Citrus Sinensis ID: 028329

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEEEcccccHHHHHHHHcccccccccccccEEcEEEEEEEccEEEEEEEEEccccccccccHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccccccHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEEEccccccHHHHHHHHHHcccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHcccccccEEEEEEEcccHHHHHcHHHcHHHHHHHHcccccccEEEEEEccccHHHccccHHHHHHHHHHHccEEEEcEccccEcHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MDSSSASQQEFDYLFKLLMIgdsgvgkssLLLSftsdnfeelsptigvdfKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVtrrdtftnlSDVWAKEIDLYSTNQDCIKLLVgnkvdkeseRVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIldtpsllaegskglkknifkqkppeadaaasgcc
Flexible Loop (DISEMBL)
MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEelsptigvdfkVKYVDVGGKKLKLAIWDTAGQERFRTltssyyrgaqGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLvgnkvdkeservvtkkeginFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLkknifkqkppeadaaasgcc
Low Complexity Region (SEG)
MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC
Disordered region (IsUnstruct)
**********FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLA**************************
Disordered Region (DISOPRED)
************YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLK*******************************SGCC
Disordered Region (DISEMBL)
********QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFK**************
Disordered Region (DISPRO)
********QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS*****************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
O23657	212	Ras-related protein RABC1	yes	no	0.942	0.933	0.863	3e-98
O49841	210	Ras-related protein RABC2	no	no	0.985	0.985	0.695	1e-85
Q9SF92	205	Ras-related protein RABC2	no	no	0.957	0.980	0.642	6e-70
P36862	203	GTP-binding protein yptV3	N/A	no	0.847	0.876	0.631	6e-60
Q6DHC1	205	Ras-related protein Rab-1	yes	no	0.919	0.941	0.583	2e-55
Q5ZLG1	206	Ras-related protein Rab-1	yes	no	0.833	0.849	0.638	6e-55
P35293	206	Ras-related protein Rab-1	yes	no	0.923	0.941	0.573	1e-54
Q5EB77	206	Ras-related protein Rab-1	yes	no	0.923	0.941	0.573	1e-54
Q5R5H5	206	Ras-related protein Rab-1	yes	no	0.790	0.805	0.650	3e-54
Q9NP72	206	Ras-related protein Rab-1	yes	no	0.790	0.805	0.650	3e-54

>sp|O23657|RABC1_ARATH Ras-related protein RABC1 OS=Arabidopsis thaliana GN=RABC1 PE=2 SV=1

 Score =  357 bits (917), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 171/198 (86%), Positives = 187/198 (94%)

Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLK 63
           SS+ Q EFDYLFK+L+IGDSGVGKSSLLLSFTS+ F++LSPTIGVDFKVKY+ +G KKLK
Sbjct: 3   SSSGQPEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEKKLK 62

Query: 64  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
           LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSD+WAKEIDLYSTNQDCIK
Sbjct: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDCIK 122

Query: 124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL 183
           +LVGNKVDKESER V+KKEGI+FAREYGCLF+ECSAKTRVNV+QCFEELVLKIL+TPSL 
Sbjct: 123 MLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLT 182

Query: 184 AEGSKGLKKNIFKQKPPE 201
           AEGS G KKNIFKQ P +
Sbjct: 183 AEGSSGGKKNIFKQNPAQ 200

Intracellular vesicle trafficking and protein transport.
Arabidopsis thaliana (taxid: 3702)

>sp|O49841|RAC2A_ARATH Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1 SV=1

 Score =  315 bits (807), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 144/207 (69%), Positives = 175/207 (84%)

Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLK 63
           SS+ Q  +D  FK+L+IGDSGVGKSSLL+SF S + E+L+PTIGVDFK+K + VGGK+LK
Sbjct: 3   SSSGQSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLK 62

Query: 64  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
           L IWDTAGQERFRTLTSSYYRGAQGII+VYDVTRR+TFTNL DVW KEI+LYSTNQ+C++
Sbjct: 63  LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQECVR 122

Query: 124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL 183
           +LVGNKVD+ESER V+++EGI  A+E  C+F+ECSA+TR NV+QCFEEL LKI++ PSLL
Sbjct: 123 MLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVPSLL 182

Query: 184 AEGSKGLKKNIFKQKPPEADAAASGCC 210
            EGS  +K+NI KQKP       SGCC
Sbjct: 183 EEGSSAVKRNILKQKPEHQTNTQSGCC 209

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF92|RAC2B_ARATH Ras-related protein RABC2b OS=Arabidopsis thaliana GN=RABC2B PE=2 SV=1

 Score =  263 bits (673), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 133/207 (64%), Positives = 166/207 (80%), Gaps = 6/207 (2%)

Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLK 63
           SS+ Q  +D  FK+L+IGDSGVGKSSLLLSF S + E+L+PTIGVDFK+K + V GK+LK
Sbjct: 3   SSSGQSGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGKRLK 62

Query: 64  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
           L IWDTAGQE+FRTLTSSY+RG+QGII+VYDVT+R+TF NL+D+WAKEI+LYSTN DCIK
Sbjct: 63  LTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHDCIK 122

Query: 124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL 183
           +LVGNKVD+ESER V+++EG+  A++  CLF ECSA+TR NV  CFEEL LKI++ PSLL
Sbjct: 123 MLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVPSLL 182

Query: 184 AEGSKGLKKNIFKQKPPEADAAASGCC 210
            EGS  +K+       P+  A    CC
Sbjct: 183 EEGSSSVKRK------PDYRAHQGRCC 203

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|P36862|YPTV3_VOLCA GTP-binding protein yptV3 OS=Volvox carteri GN=YPTV3 PE=3 SV=1

 Score =  230 bits (586), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 113/179 (63%), Positives = 137/179 (76%), Gaps = 1/179 (0%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           DY FK+L++GDSGVGKS +L  FTS  FEE  + TIGVDFKVKY+   GK+ KL IWDTA
Sbjct: 7   DYTFKVLLVGDSGVGKSCILTRFTSGIFEESTTSTIGVDFKVKYLTADGKRCKLTIWDTA 66

Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQERFRTLTSSYYRGAQGII VYDVTRRDTF +L   W +E D+YST +  IK++V NKV
Sbjct: 67  GQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMREFDIYSTVESAIKMVVANKV 126

Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKG 189
           D  ++R V+ +EG +FAR +GCLF+E SA+  + V Q FEEL+LKILDTP LL   + G
Sbjct: 127 DLSAQRQVSSEEGHDFARRHGCLFVETSARANLAVGQAFEELLLKILDTPLLLETTAVG 185

Protein transport. Probably involved in vesicular traffic.

Volvox carteri (taxid: 3067)

>sp|Q6DHC1|RB18B_DANRE Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1

 Score =  215 bits (547), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 115/197 (58%), Positives = 139/197 (70%), Gaps = 4/197 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + + G + KLAIWDTAGQE
Sbjct: 9   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQE 68

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFRTLT SYYRGAQG+I+VYDVT+RDTFT L + W  E++ Y T  D +K+LVGNK+DK+
Sbjct: 69  RFRTLTPSYYRGAQGVILVYDVTKRDTFTKLEN-WLNELETYCTRNDLVKMLVGNKIDKD 127

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKN 193
           + R V + EG+ FAR++  LFIE SAKTR  VQ  FEELV KIL TP L  E S      
Sbjct: 128 N-REVDRNEGLKFARKHSMLFIEASAKTRDGVQCAFEELVEKILQTPGLW-ESSIQNHGV 185

Query: 194 IFKQKPPEADAAASGCC 210
                 P+   A  G C
Sbjct: 186 QLSDNEPQRQGACGGYC 202

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Danio rerio (taxid: 7955)

>sp|Q5ZLG1|RAB18_CHICK Ras-related protein Rab-18 OS=Gallus gallus GN=RAB18 PE=2 SV=1

 Score =  213 bits (543), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 115/180 (63%), Positives = 135/180 (75%), Gaps = 5/180 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQE
Sbjct: 9   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D +K+LVGNK+DKE
Sbjct: 69  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVKMLVGNKIDKE 127

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGS--KGLK 191
           + R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L    S  KG+K
Sbjct: 128 N-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESESQNKGVK 186

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Gallus gallus (taxid: 9031)

>sp|P35293|RAB18_MOUSE Ras-related protein Rab-18 OS=Mus musculus GN=Rab18 PE=2 SV=2

 Score =  213 bits (541), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 113/197 (57%), Positives = 137/197 (69%), Gaps = 3/197 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQE
Sbjct: 9   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE
Sbjct: 69  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKE 127

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKN 193
           + R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L    ++     
Sbjct: 128 N-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVK 186

Query: 194 IFKQKPPEADAAASGCC 210
           +  ++      A  G C
Sbjct: 187 LSHREESRGGGACGGYC 203

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Mus musculus (taxid: 10090)

>sp|Q5EB77|RAB18_RAT Ras-related protein Rab-18 OS=Rattus norvegicus GN=Rab18 PE=2 SV=1

 Score =  212 bits (540), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 113/197 (57%), Positives = 137/197 (69%), Gaps = 3/197 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQE
Sbjct: 9   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE
Sbjct: 69  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKE 127

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKN 193
           + R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L    ++     
Sbjct: 128 N-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVK 186

Query: 194 IFKQKPPEADAAASGCC 210
           +  ++      A  G C
Sbjct: 187 LSPREESHGGGACGGYC 203

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Rattus norvegicus (taxid: 10116)

>sp|Q5R5H5|RAB18_PONAB Ras-related protein Rab-18 OS=Pongo abelii GN=RAB18 PE=2 SV=1

 Score =  211 bits (537), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 110/169 (65%), Positives = 129/169 (76%), Gaps = 3/169 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQE
Sbjct: 9   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE
Sbjct: 69  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKE 127

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           + R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L
Sbjct: 128 N-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGL 175

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Pongo abelii (taxid: 9601)

>sp|Q9NP72|RAB18_HUMAN Ras-related protein Rab-18 OS=Homo sapiens GN=RAB18 PE=1 SV=1

 Score =  211 bits (537), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 110/169 (65%), Positives = 129/169 (76%), Gaps = 3/169 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQE
Sbjct: 9   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE
Sbjct: 69  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKE 127

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           + R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L
Sbjct: 128 N-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGL 175

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
302142732	307	unnamed protein product [Vitis vinifera]	1.0	0.684	0.871	1e-107
225457841	211	PREDICTED: ras-related protein RABC1 iso	1.0	0.995	0.871	1e-106
388517279	209	unknown [Lotus japonicus]	0.995	1.0	0.9	1e-106
224093425	209	predicted protein [Populus trichocarpa]	0.995	1.0	0.895	1e-106
1370174	207	RAB1Y [Lotus japonicus]	0.985	1.0	0.893	1e-106
363808158	209	uncharacterized protein LOC100787603 [Gl	0.995	1.0	0.885	1e-105
449459232	209	PREDICTED: ras-related protein RABC1-lik	0.995	1.0	0.885	1e-105
351721968	209	uncharacterized protein LOC100526880 [Gl	0.995	1.0	0.880	1e-105
224080973	209	predicted protein [Populus trichocarpa]	0.995	1.0	0.885	1e-105
224062966	211	predicted protein [Populus trichocarpa]	0.995	0.990	0.866	1e-104

>gi|302142732|emb|CBI19935.3| unnamed protein product [Vitis vinifera]

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/210 (87%), Positives = 204/210 (97%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK 60
           +  SS+SQ EFDYLFKLL+IGDSGVGKS+LLLSFTS+ FE+LSPTIGVDFKVK+V++GGK
Sbjct: 98  LPDSSSSQPEFDYLFKLLLIGDSGVGKSTLLLSFTSNTFEDLSPTIGVDFKVKHVNIGGK 157

Query: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
           KLKLAIWDTAGQERFRTLTSSYYRGAQG+IMVYDVTRR+TFTNLSD+WAKEIDLYSTNQD
Sbjct: 158 KLKLAIWDTAGQERFRTLTSSYYRGAQGVIMVYDVTRRETFTNLSDIWAKEIDLYSTNQD 217

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180
           CIK+LVGNKVDKESERVVTKKEGI+FAREYGCLF+ECSAKTRVNV+QCFEELVLKIL+TP
Sbjct: 218 CIKMLVGNKVDKESERVVTKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETP 277

Query: 181 SLLAEGSKGLKKNIFKQKPPEADAAASGCC 210
           SLLAEGS G++KNIFKQKPPE+DA+ SGCC
Sbjct: 278 SLLAEGSSGVRKNIFKQKPPESDASTSGCC 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457841|ref|XP_002267387.1| PREDICTED: ras-related protein RABC1 isoform 1 [Vitis vinifera] gi|359492296|ref|XP_003634396.1| PREDICTED: ras-related protein RABC1 [Vitis vinifera]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/210 (87%), Positives = 204/210 (97%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK 60
           +  SS+SQ EFDYLFKLL+IGDSGVGKS+LLLSFTS+ FE+LSPTIGVDFKVK+V++GGK
Sbjct: 2   LPDSSSSQPEFDYLFKLLLIGDSGVGKSTLLLSFTSNTFEDLSPTIGVDFKVKHVNIGGK 61

Query: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
           KLKLAIWDTAGQERFRTLTSSYYRGAQG+IMVYDVTRR+TFTNLSD+WAKEIDLYSTNQD
Sbjct: 62  KLKLAIWDTAGQERFRTLTSSYYRGAQGVIMVYDVTRRETFTNLSDIWAKEIDLYSTNQD 121

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180
           CIK+LVGNKVDKESERVVTKKEGI+FAREYGCLF+ECSAKTRVNV+QCFEELVLKIL+TP
Sbjct: 122 CIKMLVGNKVDKESERVVTKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETP 181

Query: 181 SLLAEGSKGLKKNIFKQKPPEADAAASGCC 210
           SLLAEGS G++KNIFKQKPPE+DA+ SGCC
Sbjct: 182 SLLAEGSSGVRKNIFKQKPPESDASTSGCC 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517279|gb|AFK46701.1| unknown [Lotus japonicus]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/210 (90%), Positives = 202/210 (96%), Gaps = 1/210 (0%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK 60
           MDSSSA Q EFDYLFKLLMIGDSGVGKSSLLLSFTSD F+++SPTIGVDFKVKYV +GGK
Sbjct: 1   MDSSSAPQ-EFDYLFKLLMIGDSGVGKSSLLLSFTSDEFQDMSPTIGVDFKVKYVAIGGK 59

Query: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
           KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLS++WAKEIDLYSTNQD
Sbjct: 60  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEIWAKEIDLYSTNQD 119

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180
           CIK+LVGNKVDKES+RVV+KKEGI+FAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP
Sbjct: 120 CIKMLVGNKVDKESDRVVSKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 179

Query: 181 SLLAEGSKGLKKNIFKQKPPEADAAASGCC 210
           SLLAEGSKG+KKNIFK K P+ADA+ S CC
Sbjct: 180 SLLAEGSKGVKKNIFKDKQPQADASTSSCC 209

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093425|ref|XP_002309918.1| predicted protein [Populus trichocarpa] gi|222852821|gb|EEE90368.1| predicted protein [Populus trichocarpa]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/210 (89%), Positives = 202/210 (96%), Gaps = 1/210 (0%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK 60
           MDSSS+S  EFDYLFKLLMIGDSGVGKSSLLLSFTSD FE+LSPTIGVDFKVK+V++GGK
Sbjct: 1   MDSSSSSP-EFDYLFKLLMIGDSGVGKSSLLLSFTSDTFEDLSPTIGVDFKVKFVNIGGK 59

Query: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
           KLKLAIWDTAGQERFRTLTSSYYRGAQGI+MVYDVTRRDTFTNLS++WAKEIDLYSTNQD
Sbjct: 60  KLKLAIWDTAGQERFRTLTSSYYRGAQGIVMVYDVTRRDTFTNLSEIWAKEIDLYSTNQD 119

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180
           CIKLLVGNKVDKES+RVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLK+LDTP
Sbjct: 120 CIKLLVGNKVDKESDRVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKVLDTP 179

Query: 181 SLLAEGSKGLKKNIFKQKPPEADAAASGCC 210
           SLLAEGSKG+KKNIF +K P+ DA+ S CC
Sbjct: 180 SLLAEGSKGVKKNIFNEKRPQPDASTSSCC 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1370174|emb|CAA98164.1| RAB1Y [Lotus japonicus]

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/207 (89%), Positives = 200/207 (96%)

Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLK 63
           SS++ QEFDYLFKLLMIGDSGVGKSSLLLSFTSD F+++SPTIGVDFKVKYV +GGKKLK
Sbjct: 1   SSSAPQEFDYLFKLLMIGDSGVGKSSLLLSFTSDEFQDMSPTIGVDFKVKYVAIGGKKLK 60

Query: 64  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
           LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLS++WAKEIDLYSTNQDCIK
Sbjct: 61  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEIWAKEIDLYSTNQDCIK 120

Query: 124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL 183
           +LVGNKVDKES+RVV+KKEGI+FAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL
Sbjct: 121 MLVGNKVDKESDRVVSKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL 180

Query: 184 AEGSKGLKKNIFKQKPPEADAAASGCC 210
           AEGSKG+KKNIFK K P+ADA+ S CC
Sbjct: 181 AEGSKGVKKNIFKDKQPQADASTSSCC 207

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808158|ref|NP_001242481.1| uncharacterized protein LOC100787603 [Glycine max] gi|255639535|gb|ACU20062.1| unknown [Glycine max] gi|255639578|gb|ACU20083.1| unknown [Glycine max]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/210 (88%), Positives = 201/210 (95%), Gaps = 1/210 (0%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK 60
           MDSSS   QEFDYLFKLLMIGDSGVGKSSLLLSFTSD FE+LSPTIGVDFKVKYV +GGK
Sbjct: 1   MDSSS-EHQEFDYLFKLLMIGDSGVGKSSLLLSFTSDAFEDLSPTIGVDFKVKYVTMGGK 59

Query: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
           KLKLAIWDTAGQERFRTLT+SYYRGAQGIIMVYDVTRR TFTNLS++WAKEIDLYSTNQD
Sbjct: 60  KLKLAIWDTAGQERFRTLTNSYYRGAQGIIMVYDVTRRGTFTNLSEIWAKEIDLYSTNQD 119

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180
           CIK+LVGNKVDKE +RVVTKKEGI+FAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP
Sbjct: 120 CIKMLVGNKVDKEGDRVVTKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 179

Query: 181 SLLAEGSKGLKKNIFKQKPPEADAAASGCC 210
           SL+AEGSKG+KKNIFK++PP++DA+ S CC
Sbjct: 180 SLIAEGSKGVKKNIFKERPPQSDASTSSCC 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459232|ref|XP_004147350.1| PREDICTED: ras-related protein RABC1-like [Cucumis sativus] gi|449513301|ref|XP_004164289.1| PREDICTED: ras-related protein RABC1-like [Cucumis sativus]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/210 (88%), Positives = 200/210 (95%), Gaps = 1/210 (0%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK 60
           MDS+S +Q EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE+LSPTIGVDFKVKYV  GGK
Sbjct: 1   MDSTS-NQTEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEDLSPTIGVDFKVKYVTAGGK 59

Query: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
           KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLS+VWAKEIDLYSTNQD
Sbjct: 60  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEVWAKEIDLYSTNQD 119

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180
           CIK+LVGNKVDKES R VTKKEGI+ AREYGCLF ECSAKTRVNVQQCFEELVLKILDTP
Sbjct: 120 CIKMLVGNKVDKESYRTVTKKEGIDMAREYGCLFTECSAKTRVNVQQCFEELVLKILDTP 179

Query: 181 SLLAEGSKGLKKNIFKQKPPEADAAASGCC 210
           SLL+EGSKG+++NIFK+KPP++DA+ S CC
Sbjct: 180 SLLSEGSKGVRRNIFKEKPPQSDASTSSCC 209

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721968|ref|NP_001235436.1| uncharacterized protein LOC100526880 [Glycine max] gi|255631052|gb|ACU15890.1| unknown [Glycine max]

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/210 (88%), Positives = 200/210 (95%), Gaps = 1/210 (0%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK 60
           MDSSS   QEFDYLFKLLMIGDSGVGKSSLLLSFTSD FE+LSPTIGVD KVKYV +GGK
Sbjct: 1   MDSSSG-HQEFDYLFKLLMIGDSGVGKSSLLLSFTSDAFEDLSPTIGVDIKVKYVMMGGK 59

Query: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
           KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLS++WAKEIDLYSTNQD
Sbjct: 60  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEIWAKEIDLYSTNQD 119

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180
           CIK+L GNK+DK+ +RVVTKKEGI+FAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP
Sbjct: 120 CIKMLAGNKLDKDGDRVVTKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 179

Query: 181 SLLAEGSKGLKKNIFKQKPPEADAAASGCC 210
           SL+AEGSKG+KKNIFK +PP++DA+AS CC
Sbjct: 180 SLIAEGSKGVKKNIFKDRPPQSDASASSCC 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080973|ref|XP_002306250.1| predicted protein [Populus trichocarpa] gi|222855699|gb|EEE93246.1| predicted protein [Populus trichocarpa]

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/210 (88%), Positives = 199/210 (94%), Gaps = 1/210 (0%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK 60
           MDSSS +  EFDYLFKLLMIGDSGVGKSSLLLSFTSD FE+LSPTIGVDFKVK+V++GGK
Sbjct: 1   MDSSS-NAPEFDYLFKLLMIGDSGVGKSSLLLSFTSDTFEDLSPTIGVDFKVKFVNIGGK 59

Query: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
            LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLS++WAKEIDLYSTNQD
Sbjct: 60  NLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEIWAKEIDLYSTNQD 119

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180
           CIK+LVGNKVDKES+R VTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP
Sbjct: 120 CIKMLVGNKVDKESDRAVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 179

Query: 181 SLLAEGSKGLKKNIFKQKPPEADAAASGCC 210
           SLLAEGSKG+KKNIF +K P+ DA+ S CC
Sbjct: 180 SLLAEGSKGVKKNIFSEKRPQPDASTSSCC 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062966|ref|XP_002300952.1| predicted protein [Populus trichocarpa] gi|222842678|gb|EEE80225.1| predicted protein [Populus trichocarpa]

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/210 (86%), Positives = 199/210 (94%), Gaps = 1/210 (0%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK 60
           M+  S SQQEF+YLFKLL+IGDSGVGKS+LLLSFTS NFE+LSPTIGVDFKVK+V +GGK
Sbjct: 1   MEVPSTSQQEFEYLFKLLLIGDSGVGKSTLLLSFTSKNFEDLSPTIGVDFKVKHVTIGGK 60

Query: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
           KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR+TFTNLS++WAKEIDLYSTNQD
Sbjct: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEIWAKEIDLYSTNQD 120

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180
           CIK+LVGNKVDKESERVVTKKEGI+FAREYGCLF+ECSAKTRVNV+QCFEELVLKIL+TP
Sbjct: 121 CIKMLVGNKVDKESERVVTKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETP 180

Query: 181 SLLAEGSKGLKKNIFKQKPPEADAAASGCC 210
           SLLAEGS G+KKN+FKQKPPE D   S CC
Sbjct: 181 SLLAEGSSGVKKNVFKQKPPE-DVTTSSCC 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:2029167	212	RAB18 "RAB GTPASE HOMOLOG B18"	0.985	0.976	0.836	1.3e-91
TAIR|locus:2831859	210	RABC2A "RAB GTPase homolog C2A	0.985	0.985	0.695	1.3e-77
TAIR|locus:2085084	205	RABC2b "RAB GTPase homolog C2B	0.957	0.980	0.642	8e-69
UNIPROTKB|Q5ZLG1	206	RAB18 "Ras-related protein Rab	0.919	0.936	0.586	8.9e-54
ZFIN|ZDB-GENE-040801-185	205	rab18b "RAB18B, member RAS onc	0.914	0.936	0.576	1.5e-53
UNIPROTKB|Q0IIG8	206	RAB18 "Ras-related protein Rab	0.909	0.927	0.590	3e-53
UNIPROTKB|Q9NP72	206	RAB18 "Ras-related protein Rab	0.909	0.927	0.590	3e-53
UNIPROTKB|I3LC07	206	RAB18 "Uncharacterized protein	0.909	0.927	0.590	3e-53
UNIPROTKB|Q5R5H5	206	RAB18 "Ras-related protein Rab	0.909	0.927	0.590	3e-53
MGI|MGI:102790	206	Rab18 "RAB18, member RAS oncog	0.909	0.927	0.590	3.8e-53

TAIR|locus:2029167 RAB18 "RAB GTPASE HOMOLOG B18" [Arabidopsis thaliana (taxid:3702)]

 Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
 Identities = 174/208 (83%), Positives = 192/208 (92%)

Query:     4 SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLK 63
             SS+ Q EFDYLFK+L+IGDSGVGKSSLLLSFTS+ F++LSPTIGVDFKVKY+ +G KKLK
Sbjct:     3 SSSGQPEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEKKLK 62

Query:    64 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
             LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSD+WAKEIDLYSTNQDCIK
Sbjct:    63 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDCIK 122

Query:   124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL 183
             +LVGNKVDKESER V+KKEGI+FAREYGCLF+ECSAKTRVNV+QCFEELVLKIL+TPSL 
Sbjct:   123 MLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLT 182

Query:   184 AEGSKGLKKNIFKQKPPEADAAASG-CC 210
             AEGS G KKNIFKQ P +  + +S  CC
Sbjct:   183 AEGSSGGKKNIFKQNPAQTTSTSSSYCC 210

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2831859 RABC2A "RAB GTPase homolog C2A" [Arabidopsis thaliana (taxid:3702)]

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 144/207 (69%), Positives = 175/207 (84%)

Query:     4 SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLK 63
             SS+ Q  +D  FK+L+IGDSGVGKSSLL+SF S + E+L+PTIGVDFK+K + VGGK+LK
Sbjct:     3 SSSGQSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLK 62

Query:    64 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
             L IWDTAGQERFRTLTSSYYRGAQGII+VYDVTRR+TFTNL DVW KEI+LYSTNQ+C++
Sbjct:    63 LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQECVR 122

Query:   124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL 183
             +LVGNKVD+ESER V+++EGI  A+E  C+F+ECSA+TR NV+QCFEEL LKI++ PSLL
Sbjct:   123 MLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVPSLL 182

Query:   184 AEGSKGLKKNIFKQKPPEADAAASGCC 210
              EGS  +K+NI KQKP       SGCC
Sbjct:   183 EEGSSAVKRNILKQKPEHQTNTQSGCC 209

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005777 "peroxisome" evidence=IDA

GO:0030742 "GTP-dependent protein binding" evidence=IPI

GO:0080115 "myosin XI tail binding" evidence=IPI

TAIR|locus:2085084 RABC2b "RAB GTPase homolog C2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
 Identities = 133/207 (64%), Positives = 166/207 (80%)

Query:     4 SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLK 63
             SS+ Q  +D  FK+L+IGDSGVGKSSLLLSF S + E+L+PTIGVDFK+K + V GK+LK
Sbjct:     3 SSSGQSGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGKRLK 62

Query:    64 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
             L IWDTAGQE+FRTLTSSY+RG+QGII+VYDVT+R+TF NL+D+WAKEI+LYSTN DCIK
Sbjct:    63 LTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHDCIK 122

Query:   124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL 183
             +LVGNKVD+ESER V+++EG+  A++  CLF ECSA+TR NV  CFEEL LKI++ PSLL
Sbjct:   123 MLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVPSLL 182

Query:   184 AEGSKGLKKNIFKQKPPEADAAASGCC 210
              EGS  +K+       P+  A    CC
Sbjct:   183 EEGSSSVKRK------PDYRAHQGRCC 203

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q5ZLG1 RAB18 "Ras-related protein Rab-18" [Gallus gallus (taxid:9031)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 115/196 (58%), Positives = 138/196 (70%)

Query:    16 KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
             K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query:    75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
             FRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D +K+LVGNK+DKE+
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVKMLVGNKIDKEN 128

Query:   135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNI 194
              R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L    S+     +
Sbjct:   129 -REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESESQNKGVKL 187

Query:   195 FKQKPPEADAAASGCC 210
               ++      A  G C
Sbjct:   188 SNKEEGHGGGACGGYC 203

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0001654 "eye development" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

ZFIN|ZDB-GENE-040801-185 rab18b "RAB18B, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 113/196 (57%), Positives = 139/196 (70%)

Query:    16 KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
             K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + + G + KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQER 69

Query:    75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
             FRTLT SYYRGAQG+I+VYDVT+RDTFT L + W  E++ Y T  D +K+LVGNK+DK++
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTKRDTFTKLEN-WLNELETYCTRNDLVKMLVGNKIDKDN 128

Query:   135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNI 194
              R V + EG+ FAR++  LFIE SAKTR  VQ  FEELV KIL TP L     +     +
Sbjct:   129 -REVDRNEGLKFARKHSMLFIEASAKTRDGVQCAFEELVEKILQTPGLWESSIQNHGVQL 187

Query:   195 FKQKPPEADAAASGCC 210
                  P+   A  G C
Sbjct:   188 -SDNEPQRQGACGGYC 202

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007420 "brain development" evidence=IMP

GO:0001654 "eye development" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

UNIPROTKB|Q0IIG8 RAB18 "Ras-related protein Rab-18" [Bos taurus (taxid:9913)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 117/198 (59%), Positives = 143/198 (72%)

Query:    16 KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
             K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query:    75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
             FRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE+
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN 128

Query:   135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL-AEG-SKGLKK 192
              R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L  +E  +KG+K 
Sbjct:   129 -REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVK- 186

Query:   193 NIFKQKPPEADAAASGCC 210
              +  ++  +   A  G C
Sbjct:   187 -LTHREEGQGGGACGGYC 203

GO:0019003 "GDP binding" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0001654 "eye development" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q9NP72 RAB18 "Ras-related protein Rab-18" [Homo sapiens (taxid:9606)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 117/198 (59%), Positives = 143/198 (72%)

Query:    16 KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
             K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query:    75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
             FRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE+
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN 128

Query:   135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL-AEG-SKGLKK 192
              R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L  +E  +KG+K 
Sbjct:   129 -REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVK- 186

Query:   193 NIFKQKPPEADAAASGCC 210
              +  ++  +   A  G C
Sbjct:   187 -LSHREEGQGGGACGGYC 203

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0003924 "GTPase activity" evidence=NAS

GO:0006897 "endocytosis" evidence=NAS

GO:0007264 "small GTPase mediated signal transduction" evidence=NAS

GO:0001654 "eye development" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019003 "GDP binding" evidence=IDA

GO:0005622 "intracellular" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=NAS

UNIPROTKB|I3LC07 RAB18 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 117/198 (59%), Positives = 143/198 (72%)

Query:    16 KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
             K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query:    75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
             FRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE+
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN 128

Query:   135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL-AEG-SKGLKK 192
              R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L  +E  +KG+K 
Sbjct:   129 -REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVK- 186

Query:   193 NIFKQKPPEADAAASGCC 210
              +  ++  +   A  G C
Sbjct:   187 -LTHREEGQGGGACGGYC 203

GO:0005622 "intracellular" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q5R5H5 RAB18 "Ras-related protein Rab-18" [Pongo abelii (taxid:9601)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 117/198 (59%), Positives = 143/198 (72%)

Query:    16 KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
             K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query:    75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
             FRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE+
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN 128

Query:   135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL-AEG-SKGLKK 192
              R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L  +E  +KG+K 
Sbjct:   129 -REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVK- 186

Query:   193 NIFKQKPPEADAAASGCC 210
              +  ++  +   A  G C
Sbjct:   187 -LSHREEGQGGGACGGYC 203

GO:0001654 "eye development" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

MGI|MGI:102790 Rab18 "RAB18, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 117/198 (59%), Positives = 142/198 (71%)

Query:    16 KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
             K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query:    75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
             FRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE+
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN 128

Query:   135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL-AEG-SKGLKK 192
              R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L  +E  +KG+K 
Sbjct:   129 -REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVK- 186

Query:   193 NIFKQKPPEADAAASGCC 210
              +  ++      A  G C
Sbjct:   187 -LSHREESRGGGACGGYC 203

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019003 "GDP binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q05976	RB18A_LYMST	No assigned EC number	0.5517	0.9380	0.9752	N/A	no
Q5ZLG1	RAB18_CHICK	No assigned EC number	0.6388	0.8333	0.8495	yes	no
Q9TVU5	RAB1_THEPA	No assigned EC number	0.5087	0.8047	0.7681	yes	no
Q5EB77	RAB18_RAT	No assigned EC number	0.5736	0.9238	0.9417	yes	no
Q8MXS1	RAB18_CAEEL	No assigned EC number	0.5798	0.7904	0.8177	yes	no
Q0IIG8	RAB18_BOVIN	No assigned EC number	0.6508	0.7904	0.8058	yes	no
Q54GY8	RAB18_DICDI	No assigned EC number	0.5523	0.8047	0.8366	yes	no
P35293	RAB18_MOUSE	No assigned EC number	0.5736	0.9238	0.9417	yes	no
P36862	YPTV3_VOLCA	No assigned EC number	0.6312	0.8476	0.8768	N/A	no
Q4UB16	RAB1_THEAN	No assigned EC number	0.5087	0.8047	0.7681	yes	no
Q6DHC1	RB18B_DANRE	No assigned EC number	0.5837	0.9190	0.9414	yes	no
P22127	RAB10_DIPOM	No assigned EC number	0.5056	0.8190	0.86	N/A	no
Q9NP72	RAB18_HUMAN	No assigned EC number	0.6508	0.7904	0.8058	yes	no
O23657	RABC1_ARATH	No assigned EC number	0.8636	0.9428	0.9339	yes	no
Q5R5H5	RAB18_PONAB	No assigned EC number	0.6508	0.7904	0.8058	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014334001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (211 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-116
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	1e-104
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	6e-91
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	1e-80
pfam00071	162	pfam00071, Ras, Ras family	4e-78
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	9e-78
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	2e-72
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	2e-64
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	4e-62
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	9e-59
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	6e-58
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	3e-57
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-55
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	6e-54
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	1e-53
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	1e-52
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	5e-52
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	7e-52
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	2e-50
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	8e-49
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	1e-48
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-48
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-47
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	9e-47
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	2e-44
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	3e-44
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	7e-44
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	2e-43
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	1e-39
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	2e-39
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	1e-38
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	3e-38
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	3e-38
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	7e-36
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	1e-35
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	1e-35
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	2e-35
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	5e-35
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	2e-33
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	3e-33
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	4e-33
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	4e-33
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	2e-32
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	6e-32
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	8e-32
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	5e-31
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	7e-31
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	4e-30
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	6e-29
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	7e-29
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	7e-28
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	1e-27
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-27
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-27
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	3e-27
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-26
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	2e-26
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	2e-26
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	6e-26
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	8e-26
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	3e-25
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	5e-25
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	4e-24
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	6e-24
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	9e-24
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	1e-23
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-23
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	2e-22
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-21
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	5e-21
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	7e-21
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	1e-20
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	4e-20
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	3e-19
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	6e-19
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	7e-19
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	6e-18
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	2e-16
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	3e-16
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	7e-16
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	3e-14
pfam08477	116	pfam08477, Miro, Miro-like protein	4e-14
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	4e-14
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	2e-13
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	2e-13
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	5e-13
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	8e-13
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	5e-12
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	1e-11
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	1e-11
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	2e-11
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	9e-11
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	2e-10
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	3e-10
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	3e-10
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	5e-10
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	5e-10
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	6e-10
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	2e-09
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	2e-09
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	2e-09
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	4e-08
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	2e-07
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	5e-07
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	8e-06
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	9e-06
cd00880	161	cd00880, Era_like, E	6e-05
cd01881	167	cd01881, Obg_like, Obg-like family of GTPases cons	9e-05
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	1e-04
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	3e-04
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	4e-04
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	8e-04
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	0.001
pfam00009	184	pfam00009, GTP_EFTU, Elongation factor Tu GTP bind	0.003
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	0.003

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  329 bits (845), Expect = e-116
 Identities = 147/210 (70%), Positives = 176/210 (83%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK 60
           M SSS     +D  FK+L+IGDSGVGKSSLL+SF S + E+L+PTIGVDFK+K + VGGK
Sbjct: 1   MGSSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGK 60

Query: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
           +LKL IWDTAGQERFRTLTSSYYR AQGII+VYDVTRR+TFTNLSDVW KE++LYSTNQD
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQD 120

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180
           C+K+LVGNKVD+ESER V+++EG+  A+E+GCLF+ECSAKTR NV+QCFEEL LKI++ P
Sbjct: 121 CVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVP 180

Query: 181 SLLAEGSKGLKKNIFKQKPPEADAAASGCC 210
           SLL EGS  +K+NI KQKP        GCC
Sbjct: 181 SLLEEGSTAVKRNILKQKPEHQPPPNGGCC 210

Length = 211

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  296 bits (761), Expect = e-104
 Identities = 120/163 (73%), Positives = 136/163 (83%), Gaps = 3/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+L+IGDSGVGKSSLLL FT D F+E LS TIGVDFKVK V V GKK+KLAIWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFRTLTSSYYRGAQG+I+VYDVTRRDTF NL D W  E+D YSTN D +K+LVGNK+DKE
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNL-DTWLNELDTYSTNPDAVKMLVGNKIDKE 119

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R VT++EG  FAR++  LFIE SAKTR+ VQQ FEELV KI
Sbjct: 120 N-REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  263 bits (675), Expect = 6e-91
 Identities = 91/166 (54%), Positives = 120/166 (72%), Gaps = 3/166 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FK+++IGDSGVGKSSLL  FT   F E    TIGVDFK K ++V GK++KL IWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFR++TSSYYRGA G ++VYD+T R++F NL + W KE+  Y+ + + + +LVGNK D E
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLEN-WLKELREYA-SPNVVIMLVGNKSDLE 118

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
            +R V+++E   FA E+G  F E SAKT  NV++ FEEL  +IL  
Sbjct: 119 EQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  237 bits (607), Expect = 1e-80
 Identities = 91/160 (56%), Positives = 112/160 (70%), Gaps = 3/160 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FK+++IGDSGVGK+SLLL F  + F E    TIGVDFK K ++V GKK+KL IWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFR++TSSYYRGA G I+VYDVT R++F NL   W  E+  Y+   +   +LVGNK D E
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDK-WLNELKEYA-PPNIPIILVGNKSDLE 118

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
            ER V+ +E   FA+E G LF E SAKT  NV + FE L 
Sbjct: 119 DERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLA 158

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  230 bits (590), Expect = 4e-78
 Identities = 89/164 (54%), Positives = 115/164 (70%), Gaps = 3/164 (1%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD GVGKSSLL+ FT + F EE  PTIGVDF  K ++V GK +KL IWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           FR L   YYRGAQG ++VYD+T RD+F N+   W +EI  ++   +   +LVGNK D E 
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKK-WLEEILRHADE-NVPIVLVGNKCDLED 118

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           +RVV+ +EG   A+E G  F+E SAKT  NV++ FEEL  +IL 
Sbjct: 119 QRVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  230 bits (588), Expect = 9e-78
 Identities = 94/168 (55%), Positives = 125/168 (74%), Gaps = 3/168 (1%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           DYLFKLL+IGDSGVGKS LLL F+ D+F      TIG+DFK++ +++ GKK+KL IWDTA
Sbjct: 1   DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTA 60

Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQERFRT+T+SYYRGA GII+VYD+T   +F N+ + W + ID ++ ++D  ++LVGNK 
Sbjct: 61  GQERFRTITTSYYRGAMGIILVYDITDEKSFENIKN-WMRNIDEHA-SEDVERMLVGNKC 118

Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           D E +RVV+K+EG   AREYG  F+E SAK  +NV++ F  L   IL 
Sbjct: 119 DMEEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDILK 166

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  216 bits (552), Expect = 2e-72
 Identities = 91/167 (54%), Positives = 116/167 (69%), Gaps = 3/167 (1%)

Query: 13  YLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71
           YLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +KL IWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           QERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y  +++  KLLVGNK D
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLQEIDRY-ASENVNKLLVGNKCD 118

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
              ++VV   E   FA E G  F+E SAK   NV++ F  +  +I  
Sbjct: 119 LTDKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREIKK 165

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  196 bits (501), Expect = 2e-64
 Identities = 78/166 (46%), Positives = 113/166 (68%), Gaps = 3/166 (1%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           DYLFK+++IGDSGVGKS+LL  FT + F   S  TIGV+F  + + + GK +K  IWDTA
Sbjct: 1   DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTA 60

Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQER+R +TS+YYRGA G ++VYD+T++ TF N+ + W KE+  ++ + + + +LVGNK 
Sbjct: 61  GQERYRAITSAYYRGAVGALLVYDITKKSTFENV-ERWLKELRDHA-DSNIVIMLVGNKS 118

Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           D    R V  +E   FA + G  FIE SA    NV++ F++L+ +I
Sbjct: 119 DLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  190 bits (485), Expect = 4e-62
 Identities = 84/169 (49%), Positives = 118/169 (69%), Gaps = 3/169 (1%)

Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDT 69
           + YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + + + GK++KL IWDT
Sbjct: 1   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 60

Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQE FR++T SYYRGA G ++VYD+TRR+TF +L+  W ++   +S +   I +L+GNK
Sbjct: 61  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSNSNMTI-MLIGNK 118

Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
            D ES R V+ +EG  FARE+G +F+E SAKT  NV++ F     +I D
Sbjct: 119 CDLESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYD 167

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  181 bits (463), Expect = 9e-59
 Identities = 71/164 (43%), Positives = 99/164 (60%), Gaps = 3/164 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++GDS VGKSS++L F  + F E    TIG  F  + V++    +K  IWDTAGQE
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+R+L   YYRGA   I+VYD+T  ++F      W KE+  +    + +  L GNK D E
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKS-WVKELQEHG-PPNIVIALAGNKADLE 119

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           S+R V+ +E   +A E G LF+E SAKT  NV + F E+  K+ 
Sbjct: 120 SKRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  179 bits (456), Expect = 6e-58
 Identities = 87/165 (52%), Positives = 110/165 (66%), Gaps = 3/165 (1%)

Query: 13  YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAG 71
           Y+FK ++IGD GVGKS LL  FT   F    P TIGV+F  + ++V G+K+KL IWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           QERFR +T SYYRGA G +MVYD+TRR T+ +LS       +L  TN + +  L+GNK D
Sbjct: 61  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPNTVIFLIGNKAD 118

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            E++R VT +E   FA E G LF+ECSAKT  NV+  F E   KI
Sbjct: 119 LEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKI 163

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  179 bits (455), Expect = 3e-57
 Identities = 86/204 (42%), Positives = 124/204 (60%), Gaps = 8/204 (3%)

Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIW 67
           +++D+LFKLL+IGDSGVGKSSLLL F  + F      TIGVDFK++ V++ G+++KL IW
Sbjct: 1   RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIW 60

Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLV 126
           DTAGQERFRT+TS+YYRG  G+I+VYDVT  ++F N+   W +EI+    N D + K+LV
Sbjct: 61  DTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKR-WLQEIE---QNCDDVCKVLV 116

Query: 127 GNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEG 186
           GNK D    +VV  ++   FA + G    E SAK  +NV++ F  +   +L         
Sbjct: 117 GNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAK--KDNL 174

Query: 187 SKGLKKNIFKQKPPEADAAASGCC 210
           +K  ++          ++     C
Sbjct: 175 AKQQQQQQNDVVKLPKNSKRKKRC 198

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  173 bits (440), Expect = 2e-55
 Identities = 76/163 (46%), Positives = 107/163 (65%), Gaps = 4/163 (2%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           D+LFK+++IGDS VGK+ ++  F S  F E    TIGVDF +K +++ GK++KL IWDTA
Sbjct: 1   DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTA 60

Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQERFRT+T SYYR A G I+ YD+TRR +F ++   W +E++ Y    + + LL+GNK 
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPH-WIEEVEKY-GASNVVLLLIGNKC 118

Query: 131 DKESERVVTKKEGINFAREYGCLF-IECSAKTRVNVQQCFEEL 172
           D E +R V  +E    A  YG L  +E SAK   NV++ F  +
Sbjct: 119 DLEEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLM 161

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  171 bits (434), Expect = 6e-54
 Identities = 86/212 (40%), Positives = 128/212 (60%), Gaps = 15/212 (7%)

Query: 13  YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVG-GKKLKLAIWDTA 70
           Y F+L++IGDS VGKSSLL  FT   F E+S PT+GVDF  + +++  G ++KL +WDTA
Sbjct: 1   YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTA 60

Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQERFR++T SYYR + G+++V+D+T R++F ++ D W +E   +      + +LVG+K 
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHKC 119

Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI---LDTPSLLAE-G 186
           D ES+R VT++E    A++ G  +IE SA+T  NV++ FE L  +I   +    L A  G
Sbjct: 120 DLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCALDG 179

Query: 187 SKGLKKNIFK--------QKPPEADAAASGCC 210
             G+K             + P  A    S CC
Sbjct: 180 WDGVKSGFPAGRAFSLEERSPTFASPEKSCCC 211

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  170 bits (432), Expect = 1e-53
 Identities = 79/168 (47%), Positives = 114/168 (67%), Gaps = 3/168 (1%)

Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDT 69
           + YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + + +  K +KL IWDT
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62

Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQE FR++T SYYRGA G ++VYD+TRR+TF +L+  W ++   ++ N +   +L+GNK
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHA-NANMTIMLIGNK 120

Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
            D    R V+ +EG  FA+E+G +F+E SAKT  NV++ F +   KI 
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIY 168

Length = 210

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  166 bits (422), Expect = 1e-52
 Identities = 72/170 (42%), Positives = 114/170 (67%), Gaps = 3/170 (1%)

Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIW 67
           +++D+LFK+++IG++GVGK+ L+  FT   F      TIGVDF +K V++ G+K+KL IW
Sbjct: 2   EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIW 61

Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAGQERFR++T SYYR A  +I+ YD+T  ++F  L + W +EI+ Y+ N+  I +LVG
Sbjct: 62  DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE-WLREIEQYANNK-VITILVG 119

Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           NK+D    R V+++    F+      ++E SAK   NV++ F +L  +++
Sbjct: 120 NKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRLI 169

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  164 bits (417), Expect = 5e-52
 Identities = 79/163 (48%), Positives = 108/163 (66%), Gaps = 3/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FK L+IG +G GKS LL  F  + F++ S  TIGV+F  + V+VGGK +KL IWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFR++T SYYRGA G ++VYD+T R++F  L++ W  +    ++  D + +LVGNK D E
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTN-WLTDARTLAS-PDIVIILVGNKKDLE 118

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            +R VT  E   FA+E G LF+E SA T  NV++ F +    I
Sbjct: 119 DDREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  164 bits (417), Expect = 7e-52
 Identities = 66/163 (40%), Positives = 96/163 (58%), Gaps = 3/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            KL+ +GD  VGK+S++  F  D F+     TIG+DF  K + V  K ++L +WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFR+L  SY R +   ++VYD+T R +F N    W  ++       D I +LVGNK D  
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDK-WIDDVRD-ERGNDVIIVLVGNKTDLS 118

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            +R V+ +EG   A+E   +FIE SAK   NV+Q F+++   +
Sbjct: 119 DKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  160 bits (407), Expect = 2e-50
 Identities = 81/166 (48%), Positives = 111/166 (66%), Gaps = 3/166 (1%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           +FKLL+IG+S VGK+S L  +  D+F      T+G+DFKVK V    K++KL IWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           ER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS +   + +LVGNK D 
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-ILVGNKCDM 118

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           E ERVV+ + G   A + G  F E SAK  +NV+Q FE LV  I D
Sbjct: 119 EDERVVSAERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICD 164

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  156 bits (397), Expect = 8e-49
 Identities = 68/160 (42%), Positives = 96/160 (60%), Gaps = 5/160 (3%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FK++++G+  VGK+SL+L +  + F E    T    F  K V++GGK++ LAIWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVGNKVDK 132
           R+  L   YYR A G I+VYD+T  D+F  +   W KE  L     + I L +VGNK+D 
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKK-WIKE--LKQMRGNNISLVIVGNKIDL 117

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172
           E +RVV+K E   +A+  G    E SAKT   +++ F  L
Sbjct: 118 ERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSL 157

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  157 bits (398), Expect = 1e-48
 Identities = 83/164 (50%), Positives = 119/164 (72%), Gaps = 4/164 (2%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           ++++IG  GVGK+SL+  FT D F E    T+GVDFK+K V++ GKK++L IWDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           F ++TS+YYR A+GII+VYD+T+++TF +L   W K ID Y++ +D   LLVGNK+D E+
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYAS-EDAELLLVGNKLDCET 119

Query: 135 ERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEELVLKIL 177
           +R +T+++G  FA++  G  F E SAK   NV + F +LV  IL
Sbjct: 120 DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 163

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  156 bits (396), Expect = 2e-48
 Identities = 84/202 (41%), Positives = 122/202 (60%), Gaps = 17/202 (8%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE--ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           FK++++GDSGVGK+ LL+ F    F       T+G+ F  K V V G K+KL IWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           ERFR++T +YYR A  ++++YDVT + +F N+   W  EI  Y+   D + +L+GNK D 
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIR-AWLTEILEYA-QSDVVIMLLGNKADM 118

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF----EELVLKILDTPSLLAEGSK 188
             ERVV +++G   A+EYG  F+E SAKT +NV+  F    +EL  + ++ P    E   
Sbjct: 119 SGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRSVEQPD---EPKF 175

Query: 189 GLKKNIFKQKPPEADAAASGCC 210
            ++  + KQK       +SGCC
Sbjct: 176 KIQDYVEKQK------KSSGCC 191

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  153 bits (389), Expect = 1e-47
 Identities = 68/162 (41%), Positives = 96/162 (59%), Gaps = 3/162 (1%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++G  GVGKS+L + F S  F EE  PTI  D   K + V G+   L I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           F  +   Y R   G I+VY +T R++F  + ++  ++I      +D   +LVGNK D E+
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIR-EQILRVKDKEDVPIVLVGNKCDLEN 118

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ER V+ +EG   A E+GC F+E SAKT +N+ + F  LV +I
Sbjct: 119 ERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  153 bits (387), Expect = 9e-47
 Identities = 75/169 (44%), Positives = 114/169 (67%), Gaps = 3/169 (1%)

Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIW 67
            E+DYLFK+++IGDSGVGKS++L  FT + F  E   TIGV+F  + + V GK +K  IW
Sbjct: 7   HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIW 66

Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAGQER+R +TS+YYRGA G ++VYD+T+R TF N+   W +E+  ++ + + + ++ G
Sbjct: 67  DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQR-WLRELRDHA-DSNIVIMMAG 124

Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           NK D    R V +++G   A + G  F+E SA    NV++ F+ ++L+I
Sbjct: 125 NKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEI 173

Length = 216

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  145 bits (366), Expect = 2e-44
 Identities = 74/164 (45%), Positives = 109/164 (66%), Gaps = 3/164 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           F+LL+IGDSGVGK+ LL  FT + F      TIGVDFK+K ++V G K+++ IWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R++T+T  YYR AQGI +VYD++   ++ ++   W  ++D Y+  +   K+L+GNK D+E
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMK-WVSDVDEYA-PEGVQKILIGNKADEE 118

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
            +R V  ++G   A+EYG  F E SA T  N+++ F  L   +L
Sbjct: 119 QKRQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLTELVL 162

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  144 bits (366), Expect = 3e-44
 Identities = 66/163 (40%), Positives = 99/163 (60%), Gaps = 3/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L + F   +F ++  PTI  D   K +++ G+   L I DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            F  +   Y R  +G ++VY +T R +F  +     + + +   +   I +LVGNK D E
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPI-VLVGNKCDLE 118

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           SERVV+ +EG   AR++GC F+E SAK RVNV + F +LV +I
Sbjct: 119 SERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREI 161

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  144 bits (365), Expect = 7e-44
 Identities = 64/163 (39%), Positives = 100/163 (61%), Gaps = 6/163 (3%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K++++GDSGVGK+SL+  + +  F  +   TIG DF  K V V  + + L IWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
           RF++L  ++YRGA   ++VYDVT   +F +L D W  E  + ++ +D      +++GNK+
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESL-DSWRDEFLIQASPRDPENFPFVVLGNKI 119

Query: 131 DKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEEL 172
           D E +R V+ K+   + +  G + + E SAK  +NV Q FE +
Sbjct: 120 DLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETI 162

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  143 bits (362), Expect = 2e-43
 Identities = 65/163 (39%), Positives = 100/163 (61%), Gaps = 3/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L + F   +F +E  PTI  D   K +++ G+   L I DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            F  +   Y R  +G ++VY +T R +F  ++    + + +   +   I +LVGNK D E
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPI-VLVGNKCDLE 120

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           +ERVV+ +EG   AR++GC F+E SAK R+NV + F +LV +I
Sbjct: 121 NERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREI 163

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  135 bits (340), Expect = 1e-39
 Identities = 76/218 (34%), Positives = 113/218 (51%), Gaps = 20/218 (9%)

Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDT 69
           F   FK++++GD GVGK++LL     D F E   PTIG     K ++   + +KL +WDT
Sbjct: 2   FMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDT 61

Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQE +R+L   YYRGA GI++VYD T R++   L++ W +E+   + +   I LLVGNK
Sbjct: 62  AGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPI-LLVGNK 120

Query: 130 VDKESERVVTKKEGINFAREYGCL---------------FIECSAK--TRVNVQQCFEEL 172
           +D   E+  +++      RE   L                +E SAK  T  NV + F+EL
Sbjct: 121 IDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKEL 180

Query: 173 VLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210
           + K+L+    L   ++  +       P E  A AS  C
Sbjct: 181 LRKLLEEIEKLVLKNELRQL-DRLNNPIEQAALASFNC 217

Length = 219

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  133 bits (335), Expect = 2e-39
 Identities = 66/176 (37%), Positives = 106/176 (60%), Gaps = 16/176 (9%)

Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYV--------DVGGK- 60
           +DYL KLL +GDSGVGK++ L  +T + F  +   T+G+DF+ K V           GK 
Sbjct: 1   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKA 60

Query: 61  -KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEI--DLYST 117
            ++ L +WDTAGQERFR+LT++++R A G ++++D+T   +F N+ + W  ++    Y  
Sbjct: 61  FRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRN-WMSQLQAHAYCE 119

Query: 118 NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
           N D +  L+GNK D   +R V++++    A +YG  + E SA T  NV++  E L+
Sbjct: 120 NPDIV--LIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLL 173

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  131 bits (330), Expect = 1e-38
 Identities = 58/148 (39%), Positives = 86/148 (58%), Gaps = 3/148 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FK+++IGDS VGK+ L   F +  F E    TIGVDF+ + V++ G+++K+ +WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 74  RFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           RFR ++   YYR    ++ VYDVT   +F +L   W +E + +S   +  ++LVGNK D 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLP-SWIEECEQHSLPNEVPRILVGNKCDL 121

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAK 160
             +  V       FA  +     E SAK
Sbjct: 122 REQIQVPTDLAQRFADAHSMPLFETSAK 149

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  129 bits (327), Expect = 3e-38
 Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 16/171 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++++GD  VGK+ LL+S+T++ F  E  PT+  D     V V GK++ L +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y      ++ + V    +F N+   W  EI  Y    +   +LVG K+D   
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHY--CPNVPIILVGTKIDLRD 118

Query: 132 --------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELV 173
                   ++ ++ +T +EG   A+E G + ++ECSA T+  +++ F+E +
Sbjct: 119 DGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAI 169

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  130 bits (329), Expect = 3e-38
 Identities = 69/203 (33%), Positives = 107/203 (52%), Gaps = 9/203 (4%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDV-GGKKLKLAIWDTAGQ 72
           FK+L+IGD GVGK+S++  +    F +    TIGVDF +K ++      ++L +WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEID---LYSTNQDCIKLLVGNK 129
           ERF  +T  YY+GA G I+V+DVTR  TF      W  ++D        +    LL+ NK
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEA-VLKWKADLDSKVTLPNGEPIPALLLANK 119

Query: 130 VDKESERVVTKKEGIN-FAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTPSLLAEGS 187
            D + ER+    E ++ F +E G + + E SAK  +N+++    LV  IL     L +  
Sbjct: 120 CDLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKGL-QSP 178

Query: 188 KGLKKNIFKQKPPEADAAASGCC 210
           +  + N+   K     + +  CC
Sbjct: 179 EPDEDNVIDLKQETTTSKSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score =  123 bits (310), Expect = 7e-36
 Identities = 68/163 (41%), Positives = 104/163 (63%), Gaps = 3/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L + F    F E+  PTI   ++ K V+V G++  L I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  +   Y +  QG ++VY +T + TF +L D+  + + +  T +D   +LVGNK D E
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLE 119

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            ERVV K++G N AR++GC F+E SAK ++NV + F +LV +I
Sbjct: 120 DERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  123 bits (311), Expect = 1e-35
 Identities = 68/172 (39%), Positives = 101/172 (58%), Gaps = 8/172 (4%)

Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP---TIGVDFKVKYVDVGGKKLKLA 65
           + +DYL K L++GDS VGK  +L S    + E  SP    +G+D+K   + + G+++KL 
Sbjct: 1   KAYDYLLKFLLVGDSDVGKGEILASLQDGSTE--SPYGYNMGIDYKTTTILLDGRRVKLQ 58

Query: 66  IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLL 125
           +WDT+GQ RF T+  SY RGAQGII+VYD+T R +F  + D W KEID ++      K+L
Sbjct: 59  LWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGI-DRWIKEIDEHAPG--VPKIL 115

Query: 126 VGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           VGN++    +R V  ++   +A   G  F E S     N+ + F EL   +L
Sbjct: 116 VGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVL 167

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  123 bits (309), Expect = 1e-35
 Identities = 66/165 (40%), Positives = 99/165 (60%), Gaps = 7/165 (4%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++++GD GVGKSSL+  + ++ F+  L  TIGV+F  K ++V G  + L IWDTAGQ
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64

Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNK 129
           ERFR+L + +YRG+   ++ + V    +F NLS  W KE   Y+  ++      +++GNK
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNK 123

Query: 130 VDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELV 173
           +D   ER V+ +E   + R+ G   + E SAK   NV   FEE V
Sbjct: 124 IDIP-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAV 167

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  122 bits (308), Expect = 2e-35
 Identities = 54/168 (32%), Positives = 92/168 (54%), Gaps = 6/168 (3%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++ +G+SGVGKS ++  +    F  +  PTIG+D+ VK V V  K++++  +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ----DCIKLLVGNKV 130
           +  + + +Y+  QG+++VYDVT R +F  L D W KE+           + + ++  NK+
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKI 120

Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           D    R V++ EG  +A   G  + E SA T   V + F+ L   I+D
Sbjct: 121 DLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIVD 168

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  121 bits (305), Expect = 5e-35
 Identities = 63/167 (37%), Positives = 93/167 (55%), Gaps = 17/167 (10%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L + F    F  +  PTI  D   K  ++ G+  +L I DTAGQE
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWARLDILDTAGQE 61

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK-------LLV 126
            F  +   Y R  +G ++V+ VT R +F        +E+D + T    +K       +LV
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSF--------EEVDKFHTQILRVKDRDEFPMILV 113

Query: 127 GNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
           GNK D E +R V+++EG   AR+    +IE SAK RVNV + F +LV
Sbjct: 114 GNKADLEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLV 160

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  118 bits (296), Expect = 2e-33
 Identities = 65/164 (39%), Positives = 95/164 (57%), Gaps = 5/164 (3%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD GVGK++L +    ++F E   PTI   ++ K V V G+   L + DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEE 59

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLY--STNQDCIKLLVGNKVDK 132
           +  L   + R  +G I+VY +T R TF  + + + ++I      +  D   ++VGNK DK
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDK 118

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
             ER V+ +EG   AR  GC FIE SAKT VNV++ F  LV  +
Sbjct: 119 VYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  116 bits (292), Expect = 3e-33
 Identities = 66/164 (40%), Positives = 103/164 (62%), Gaps = 4/164 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L + F    F ++  PTI  D   K ++V  ++  L I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  +   Y +  QG  +VY +T + +F +L D+  + + +  T +D   +LVGNK D E
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDT-EDVPMILVGNKCDLE 119

Query: 134 SERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEELVLKI 176
            ERVV+K+EG N AR++G C F+E SAK+++NV + F +LV +I
Sbjct: 120 DERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  116 bits (293), Expect = 4e-33
 Identities = 54/172 (31%), Positives = 90/172 (52%), Gaps = 17/172 (9%)

Query: 20  IGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL 78
           +GD  VGK+ LL+ +T++ F E+  PT+  ++    V+V GK ++L +WDTAGQE +  L
Sbjct: 4   VGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSAD-VEVDGKPVELGLWDTAGQEDYDRL 62

Query: 79  TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD------- 131
               Y      ++ + V    +F N+ + W  E+  +  N   I  LVG K+D       
Sbjct: 63  RPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPII--LVGTKLDLRNDKST 120

Query: 132 -----KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
                K+ +  VT ++G   A+  G + ++ECSA T+  V++ FEE +   L
Sbjct: 121 LEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIRAAL 172

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  116 bits (292), Expect = 4e-33
 Identities = 63/164 (38%), Positives = 95/164 (57%), Gaps = 3/164 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +K++++G  GVGKS+L + F S  F E+  PTI  DF  K ++V      L I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F ++   Y +  QG I+VY +  + TF ++  +   +I      +    +LVGNKVD E
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPM-RDQIVRVKGYEKVPIILVGNKVDLE 119

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           SER V+  EG   A E+GC F+E SAK++  V + F E+V ++ 
Sbjct: 120 SEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQMN 163

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  114 bits (287), Expect = 2e-32
 Identities = 63/164 (38%), Positives = 100/164 (60%), Gaps = 5/164 (3%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K++M+G  GVGKS+L L F  D F E+  PT   D   K V + G++++L I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQLNILDTAGQE 59

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVGNKVDK 132
            +  +  +Y+R  +G ++V+ +T  ++FT L++   + + +     D + L LVGNK D 
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRV--KEDDNVPLLLVGNKCDL 117

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           E +R V+ +E  N A ++G  ++E SAKTR NV + F +LV +I
Sbjct: 118 EDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREI 161

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  114 bits (286), Expect = 6e-32
 Identities = 68/198 (34%), Positives = 104/198 (52%), Gaps = 19/198 (9%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L + F  ++F +E  PTI   ++ K   +  +   L I DTAGQE
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAGQE 64

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVGNKVDK 132
            +  +   Y R  QG + VY +T R +F  ++    +E  L   ++D + + LVGNK D 
Sbjct: 65  EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASF--REQILRVKDKDRVPMILVGNKCDL 122

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKK 192
           +SER V+  EG   A+ +G  F+E SAK RVNV + F ELV +I              +K
Sbjct: 123 DSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREI--------------RK 168

Query: 193 NIFKQKPPEADAAASGCC 210
            + +  P +      G C
Sbjct: 169 YLKEDMPSQKQKKKGGLC 186

Length = 189

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  113 bits (285), Expect = 8e-32
 Identities = 65/176 (36%), Positives = 94/176 (53%), Gaps = 5/176 (2%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K+ ++G   VGKSSL + F   +F E   PTI   F  K +   G++  L I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFS-KIITYKGQEYHLEIVDTAGQDE 61

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +  L   Y  G  G I+VY VT R +F  +  ++ K +D+       I +LVGNK D   
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPI-VLVGNKSDLHM 120

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI--LDTPSLLAEGSK 188
           ER V+ +EG   A  +G  F+E SAK   NV++ FE L+ +I  ++ P    + SK
Sbjct: 121 ERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEIEKVENPLPPGQKSK 176

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score =  111 bits (278), Expect = 5e-31
 Identities = 62/163 (38%), Positives = 89/163 (54%), Gaps = 3/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +K++M+G  GVGKS++ + F S +F +   PTI   +K +   +  +   L I DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQAR-IDNEPALLDILDTAGQA 61

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            F  +   Y R  +G I+ Y VT R +F   S+ + + I      +D   +LVGNKVD E
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASE-FKELITRVRLTEDIPLVLVGNKVDLE 120

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            +R VT +EG N ARE+ C F E SA  R  +   F  LV +I
Sbjct: 121 QQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREI 163

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  110 bits (277), Expect = 7e-31
 Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 4/163 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI  D   K V + G+   L I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +  R +F ++   + ++I     + D   +LVGNK D  
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIH-TYREQIKRVKDSDDVPMVLVGNKCDLA 119

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V+ ++G + A+ YG  +IE SAKTR  V++ F  LV +I
Sbjct: 120 A-RTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  109 bits (275), Expect = 4e-30
 Identities = 57/179 (31%), Positives = 87/179 (48%), Gaps = 22/179 (12%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           D   K++++GD G GK+ LL+ +   +F EE  PT+  ++        GK ++LA+WDTA
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTA 60

Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVG 127
           GQE +  L    Y     I++ Y V    +  N+ D W  E+     N  C     +LVG
Sbjct: 61  GQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEV-----NHFCPGTPIVLVG 115

Query: 128 NKVD--KESERV----------VTKKEGINFAREYGC-LFIECSAKTRVNVQQCFEELV 173
            K D  K+   V          VT ++G + A+  G   +IECSAK   NV + F+  +
Sbjct: 116 LKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAI 174

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  105 bits (265), Expect = 6e-29
 Identities = 59/170 (34%), Positives = 95/170 (55%), Gaps = 8/170 (4%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVD-FKVKYVDVGGKKLKLAIWDTAGQ 72
           FKL+++GD G GK++ +    +  FE +   T+GV+   + +    GK ++  +WDTAGQ
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGK-IRFNVWDTAGQ 59

Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E+F  L   YY   Q  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD 
Sbjct: 60  EKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDI 116

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           +  +V  K + I F R+    + E SAK+  N ++ F  L  K+L  P+L
Sbjct: 117 KDRKV--KPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGNPNL 164

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  105 bits (263), Expect = 7e-29
 Identities = 61/158 (38%), Positives = 88/158 (55%), Gaps = 9/158 (5%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEE--LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           K++++GDS VGKS L+  F  D +E   LS      +K       GK + +  WDTAGQE
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAK-FEGKTILVDFWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RF+T+ +SYY  A   I+V+DVTR+ T+ NLS  W +E+  Y     CI  +V NK+D +
Sbjct: 61  RFQTMHASYYHKAHACILVFDVTRKITYKNLSK-WYEELREYRPEIPCI--VVANKIDLD 117

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171
               VT+K   NFA ++       SA    NV + F++
Sbjct: 118 PS--VTQK-KFNFAEKHNLPLYYVSAADGTNVVKLFQD 152

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  103 bits (259), Expect = 7e-28
 Identities = 64/201 (31%), Positives = 91/201 (45%), Gaps = 15/201 (7%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF--EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           K++M+G   VGK+SL+  +    F       TIG  F  K + VG + + L IWDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD-- 131
           R+  ++  YYRGA+  I+ YD+T   +F      W KE  L +  + C   L G K D  
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAK-FWVKE--LQNLEEHCKIYLCGTKSDLI 118

Query: 132 --KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKG 189
               S R V   +  +FA E      E S+KT  NV + F+++     D  S        
Sbjct: 119 EQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVA---EDFVSRANNQMNT 175

Query: 190 LKKNIFKQKPPEADAAASGCC 210
            K     QK    ++    CC
Sbjct: 176 EKGVDLGQKK---NSYFYSCC 193

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  102 bits (255), Expect = 1e-27
 Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 6/163 (3%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVK--YVDVGGKKLKLAIWDTAGQ 72
           K++++G+  VGKSS++  F    F ++   TIGVDF  K  ++    + ++L +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E F  +T +YYRGAQ  I+V+  T R++F  +   W ++++  +   D   +LV  K+D 
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIES-WKEKVE--AECGDIPMVLVQTKIDL 118

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLK 175
             + V+T +E    A+         S K   NV + FE L  K
Sbjct: 119 LDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  101 bits (254), Expect = 2e-27
 Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 11/165 (6%)

Query: 15  FKLLMIGDSGVGKSSLL--LSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
            K++++GD  VGKS+LL  L     +  E  P    ++    ++  GK  K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK----LLVGN 128
           E +  +   YYR  +  + V+D+        L      E                +LVGN
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDI----VILVLDVEEILEKQTKEIIHHAESGVPIILVGN 117

Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
           K+D    ++ T      FA+  G   I  SA+T  N+   F+ + 
Sbjct: 118 KIDLRDAKLKT-HVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 161

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score =  101 bits (253), Expect = 2e-27
 Identities = 52/164 (31%), Positives = 74/164 (45%), Gaps = 16/164 (9%)

Query: 20  IGDSGVGKSSLLLSFTSDNFEELS----PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           +G  GVGKSSLL +       E+S     T   D  VK +D G  KL   + DT G + F
Sbjct: 3   VGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLV--LVDTPGLDEF 60

Query: 76  -----RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
                  L     RGA  I++V D T R++  +   +  + +           +LVGNK+
Sbjct: 61  GGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIP----IILVGNKI 116

Query: 131 DKESERVVTKKEGINF-AREYGCLFIECSAKTRVNVQQCFEELV 173
           D   ER V +   +   A+  G    E SAKT   V + FE+L+
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLI 160

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score =  101 bits (253), Expect = 3e-27
 Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 3/161 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +++++ G  GVGKSSL+L F    F E   PTI   ++ + +        L I DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCSKSICTLQITDTTGSH 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTN-QDCIKLLVGNKVDK 132
           +F  +           I+VY +T + +   L  ++    ++   N +    +LVGNK D+
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDE 120

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
              R V+  EG   AR + C F+E SAKT  NVQ+ F+EL+
Sbjct: 121 SPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQELL 161

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  100 bits (249), Expect = 1e-26
 Identities = 60/134 (44%), Positives = 83/134 (61%), Gaps = 6/134 (4%)

Query: 45  TIGVDF--KVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFT 102
           TIG+DF  K  Y+D G  +L+L  WDTAGQERFR+L  SY R +   I+VYD+T R +F 
Sbjct: 12  TIGIDFLSKTLYLDEGPVRLQL--WDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFE 69

Query: 103 NLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR 162
           N +  W ++I L    +D I  LVGNK D    R VT +EG+  A+EY  +F E SAK  
Sbjct: 70  NTTK-WIQDI-LNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAG 127

Query: 163 VNVQQCFEELVLKI 176
            N++  F+++  K+
Sbjct: 128 HNIKVLFKKIAAKL 141

Length = 176

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  100 bits (251), Expect = 2e-26
 Identities = 56/169 (33%), Positives = 92/169 (54%), Gaps = 6/169 (3%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++GD GVGK++ +    +  FE +  PT+GV+            +   +WDTAGQE
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  L   YY   Q  I+++DVT R T+ N+ + W +  D+    ++   +LVGNKVD +
Sbjct: 70  KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPN-WHR--DIVRVCENIPIVLVGNKVDVK 126

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
             +V  K   I F R+    + + SAK+  N ++ F  L  ++ + P+L
Sbjct: 127 DRQV--KARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDPNL 173

Length = 215

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  100 bits (251), Expect = 2e-26
 Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 5/167 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDV-GGKKLKLAIWDTAGQ 72
            K++++GD   GK+SL+  F  + F +    TIG+DF  + + + G   + L +WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC--IKLLVGNKV 130
           +    +   Y  GAQ + +VYD+T   +F NL D W   +   +   +     +LVGNK 
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLED-WLSVVKKVNEESETKPKMVLVGNKT 119

Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           D E  R VT ++   FA+E     I  SAKT   V  CF+ +  ++L
Sbjct: 120 DLEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELL 166

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 97.9 bits (244), Expect = 6e-26
 Identities = 55/165 (33%), Positives = 101/165 (61%), Gaps = 4/165 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +K++++G  GVGKS+L + F  + F E   PTI   ++ K V++ G++  L I DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYR-KQVEIDGRQCDLEILDTAGTE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  +   Y +  QG ++VY VT   +   L ++  + + +  ++   + +LVGNK D E
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPM-VLVGNKADLE 119

Query: 134 SERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            +R V++++G++ ++++G + F E SA+ R NV + F +LV +I+
Sbjct: 120 DDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 99.1 bits (247), Expect = 8e-26
 Identities = 64/179 (35%), Positives = 98/179 (54%), Gaps = 11/179 (6%)

Query: 8   QQEFDY-LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVD--VGGKKLK 63
           QQ  DY  FKL+++GD G GK++ +    +  FE +  PTIGV+  V  +D      K++
Sbjct: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCGKIR 63

Query: 64  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
              WDTAGQE+F  L   YY   Q  I+++DVT R T+ N+   W +  DL    ++   
Sbjct: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHR--DLCRVCENIPI 120

Query: 124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           +L GNKVD ++ +V  K + + F R+    + E SAK+  N ++ F  L  K+   P+L
Sbjct: 121 VLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL 177

Length = 219

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 97.7 bits (243), Expect = 3e-25
 Identities = 68/230 (29%), Positives = 105/230 (45%), Gaps = 46/230 (20%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           K++++GD  VGK+SLL  +    F++   T+G  F +K          ++IWDTAG+E+F
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQ----WGPYNISIWDTAGREQF 57

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVD--- 131
             L S Y RGA  +I+ YDV+   +   L     + + L  T N+DC+  +VGNK+D   
Sbjct: 58  HGLGSMYCRGAAAVILTYDVSNVQSLEEL---EDRFLGLTDTANEDCLFAVVGNKLDLTE 114

Query: 132 ----------------KESERVVTKKEGINFARE---YGCL-----------FIECSAKT 161
                            E +R VT ++   F +    Y  L             E SAKT
Sbjct: 115 EGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKT 174

Query: 162 RVNVQQCFEELVLKILDTPSLLAEGSKGLKK-NIFKQKPPEADAAASGCC 210
             NV + FE L   +L  P +LA+ ++  +         P+   + S CC
Sbjct: 175 GYNVDELFEYLFNLVL--PLILAQRAEANRTQGTVNLPNPK--RSKSKCC 220

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 95.7 bits (238), Expect = 5e-25
 Identities = 62/161 (38%), Positives = 91/161 (56%), Gaps = 12/161 (7%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++++GD  VGK+ L+  F  D F++    TIGVDF+++  +V G    L +WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTN----LSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           F+ + S+YYRGAQ II+V+D+T   +  +    L D   KE D  S     +  LVG K 
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDA-LKENDPSS----VLLFLVGTKK 116

Query: 131 DKES--ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169
           D  S  +  + +++ I  ARE    +   SA T  NV+  F
Sbjct: 117 DLSSPAQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFF 157

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 93.3 bits (232), Expect = 4e-24
 Identities = 60/172 (34%), Positives = 93/172 (54%), Gaps = 23/172 (13%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE- 73
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 61

Query: 74  --RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
             R R L+   Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D
Sbjct: 62  YDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 116

Query: 132 ------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                       K  +  V  +EG   A + G   ++ECSAKT+  V++ FE
Sbjct: 117 LRNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFE 168

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 92.6 bits (230), Expect = 6e-24
 Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 6/162 (3%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF---EELSPTIGVDFKVKYV--DVGGKKLKLAIWDTA 70
           +  ++GD  VGKS+L+  F SD     +  + T G D  VK V        ++L I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQE F  +  + +     + +VYDVT   +F N S  W   +  +S       +LVGNK 
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSR-WINRVRTHSHGLHTPGVLVGNKC 120

Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172
           D    R V   +    A+     F E SAK  V  +  F  L
Sbjct: 121 DLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSL 162

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 92.5 bits (230), Expect = 9e-24
 Identities = 53/173 (30%), Positives = 90/173 (52%), Gaps = 17/173 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K +++GD  VGK+SL++S+T++ +  E  PT   +F V  V V GK ++L + DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVV-VLVDGKPVRLQLCDTAGQDE 60

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG------- 127
           F  L    Y      ++ + V    +F N+S+ W  EI  ++     I  LVG       
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPII--LVGTQADLRT 118

Query: 128 -----NKVDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEELVL 174
                 ++ +  E+ V++      A + G C +IECSA T+ N+++ F+  +L
Sbjct: 119 DVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL 171

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 92.5 bits (230), Expect = 1e-23
 Identities = 51/171 (29%), Positives = 92/171 (53%), Gaps = 9/171 (5%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K+ ++GD+ +GK+SL++ +    F EE   T+GV+F  K + + G ++  +IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           F  +     + A  I+ ++D+TR+ T  ++ + W ++      N+  I +LVG K D  +
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKE-WYRQA--RGFNKTAIPILVGTKYDLFA 118

Query: 135 ERVVTKKEGI-NFAREYG----CLFIECSAKTRVNVQQCFEELVLKILDTP 180
           +    ++E I   AR+Y        I CS    +NVQ+ F+ ++ K+ D P
Sbjct: 119 DLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKFVLAKVFDLP 169

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 91.6 bits (228), Expect = 2e-23
 Identities = 56/163 (34%), Positives = 80/163 (49%), Gaps = 7/163 (4%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K+ ++G SGVGKS+L + F +  F  E  P +   +  + V + G+++ L I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYS-RQVTIDGEQVSLEIQDTPGQQQ 59

Query: 75  FRT--LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK-LLVGNKVD 131
                      R A G ++VY +T R +F  +S +    I         I  +LVGNK D
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQL-IREIKKRDGEIPVILVGNKAD 118

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVN-VQQCFEELV 173
               R V+ +EG   A E GCLF E SA      VQ  F EL 
Sbjct: 119 LLHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELC 161

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 88.9 bits (220), Expect = 2e-22
 Identities = 57/177 (32%), Positives = 94/177 (53%), Gaps = 17/177 (9%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+ +D F EE  PT+   + V  V VGGK+  L ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVS-VTVGGKQYLLGLYDTAGQE 59

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + V    +F N+ + W  E+  Y+ N     LL+G ++D  
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN--VPYLLIGTQIDLR 117

Query: 134 ------------SERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEELVLKIL 177
                        E+ +T ++G   A+E G C ++ECSA T+  ++  F+E ++ IL
Sbjct: 118 DDPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 87.4 bits (216), Expect = 2e-21
 Identities = 52/164 (31%), Positives = 86/164 (52%), Gaps = 6/164 (3%)

Query: 20  IGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL 78
           +GD G GK++ +    +  FE+    T+GV+            ++  +WDTAGQE+F  L
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 79  TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV 138
              YY   Q  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD +  +V 
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDVKDRKV- 116

Query: 139 TKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
            K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 117 -KAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 159

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 86.3 bits (214), Expect = 5e-21
 Identities = 57/162 (35%), Positives = 85/162 (52%), Gaps = 6/162 (3%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           ++++++GDSGVGKSSL   FT+  +E+ +    G D   + V V G++  L ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVGNKVD 131
               L  S  +     ++VY VT R +F   S++    I L    Q  D   +LVGNK D
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASEL---RIQLRRARQAEDIPIILVGNKSD 117

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
               R V+ +EG   A  + C FIE SA  + NV + FE +V
Sbjct: 118 LVRSREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIV 159

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 84.6 bits (210), Expect = 7e-21
 Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 16/165 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           ++LM+G  G GK+++L            PTIG  F V+ V+   K +K  +WD  GQ++ 
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTTIPTIG--FNVETVEY--KNVKFTVWDVGGQDKI 56

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEI--DLYSTNQ--DCIKLLVGNKVD 131
           R L   YY    G+I V D + R+         AK     L +  +      L++ NK D
Sbjct: 57  RPLWKHYYENTDGLIFVVDSSDRERI-----EEAKNELHKLLNEEELKGAPLLILANKQD 111

Query: 132 KE---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
                +E  + +  G+   +        CSA T   + +  + L+
Sbjct: 112 LPGALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLI 156

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 84.2 bits (208), Expect = 1e-20
 Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 17/176 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQED 61

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y      ++ + V    +F N+ + W  EI  +        LLVG ++D   
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPF--LLVGTQIDLRD 119

Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
                    K  ++ +T + G   AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 120 DPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 175

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 83.4 bits (206), Expect = 4e-20
 Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 17/169 (10%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDF-KVKYVDVGGKKLKLAIWDTAGQE 73
           K++++GD   GK+SLL  FT   F ++  PT+  ++    +VD  G  ++L++WDTAGQE
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVD--GLAVELSLWDTAGQE 59

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVGNKVD- 131
            F  L S  Y     I++ + V   D+  N+   W  EI     +   +KL LV  K D 
Sbjct: 60  EFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEI---RHHCPGVKLVLVALKCDL 116

Query: 132 --KESERVVTKK-----EGINFAREYG-CLFIECSAKTRVNVQQCFEEL 172
               +ER          EG+  A+    C ++ECSAK    V + F E 
Sbjct: 117 REPRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEA 165

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 80.6 bits (199), Expect = 3e-19
 Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 17/172 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K +++GD  VGK+ LL+S+T++ F  E  PT+  D     V V GK + L +WDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 61

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV---- 130
           +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+    
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLRD 119

Query: 131 DKES-ERVVTKK-------EGINFAREYGCL-FIECSAKTRVNVQQCFEELV 173
           DK++ E++  KK       +G+  A+E G + ++ECSA T+  ++  F+E +
Sbjct: 120 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 171

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 79.9 bits (197), Expect = 6e-19
 Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 15/167 (8%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K + +GD  VGK+ +L+S+TS+ F  +  PT+  +F    V V G  + L +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGNTVNLGLWDTAGQED 61

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +  L    YRGA   ++ + +  + ++ N+   W  E+  Y+     +  LVG K+D   
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIV--LVGTKLDLRD 119

Query: 135 ER----------VVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFE 170
           ++           +T  +G    ++ G   +IECS+KT+ NV+  F+
Sbjct: 120 DKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFD 166

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 80.3 bits (198), Expect = 7e-19
 Identities = 58/167 (34%), Positives = 81/167 (48%), Gaps = 15/167 (8%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+SLL  FT   F EE  PT+  ++ V    V GK ++LA+WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEE 61

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +  L    Y  A  I++ + +   D+  N+   W +E+  Y  N   I  LVG K D   
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVI--LVGLKKDLRQ 119

Query: 135 E----------RVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
           E            V  ++    AR  G   ++ECSA T   V   FE
Sbjct: 120 EAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFE 166

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 77.7 bits (191), Expect = 6e-18
 Identities = 48/176 (27%), Positives = 89/176 (50%), Gaps = 17/176 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K +++GD  VGK+ LL+ +T++ F +E  PT+  ++  +   V G+ + L +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTA-VDGRTVSLNLWDTAGQEE 63

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L +  Y      I+ + +    ++ N+   W  E+  +  N     LLVG K D   
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPI--LLVGTKKDLRN 121

Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
                    ++ +  +T ++G   A++   + ++ECSA  +  V++ F E V  +L
Sbjct: 122 DADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVL 177

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 73.2 bits (180), Expect = 2e-16
 Identities = 47/170 (27%), Positives = 90/170 (52%), Gaps = 18/170 (10%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++++GDS  GK++LL  F  D+F E   PT+  ++     +V  ++++L++WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTAS-FEVDKQRIELSLWDTSGSPY 61

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +  +    Y  +  +++ +D++R +T  ++   W  E+  +  N     LLVG K D  +
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPV--LLVGCKSDLRT 119

Query: 135 E------------RVVTKKEGINFAREYGCL-FIECSAKT-RVNVQQCFE 170
           +              V+ ++G N A++ G   ++ECSAKT   +V+  FE
Sbjct: 120 DLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFE 169

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 73.3 bits (180), Expect = 3e-16
 Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 2/159 (1%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           +L+ +G +GVGK++L+  F  D FE        +   K  +V G K+ + I DT+G   F
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYSF 60

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135
             +     +      +VY V   ++F  +  +  + +++       I ++VGNK+D  +E
Sbjct: 61  PAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPI-VVVGNKIDSLAE 119

Query: 136 RVVTKKEGINFAR-EYGCLFIECSAKTRVNVQQCFEELV 173
           R V   + ++    ++   F+E SAK   NV + F+EL+
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELL 158

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 71.6 bits (176), Expect = 7e-16
 Identities = 52/169 (30%), Positives = 75/169 (44%), Gaps = 29/169 (17%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSP------TIGVDFKVKYVDVGGKKLKLAIWDT 69
           ++++IGD GVGKSSL++S  S+ F E  P      TI  D   + V          I DT
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPT-------TIVDT 56

Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLV 126
           + + + R   ++  R A  I +VY V R  T   +   W   I      +  +K   +LV
Sbjct: 57  SSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLI-----RRLGVKVPIILV 111

Query: 127 GNKVDKESERVVTKKEG--INFAREY----GCLFIECSAKTRVNVQQCF 169
           GNK D          E   +    E+     C  +ECSAKT +NV + F
Sbjct: 112 GNKSDLRDGSSQAGLEEEMLPIMNEFREIETC--VECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 67.8 bits (165), Expect = 3e-14
 Identities = 44/163 (26%), Positives = 83/163 (50%), Gaps = 17/163 (10%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++++GDS  GK++LL  F  D F E   PT+  ++   + ++  ++++L++WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 65

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +  +    Y  +  +++ +D++R +T  ++   W  EI  +  N     LLVG K D  +
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKM--LLVGCKSDLRT 123

Query: 135 ERV------------VTKKEGINFAREYGCL-FIECSAKTRVN 164
           +              V+  +G N A++ G   +IECSA    N
Sbjct: 124 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 65.5 bits (160), Expect = 4e-14
 Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 5/117 (4%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K+++IGD G GKSSLL       F  E     G    V  ++V G    L IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDV--WAKEIDLYSTNQDCIKLLVGNK 129
            +     + + A  I++VYD+T R++   +S +  W   +         I  LVGNK
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVI--LVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 67.2 bits (165), Expect = 4e-14
 Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 15/122 (12%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++L++G    GK+++L            PTIG  F V+ V    K +K  +WD  GQE 
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEIVTTIPTIG--FNVETVTY--KNVKFTVWDVGGQES 70

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS-----TNQDCIKLLVGNK 129
            R L  +Y+     +I V D   RD         AKE +L++        D   L++ NK
Sbjct: 71  LRPLWRNYFPNTDAVIFVVDSADRDRIEE-----AKE-ELHALLNEEELADAPLLILANK 124

Query: 130 VD 131
            D
Sbjct: 125 QD 126

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 23/158 (14%)

Query: 19  MIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT 77
           ++G    GK++L+    S  F E+  PT+G  F ++ V  G   +K  +WD  GQ RFR+
Sbjct: 4   LVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRFRS 59

Query: 78  LTSSYYRGAQGIIMVYDVTRRDTF----TNLSDVWAKEIDLYSTNQDCIKLLV-GNKVDK 132
           +   Y RG   I+ V D   R+        L D+  K       + + I LLV GNK D 
Sbjct: 60  MWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEK------PSLEGIPLLVLGNKNDL 113

Query: 133 E---SERVVTKKEGIN--FAREYGCLFIECSAKTRVNV 165
               S   + ++  +     RE  C  I  SAK + N+
Sbjct: 114 PGALSVDELIEQMNLKSITDREVSCYSI--SAKEKTNI 149

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 66.7 bits (163), Expect = 2e-13
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 22/173 (12%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ- 72
           ++++++G S VGK++++  F    FEE  +PTI  DF  K   + G+  +L I DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 73  -----ERFRTLTSSYYRGAQGIIMVYDVTRRDTFT-------NLSDVWAKEIDLYSTNQD 120
                 R   LT   +      I+V+ +  R++F         + +  +   +    N  
Sbjct: 60  PFPAMRRLSILTGDVF------ILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVK 113

Query: 121 CIKLLVGNKVDKESERVVTKKEGINF-AREYGCLFIECSAKTRVNVQQCFEEL 172
              ++ GNK D++  R V + E       +  C + E SAK   N+ + F  L
Sbjct: 114 IPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRAL 166

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 66.4 bits (162), Expect = 5e-13
 Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 15/111 (13%)

Query: 16  KLLMIGDSGVGKSSLL-LSFTSDNFEELSPTIGVDFKVKYVDVGG-------------KK 61
           ++L++GDSGVGKSSL+ L     +      TIG    VK++  G              + 
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEI 112
             + +WD +G ER++   S +Y    G+I V+D+++R T T+L   WA E+
Sbjct: 83  FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQK-WASEV 132

Length = 334

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 64.7 bits (157), Expect = 8e-13
 Identities = 41/163 (25%), Positives = 86/163 (52%), Gaps = 17/163 (10%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++++GD+  GK++LL  F  DN+ E   PT+  ++   + ++   +++L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASF-EIDKHRIELNMWDTSGSSY 61

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +  +    Y  +  +++ +D++R +T  ++   W  E   +  N   +  LVG K+D  +
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLV--LVGCKLDMRT 119

Query: 135 ----------ERV--VTKKEGINFAREYGCL-FIECSAKTRVN 164
                     +R+  VT ++G   AR+ G + ++ECS++   N
Sbjct: 120 DLSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSEN 162

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 61.6 bits (149), Expect = 5e-12
 Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 11/119 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           +++ +G  G GK+++L     D F +  PTIG  F V+ V+   K LK  IWD  G+ + 
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIG--FNVETVEY--KNLKFTIWDVGGKHKL 56

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAK---EIDLYSTNQDCIKLLVGNKVD 131
           R L   YY   Q ++ V D + RD  +      AK   E +L    +D + L+  NK D
Sbjct: 57  RPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKEL----RDALLLIFANKQD 111

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 61.1 bits (148), Expect = 1e-11
 Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 29/148 (19%)

Query: 16  KLLMIGDSGVGKSSLL-LSFTSDNFEELSPTIGVDFKVKYVDVGG-----KKLKLAIWDT 69
           K+L++GDSGVGKSSL+ L   +      S T+G    V++   G      K   + +WD 
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 70  AGQ----ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEI---DLYS-----T 117
            G     E  ++  + +Y    GII V+D+T + +  NL   W+ E    D +      T
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYR-WSLEALNRDTFPAGLLVT 120

Query: 118 NQDCIK----------LLVGNKVDKESE 135
           N D             L++G K+D+  E
Sbjct: 121 NGDYDSEQFAGNPVPLLVIGTKLDQIPE 148

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           +K++++G    GK+++L  F        SPTIG +  V+ +    K ++  +WD  GQE 
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSN--VEEIVY--KNIRFLMWDIGGQES 71

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFT 102
            R+  ++YY     +I+V D T R+   
Sbjct: 72  LRSSWNTYYTNTDAVILVIDSTDRERLP 99

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 59.5 bits (144), Expect = 2e-11
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           ++LM+G    GK+++L            PTIG  F V+ V    K +   +WD  GQ++ 
Sbjct: 15  RILMVGLDAAGKTTILYKLKLGESVTTIPTIG--FNVETVTY--KNISFTVWDVGGQDKI 70

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           R L   YY   QG+I V D   RD      +   + ++     +D + L+  NK D
Sbjct: 71  RPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLN-EDELRDAVILVFANKQD 125

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 57.9 bits (140), Expect = 9e-11
 Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 15/121 (12%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           ++LM+G    GK+++L            PT+G  F V+ V    K +K  +WD  GQ++ 
Sbjct: 11  RILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDKI 66

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST-----NQDCIKLLVGNKV 130
           R L   YY G QG+I V D   RD         A++ +L+        +D + L+  NK 
Sbjct: 67  RPLWRHYYTGTQGLIFVVDSADRDRIDE-----ARQ-ELHRIINDREMRDALLLVFANKQ 120

Query: 131 D 131
           D
Sbjct: 121 D 121

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 15/157 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGV---DFKVKYVDVGGKKLKLAIWDTAG 71
           KL+++G  GVGK+SL      + F+     T G+   D+K+   +   KK++L +WD  G
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPE--RKKIRLNVWDFGG 60

Query: 72  QERFRTLTSSYYRGAQGI-IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           QE +   T  ++  ++ + ++V+D+   D  + +   W ++I  +      I  LVG  +
Sbjct: 61  QEIYHA-THQFFLTSRSLYLLVFDLRTGDEVSRV-PYWLRQIKAFGGVSPVI--LVGTHI 116

Query: 131 DKESERVVTKKEGIN---FAREYGCLFIECSAKTRVN 164
           D+  +  + KK  +N    A      F+ C     + 
Sbjct: 117 DESCDEDILKK-ALNKKFPAIINDIHFVSCKNGKGIA 152

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 22/171 (12%)

Query: 18  LMIGDSGVGKSSLL----LSFTSD----NFEELSPTIGVDFKVKYVDVGGKKLKLAIWDT 69
           L++G    GK++ L      F+ +    N  +++PT+G++  +  ++VG  +L    WD 
Sbjct: 3   LILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLN--IGTIEVGKARLMF--WDL 58

Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
            GQE  R+L   YY  + G+I V D T R+ F      + K I+     +    L++ NK
Sbjct: 59  GGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVIN-NEALEGVPLLVLANK 117

Query: 130 VDKES-------ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
            D          + V      +   R+  CL    SA     V++  E LV
Sbjct: 118 QDLPDALSVAEIKEVFDDCIALIGRRD--CLVQPVSALEGEGVEEGIEWLV 166

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 57.2 bits (138), Expect = 3e-10
 Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 21/175 (12%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD----- 68
            ++ ++G  GVGK++++  F +  F EE  PT         V + G+   L I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 69  ----TAGQE----RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDL-YSTNQ 119
               TAGQE    RFR L     R ++  I+VYD+   D+F  +  +  + ++   + N+
Sbjct: 61  RYPGTAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115

Query: 120 DCIKLLVGNKVDKESERVVTKKEGINFARE-YGCLFIECSAKTRVNVQQCFEELV 173
           +   ++VGNK D++  R   +       R+ + C ++ECSAK   ++   F+EL+
Sbjct: 116 EPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELL 170

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 56.0 bits (135), Expect = 5e-10
 Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 14/152 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           ++LM+G    GK+++L            PTIG  F V+ V+   K LK  +WD  GQ++ 
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEVVTTIPTIG--FNVETVEY--KNLKFTMWDVGGQDKL 74

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAK---EIDLYSTNQDCIKLLVGNKVD- 131
           R L   YY+   G+I V D   R+   +  +   +   E +L    +D + L+  NK D 
Sbjct: 75  RPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDEL----RDAVLLVFANKQDL 130

Query: 132 --KESERVVTKKEGINFAREYGCLFIECSAKT 161
               S   VT+K G++  R+       C A T
Sbjct: 131 PNAMSTTEVTEKLGLHSVRQRNWYIQGCCATT 162

Length = 182

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 57.0 bits (137), Expect = 5e-10
 Identities = 43/187 (22%), Positives = 90/187 (48%), Gaps = 18/187 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+++L     D + E   PT+  ++    ++   ++++L++WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAC-LETEEQRVELSLWDTSGSPY 73

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  +    Y  +  +++ +D++R + F +    W  EI  Y  +     LL+G K D   
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRI--LLIGCKTDLRT 131

Query: 132 ---------KESERVVTKKEGINFAREYGC-LFIECSAKT-RVNVQQCFEELVLKILDTP 180
                     + +  ++ ++G   A++ G   ++ECSA T   ++   F    L  ++  
Sbjct: 132 DLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCINKL 191

Query: 181 SLLAEGS 187
           S LA+ S
Sbjct: 192 SPLAKKS 198

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 55.5 bits (134), Expect = 6e-10
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
          ++L++G    GKS+LL            PT+G  F V+ + +  K L L +WD  GQE+ 
Sbjct: 1  QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVG--FNVEMLQLE-KHLSLTVWDVGGQEKM 57

Query: 76 RTLTSSYYRGAQGIIMVYDVTRR 98
          RT+   Y     G++ V D +  
Sbjct: 58 RTVWKCYLENTDGLVYVVDSSDE 80

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 2/118 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVG-GKKLKLAIWDTAGQE 73
             ++M+G    GK+++L     + F    PT G + +   V +G  K +    WD  GQE
Sbjct: 4   LHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQE 63

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           + R L  SY R   GI+ V D    +     +     +I  +S NQ    L++ NK D
Sbjct: 64  KLRPLWKSYTRCTDGIVFVVDSVDVERMEE-AKTELHKITKFSENQGVPVLVLANKQD 120

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 54.6 bits (131), Expect = 2e-09
 Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 8/137 (5%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           ++LM+G    GK+++L            PTIG  F V+ V+   K +   +WD  GQ++ 
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD---K 132
           R L   Y++  QG+I V D   RD      D   + ++     +D + L+  NK D    
Sbjct: 75  RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN-EDELRDAVLLVFANKQDLPNA 133

Query: 133 ESERVVTKKEGINFARE 149
            +   +T K G++  R+
Sbjct: 134 MNAAEITDKLGLHSLRQ 150

Length = 181

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 14/140 (10%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           ++LM+G    GK+++L            PTIG  F V+ V+   K +   +WD  GQ++ 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKI 57

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAK---EIDLYSTNQDCIKLLVGNKVD- 131
           R L   Y++  QG+I V D   R+      +   +   E +L    +D + L+  NK D 
Sbjct: 58  RPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDEL----RDAVLLVFANKQDL 113

Query: 132 --KESERVVTKKEGINFARE 149
               S   VT K G++  R 
Sbjct: 114 PNAMSAAEVTDKLGLHSLRN 133

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           ++LM+G    GK+++L  F  ++   +SPT+G  F +K ++  G   KL IWD  GQ+ 
Sbjct: 15 MRILMLGLDNAGKTTILKKFNGEDISTISPTLG--FNIKTLEYNG--YKLNIWDVGGQKS 70

Query: 75 FRTLTSSYYRGAQGIIMVYDVTRR 98
           R+   +Y+     +I V D + R
Sbjct: 71 LRSYWRNYFESTDALIWVVDSSDR 94

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           ++L++G    GK+++L    S++   ++PT G  F +K V   G KL +  WD  GQ + 
Sbjct: 17  RILLLGLDNAGKTTILKQLASEDISHITPTQG--FNIKNVQADGFKLNV--WDIGGQRKI 72

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTF 101
           R    +Y+     +I V D   R  F
Sbjct: 73  RPYWRNYFENTDVLIYVIDSADRKRF 98

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
          ++L++G  G GK+++L            PTIG  F V+ V    K LK  +WD  GQ   
Sbjct: 1  RILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGQTSI 56

Query: 76 RTLTSSYYRGAQGIIMVYDVTRRD 99
          R     YY     II V D T RD
Sbjct: 57 RPYWRCYYSNTDAIIYVVDSTDRD 80

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 44.4 bits (105), Expect = 8e-06
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 25/131 (19%)

Query: 16  KLLMIGDSGVGKSSLL------------LSFTSDNFEELSP-TIGVDF-KVKYVDVGGKK 61
           K+++IG  G GK++ +               +S + +   P T+ +DF  ++  +     
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE----D 67

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
             + ++ T GQERF+ +     RGA G I++ D +R  TF       A+EI  + T+++ 
Sbjct: 68  TGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFH------AEEIIDFLTSRNP 121

Query: 122 IKLLVG-NKVD 131
           I ++V  NK D
Sbjct: 122 IPVVVAINKQD 132

Length = 187

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 44.0 bits (104), Expect = 9e-06
 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 17/123 (13%)

Query: 17  LLMIGDSGVGKSSLL--LSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           +L++G    GK++++  L  ++   + + PT+G  F V+    G   L    +D +GQ +
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVG--FNVESFKKGN--LSFTAFDMSGQGK 57

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK------LLVGN 128
           +R L   YY+  QGII V D + R       D    E++L   + D IK      L   N
Sbjct: 58  YRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKD----ELELLLNHPD-IKHRRIPILFYAN 112

Query: 129 KVD 131
           K+D
Sbjct: 113 KMD 115

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 35/164 (21%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 20  IGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVG-GKKLKLAIWDTAG------Q 72
            G   VGKSSLL +    N   +SP  G        +        + + DT G       
Sbjct: 3   FGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEEGGL 62

Query: 73  ERFRT-LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
            R R          A  +++V D           +  AK   L    +  +  LV NK+D
Sbjct: 63  GRERVEEARQVADRADLVLLVVDSDLT-----PVEEEAKLGLLRERGKPVL--LVLNKID 115

Query: 132 K--ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
              ESE     +E            I  SA     + +  +++ 
Sbjct: 116 LVPESEEEELLRERKLELL-PDLPVIAVSALPGEGIDELRKKIA 158

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1

 Score = 40.8 bits (96), Expect = 9e-05
 Identities = 37/172 (21%), Positives = 65/172 (37%), Gaps = 26/172 (15%)

Query: 19  MIGDSGVGKSSLLLSFTSDN-------FEELSPTIGV-----DFKVKYVDVGGKKLKLAI 66
           ++G   VGKS+LL + TS         F  L P +GV        ++ +D+ G      +
Sbjct: 2   LVGLPNVGKSTLLSALTSAKVEIASYPFTTLEPNVGVFEFGDGVDIQIIDLPG------L 55

Query: 67  WDTAGQER--FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWA--KEIDLYSTNQDCI 122
            D A + R     + +  YR    I+ V D +       L D     +E+          
Sbjct: 56  LDGASEGRGLGEQILAHLYRS-DLILHVIDASEDCVGDPLEDQKTLNEEVSGSFLFLKNK 114

Query: 123 KLLVG-NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
             ++  NK+D  SE  + + +     R      +  SA TR+ + +    + 
Sbjct: 115 PEMIVANKIDMASENNLKRLKLDKLKRGI--PVVPTSALTRLGLDRVIRTIR 164

The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 30/135 (22%)

Query: 17  LLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGV--------DFKVKYVDVGGKKLKLAIW 67
           +L++G  G GK+SLL S +S+   E   PT G         D  ++ +++GG        
Sbjct: 2   ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGG-------- 53

Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ---DCIKL 124
                +  R     Y  G+QG+I V D    +         A++ +L+   Q   D   +
Sbjct: 54  ----SQNLRKYWKRYLSGSQGLIFVVDSADSERLP-----LARQ-ELHQLLQHPPDLPLV 103

Query: 125 LVGNKVDKESERVVT 139
           ++ NK D  + R V 
Sbjct: 104 VLANKQDLPAARSVQ 118

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 43/171 (25%), Positives = 64/171 (37%), Gaps = 52/171 (30%)

Query: 15  FKLLMIGDSGVGKSSLLLSF--------------TSDNFEELSPTIGVDFKVKYVDVGGK 60
            K+++IG   VGKSSLL +               T D  EE             +++ G 
Sbjct: 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEE------------DINLNGI 265

Query: 61  KLKLAIWDTAGQ-------ERF---RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAK 110
            ++L   DTAG        ER    R   +     A  ++ V D ++     +L      
Sbjct: 266 PVRLV--DTAGIRETDDVVERIGIERAKKAI--EEADLVLFVLDASQPLDKEDL-----A 316

Query: 111 EIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT 161
            I+L    +  I  +V NK D     +V+K E  +     G   I  SAKT
Sbjct: 317 LIELLPKKKPII--VVLNKAD-----LVSKIELESEKLANGDAIISISAKT 360

Length = 454

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 13/122 (10%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           K++ +G    GK++LL     D   +  PT+      + + +G  K     +D  G E+ 
Sbjct: 21  KIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLH--PTSEELTIGNVKFT--TFDLGGHEQA 76

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTN----LSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           R +   Y+    GI+ + D    + F      L  +   E        +   L++GNK+D
Sbjct: 77  RRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDE-----ELANVPILILGNKID 131

Query: 132 KE 133
           K 
Sbjct: 132 KP 133

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 12/165 (7%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           KL ++G+   GKS+L+  + + ++ +L    G  FK K V V G+   L I D  G    
Sbjct: 2   KLGIVGNLRSGKSALVHRYLTGSYVQLESPEGGRFK-KEVLVDGQSHLLLIRDEGGA--- 57

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135
               + +      +I V+ +    +F  +      ++  Y    +   +LVG + D  S 
Sbjct: 58  --PDAQFAGWVDAVIFVFSLEDEASFQTVYR-LYHQLSSYRNISEIPLILVGTQ-DAISA 113

Query: 136 ---RVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEELVLKI 176
              RV+          +   C + E  A   +NV++ F+E   KI
Sbjct: 114 SNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF--EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71
           +F   ++G  G GKS+LL +F   +F     SPTI   + V  V+V G++  L + +   
Sbjct: 4   VFLCFVLGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVPGQEKYLILREVGE 63

Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTF 101
            E    L  +         +VYD +  ++F
Sbjct: 64  DEEAILLNDAELAACDVACLVYDSSDPNSF 93

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain

 Score = 36.7 bits (86), Expect = 0.003
 Identities = 36/151 (23%), Positives = 52/151 (34%), Gaps = 40/151 (26%)

Query: 45  TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV-------TR 97
           TI    K+  V    KK  + I DT G   F          A G I+V D        TR
Sbjct: 53  TI----KIAAVSFETKKRLINIIDTPGHVDFTKEMIRGASQADGAILVVDAVEGVMPQTR 108

Query: 98  RDTFTNLSDVW--AKEIDLYSTNQDCIKLLVG-NKVDK----ESERVVTKKEGINFAREY 150
                        AK +         + ++V  NK+D+    E E VV ++       +Y
Sbjct: 109 E--------HLLLAKTLG--------VPIIVFINKIDRVDDAELEEVV-EEISRELLEKY 151

Query: 151 G-----CLFIECSAKTRVNVQQCFEELVLKI 176
           G        +  SA T   + +  E L L +
Sbjct: 152 GFGGETVPVVPGSALTGEGIDELLEALDLYL 182

This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 34/145 (23%), Positives = 55/145 (37%), Gaps = 44/145 (30%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSP--------TIGVDF-KVKYVDVGGKKLKLAI 66
           K+L++G  G GKSS+     S  F   SP        TI V+   V+++      L L +
Sbjct: 1   KVLLMGLRGSGKSSM----RSIIFSNYSPRDTLRLGATIDVEQSHVRFLG----NLTLNL 52

Query: 67  WDTAGQERFRTLTSSY-----YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           WD  GQ+ F     +      +     +I V+DV  R+        + +++         
Sbjct: 53  WDCPGQDDFMENYLTRQKEHIFSNVGVLIYVFDVESRE--------YEEDLATL---VKI 101

Query: 122 IKLLVGN-----------KVDKESE 135
           I+ L              K+D  SE
Sbjct: 102 IEALYQYSPNAKVFVLIHKMDLLSE 126

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.98
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.98
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.98
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.98
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.98
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.98
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.98
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.97
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.97
KOG0395	196	consensus Ras-related GTPase [General function pre	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.96
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.96
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.96
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.95
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.95
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.95
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
PTZ00099	176	rab6; Provisional	99.95
PLN00023	334	GTP-binding protein; Provisional	99.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.94
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.93
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.93
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.93
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.93
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.93
PRK12299	335	obgE GTPase CgtA; Reviewed	99.93
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.93
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.93
PRK15494	339	era GTPase Era; Provisional	99.93
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.92
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.92
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.92
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.92
PRK04213	201	GTP-binding protein; Provisional	99.91
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.91
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.91
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.91
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.91
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.9
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.9
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.9
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.9
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.9
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.9
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.9
PRK03003	472	GTP-binding protein Der; Reviewed	99.9
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.89
PRK00089	292	era GTPase Era; Reviewed	99.89
KOG1673	205	consensus Ras GTPases [General function prediction	99.89
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.89
PRK03003	472	GTP-binding protein Der; Reviewed	99.89
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.89
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.89
PRK12297	424	obgE GTPase CgtA; Reviewed	99.88
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.88
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.88
COG1159	298	Era GTPase [General function prediction only]	99.88
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.88
cd00881	189	GTP_translation_factor GTP translation factor fami	99.88
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.88
PRK12296	500	obgE GTPase CgtA; Reviewed	99.88
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.88
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.87
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.87
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.87
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.87
PRK12298	390	obgE GTPase CgtA; Reviewed	99.87
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.87
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.87
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.87
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.86
PRK11058	426	GTPase HflX; Provisional	99.86
PRK00093	435	GTP-binding protein Der; Reviewed	99.86
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.86
PRK00093	435	GTP-binding protein Der; Reviewed	99.85
CHL00189	742	infB translation initiation factor 2; Provisional	99.85
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.85
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.85
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.85
PRK05306	787	infB translation initiation factor IF-2; Validated	99.84
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.84
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.84
COG1160	444	Predicted GTPases [General function prediction onl	99.84
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.84
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.84
PRK05433	600	GTP-binding protein LepA; Provisional	99.84
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.83
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.83
PRK12317	425	elongation factor 1-alpha; Reviewed	99.82
COG0486	454	ThdF Predicted GTPase [General function prediction	99.82
COG1160	444	Predicted GTPases [General function prediction onl	99.82
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.82
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.81
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.81
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.81
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.8
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.8
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.79
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.79
PRK10218	607	GTP-binding protein; Provisional	99.79
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.79
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.79
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.78
COG2229	187	Predicted GTPase [General function prediction only	99.78
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.78
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.77
COG0218	200	Predicted GTPase [General function prediction only	99.77
PRK04004	586	translation initiation factor IF-2; Validated	99.77
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.77
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.76
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.76
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.76
PRK12736	394	elongation factor Tu; Reviewed	99.76
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.75
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.75
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.74
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.74
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.74
PRK12735	396	elongation factor Tu; Reviewed	99.74
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.72
CHL00071	409	tufA elongation factor Tu	99.72
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.71
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.7
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.7
COG2262	411	HflX GTPases [General function prediction only]	99.69
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.69
COG1084	346	Predicted GTPase [General function prediction only	99.68
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.68
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.67
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.67
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.67
PRK00049	396	elongation factor Tu; Reviewed	99.67
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.67
PLN03126	478	Elongation factor Tu; Provisional	99.67
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.67
COG1163	365	DRG Predicted GTPase [General function prediction	99.67
PLN03127	447	Elongation factor Tu; Provisional	99.66
PLN00043	447	elongation factor 1-alpha; Provisional	99.66
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.65
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.65
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.64
PRK13351	687	elongation factor G; Reviewed	99.64
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.64
PTZ00141	446	elongation factor 1- alpha; Provisional	99.64
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.64
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.63
COG0536	369	Obg Predicted GTPase [General function prediction	99.62
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.61
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.6
KOG1145	683	consensus Mitochondrial translation initiation fac	99.59
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.59
PRK12739	691	elongation factor G; Reviewed	99.58
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.57
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.56
KOG0090	238	consensus Signal recognition particle receptor, be	99.55
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.55
PRK09602	396	translation-associated GTPase; Reviewed	99.55
PRK09866	741	hypothetical protein; Provisional	99.55
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.55
COG3596	296	Predicted GTPase [General function prediction only	99.54
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.54
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.53
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.5
PRK12740	668	elongation factor G; Reviewed	99.49
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.49
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.49
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.49
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.48
PRK00007	693	elongation factor G; Reviewed	99.48
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.44
PRK13768	253	GTPase; Provisional	99.44
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.44
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.42
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.42
PRK14845	1049	translation initiation factor IF-2; Provisional	99.41
PTZ00258	390	GTP-binding protein; Provisional	99.4
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.4
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.39
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.38
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.38
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.37
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.37
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.34
PTZ00416	836	elongation factor 2; Provisional	99.33
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.32
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.32
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.3
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.3
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.29
PRK09601	364	GTP-binding protein YchF; Reviewed	99.28
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.28
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.28
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.26
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.26
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.24
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.23
PRK07560	731	elongation factor EF-2; Reviewed	99.22
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.21
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.2
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.2
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.19
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.18
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.16
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.15
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.14
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.12
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.11
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.11
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.1
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.08
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.08
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.06
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.05
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.04
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.02
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.01
KOG0410	410	consensus Predicted GTP binding protein [General f	99.0
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.99
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.99
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.99
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.98
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.96
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.96
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.95
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.94
PRK00098	298	GTPase RsgA; Reviewed	98.94
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.94
PRK12289	352	GTPase RsgA; Reviewed	98.88
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.85
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.83
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.82
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.82
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.81
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.81
PRK12288	347	GTPase RsgA; Reviewed	98.8
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.8
COG1161	322	Predicted GTPases [General function prediction onl	98.79
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.72
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.71
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.68
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.67
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.67
KOG2486	320	consensus Predicted GTPase [General function predi	98.6
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.59
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.56
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.56
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.55
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.55
PRK12289	352	GTPase RsgA; Reviewed	98.54
PRK12288	347	GTPase RsgA; Reviewed	98.54
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.54
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.52
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.49
KOG1143	591	consensus Predicted translation elongation factor	98.49
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.47
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.45
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.44
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.44
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.41
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.41
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.41
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.39
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.39
PRK13796	365	GTPase YqeH; Provisional	98.39
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.38
KOG0460	449	consensus Mitochondrial translation elongation fac	98.38
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.38
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.38
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.38
PRK10416	318	signal recognition particle-docking protein FtsY;	98.37
cd03112	158	CobW_like The function of this protein family is u	98.31
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.3
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.29
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.28
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.28
PRK14974	336	cell division protein FtsY; Provisional	98.25
PRK00098	298	GTPase RsgA; Reviewed	98.24
PRK01889	356	GTPase RsgA; Reviewed	98.24
PRK13796	365	GTPase YqeH; Provisional	98.23
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.22
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.21
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.18
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.17
KOG2484	435	consensus GTPase [General function prediction only	98.15
COG1162	301	Predicted GTPases [General function prediction onl	98.13
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.11
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.1
PRK13695	174	putative NTPase; Provisional	98.04
KOG0465	721	consensus Mitochondrial elongation factor [Transla	97.97
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.97
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.96
COG1162	301	Predicted GTPases [General function prediction onl	97.95
COG0523	323	Putative GTPases (G3E family) [General function pr	97.91
cd03114	148	ArgK-like The function of this protein family is u	97.89
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.88
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.85
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.8
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.79
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.79
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.75
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.72
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.72
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.7
TIGR00959	428	ffh signal recognition particle protein. This mode	97.68
PRK10867	433	signal recognition particle protein; Provisional	97.64
COG3523	1188	IcmF Type VI protein secretion system component Va	97.64
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.61
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.6
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.59
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.59
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.59
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.57
PRK08118	167	topology modulation protein; Reviewed	97.54
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.53
PRK14737	186	gmk guanylate kinase; Provisional	97.53
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.53
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.49
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.48
PRK07261	171	topology modulation protein; Provisional	97.46
PRK14738	206	gmk guanylate kinase; Provisional	97.45
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.45
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.45
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.43
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.43
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.4
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.38
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.37
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.36
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.35
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.34
PRK04195	482	replication factor C large subunit; Provisional	97.33
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.33
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.31
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.3
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.3
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.3
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.27
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.27
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.24
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.23
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.22
PF00004	132	AAA: ATPase family associated with various cellula	97.17
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.17
PRK06217	183	hypothetical protein; Validated	97.16
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.15
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.15
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.13
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.13
PRK03839	180	putative kinase; Provisional	97.12
PRK01889	356	GTPase RsgA; Reviewed	97.12
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.11
cd03111	106	CpaE_like This protein family consists of proteins	97.11
smart00382	148	AAA ATPases associated with a variety of cellular	97.11
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.09
PRK14530	215	adenylate kinase; Provisional	97.09
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.08
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.07
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.07
PRK13949	169	shikimate kinase; Provisional	97.05
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.05
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.02
PRK05480	209	uridine/cytidine kinase; Provisional	97.02
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.02
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.02
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.01
cd03110	179	Fer4_NifH_child This protein family's function is	97.0
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.99
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.99
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.99
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.99
KOG3929	363	consensus Uncharacterized conserved protein [Funct	96.98
KOG0780	483	consensus Signal recognition particle, subunit Srp	96.98
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.97
cd02036	179	MinD Bacterial cell division requires the formatio	96.97
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.95
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.95
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.95
COG3638	258	ABC-type phosphate/phosphonate transport system, A	96.94
PRK08233	182	hypothetical protein; Provisional	96.94
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.93
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.93
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	96.93
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.93
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	96.92
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.92
PRK14532	188	adenylate kinase; Provisional	96.92
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.92
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.92
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.92
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.91
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.91
COG2884	223	FtsE Predicted ATPase involved in cell division [C	96.91

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-42  Score=241.81  Aligned_cols=199  Identities=49%  Similarity=0.843  Sum_probs=178.0

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      ...++.|||+++|++|||||+|+.||+.+.|.+.+. |.|.++....+.+++..+.+++|||+|++.+++....++++++
T Consensus         4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah   83 (205)
T KOG0084|consen    4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH   83 (205)
T ss_pred             cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence            345789999999999999999999999999998777 9999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc-EEEEccCCCCCHH
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQ  166 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~  166 (210)
                      ++|+|||+++.+||..+.. |+..++++. ..++|.++||||+|+.+.+.+..++++.++..++++ ++++||+++.+++
T Consensus        84 Gii~vyDiT~~~SF~~v~~-Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe  161 (205)
T KOG0084|consen   84 GIIFVYDITKQESFNNVKR-WIQEIDRYA-SENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVE  161 (205)
T ss_pred             eEEEEEEcccHHHhhhHHH-HHHHhhhhc-cCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence            9999999999999999999 999999876 446899999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHHHHcCCCcccccccCcccccccCCCCccCccCCCCC
Q 028329          167 QCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC  210 (210)
Q Consensus       167 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
                      +.|..|...+.++......... ...+..+.+..+..+..++||
T Consensus       162 ~~F~~la~~lk~~~~~~~~~~~-~~~~~~ql~~~p~~~~~~~~C  204 (205)
T KOG0084|consen  162 DAFLTLAKELKQRKGLHVKWST-ASLESVQLKGTPVKKSNGGCC  204 (205)
T ss_pred             HHHHHHHHHHHHhcccCCCCCc-CCCCceeeCCCCcccccCCCC
Confidence            9999999999998888777664 222223333345556666688

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=7.2e-41  Score=226.13  Aligned_cols=201  Identities=68%  Similarity=1.083  Sum_probs=184.4

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      ......+||+++|++|+|||||+.++..+.|.+..+ +.|.++.+..+.+++..+++.+|||+|++.++.+...+++++.
T Consensus         6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq   85 (209)
T KOG0080|consen    6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ   85 (209)
T ss_pred             cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence            445678999999999999999999999999988888 7999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  167 (210)
                      ++|+|||++.+++|..+.. |...+..|..++++..++|+||+|.+..+.++.++...+++++++-|+++||++..++..
T Consensus        86 GiIlVYDVT~Rdtf~kLd~-W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~  164 (209)
T KOG0080|consen   86 GIILVYDVTSRDTFVKLDI-WLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQC  164 (209)
T ss_pred             eeEEEEEccchhhHHhHHH-HHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHH
Confidence            9999999999999999966 999999999999999999999999988899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCcccccccCcccccccCCCCccCccCCCCC
Q 028329          168 CFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC  210 (210)
Q Consensus       168 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
                      .|+.+...+++.+.+.+......+.++......+.....++||
T Consensus       165 ~FeelveKIi~tp~l~~~~n~~~~~~i~~~p~~~~~~~~g~~C  207 (209)
T KOG0080|consen  165 CFEELVEKIIETPSLWEEGNSSAGLDIASDPDGEASAHQGGCC  207 (209)
T ss_pred             HHHHHHHHHhcCcchhhccCCccccccccCCCcccccccCCcc
Confidence            9999999999999999988888888777633333333445577

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.6e-40  Score=229.72  Aligned_cols=196  Identities=40%  Similarity=0.662  Sum_probs=170.7

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...+||+++|+.+||||||+.|+..++|.+. .+|+|.-+....+.++...+++.+|||+|++.|.++.+.++++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            4679999999999999999999999999886 459999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      +|||+++.+||..++. |...+.+... +++.+.+||||+|+...+.+..+++..++.+.+..++++||+++.|++++|.
T Consensus        83 vvYDit~~~SF~~aK~-WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~  160 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKN-WVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQ  160 (200)
T ss_pred             EEEecccHHHHHHHHH-HHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHH
Confidence            9999999999999999 9999988665 7788889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCcccccccCcccccccCCCCccCccCCCCC
Q 028329          171 ELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC  210 (210)
Q Consensus       171 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
                      .|.+.+...+...................+ ++....+||
T Consensus       161 ~Ia~~lp~~~~~~~~~~~~~~~g~~l~~~~-~~~~~~~~C  199 (200)
T KOG0092|consen  161 AIAEKLPCSDPQERQGLPNRRQGVDLNSNQ-EPARPSGCC  199 (200)
T ss_pred             HHHHhccCccccccccccccccceecccCC-CCcCcCCcC
Confidence            999999888877655322222222222222 455666776

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-38  Score=221.40  Aligned_cols=170  Identities=39%  Similarity=0.628  Sum_probs=159.2

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      .-+.+||+++|+.+|||||||+|++.+.|...|. |+|.++....+.+.+.++.+++|||+|++.++++.+.+++++.++
T Consensus        19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va   98 (221)
T KOG0094|consen   19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   98 (221)
T ss_pred             cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence            3456999999999999999999999999988777 999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  169 (210)
                      |+|||+++..||++... |++.+.......++.+++||||.||.+++.+..+++...++++++.|+++||+.|+||..+|
T Consensus        99 viVyDit~~~Sfe~t~k-Wi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lF  177 (221)
T KOG0094|consen   99 VIVYDITDRNSFENTSK-WIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLF  177 (221)
T ss_pred             EEEEeccccchHHHHHH-HHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHH
Confidence            99999999999999999 99988876555568999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCC
Q 028329          170 EELVLKILDTPS  181 (210)
Q Consensus       170 ~~l~~~~~~~~~  181 (210)
                      ..|..++.+...
T Consensus       178 rrIaa~l~~~~~  189 (221)
T KOG0094|consen  178 RRIAAALPGMEV  189 (221)
T ss_pred             HHHHHhccCccc
Confidence            999888877755

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=3.6e-38  Score=232.49  Aligned_cols=195  Identities=34%  Similarity=0.585  Sum_probs=172.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      +||+++|++|||||||+++|.++.+...+ ++.+.++....+.++ +..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            58999999999999999999998876554 477777777777777 7889999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhc---cCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEEEEccCCCCCHHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYS---TNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQC  168 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~  168 (210)
                      ||++++++|+.+.. |...+....   ...++|++||+||+|+...+.+..+++..++...+ ..++++||+++.|++++
T Consensus        81 ~D~t~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~  159 (201)
T cd04107          81 FDVTRPSTFEAVLK-WKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA  159 (201)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence            99999999999987 777776432   23678999999999997667778888899999988 58999999999999999


Q ss_pred             HHHHHHHHHcCCCcccccccCcccccccCCCCccCccCCCCC
Q 028329          169 FEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC  210 (210)
Q Consensus       169 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
                      |.+|.+.+.+............+.+....++..+.++.+|||
T Consensus       160 f~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (201)
T cd04107         160 MRFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGCC  201 (201)
T ss_pred             HHHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCCC
Confidence            999999999999888888888888888888888888999999

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.3e-38  Score=222.05  Aligned_cols=173  Identities=53%  Similarity=0.930  Sum_probs=162.9

Q ss_pred             ccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028329            8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA   86 (210)
Q Consensus         8 ~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (210)
                      .++.++.+||+++|+++||||+|+.++..+.+...+. +.|.++....+.+++..+.+++|||+|++.++.....+++.|
T Consensus         6 ~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA   85 (207)
T KOG0078|consen    6 KEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGA   85 (207)
T ss_pred             cCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhc
Confidence            3477899999999999999999999999999877766 999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  166 (210)
                      +++++|||+++..||+++.. |+..++.+... ++|.++||||+|+...+.+..+.++.++.++|+.|+|+||++|.||+
T Consensus        86 ~gi~LvyDitne~Sfeni~~-W~~~I~e~a~~-~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~  163 (207)
T KOG0078|consen   86 MGILLVYDITNEKSFENIRN-WIKNIDEHASD-DVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIE  163 (207)
T ss_pred             CeeEEEEEccchHHHHHHHH-HHHHHHhhCCC-CCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHH
Confidence            99999999999999999999 99999987644 89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCc
Q 028329          167 QCFEELVLKILDTPSL  182 (210)
Q Consensus       167 ~~~~~l~~~~~~~~~~  182 (210)
                      +.|-.|.+.+.++...
T Consensus       164 eaF~~La~~i~~k~~~  179 (207)
T KOG0078|consen  164 EAFLSLARDILQKLED  179 (207)
T ss_pred             HHHHHHHHHHHhhcch
Confidence            9999999999875444

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=6.1e-37  Score=227.52  Aligned_cols=210  Identities=70%  Similarity=1.161  Sum_probs=185.5

Q ss_pred             CCCCcccccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchh
Q 028329            1 MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS   80 (210)
Q Consensus         1 ~~s~~~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~   80 (210)
                      |.+.+....+....+||+++|++|||||||+++|.++.+....++.+.++....+.+++..+.+.+||+||++.+...+.
T Consensus         1 ~~~~~~~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~   80 (211)
T PLN03118          1 MGSSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTS   80 (211)
T ss_pred             CCcccccccccCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHH
Confidence            45556666677788999999999999999999999988877667888878777788888889999999999999999999


Q ss_pred             hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccC
Q 028329           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK  160 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  160 (210)
                      .+++.+|++++|||+++.++|+.+...|...+..+....+.|+++|+||+|+...+.+..++...++...++.++++||+
T Consensus        81 ~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk  160 (211)
T PLN03118         81 SYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAK  160 (211)
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCC
Confidence            99999999999999999999999988787777765555678999999999998777777778888888889999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCCcccccccCcccccccCCCCccCccCCCCC
Q 028329          161 TRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC  210 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
                      ++.|++++|.+|...+.+....++++....+++..++....++..+.+||
T Consensus       161 ~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (211)
T PLN03118        161 TRENVEQCFEELALKIMEVPSLLEEGSTAVKRNILKQKPEHQPPPNGGCC  210 (211)
T ss_pred             CCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccccccCCCCcCCCC
Confidence            99999999999999999999989888888889999988888888888887

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=9.2e-37  Score=223.92  Aligned_cols=193  Identities=44%  Similarity=0.765  Sum_probs=158.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +.|+++|++|||||||++++..+.|...+. +.+.++....+.+++..+.+.+||++|++.++.++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            368999999999999999999999876554 7788888888888999999999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCcEEEEccCCCCCHHHHHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~l  172 (210)
                      |++++++|+.+.. |+..+.... ..++|++||+||+|+...+.+..+++..++... ++.+++|||++|.|++++|.++
T Consensus        81 Dvtd~~Sf~~l~~-w~~~i~~~~-~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l  158 (202)
T cd04120          81 DITKKETFDDLPK-WMKMIDKYA-SEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL  158 (202)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHH
Confidence            9999999999987 888876643 457999999999999877888888888888775 7889999999999999999999


Q ss_pred             HHHHHcCCCcccccccCcccccccCC-------CCccCccCCCCC
Q 028329          173 VLKILDTPSLLAEGSKGLKKNIFKQK-------PPEADAAASGCC  210 (210)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~  210 (210)
                      ++.+.+............. +++.-+       ..+.+..+..||
T Consensus       159 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  202 (202)
T cd04120         159 VDDILKKMPLDILRNELSN-SILSLQPEPEIPPELPPPRPHVRCC  202 (202)
T ss_pred             HHHHHHhCccccccccccc-hhhccCCCCCCCcCCCCCCCCcccC
Confidence            9999775433222222222 111111       123466788888

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=7.8e-36  Score=217.09  Aligned_cols=167  Identities=39%  Similarity=0.678  Sum_probs=150.0

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      .+..+||+++|+.|||||||+++|..+.+...+ ++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            456799999999999999999999998886555 4777777777788899999999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  169 (210)
                      |+|||++++.+|+.+.. |+..+....  +++|++|||||.|+...+.+..++++.++...++++++|||++|.|++++|
T Consensus        83 llVfD~t~~~Sf~~~~~-w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F  159 (189)
T cd04121          83 ILVYDITNRWSFDGIDR-WIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESF  159 (189)
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence            99999999999999987 888887643  579999999999998777888889999999999999999999999999999


Q ss_pred             HHHHHHHHcCC
Q 028329          170 EELVLKILDTP  180 (210)
Q Consensus       170 ~~l~~~~~~~~  180 (210)
                      .++.+.+..+.
T Consensus       160 ~~l~~~i~~~~  170 (189)
T cd04121         160 TELARIVLMRH  170 (189)
T ss_pred             HHHHHHHHHhc
Confidence            99999886543

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=1.7e-36  Score=209.52  Aligned_cols=171  Identities=38%  Similarity=0.671  Sum_probs=156.9

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ....+||+++|++|+|||||++++...+|...+. +++.++-...+.+++..+-+++|||+|++.++++-..+++++|+.
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC   85 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC   85 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence            3567999999999999999999999999987776 999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCC---CCcEEEEEeCCCCCCC--ceecHHHHHHHHHHhC-CcEEEEccCCCC
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ---DCIKLLVGNKVDKESE--RVVTKKEGINFAREYG-CLFIECSAKTRV  163 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~---~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~sa~~~~  163 (210)
                      ++|||.+++.||+.+.. |...+..+....   .-|+||+|||+|++..  +.++...+..|+...| ++||++|||...
T Consensus        86 vlvydv~~~~Sfe~L~~-Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~  164 (210)
T KOG0394|consen   86 VLVYDVNNPKSFENLEN-WRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT  164 (210)
T ss_pred             EEEeecCChhhhccHHH-HHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence            99999999999999999 888887665533   4699999999999653  7889999999999876 789999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCc
Q 028329          164 NVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~~~~  182 (210)
                      |+.+.|..+.+.++.....
T Consensus       165 NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  165 NVDEAFEEIARRALANEDR  183 (210)
T ss_pred             cHHHHHHHHHHHHHhccch
Confidence            9999999999999988865

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-36  Score=209.62  Aligned_cols=169  Identities=49%  Similarity=0.866  Sum_probs=158.1

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ....+|++++|+.|||||+|+.+++...|...++ |.|.++....+++++..+++++|||+|++.+++....+++.+.++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            3568999999999999999999999999988887 999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  169 (210)
                      ++|||+++.++|..+.. |+..++.+. ..+..+++++||+||...+.++.++++.|++.++..++++||+++.|++++|
T Consensus        83 lLVydit~r~sF~hL~~-wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF  160 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTS-WLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAF  160 (216)
T ss_pred             EEEEEccchhhHHHHHH-HHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHH
Confidence            99999999999999999 999988753 6788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCC
Q 028329          170 EELVLKILDTPS  181 (210)
Q Consensus       170 ~~l~~~~~~~~~  181 (210)
                      ......+++..+
T Consensus       161 ~nta~~Iy~~~q  172 (216)
T KOG0098|consen  161 INTAKEIYRKIQ  172 (216)
T ss_pred             HHHHHHHHHHHH
Confidence            998887765443

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.1e-36  Score=203.21  Aligned_cols=165  Identities=51%  Similarity=0.824  Sum_probs=155.5

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ..++.+|+|++|+|||+|+.++..+.|+..|. ++|.++.+..+.++|..+++.|||++|++.++.....+++..+++++
T Consensus         7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v   86 (198)
T KOG0079|consen    7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV   86 (198)
T ss_pred             HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence            45788999999999999999999999988887 99999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  171 (210)
                      |||.++.+||.++.. |++.++..  .+.+|-++||||.|.+..+.+..++++.|+...++.+|++|+++++|++.+|.-
T Consensus        87 VYDVTn~ESF~Nv~r-WLeei~~n--cdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c  163 (198)
T KOG0079|consen   87 VYDVTNGESFNNVKR-WLEEIRNN--CDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHC  163 (198)
T ss_pred             EEECcchhhhHhHHH-HHHHHHhc--CccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence            999999999999999 99999875  457899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCC
Q 028329          172 LVLKILDTP  180 (210)
Q Consensus       172 l~~~~~~~~  180 (210)
                      |.+++++..
T Consensus       164 it~qvl~~k  172 (198)
T KOG0079|consen  164 ITKQVLQAK  172 (198)
T ss_pred             HHHHHHHHH
Confidence            999887654

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=6.6e-35  Score=214.70  Aligned_cols=195  Identities=45%  Similarity=0.763  Sum_probs=162.3

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      +..+||+++|++|||||||+++|.++.+...+ ++.+.++....+..++..+.+.+||+||++.+...+..+++++|+++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            35799999999999999999999998876544 47777777777788888899999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      +|||++++++|+.+.. |+..+...  ....|++||+||+|+.....+..+++..++...+++++++||+++.|++++|+
T Consensus        84 lv~D~~~~~s~~~~~~-~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~  160 (199)
T cd04110          84 VVYDVTNGESFVNVKR-WLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFN  160 (199)
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHH
Confidence            9999999999999987 87777653  35689999999999987777777888888888899999999999999999999


Q ss_pred             HHHHHHHcCCCcccccccCcccccccCCCCccCccCCCCC
Q 028329          171 ELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC  210 (210)
Q Consensus       171 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
                      +|...+.+....................+++. ++++.||
T Consensus       161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  199 (199)
T cd04110         161 CITELVLRAKKDNLAKQQQQQQNDVVKLPKNS-KRKKRCC  199 (199)
T ss_pred             HHHHHHHHhhhccCcccccCCccccCccchhc-cccccCC
Confidence            99999987766655555555555555555443 4455666

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=2.1e-35  Score=215.71  Aligned_cols=182  Identities=34%  Similarity=0.522  Sum_probs=152.0

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||++++..+.+...+. +.+.++ ...+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv   83 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV   83 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence            4899999999999999999999988765554 555444 45577888889999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  172 (210)
                      ||++++++|+.+.. |...+.......++|+++|+||.|++..+.+...++..++..++++++++||+++.|++++|.+|
T Consensus        84 ~D~s~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l  162 (189)
T PTZ00369         84 YSITSRSSFEEIAS-FREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL  162 (189)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            99999999999988 77777665555689999999999997767677777888888888999999999999999999999


Q ss_pred             HHHHHcCCCcccccccCcccccccCCCCccCccCCCCC
Q 028329          173 VLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC  210 (210)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
                      ++.+.+..+..             .+++.+++++++||
T Consensus       163 ~~~l~~~~~~~-------------~~~~~~~~~~~~~~  187 (189)
T PTZ00369        163 VREIRKYLKED-------------MPSQKQKKKGGLCL  187 (189)
T ss_pred             HHHHHHHhhcc-------------chhhhhhccCCeee
Confidence            99886543211             34445566777887

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=5.4e-35  Score=213.90  Aligned_cols=189  Identities=41%  Similarity=0.771  Sum_probs=156.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCC--CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEE--LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      +||+++|++|||||||+++|..+.+..  ..++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999888753  334666666666678888899999999999999998888999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  172 (210)
                      ||+++.++++++.. |+..+.... ..++|+++|+||.|+...+.+..+++..++...+++++++||++|.|++++|.+|
T Consensus        81 ~D~~~~~s~~~~~~-~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l  158 (191)
T cd04112          81 YDITNKASFDNIRA-WLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAV  158 (191)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999988 888777643 3478999999999997666677778888888889999999999999999999999


Q ss_pred             HHHHHcCCCcccccccCcccccccCCCCccCccCCCCC
Q 028329          173 VLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC  210 (210)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
                      .+.+.+.... ...+...+.+..+++.    +++++||
T Consensus       159 ~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~  191 (191)
T cd04112         159 AKELKHRKYE-QPDEGKFKISDYVTKQ----KKISRCC  191 (191)
T ss_pred             HHHHHHhccc-cCCCCcEEeccccCcc----cccCCCC
Confidence            9999888644 3333333344444443    4788998

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=2.7e-35  Score=215.34  Aligned_cols=185  Identities=35%  Similarity=0.530  Sum_probs=148.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      ||+++|++|||||||+++|+.+.+...++ +.+.. ......+++..+.+.+||++|++.+...+..+++.+|++++|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDS-YRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhh-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            68999999999999999999888866554 44433 34456678888999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329           95 VTRRDTFTNLSDVWAKEIDLYST--NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  172 (210)
                      +++.++|+.+.. |+..+.....  ..++|+++|+||+|+...+.+...++..++...+++++++||+++.|++++|.++
T Consensus        80 ~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l  158 (190)
T cd04144          80 ITSRSTFERVER-FREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTL  158 (190)
T ss_pred             CCCHHHHHHHHH-HHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence            999999999988 7776655432  2578999999999997777777777888888889999999999999999999999


Q ss_pred             HHHHHcCCCcccccccCcccccccCCCCccCccCCCCC
Q 028329          173 VLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC  210 (210)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
                      ++.+.++...-        .+....+...++|+++.||
T Consensus       159 ~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~  188 (190)
T cd04144         159 VRALRQQRQGG--------QGPKGGPTKKKEKKKRKCV  188 (190)
T ss_pred             HHHHHHhhccc--------CCCcCCCCCcccccccCce
Confidence            99887555442        1223344444445555554

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=3.8e-35  Score=217.67  Aligned_cols=187  Identities=33%  Similarity=0.542  Sum_probs=149.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|.+|||||||+++|..+.+....++.+..+....+    ..+.+.+||++|++.+..++..+++.+|++|+|||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D   76 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD   76 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence            58999999999999999999999987666677666544433    46789999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC-------------------CceecHHHHHHHHHHhC----
Q 028329           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES-------------------ERVVTKKEGINFAREYG----  151 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~----  151 (210)
                      ++++++|..+..+|......  ...++|++||+||+|+..                   .+.+..+++..++.+.+    
T Consensus        77 vt~~~Sf~~l~~~~~~l~~~--~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~  154 (220)
T cd04126          77 VSNVQSLEELEDRFLGLTDT--ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKM  154 (220)
T ss_pred             CCCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccc
Confidence            99999999998855554432  245689999999999965                   56778889999998876    


Q ss_pred             ----------CcEEEEccCCCCCHHHHHHHHHHHHHcCCCcccccccCcccccccCCCCccCccCCCCC
Q 028329          152 ----------CLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC  210 (210)
Q Consensus       152 ----------~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
                                ++|++|||++|.||+++|.++++.++...........   ........++.+++|.+||
T Consensus       155 ~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  220 (220)
T cd04126         155 LDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEAN---RTQGTVNLPNPKRSKSKCC  220 (220)
T ss_pred             ccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhh---hhhccccCCCcccCCCCCC
Confidence                      6799999999999999999999988754333322111   1122334445678899999

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=2e-34  Score=214.53  Aligned_cols=167  Identities=44%  Similarity=0.799  Sum_probs=148.8

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      .++.+||+++|++|||||||+++|.++.+... .++.+.++....+.+++..+.+.+||++|++.+...+..+++.++++
T Consensus         9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~   88 (216)
T PLN03110          9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   88 (216)
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence            45779999999999999999999999887644 45888888888888889999999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  169 (210)
                      ++|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus        89 ilv~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf  166 (216)
T PLN03110         89 LLVYDITKRQTFDNVQR-WLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAF  166 (216)
T ss_pred             EEEEECCChHHHHHHHH-HHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999887 888777643 3579999999999998777777788888888889999999999999999999


Q ss_pred             HHHHHHHHcC
Q 028329          170 EELVLKILDT  179 (210)
Q Consensus       170 ~~l~~~~~~~  179 (210)
                      ++++..+.+.
T Consensus       167 ~~l~~~i~~~  176 (216)
T PLN03110        167 QTILLEIYHI  176 (216)
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=7.6e-35  Score=209.64  Aligned_cols=166  Identities=38%  Similarity=0.598  Sum_probs=145.3

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||++++..+.+...+. +.+..+ ...+.+++..+.+.+||++|+..+..++..++..+|++++|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            4799999999999999999999998875544 555333 44567788899999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  172 (210)
                      ||++++.+|+.+.. |...+.......++|+++|+||+|+...+.+..+++..++...++++++|||+++.|++++|+++
T Consensus        81 ~d~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l  159 (172)
T cd04141          81 YSVTDRHSFQEASE-FKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL  159 (172)
T ss_pred             EECCchhHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence            99999999999987 77777765455679999999999998777788888899999999999999999999999999999


Q ss_pred             HHHHHcCCC
Q 028329          173 VLKILDTPS  181 (210)
Q Consensus       173 ~~~~~~~~~  181 (210)
                      ++.+.+..+
T Consensus       160 ~~~~~~~~~  168 (172)
T cd04141         160 VREIRRKES  168 (172)
T ss_pred             HHHHHHhcc
Confidence            998876543

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.8e-35  Score=196.27  Aligned_cols=175  Identities=49%  Similarity=0.838  Sum_probs=161.1

Q ss_pred             cccccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcc
Q 028329            5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYY   83 (210)
Q Consensus         5 ~~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~   83 (210)
                      .+..+..++.+|++++|++.+|||||+.++++..|..... +.|..+....+......+.+++|||+|++.++.+.-.++
T Consensus        12 ~s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayy   91 (193)
T KOG0093|consen   12 DSIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYY   91 (193)
T ss_pred             ccccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHh
Confidence            4455677899999999999999999999999998865444 999999999888888999999999999999999999999


Q ss_pred             cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCC
Q 028329           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV  163 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  163 (210)
                      ++++++|++||+++.+||..+.. |...++.+. -.+.|+|+++||+|++.++.+..+.++.++..+|+.||++||+.+.
T Consensus        92 RgamgfiLmyDitNeeSf~svqd-w~tqIktys-w~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~Ni  169 (193)
T KOG0093|consen   92 RGAMGFILMYDITNEESFNSVQD-WITQIKTYS-WDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENI  169 (193)
T ss_pred             hccceEEEEEecCCHHHHHHHHH-HHHHheeee-ccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccc
Confidence            99999999999999999999999 999999874 5579999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCC
Q 028329          164 NVQQCFEELVLKILDTPS  181 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~~~  181 (210)
                      |++.+|..+...+-+..+
T Consensus       170 nVk~~Fe~lv~~Ic~kms  187 (193)
T KOG0093|consen  170 NVKQVFERLVDIICDKMS  187 (193)
T ss_pred             cHHHHHHHHHHHHHHHhh
Confidence            999999999998866543

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=2.9e-34  Score=207.86  Aligned_cols=163  Identities=28%  Similarity=0.545  Sum_probs=142.3

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...+||+++|+++||||||++++..+.+...+. +.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|+++
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            456899999999999999999999999876554 665444 456788999999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-cEEEE
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYGC-LFIEC  157 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~  157 (210)
                      +|||++++.||+.+...|...+....  ++.|++|||||.|+..            .+.+..+++..+++..++ +|++|
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~  159 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  159 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence            99999999999998555998887753  5689999999999853            346888999999999996 89999


Q ss_pred             ccCCCCC-HHHHHHHHHHHHH
Q 028329          158 SAKTRVN-VQQCFEELVLKIL  177 (210)
Q Consensus       158 sa~~~~~-i~~~~~~l~~~~~  177 (210)
                      ||+++.| ++++|..+++.++
T Consensus       160 SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         160 SALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CcCCCCCCHHHHHHHHHHHHh
Confidence            9999998 9999999998654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=3.5e-34  Score=205.17  Aligned_cols=163  Identities=53%  Similarity=0.877  Sum_probs=145.4

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||+++|..+.+...++ +.+.++....+.+++..+.+.+||+||+..+...+..+++++|++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            4899999999999999999999998876655 777777777778888899999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  172 (210)
                      ||++++++|+.+.. |+..+... ...+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|.++
T Consensus        82 ~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l  159 (166)
T cd04122          82 YDITRRSTYNHLSS-WLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLET  159 (166)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            99999999999988 77776553 34568999999999998877788888899999889999999999999999999999


Q ss_pred             HHHHHc
Q 028329          173 VLKILD  178 (210)
Q Consensus       173 ~~~~~~  178 (210)
                      .+.+.+
T Consensus       160 ~~~~~~  165 (166)
T cd04122         160 AKKIYQ  165 (166)
T ss_pred             HHHHhh
Confidence            988865

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-34  Score=204.50  Aligned_cols=176  Identities=47%  Similarity=0.793  Sum_probs=162.1

Q ss_pred             cccccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcc
Q 028329            5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYY   83 (210)
Q Consensus         5 ~~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~   83 (210)
                      ......-++.|||+++|++++|||-|+.|+..+.|..... |.|.++....+.++++.+..+||||+|++.|++....++
T Consensus         5 ~~~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYY   84 (222)
T KOG0087|consen    5 RDKSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYY   84 (222)
T ss_pred             cCCccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhh
Confidence            3445677899999999999999999999999999976665 999999999999999999999999999999999999999


Q ss_pred             cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCC
Q 028329           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV  163 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  163 (210)
                      +++.++++|||++...+|+++.. |+..++.+. ..++++++||||+||...+.+..++++.++...+..++++||..+.
T Consensus        85 rgAvGAllVYDITr~~Tfenv~r-WL~ELRdha-d~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~t  162 (222)
T KOG0087|consen   85 RGAVGALLVYDITRRQTFENVER-WLKELRDHA-DSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDAT  162 (222)
T ss_pred             cccceeEEEEechhHHHHHHHHH-HHHHHHhcC-CCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccc
Confidence            99999999999999999998888 999998865 4589999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCc
Q 028329          164 NVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~~~~  182 (210)
                      |++..|..++..+.+.-+.
T Consensus       163 NVe~aF~~~l~~I~~~vs~  181 (222)
T KOG0087|consen  163 NVEKAFERVLTEIYKIVSK  181 (222)
T ss_pred             cHHHHHHHHHHHHHHHHHH
Confidence            9999999999888665443

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=5.5e-34  Score=212.18  Aligned_cols=165  Identities=35%  Similarity=0.550  Sum_probs=144.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECC-eEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGG-KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      +||+++|++|||||||+++|.++.+...+. +.+.++....+.+++ ..+.+.+||++|+..+..++..+++.+|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            589999999999999999999988866554 777787777777754 578999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccC--CCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTN--QDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      ||++++++|+.+.. |...+......  .++|+++|+||.|+...+.+..++...++...+++++++||++|.|++++|+
T Consensus        81 ~D~t~~~s~~~~~~-w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~  159 (215)
T cd04109          81 YDVTNSQSFENLED-WYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQ  159 (215)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            99999999999987 88888765432  4578999999999987777788888899998999999999999999999999


Q ss_pred             HHHHHHHcCC
Q 028329          171 ELVLKILDTP  180 (210)
Q Consensus       171 ~l~~~~~~~~  180 (210)
                      ++.+.+.+..
T Consensus       160 ~l~~~l~~~~  169 (215)
T cd04109         160 QLAAELLGVD  169 (215)
T ss_pred             HHHHHHHhcc
Confidence            9999998753

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=5.4e-34  Score=205.28  Aligned_cols=161  Identities=32%  Similarity=0.650  Sum_probs=140.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++++|||||+.++..+.|...+ ++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            79999999999999999999999997654 4666554 455778899999999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc----------eecHHHHHHHHHHhCC-cEEEEccCCC
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER----------VVTKKEGINFAREYGC-LFIECSAKTR  162 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~sa~~~  162 (210)
                      |+++++||+.+...|+..+....  .++|++|||||+|+.+.+          .+..+++..++...++ .+++|||+++
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~  158 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQ  158 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcc
Confidence            99999999998544888887643  479999999999996543          4778889999999998 5999999999


Q ss_pred             CCHHHHHHHHHHHHHc
Q 028329          163 VNVQQCFEELVLKILD  178 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~~  178 (210)
                      .||+++|..+++.+.+
T Consensus       159 ~nV~~~F~~~~~~~~~  174 (176)
T cd04133         159 QNVKAVFDAAIKVVLQ  174 (176)
T ss_pred             cCHHHHHHHHHHHHhc
Confidence            9999999999997743

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=8.2e-34  Score=207.23  Aligned_cols=164  Identities=49%  Similarity=0.794  Sum_probs=145.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+++|.++.+.. +.++.+.++....+.+++..+.+.+||++|...+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            589999999999999999999998876 4457777777777888888999999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  173 (210)
                      |+++++++..+.. |+..+.... ...+|+++|+||.|+.+.+.+..+++..++...+++++++||+++.|++++|.+++
T Consensus        81 d~~~~~s~~~i~~-~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~  158 (188)
T cd04125          81 DVTDQESFENLKF-WINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLV  158 (188)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999988 888877643 34589999999999987777777788888888889999999999999999999999


Q ss_pred             HHHHcCC
Q 028329          174 LKILDTP  180 (210)
Q Consensus       174 ~~~~~~~  180 (210)
                      +.+.++.
T Consensus       159 ~~~~~~~  165 (188)
T cd04125         159 KLIIKRL  165 (188)
T ss_pred             HHHHHHh
Confidence            9997654

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=9.7e-34  Score=209.99  Aligned_cols=168  Identities=44%  Similarity=0.760  Sum_probs=146.7

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      .+||+++|++|||||||+++|.++.+...+. +.+.++....+.+ ++..+.+.+||++|++.+..++..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            5899999999999999999999988876554 7777777666666 4668899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  171 (210)
                      |||++++++|+.+.. |+..+.........|++||+||.|+...+.+..+++..++..++++++++||+++.|++++|++
T Consensus        82 v~D~~~~~Sf~~l~~-~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~  160 (211)
T cd04111          82 VFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL  160 (211)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999988 8887766554556889999999999877778888888999999999999999999999999999


Q ss_pred             HHHHHHcCCCc
Q 028329          172 LVLKILDTPSL  182 (210)
Q Consensus       172 l~~~~~~~~~~  182 (210)
                      |.+.+.++...
T Consensus       161 l~~~~~~~~~~  171 (211)
T cd04111         161 LTQEIYERIKR  171 (211)
T ss_pred             HHHHHHHHhhc
Confidence            99988766443

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=7.8e-34  Score=205.18  Aligned_cols=161  Identities=25%  Similarity=0.544  Sum_probs=139.6

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||++++..+.+...+. +.+..+ ...+.+++..+.+.+|||+|++.+..+...+++++|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            3799999999999999999999998876554 555444 45678889999999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-cEEEEcc
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYGC-LFIECSA  159 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa  159 (210)
                      ||+++++||+.+...|...+....  ++.|+++||||.|+..            .+.+..+++..++...++ +|++|||
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA  157 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSA  157 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECcc
Confidence            999999999997555988887753  5789999999999954            245788899999999997 7999999


Q ss_pred             CCCCC-HHHHHHHHHHHHH
Q 028329          160 KTRVN-VQQCFEELVLKIL  177 (210)
Q Consensus       160 ~~~~~-i~~~~~~l~~~~~  177 (210)
                      ++|.+ ++++|..+.+..+
T Consensus       158 ~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         158 FTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             CcCCcCHHHHHHHHHHHHh
Confidence            99995 9999999998654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=3e-33  Score=208.65  Aligned_cols=167  Identities=23%  Similarity=0.489  Sum_probs=144.8

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      .....+||+++|++|||||||+++|..+.|...+. +.+..+ ...+.+++..+.+.||||+|++.+..++..+++++|+
T Consensus         9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~   87 (232)
T cd04174           9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA   87 (232)
T ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence            33567999999999999999999999998876554 666555 4457889999999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-cEE
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYGC-LFI  155 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~  155 (210)
                      +++|||++++++|+.+...|+..+....  ++.|++||+||+|+..            .+.+..+++..++...++ .|+
T Consensus        88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~  165 (232)
T cd04174          88 VLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYL  165 (232)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEE
Confidence            9999999999999987555988887643  4689999999999864            256788899999999998 599


Q ss_pred             EEccCCCC-CHHHHHHHHHHHHHcC
Q 028329          156 ECSAKTRV-NVQQCFEELVLKILDT  179 (210)
Q Consensus       156 ~~sa~~~~-~i~~~~~~l~~~~~~~  179 (210)
                      +|||++|. |++++|..++..+.++
T Consensus       166 EtSAktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         166 ECSAFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             EccCCcCCcCHHHHHHHHHHHHHHh
Confidence            99999998 8999999999988764

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=4.1e-35  Score=197.88  Aligned_cols=201  Identities=35%  Similarity=0.643  Sum_probs=169.2

Q ss_pred             ccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028329            8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA   86 (210)
Q Consensus         8 ~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (210)
                      -......|||+++|...+|||||+-|++.++|....- +....+....+.+.+....+.+|||+|++.|..+-+.+++++
T Consensus         7 ~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS   86 (218)
T KOG0088|consen    7 VDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS   86 (218)
T ss_pred             ccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCC
Confidence            3455678999999999999999999999999865554 666667777788888999999999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  166 (210)
                      +++++|||++|.+||+.+.. |...++... ...+.+++|+||+|+++++.+..++++.++...|+.|+++||+.+.||.
T Consensus        87 nGalLVyDITDrdSFqKVKn-WV~Elr~ml-Gnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~  164 (218)
T KOG0088|consen   87 NGALLVYDITDRDSFQKVKN-WVLELRTML-GNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGIS  164 (218)
T ss_pred             CceEEEEeccchHHHHHHHH-HHHHHHHHh-CCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHH
Confidence            99999999999999999999 888888744 4568889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCcccccccCc--------ccccccCCCCccCccCCCCC
Q 028329          167 QCFEELVLKILDTPSLLAEGSKGL--------KKNIFKQKPPEADAAASGCC  210 (210)
Q Consensus       167 ~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~  210 (210)
                      ++|..+...+.+.-++..+...+.        ......+.-++.+...++||
T Consensus       165 elFe~Lt~~MiE~~s~~qr~~~~~s~qpp~t~r~~~~iD~e~~a~~sg~~CC  216 (218)
T KOG0088|consen  165 ELFESLTAKMIEHSSQRQRTRSPLSTQPPSTNRSIRLIDNEAEAERSGKRCC  216 (218)
T ss_pred             HHHHHHHHHHHHHhhhcccccCCcCCCCCCcccchhccCCCcccccccCCcc
Confidence            999999998887665543322111        11223334445566777798

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=1.3e-33  Score=206.49  Aligned_cols=162  Identities=28%  Similarity=0.537  Sum_probs=139.4

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|+++||||||+.++..+.+...+ ++.+..+ ...+.+++..+.+.+||++|++.++.++..+++++|++|+|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            489999999999999999999999986555 4666444 44567788999999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhC-CcEEEEcc
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVTKKEGINFAREYG-CLFIECSA  159 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~sa  159 (210)
                      ||+++++||+.+...|...+...  ..++|++||+||.|+....            .+..+++..++..++ .+++++||
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA  159 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA  159 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence            99999999999986688877654  3579999999999996442            356678888998888 58999999


Q ss_pred             CCCCCHHHHHHHHHHHHHc
Q 028329          160 KTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~  178 (210)
                      ++|.|++++|.++.+.+..
T Consensus       160 k~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         160 LNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999998854

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=1.2e-33  Score=204.92  Aligned_cols=167  Identities=38%  Similarity=0.714  Sum_probs=144.9

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEEC----------CeEEEEEEEeCCCccccccchh
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVG----------GKKLKLAIWDTAGQERFRTLTS   80 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~~~l~D~~g~~~~~~~~~   80 (210)
                      ++.+||+++|++|||||||++++..+.+...+. +.+.++....+.+.          +..+.+.+||++|++.+...+.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            356999999999999999999999988865544 66666665555543          4568999999999999999999


Q ss_pred             hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccC
Q 028329           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK  160 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  160 (210)
                      .+++++|++++|||+++++++..+.. |+..+.......+.|+++|+||+|+...+.+..+++..++...+++++++||+
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak  160 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRN-WMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAA  160 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence            99999999999999999999999988 88888765555678999999999998777778888899999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcC
Q 028329          161 TRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~  179 (210)
                      ++.|++++|++|.+.+.++
T Consensus       161 ~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         161 TGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCCCHHHHHHHHHHHHHhh
Confidence            9999999999999988653

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=3.6e-33  Score=207.24  Aligned_cols=165  Identities=22%  Similarity=0.509  Sum_probs=141.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+.+|..+.++..+. +.+..+ ...+.+++..+.+.+||++|++.+..++..++..+|++++||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            799999999999999999999998876554 665544 356788999999999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-cEEEEccC
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIECSAK  160 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~  160 (210)
                      |++++++|+.+...|...+...  ..++|++||+||+|+...            ..+..+++..++...++ +|+||||+
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~--~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk  158 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEF--CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR  158 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence            9999999999977688777653  467999999999999542            13677889999999996 89999999


Q ss_pred             CCCC-HHHHHHHHHHHHHcCCCc
Q 028329          161 TRVN-VQQCFEELVLKILDTPSL  182 (210)
Q Consensus       161 ~~~~-i~~~~~~l~~~~~~~~~~  182 (210)
                      ++.+ ++++|..+....+.+...
T Consensus       159 ~~~~~V~~~F~~~~~~~~~~~~~  181 (222)
T cd04173         159 SSERSVRDVFHVATVASLGRGHR  181 (222)
T ss_pred             cCCcCHHHHHHHHHHHHHhccCC
Confidence            9885 999999999988775543

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=2.4e-33  Score=201.06  Aligned_cols=164  Identities=54%  Similarity=0.945  Sum_probs=145.5

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ..+||+++|++|||||||++++.++.+...+ ++.+.++....+..++..+.+.+||++|++.+...+..+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            5699999999999999999999999886654 477777777777888888999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  171 (210)
                      |||++++++|..+.. |+..+... ...++|+++|+||+|+.+.+.+..+++..++..++.+++++||+++.|++++|.+
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  159 (167)
T cd01867          82 VYDITDEKSFENIRN-WMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFT  159 (167)
T ss_pred             EEECcCHHHHHhHHH-HHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999988 88888764 3457899999999999877777778888888888999999999999999999999


Q ss_pred             HHHHHHc
Q 028329          172 LVLKILD  178 (210)
Q Consensus       172 l~~~~~~  178 (210)
                      +.+.+.+
T Consensus       160 i~~~~~~  166 (167)
T cd01867         160 LAKDIKK  166 (167)
T ss_pred             HHHHHHh
Confidence            9998864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=3e-33  Score=200.32  Aligned_cols=163  Identities=32%  Similarity=0.601  Sum_probs=143.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+++|+++.+...+. +.+.++....+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999998765544 7777777777888889999999999999999989999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccC----CCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTN----QDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~----~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  169 (210)
                      |++++++++.+.. |+..+......    .+.|+++|+||+|+........++...++...+++++++||+++.|++++|
T Consensus        81 D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  159 (168)
T cd04119          81 DVTDRQSFEALDS-WLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF  159 (168)
T ss_pred             ECCCHHHHHhHHH-HHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            9999999999887 88888765543    579999999999997666677778888888888999999999999999999


Q ss_pred             HHHHHHHHc
Q 028329          170 EELVLKILD  178 (210)
Q Consensus       170 ~~l~~~~~~  178 (210)
                      ++|.+.+++
T Consensus       160 ~~l~~~l~~  168 (168)
T cd04119         160 QTLFSSIVD  168 (168)
T ss_pred             HHHHHHHhC
Confidence            999998764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=3e-33  Score=199.55  Aligned_cols=160  Identities=39%  Similarity=0.680  Sum_probs=138.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||++++..+.+...+. +.+ ......+.+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            799999999999999999999888866554 443 444556778888899999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  173 (210)
                      |++++++++.+.. |...+.......++|+++|+||+|+...+.+..++...++..++.+++++||+++.|++++|+++.
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04136          81 SITSQSSFNDLQD-LREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV  159 (163)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            9999999999988 777776655556799999999999977677777777788888888999999999999999999998


Q ss_pred             HHH
Q 028329          174 LKI  176 (210)
Q Consensus       174 ~~~  176 (210)
                      +.+
T Consensus       160 ~~~  162 (163)
T cd04136         160 RQI  162 (163)
T ss_pred             Hhc
Confidence            764

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=4.9e-34  Score=193.57  Aligned_cols=171  Identities=46%  Similarity=0.801  Sum_probs=154.1

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      ..+.++++++|++-+|||+|+++++.+++++... +.|.+++..-+.+ .|..+++++|||+|++.+++....+++++-+
T Consensus         5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg   84 (213)
T KOG0091|consen    5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG   84 (213)
T ss_pred             eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence            4578999999999999999999999999988765 8898888776655 7778999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhccCCC-CcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD-CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  167 (210)
                      +++|||+++.+||+.+.. |......+...+. +-+.+||+|+|+...+.+..++++.++..+|..|+++|+++|.|+++
T Consensus        85 vllvyditnr~sfehv~~-w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeE  163 (213)
T KOG0091|consen   85 VLLVYDITNRESFEHVEN-WVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEE  163 (213)
T ss_pred             eEEEEeccchhhHHHHHH-HHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHH
Confidence            999999999999999999 8888877776444 45568999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCc
Q 028329          168 CFEELVLKILDTPSL  182 (210)
Q Consensus       168 ~~~~l~~~~~~~~~~  182 (210)
                      .|+.|.+.++..-.+
T Consensus       164 AF~mlaqeIf~~i~q  178 (213)
T KOG0091|consen  164 AFDMLAQEIFQAIQQ  178 (213)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999988665444

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=4.3e-33  Score=203.25  Aligned_cols=166  Identities=30%  Similarity=0.536  Sum_probs=138.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      +||+++|++|||||||+++|.++.+...+. +.+..+. ..+... +..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            589999999999999999999998875554 4444443 334554 6788999999999999999998899999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc----eecHHHHHHHHHHhCC-cEEEEccCCCCCHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER----VVTKKEGINFAREYGC-LFIECSAKTRVNVQQ  167 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~----~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~  167 (210)
                      ||+++.++|+.+...|...+...  ..++|+++|+||.|+....    .+..+++..++...+. +++++||++|.|+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  157 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEE  157 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHH
Confidence            99999999999976687777653  3578999999999985432    4567788888888888 899999999999999


Q ss_pred             HHHHHHHHHHcCCCcc
Q 028329          168 CFEELVLKILDTPSLL  183 (210)
Q Consensus       168 ~~~~l~~~~~~~~~~~  183 (210)
                      +|..+.+.+.+.....
T Consensus       158 ~f~~l~~~~~~~~~~~  173 (187)
T cd04132         158 VFDTAIEEALKKEGKA  173 (187)
T ss_pred             HHHHHHHHHHhhhhhh
Confidence            9999999998666444

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=8e-33  Score=197.94  Aligned_cols=162  Identities=50%  Similarity=0.851  Sum_probs=142.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+++|.++.+...+ ++.+.++....+..++..+.+.+||++|+..+...+..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999886544 47776777667777888899999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  173 (210)
                      |.++.++++.+.. |+..+.... ....|+++|+||+|+...+....++...++...+.+++++||+++.|++++|+++.
T Consensus        82 d~~~~~s~~~~~~-~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  159 (165)
T cd01865          82 DITNEESFNAVQD-WSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLV  159 (165)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999988 888876533 34689999999999977777777788888888899999999999999999999999


Q ss_pred             HHHHc
Q 028329          174 LKILD  178 (210)
Q Consensus       174 ~~~~~  178 (210)
                      ..+.+
T Consensus       160 ~~~~~  164 (165)
T cd01865         160 DIICD  164 (165)
T ss_pred             HHHHh
Confidence            87643

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=6e-33  Score=198.36  Aligned_cols=161  Identities=42%  Similarity=0.690  Sum_probs=139.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+++++.+.+...++ +.+..+ ...+.+++..+.+.+||+||+..+..++..+++++|++++||
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            799999999999999999999887765444 554443 455777888899999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  173 (210)
                      |+++..+++.+.. |...+.......+.|+++|+||+|+.....+..+++..++..++++++++||+++.|++++|.++.
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175          81 SITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999988 666665545567899999999999987777777777888888899999999999999999999999


Q ss_pred             HHHH
Q 028329          174 LKIL  177 (210)
Q Consensus       174 ~~~~  177 (210)
                      +.+.
T Consensus       160 ~~l~  163 (164)
T cd04175         160 RQIN  163 (164)
T ss_pred             HHhh
Confidence            8763

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=7.9e-33  Score=198.12  Aligned_cols=163  Identities=56%  Similarity=0.928  Sum_probs=144.3

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||++++.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            489999999999999999999988876544 4777777777778888889999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  172 (210)
                      ||+++++++..+.. |+..+.... ..+.|+++|+||.|+...+.+..+++..++...+++++++||+++.|++++|.++
T Consensus        82 ~d~~~~~s~~~l~~-~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  159 (166)
T cd01869          82 YDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTM  159 (166)
T ss_pred             EECcCHHHHHhHHH-HHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHH
Confidence            99999999999988 888877643 3568999999999997777777888889999899999999999999999999999


Q ss_pred             HHHHHc
Q 028329          173 VLKILD  178 (210)
Q Consensus       173 ~~~~~~  178 (210)
                      .+.+.+
T Consensus       160 ~~~~~~  165 (166)
T cd01869         160 AREIKK  165 (166)
T ss_pred             HHHHHh
Confidence            998753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=1.7e-32  Score=201.06  Aligned_cols=163  Identities=34%  Similarity=0.580  Sum_probs=140.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCC--CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEE--LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      +||+++|++|||||||+++|..+.+..  +.++.+.++....+.+++..+.+.+||++|...+..++..++.++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            489999999999999999999988864  445777777777788899999999999999999998998899999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC----ceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE----RVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  168 (210)
                      ||+++.++++.+.. |+..+...  ..+.|+++|+||+|+...    +.+..+++..++...+++++++||+++.|++++
T Consensus        81 ~d~~~~~s~~~~~~-~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  157 (193)
T cd04118          81 YDLTDSSSFERAKF-WVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDEL  157 (193)
T ss_pred             EECCCHHHHHHHHH-HHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            99999999999877 88877653  347899999999998532    344556677778888899999999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028329          169 FEELVLKILDTP  180 (210)
Q Consensus       169 ~~~l~~~~~~~~  180 (210)
                      |+++.+.+.++.
T Consensus       158 ~~~i~~~~~~~~  169 (193)
T cd04118         158 FQKVAEDFVSRA  169 (193)
T ss_pred             HHHHHHHHHHhc
Confidence            999999997654

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=7.8e-33  Score=199.67  Aligned_cols=159  Identities=30%  Similarity=0.566  Sum_probs=135.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||++++..+.+...+ |+.+..+ ...+.+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-EEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            79999999999999999999999885544 4665544 345677888899999999999999999988999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhC-CcEEEEccC
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYG-CLFIECSAK  160 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa~  160 (210)
                      |++++++|+.+...|...+...  ..++|++||+||+|+...            +.+..+++..++...+ +.++++||+
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~  158 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL  158 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence            9999999999986688888764  357899999999998543            4566778888888887 689999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028329          161 TRVNVQQCFEELVLKI  176 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~  176 (210)
                      +|.|++++|+.+++..
T Consensus       159 tg~~v~~~f~~~~~~~  174 (175)
T cd01874         159 TQKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=7.3e-33  Score=197.38  Aligned_cols=159  Identities=46%  Similarity=0.848  Sum_probs=141.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||++++..+.+...+ ++.+.++....+.+++..+.+.+||++|+..+...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999998886543 47777777777888888899999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  173 (210)
                      |++++++|+.+.. |+..+.... ..+.|+++|+||.|+...+.+..+++..+++.++++++++||+++.|++++|.+|.
T Consensus        81 d~~~~~sf~~~~~-~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~  158 (161)
T cd04117          81 DISSERSYQHIMK-WVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLT  158 (161)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999987 888776543 34689999999999987777888889999998999999999999999999999998


Q ss_pred             HH
Q 028329          174 LK  175 (210)
Q Consensus       174 ~~  175 (210)
                      +.
T Consensus       159 ~~  160 (161)
T cd04117         159 EL  160 (161)
T ss_pred             hh
Confidence            65

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=1e-32  Score=201.51  Aligned_cols=163  Identities=31%  Similarity=0.510  Sum_probs=136.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      .||+++|++|||||||+++|..+.+...+. +.+..+ ...+..++..+.+.+||++|++.+..++..++..+|++++||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            389999999999999999999998876554 555443 345667888899999999999999999988999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhC-CcEEEEccC
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVTKKEGINFAREYG-CLFIECSAK  160 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~sa~  160 (210)
                      |++++++|+.+...|+..+...  ..+.|+++|+||+|+....            .+..+++..++...+ +.+++|||+
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  157 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAK  157 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCC
Confidence            9999999999976688888754  3478999999999996543            245566777777776 689999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCC
Q 028329          161 TRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~~  180 (210)
                      +|.|++++|.++.+.+...+
T Consensus       158 ~~~~v~e~f~~l~~~~~~~~  177 (189)
T cd04134         158 LNRGVNEAFTEAARVALNVR  177 (189)
T ss_pred             cCCCHHHHHHHHHHHHhccc
Confidence            99999999999999987433

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=6.6e-33  Score=197.71  Aligned_cols=160  Identities=45%  Similarity=0.754  Sum_probs=147.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      ||+++|+++||||||+++|.++.+...+. +.+.+.....+..++..+.+.+||++|++.+..+...+++++|++++|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999998876665 77788888889999999999999999999999989999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHH
Q 028329           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVL  174 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~  174 (210)
                      +++++|++.+.. |...+..... .+.|++|++||.|+...+.+..++++.++..++++|+++|++++.|+.++|..+++
T Consensus        81 ~~~~~S~~~~~~-~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~  158 (162)
T PF00071_consen   81 VTDEESFENLKK-WLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIR  158 (162)
T ss_dssp             TTBHHHHHTHHH-HHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHH
T ss_pred             cccccccccccc-cccccccccc-ccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999997 9999887654 56899999999999888889999999999999999999999999999999999999


Q ss_pred             HHH
Q 028329          175 KIL  177 (210)
Q Consensus       175 ~~~  177 (210)
                      .+.
T Consensus       159 ~i~  161 (162)
T PF00071_consen  159 KIL  161 (162)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=2e-32  Score=204.02  Aligned_cols=165  Identities=33%  Similarity=0.534  Sum_probs=141.9

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...+||+++|++|||||||+++++.+.+...+ ++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            67799999999999999999999988886544 48888887777777888899999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      +|||+++++++..+.. |+..+....  .+.|+++|+||+|+... .+..+++ .++...++.++++||++|.|++++|.
T Consensus        91 lvfD~~~~~s~~~i~~-w~~~i~~~~--~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~  165 (219)
T PLN03071         91 IMFDVTARLTYKNVPT-WHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFL  165 (219)
T ss_pred             EEEeCCCHHHHHHHHH-HHHHHHHhC--CCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHH
Confidence            9999999999999987 888887643  57999999999998533 2333444 66777788999999999999999999


Q ss_pred             HHHHHHHcCCC
Q 028329          171 ELVLKILDTPS  181 (210)
Q Consensus       171 ~l~~~~~~~~~  181 (210)
                      +|.+.+.+...
T Consensus       166 ~l~~~~~~~~~  176 (219)
T PLN03071        166 YLARKLAGDPN  176 (219)
T ss_pred             HHHHHHHcCcc
Confidence            99999976644

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=1.3e-32  Score=196.57  Aligned_cols=162  Identities=40%  Similarity=0.654  Sum_probs=139.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|++|||||||+++|.++.+...+.....+.......+++..+.+.+||+||++.+...+..++..+|++++|||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            58999999999999999999988876655432233445566778888999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHH
Q 028329           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVL  174 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~  174 (210)
                      ++++++++.+.. |...+.......+.|+++|+||+|+...+....+++..++...+++++++||+++.|++++|++|++
T Consensus        81 ~~~~~s~~~~~~-~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       81 ITDRQSFEEIKK-FREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            999999999988 6666665555567999999999999877777777888888888999999999999999999999998


Q ss_pred             HHH
Q 028329          175 KIL  177 (210)
Q Consensus       175 ~~~  177 (210)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=3e-32  Score=195.57  Aligned_cols=164  Identities=50%  Similarity=0.878  Sum_probs=145.3

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ..+||+++|++|||||||++++.++.+...++ +.+.++....+..++....+.+||++|++.+...+..+++.+|++++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999999988766554 77777777778888888999999999999999988999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  171 (210)
                      |||+++++++..+.. |+..+.... .++.|++||+||.|+.....+..+++..++...++.++++||+++.|++++|.+
T Consensus        83 v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~  160 (168)
T cd01866          83 VYDITRRETFNHLTS-WLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFIN  160 (168)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999988 888776643 467999999999999777777888888888888999999999999999999999


Q ss_pred             HHHHHHc
Q 028329          172 LVLKILD  178 (210)
Q Consensus       172 l~~~~~~  178 (210)
                      +.+.+.+
T Consensus       161 ~~~~~~~  167 (168)
T cd01866         161 TAKEIYE  167 (168)
T ss_pred             HHHHHHh
Confidence            9998764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=1.8e-32  Score=197.55  Aligned_cols=158  Identities=30%  Similarity=0.540  Sum_probs=135.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+.++..+.+...+. +.+ ......+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            799999999999999999999988865554 544 344455677888899999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-cEEEEccC
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIECSAK  160 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~  160 (210)
                      |++++++|..+...|...+...  ..++|++||+||.|+...            +.+..+++..++..++. ++++|||+
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  158 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence            9999999999976688877654  357999999999999543            24677888899998885 89999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 028329          161 TRVNVQQCFEELVLK  175 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~  175 (210)
                      +|.|++++|+.+.+.
T Consensus       159 ~~~~i~~~f~~l~~~  173 (174)
T cd01871         159 TQKGLKTVFDEAIRA  173 (174)
T ss_pred             ccCCHHHHHHHHHHh
Confidence            999999999998864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=1.7e-32  Score=195.75  Aligned_cols=161  Identities=37%  Similarity=0.594  Sum_probs=138.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|++|||||||++++..+.+...+.+....+....+.+++....+.+||++|++.+..++..+++++|++++|||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d   81 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYS   81 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEE
Confidence            79999999999999999999999887655533334556677788888999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHH
Q 028329           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVL  174 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~  174 (210)
                      ++++.++.++.. |...+.......++|+++|+||+|+.....+...+...++...+++++++||+++.|++++|.++.+
T Consensus        82 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04176          82 LVNQQTFQDIKP-MRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR  160 (163)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence            999999999988 7777765544568999999999999766666666777888778889999999999999999999987


Q ss_pred             HH
Q 028329          175 KI  176 (210)
Q Consensus       175 ~~  176 (210)
                      .+
T Consensus       161 ~l  162 (163)
T cd04176         161 QM  162 (163)
T ss_pred             hc
Confidence            54

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=7.9e-32  Score=199.77  Aligned_cols=166  Identities=48%  Similarity=0.845  Sum_probs=145.8

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ++.+||+++|++|||||||+++|+...+...+ ++.+.++....+.+++..+.+.+||++|...+...+..+++.+|+++
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            45699999999999999999999988876544 47777777777888888899999999999999989999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      +|||+++++++..+.. |+..+.... ....|+++|+||.|+...+.+..+++..++..++++++++||+++.|++++|.
T Consensus        84 lv~D~~~~~s~~~l~~-~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~  161 (210)
T PLN03108         84 LVYDITRRETFNHLAS-WLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (210)
T ss_pred             EEEECCcHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999887 776665432 35789999999999987777888888999999999999999999999999999


Q ss_pred             HHHHHHHcC
Q 028329          171 ELVLKILDT  179 (210)
Q Consensus       171 ~l~~~~~~~  179 (210)
                      ++++.+.++
T Consensus       162 ~l~~~~~~~  170 (210)
T PLN03108        162 KTAAKIYKK  170 (210)
T ss_pred             HHHHHHHHH
Confidence            999988764

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=3.9e-32  Score=197.05  Aligned_cols=163  Identities=28%  Similarity=0.572  Sum_probs=138.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+++|..+.+...+ ++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999887644 58888887777888998999999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC-----CceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES-----ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  168 (210)
                      |+++++++..+.. |+..+.... ....| ++|+||+|+..     ......+++..++...+++++++||++|.|++++
T Consensus        81 D~t~~~s~~~i~~-~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~l  157 (182)
T cd04128          81 DLTRKSTLNSIKE-WYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKI  157 (182)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            9999999999987 888776543 33466 67899999842     1112245677788888899999999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028329          169 FEELVLKILDTP  180 (210)
Q Consensus       169 ~~~l~~~~~~~~  180 (210)
                      |.++.+.+.+.+
T Consensus       158 f~~l~~~l~~~~  169 (182)
T cd04128         158 FKIVLAKAFDLP  169 (182)
T ss_pred             HHHHHHHHHhcC
Confidence            999999887644

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=4e-32  Score=194.28  Aligned_cols=161  Identities=45%  Similarity=0.806  Sum_probs=140.8

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      +.+||+++|++|||||||+++|..+.+...+. +.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            56999999999999999999999888766554 66667777778888888899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCCCHHHHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~  170 (210)
                      |||++++.+++.+.. |+..+... ...++|+++|+||+|+...+.+..+++..+++..+. .++++||++|.|++++|.
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~  159 (165)
T cd01864          82 AYDITRRSSFESVPH-WIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFL  159 (165)
T ss_pred             EEECcCHHHHHhHHH-HHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence            999999999999887 88877653 345789999999999987777777788888888876 589999999999999999


Q ss_pred             HHHHH
Q 028329          171 ELVLK  175 (210)
Q Consensus       171 ~l~~~  175 (210)
                      ++.+.
T Consensus       160 ~l~~~  164 (165)
T cd01864         160 LMATE  164 (165)
T ss_pred             HHHHh
Confidence            99865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=5.4e-32  Score=194.46  Aligned_cols=162  Identities=33%  Similarity=0.588  Sum_probs=139.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      ||+++|++|||||||++++..+.+...+ ++.+.++....+.+++....+.+||++|++.+..++..+++.+|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            7999999999999999999999887555 577778777778888889999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  172 (210)
                      +++.+++..+.. |+..+.........|+++|+||.|+.....  ...+++..++..++.+++++||+++.|++++|..+
T Consensus        82 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l  160 (170)
T cd04108          82 LTDVASLEHTRQ-WLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRV  160 (170)
T ss_pred             CcCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            999999999987 887765433334578999999999855433  24556677778888899999999999999999999


Q ss_pred             HHHHHc
Q 028329          173 VLKILD  178 (210)
Q Consensus       173 ~~~~~~  178 (210)
                      .+.+.+
T Consensus       161 ~~~~~~  166 (170)
T cd04108         161 AALTFE  166 (170)
T ss_pred             HHHHHH
Confidence            998854

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=4.5e-32  Score=194.04  Aligned_cols=159  Identities=33%  Similarity=0.469  Sum_probs=134.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+++++++.+...+. +.+. .+...+..+...+.+.+||++|++.+..++...+..+|++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIED-TYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchh-eEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            799999999999999999999988865544 4433 33444566778899999999999999988888899999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYST--NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  171 (210)
                      |+++.++++.+.. |+..+.....  ..++|+++|+||+|+...+.+..+++..++...++.++++||++|.|++++|++
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~  159 (165)
T cd04140          81 SVTSKQSLEELKP-IYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE  159 (165)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence            9999999999988 6666655322  257899999999999776777777778888888899999999999999999999


Q ss_pred             HHHH
Q 028329          172 LVLK  175 (210)
Q Consensus       172 l~~~  175 (210)
                      |++.
T Consensus       160 l~~~  163 (165)
T cd04140         160 LLNL  163 (165)
T ss_pred             HHhc
Confidence            8753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=5.5e-32  Score=192.68  Aligned_cols=159  Identities=35%  Similarity=0.593  Sum_probs=135.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+++|+++.+...+. +.+. .....+.+++....+.+||++|++.+..++..+++++|++++||
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchh-eEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            799999999999999999999888765554 4443 33555677888888999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  173 (210)
                      |+++..++..+.. |...+.......+.|+++|+||+|+.. +.....++..++...+++++++||+++.|++++|.+++
T Consensus        81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138          81 AINSRKSFEDIHT-YREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence            9999999999887 666666555556899999999999865 45556677788888899999999999999999999998


Q ss_pred             HHH
Q 028329          174 LKI  176 (210)
Q Consensus       174 ~~~  176 (210)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04138         159 REI  161 (162)
T ss_pred             HHh
Confidence            764

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=4e-32  Score=193.50  Aligned_cols=159  Identities=48%  Similarity=0.800  Sum_probs=140.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+++|.++.+...+. +.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            589999999999999999999988765544 7777777777788888899999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  173 (210)
                      |+++++++..+.. |+..+... ...++|+++|+||.|+.....+..+++..++...++.++++||+++.|++++|+++.
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~  158 (161)
T cd04113          81 DITNRTSFEALPT-WLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCA  158 (161)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999987 77776553 346799999999999987777888888999999999999999999999999999998


Q ss_pred             HH
Q 028329          174 LK  175 (210)
Q Consensus       174 ~~  175 (210)
                      +.
T Consensus       159 ~~  160 (161)
T cd04113         159 RS  160 (161)
T ss_pred             Hh
Confidence            75

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=6.6e-32  Score=192.80  Aligned_cols=161  Identities=37%  Similarity=0.587  Sum_probs=137.5

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|+|||||++++.++.+...++ +.+ ........+++..+.+.+||+||+..+..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc-ceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            4799999999999999999999887755444 433 33344566788889999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  172 (210)
                      ||+++..++..+.. |...+.......+.|+++++||+|+...+.+..+++..++...+++++++||+++.|++++|+++
T Consensus        81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  159 (164)
T cd04145          81 FSVTDRGSFEEVDK-FHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL  159 (164)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence            99999999999988 66666655555689999999999998777777777888888888999999999999999999999


Q ss_pred             HHHH
Q 028329          173 VLKI  176 (210)
Q Consensus       173 ~~~~  176 (210)
                      ++.+
T Consensus       160 ~~~~  163 (164)
T cd04145         160 VRVI  163 (164)
T ss_pred             HHhh
Confidence            8765

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=6.7e-32  Score=193.30  Aligned_cols=161  Identities=34%  Similarity=0.602  Sum_probs=136.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||++++..+.+... .++.+.++....+..++..+.+.+||++|++.+..++..++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            5899999999999999999998776543 447777777777777888899999999999998888888999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  173 (210)
                      |+++.+++..+.. |...+.....  ++|+++|+||+|+... ... .+...++...+++++++||++|.|++++|++|.
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~--~~piiiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~  155 (166)
T cd00877          81 DVTSRVTYKNVPN-WHRDLVRVCG--NIPIVLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLA  155 (166)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhCC--CCcEEEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHH
Confidence            9999999999987 8888876543  7999999999998632 232 334566667778999999999999999999999


Q ss_pred             HHHHcCC
Q 028329          174 LKILDTP  180 (210)
Q Consensus       174 ~~~~~~~  180 (210)
                      +.+.+..
T Consensus       156 ~~~~~~~  162 (166)
T cd00877         156 RKLLGNP  162 (166)
T ss_pred             HHHHhcc
Confidence            9987644

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9e-33  Score=184.91  Aligned_cols=169  Identities=43%  Similarity=0.795  Sum_probs=154.9

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      +..+||+++|..|+|||+|+++++.+-|+.... +.|.++-...+.+++.++++++|||+|++.+++....+++.++++|
T Consensus         5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali   84 (213)
T KOG0095|consen    5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (213)
T ss_pred             ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence            567999999999999999999999999876555 9999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      +|||++...+|.-+.+ |+..+..|.+.. +--|+|+||.|+.+.+++..+.+++++......|+++||++..|++.+|.
T Consensus        85 lvydiscqpsfdclpe-wlreie~yan~k-vlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~  162 (213)
T KOG0095|consen   85 LVYDISCQPSFDCLPE-WLREIEQYANNK-VLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL  162 (213)
T ss_pred             EEEecccCcchhhhHH-HHHHHHHHhhcc-eEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence            9999999999999999 999999987664 56689999999998889999989999888888899999999999999999


Q ss_pred             HHHHHHHcCCCc
Q 028329          171 ELVLKILDTPSL  182 (210)
Q Consensus       171 ~l~~~~~~~~~~  182 (210)
                      .+...+.....+
T Consensus       163 ~~a~rli~~ar~  174 (213)
T KOG0095|consen  163 DLACRLISEARQ  174 (213)
T ss_pred             HHHHHHHHHHHh
Confidence            998877654433

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=7.8e-32  Score=192.75  Aligned_cols=162  Identities=47%  Similarity=0.820  Sum_probs=142.5

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ..+||+++|++|||||||+++|.++.+... .++.+.++....+..++..+.+.+||+||+..+..++..+++.++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            458999999999999999999998887644 4577777777788888888999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  171 (210)
                      |||++++.++..+.. |+..+.... ..++|+++|+||.|+...+.+..++...++...+++++++||+++.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  159 (165)
T cd01868          82 VYDITKKQTFENVER-WLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQ  159 (165)
T ss_pred             EEECcCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999987 888776643 335899999999999877777777888888888899999999999999999999


Q ss_pred             HHHHH
Q 028329          172 LVLKI  176 (210)
Q Consensus       172 l~~~~  176 (210)
                      +...+
T Consensus       160 l~~~i  164 (165)
T cd01868         160 LLTEI  164 (165)
T ss_pred             HHHHh
Confidence            98775

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=8.5e-32  Score=193.54  Aligned_cols=162  Identities=38%  Similarity=0.685  Sum_probs=142.8

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccc-cchhhcccCccEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-TLTSSYYRGAQGIIM   91 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~~i~   91 (210)
                      .+||+++|++|||||||+++++.+.+...+ ++.+.++....+.+++..+.+.+||++|++.+. ..+..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            589999999999999999999988876544 477777777778888989999999999998876 467888999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCC---CCCHHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT---RVNVQQC  168 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~---~~~i~~~  168 (210)
                      |||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||++   +.+++++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~  160 (170)
T cd04115          82 VYDVTNMASFHSLPS-WIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI  160 (170)
T ss_pred             EEECCCHHHHHhHHH-HHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence            999999999999988 888887766667899999999999987777777888888888889999999999   8899999


Q ss_pred             HHHHHHHH
Q 028329          169 FEELVLKI  176 (210)
Q Consensus       169 ~~~l~~~~  176 (210)
                      |.++.+.+
T Consensus       161 f~~l~~~~  168 (170)
T cd04115         161 FMTLAHKL  168 (170)
T ss_pred             HHHHHHHh
Confidence            99998766

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=9.4e-32  Score=193.93  Aligned_cols=160  Identities=32%  Similarity=0.583  Sum_probs=136.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT   96 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   96 (210)
                      |+++|++|||||||+++|..+.+...+...........+.+++..+.+.+||++|++.+..++..+++.+|++|+|||++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            58999999999999999999988765543333344456677888899999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhCC-cEEEEccCCCC
Q 028329           97 RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVTKKEGINFAREYGC-LFIECSAKTRV  163 (210)
Q Consensus        97 ~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~sa~~~~  163 (210)
                      ++++|+.+...|+..+...  ..++|+++|+||+|+....            .+..+++..++...+. .++++||+++.
T Consensus        81 ~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       81 SPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999976688888764  3579999999999996432            3667778889999886 89999999999


Q ss_pred             CHHHHHHHHHHHHHc
Q 028329          164 NVQQCFEELVLKILD  178 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~  178 (210)
                      |++++|+.+.+.+++
T Consensus       159 ~v~~lf~~l~~~~~~  173 (174)
T smart00174      159 GVREVFEEAIRAALN  173 (174)
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999988754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=1.6e-31  Score=190.79  Aligned_cols=162  Identities=56%  Similarity=0.928  Sum_probs=142.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+++|.+..+...+ ++.+.++....+..++..+.+.+||+||+..+...+..+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999988875444 47777777777888888889999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  173 (210)
                      |++++.+++.+.. |+..+..+.. .++|+++|+||+|+...+.+..+.+..++...+++++++|++++.|++++|+++.
T Consensus        81 d~~~~~s~~~~~~-~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~  158 (164)
T smart00175       81 DITNRESFENLKN-WLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELA  158 (164)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999887 8887776542 5799999999999977667777788888888899999999999999999999999


Q ss_pred             HHHHc
Q 028329          174 LKILD  178 (210)
Q Consensus       174 ~~~~~  178 (210)
                      +.+.+
T Consensus       159 ~~~~~  163 (164)
T smart00175      159 REILK  163 (164)
T ss_pred             HHHhh
Confidence            98865

Rab GTPases are implicated in vesicle trafficking.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=9.9e-32  Score=191.58  Aligned_cols=158  Identities=35%  Similarity=0.594  Sum_probs=137.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEEC--CeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVG--GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      +||+++|++|+|||||+++++++.+...+ ++.+.++....+.+.  +..+.+.+||+||++.+...+..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            58999999999999999999998876544 477777766666666  778999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  171 (210)
                      |||+++++++..+.. |...+...  ..++|+++|+||.|+.....+..+++..++...+++++++|++++.|++++|++
T Consensus        81 v~d~~~~~s~~~l~~-~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  157 (162)
T cd04106          81 VFSTTDRESFEAIES-WKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEY  157 (162)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            999999999999887 88777643  357899999999999777777778888889999999999999999999999999


Q ss_pred             HHHH
Q 028329          172 LVLK  175 (210)
Q Consensus       172 l~~~  175 (210)
                      |...
T Consensus       158 l~~~  161 (162)
T cd04106         158 LAEK  161 (162)
T ss_pred             HHHh
Confidence            8754

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=2.3e-31  Score=191.28  Aligned_cols=162  Identities=41%  Similarity=0.704  Sum_probs=139.2

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...+||+++|++|||||||++++..+.+...+ ++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            46799999999999999999999988876544 47777776777788999999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCCCHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYST---NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQ  166 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~  166 (210)
                      +|||+++++++..+.. |...+.....   ..++|+++|+||.|+. .+.+..+++..++..++. +++++||+++.|+.
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  160 (170)
T cd04116          83 LTFAVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA  160 (170)
T ss_pred             EEEECCCHHHHHhHHH-HHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence            9999999999999887 7766654332   3568999999999986 555667788888888874 79999999999999


Q ss_pred             HHHHHHHHH
Q 028329          167 QCFEELVLK  175 (210)
Q Consensus       167 ~~~~~l~~~  175 (210)
                      ++|.++++.
T Consensus       161 ~~~~~~~~~  169 (170)
T cd04116         161 AAFEEAVRR  169 (170)
T ss_pred             HHHHHHHhh
Confidence            999999865

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-32  Score=183.42  Aligned_cols=172  Identities=47%  Similarity=0.788  Sum_probs=157.6

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      +.-++.+|++++|+.|+|||+|++++..++|..... +.|.++...-+.+.+..+++++|||+|++.+++..+.+++++.
T Consensus         4 EtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAA   83 (214)
T KOG0086|consen    4 ETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA   83 (214)
T ss_pred             hhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence            344678999999999999999999999999977666 9999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  167 (210)
                      +.++|||+++.++|+.+.. |+.-.+- ...+++-+++++||.|+...+.+...++..++.+..+.+.++|+++|+|+++
T Consensus        84 GAlLVYD~TsrdsfnaLtn-WL~DaR~-lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE  161 (214)
T KOG0086|consen   84 GALLVYDITSRDSFNALTN-WLTDART-LASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE  161 (214)
T ss_pred             ceEEEEeccchhhHHHHHH-HHHHHHh-hCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence            9999999999999999999 9888876 4466788899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCc
Q 028329          168 CFEELVLKILDTPSL  182 (210)
Q Consensus       168 ~~~~l~~~~~~~~~~  182 (210)
                      .|-...+.++.+-+.
T Consensus       162 aFl~c~~tIl~kIE~  176 (214)
T KOG0086|consen  162 AFLKCARTILNKIES  176 (214)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999888877665544

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=4.2e-31  Score=188.32  Aligned_cols=159  Identities=34%  Similarity=0.572  Sum_probs=134.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||++++..+.+...+. +.+.++......+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            589999999999999999999988865544 6666666666777888999999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  173 (210)
                      |++++.++..+.. |+..+...  ..+.|+++|+||+|+...   ..++...++...+++++++||+++.|++++|+.+.
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~--~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  154 (161)
T cd04124          81 DVTRKITYKNLSK-WYEELREY--RPEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAI  154 (161)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHh--CCCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999877 88877653  346899999999998532   12344556666788999999999999999999999


Q ss_pred             HHHHcC
Q 028329          174 LKILDT  179 (210)
Q Consensus       174 ~~~~~~  179 (210)
                      +.+.++
T Consensus       155 ~~~~~~  160 (161)
T cd04124         155 KLAVSY  160 (161)
T ss_pred             HHHHhc
Confidence            988765

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=3.1e-31  Score=194.61  Aligned_cols=167  Identities=25%  Similarity=0.393  Sum_probs=134.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhhcccC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSSYYRG   85 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~~   85 (210)
                      +||+++|++|||||||+++|.++.+...+ |+.+.++....+.+++..+.+.+||+||...+...        ....+..
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            58999999999999999999998886644 46555565566777888899999999996543221        2334788


Q ss_pred             ccEEEEEEeCCCcccHHHHHHHHHHHHhhhc--cCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-HhCCcEEEEccCCC
Q 028329           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS--TNQDCIKLLVGNKVDKESERVVTKKEGINFAR-EYGCLFIECSAKTR  162 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~  162 (210)
                      +|++++|||++++++++.+.. |...+....  ...++|+++|+||+|+...+....++...++. .++++++++||++|
T Consensus        81 ad~iilv~D~~~~~S~~~~~~-~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g  159 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKL-LRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN  159 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence            999999999999999999988 666665433  24679999999999997766666666666654 56889999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCc
Q 028329          163 VNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~~~~~~  182 (210)
                      .|++++|..+++.++.+...
T Consensus       160 ~~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         160 WHILLLFKELLISATTRGRS  179 (198)
T ss_pred             CCHHHHHHHHHHHhhccCCC
Confidence            99999999999988866654

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=5.4e-31  Score=187.96  Aligned_cols=161  Identities=46%  Similarity=0.769  Sum_probs=142.2

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||+++|.++.+.. ..++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            3799999999999999999999998876 455777777777788889999999999999999998898899999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  172 (210)
                      +|+++++++..... |+..+.... ...+|+++++||+|+........++...++...+++++++||++|.|+.++|+++
T Consensus        81 ~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (163)
T cd01860          81 YDITSEESFEKAKS-WVKELQRNA-SPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEI  158 (163)
T ss_pred             EECcCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            99999999999987 777776543 3679999999999997666677778888888888999999999999999999999


Q ss_pred             HHHH
Q 028329          173 VLKI  176 (210)
Q Consensus       173 ~~~~  176 (210)
                      .+.+
T Consensus       159 ~~~l  162 (163)
T cd01860         159 AKKL  162 (163)
T ss_pred             HHHh
Confidence            9875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-33  Score=190.98  Aligned_cols=171  Identities=37%  Similarity=0.679  Sum_probs=154.6

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEE---------CCeEEEEEEEeCCCccccccchhh
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDV---------GGKKLKLAIWDTAGQERFRTLTSS   81 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~~~~l~D~~g~~~~~~~~~~   81 (210)
                      ++.||.+.+|++|+||||++++++.++|..... +.+.++....+.+         .+..+.+++|||+|++.++++..+
T Consensus         7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA   86 (219)
T KOG0081|consen    7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA   86 (219)
T ss_pred             HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence            567899999999999999999999999865444 8888887777655         234588999999999999999999


Q ss_pred             cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCC
Q 028329           82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT  161 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  161 (210)
                      +++.+-+++++||+++..||.++++ |+..+.-..-..+.-|++++||+|++..+.+...++..++.++++|||++||-+
T Consensus        87 FfRDAMGFlLiFDlT~eqSFLnvrn-WlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t  165 (219)
T KOG0081|consen   87 FFRDAMGFLLIFDLTSEQSFLNVRN-WLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT  165 (219)
T ss_pred             HHHhhccceEEEeccchHHHHHHHH-HHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence            9999999999999999999999999 999998777677788899999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCcc
Q 028329          162 RVNVQQCFEELVLKILDTPSLL  183 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~~~~~~~~  183 (210)
                      |.|+++..+.++..++++.++.
T Consensus       166 g~Nv~kave~LldlvM~Rie~~  187 (219)
T KOG0081|consen  166 GTNVEKAVELLLDLVMKRIEQC  187 (219)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998887664

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=6.5e-31  Score=192.69  Aligned_cols=157  Identities=32%  Similarity=0.573  Sum_probs=136.2

Q ss_pred             EcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCc
Q 028329           20 IGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR   98 (210)
Q Consensus        20 ~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   98 (210)
                      +|++|||||||+++++.+.+...+ ++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++|+|||+++.
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            699999999999999988886544 5888888888888888999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329           99 DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus        99 ~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      .+|..+.. |+..+....  .++|+++|+||+|+.. +.+..+. ..++...++.+++|||+++.|++++|.+|++.+.+
T Consensus        81 ~S~~~i~~-w~~~i~~~~--~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~  155 (200)
T smart00176       81 VTYKNVPN-WHRDLVRVC--ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG  155 (200)
T ss_pred             HHHHHHHH-HHHHHHHhC--CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            99999987 999887643  5799999999999853 3334433 46777788999999999999999999999999977


Q ss_pred             CCC
Q 028329          179 TPS  181 (210)
Q Consensus       179 ~~~  181 (210)
                      ...
T Consensus       156 ~~~  158 (200)
T smart00176      156 DPN  158 (200)
T ss_pred             ccc
Confidence            543

Ran is involved in the active transport of proteins through nuclear pores.

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=6.6e-31  Score=188.54  Aligned_cols=161  Identities=34%  Similarity=0.608  Sum_probs=138.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+++|..+.+...+. +.+. .....+.+++..+.+.+||+||+..+..++..+++.++++++||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIED-SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchh-eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            789999999999999999999888765544 4443 34556677888899999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEEEEccCCCCCHHHHHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l  172 (210)
                      |++++++++.... |...+.......+.|+++++||.|+...+....++...++..++ ++++++||+++.|++++|+++
T Consensus        81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i  159 (168)
T cd04177          81 SVTSEASLNELGE-LREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL  159 (168)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence            9999999999987 77777654455689999999999997777777777777888887 789999999999999999999


Q ss_pred             HHHHH
Q 028329          173 VLKIL  177 (210)
Q Consensus       173 ~~~~~  177 (210)
                      ...++
T Consensus       160 ~~~~~  164 (168)
T cd04177         160 VRQII  164 (168)
T ss_pred             HHHHh
Confidence            98664

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=4.7e-31  Score=192.99  Aligned_cols=158  Identities=23%  Similarity=0.404  Sum_probs=126.5

Q ss_pred             EEEEEEEcCCCCcHHHHHH-HHhcCCC-----CC-CCCCcee-eeEEEE--------EEECCeEEEEEEEeCCCcccccc
Q 028329           14 LFKLLMIGDSGVGKSSLLL-SFTSDNF-----EE-LSPTIGV-DFKVKY--------VDVGGKKLKLAIWDTAGQERFRT   77 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~-~l~~~~~-----~~-~~~~~~~-~~~~~~--------~~~~~~~~~~~l~D~~g~~~~~~   77 (210)
                      .+||+++|++|||||||+. ++.++.+     .. +.|+.+. +.+...        ..+++..+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 6655433     22 2345432 222211        25688899999999999865  2


Q ss_pred             chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC-------------------Ccee
Q 028329           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES-------------------ERVV  138 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-------------------~~~~  138 (210)
                      ....+++++|++++|||++++.||+.+...|...+....  .+.|+++|+||+|+..                   .+.+
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V  157 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL  157 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence            445678999999999999999999999866888887643  4789999999999863                   3677


Q ss_pred             cHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHH
Q 028329          139 TKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~  175 (210)
                      ..+++..+++.++++|++|||++|.|++++|..+++.
T Consensus       158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            8889999999999999999999999999999998864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=4e-31  Score=187.58  Aligned_cols=154  Identities=23%  Similarity=0.395  Sum_probs=128.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|++|||||||+.++..+.+...+++.+..+ ...+.+++..+.+.+||++|++.     ..+++.+|++++|||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d   74 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS   74 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence            489999999999999999999888866555433333 45678888889999999999864     245678999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC--CCceecHHHHHHHHHHh-CCcEEEEccCCCCCHHHHHHH
Q 028329           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE--SERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~  171 (210)
                      +++++||+++.. |+..+.......++|+++|+||.|+.  ..+.+..+++..+++.. ++.|++|||+++.||+++|.+
T Consensus        75 ~~~~~sf~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          75 LENEASFQTVYN-LYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            999999999988 77877765555679999999999984  35677778888888776 489999999999999999999


Q ss_pred             HHHH
Q 028329          172 LVLK  175 (210)
Q Consensus       172 l~~~  175 (210)
                      +.+.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            9864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=7.3e-31  Score=189.28  Aligned_cols=160  Identities=33%  Similarity=0.600  Sum_probs=135.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|++|+|||||+++|+.+.+...+.+.........+.+++..+.+.+||++|+..+...+..++..+|++++|||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            58999999999999999999998886555433333444467778888999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-cEEEEccCC
Q 028329           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIECSAKT  161 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~  161 (210)
                      ++++.+|+.+...|...+...  ..+.|+++|+||+|+...            ..+..+++..++...+. ++++|||++
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999987688888754  567999999999998532            24566778888888886 699999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028329          162 RVNVQQCFEELVLKI  176 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~  176 (210)
                      +.|++++|+.+++.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998876

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=7.8e-31  Score=186.74  Aligned_cols=159  Identities=40%  Similarity=0.690  Sum_probs=138.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+++|.+..+...+ ++.+.++....+..++..+.+.+||+||+..+...+..+++.+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999998876543 47777777777888888889999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  173 (210)
                      |+++++++..+.. |+..+.... ..+.|+++++||+|+........++...++...+++++++|++++.|++++|.++.
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~  158 (161)
T cd01861          81 DITNRQSFDNTDK-WIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIA  158 (161)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999987 777765533 23699999999999976666777777888888889999999999999999999998


Q ss_pred             HH
Q 028329          174 LK  175 (210)
Q Consensus       174 ~~  175 (210)
                      +.
T Consensus       159 ~~  160 (161)
T cd01861         159 SA  160 (161)
T ss_pred             Hh
Confidence            75

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01863 Rab18 Rab18 subfamily

Probab=99.98  E-value=1e-30  Score=186.19  Aligned_cols=159  Identities=72%  Similarity=1.105  Sum_probs=139.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+++|.+..+.. ..++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            589999999999999999999888755 4457777777777778888899999999999999988999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  173 (210)
                      |++++.+++.+.. |+..+..+....+.|+++|+||+|+. ......++...++...+++++++|+++|.|+++++++++
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~  158 (161)
T cd01863          81 DVTRRDTFTNLET-WLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV  158 (161)
T ss_pred             ECCCHHHHHhHHH-HHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            9999999999888 88888877777789999999999986 334556677888888899999999999999999999988


Q ss_pred             HH
Q 028329          174 LK  175 (210)
Q Consensus       174 ~~  175 (210)
                      +.
T Consensus       159 ~~  160 (161)
T cd01863         159 EK  160 (161)
T ss_pred             Hh
Confidence            75

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.98  E-value=1e-30  Score=188.39  Aligned_cols=158  Identities=31%  Similarity=0.546  Sum_probs=135.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|++|+|||||++++..+.+...+.++..+.....+.+++..+.+.+||+||+..+...+..+++++|++++|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            58999999999999999999988887666644455555667788888999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-cEEEEccCC
Q 028329           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYGC-LFIECSAKT  161 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~~  161 (210)
                      ++++.+|+.+...|+..+...  ..++|+++|+||.|+..            .+.+..+++..++...+. .++++||++
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999876688777653  34689999999999853            345677788899988887 899999999


Q ss_pred             CCCHHHHHHHHHH
Q 028329          162 RVNVQQCFEELVL  174 (210)
Q Consensus       162 ~~~i~~~~~~l~~  174 (210)
                      +.|++++|+.++.
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.98  E-value=5.1e-31  Score=188.58  Aligned_cols=160  Identities=33%  Similarity=0.528  Sum_probs=133.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCcccc-ccchhhcccCccEEEEEE
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERF-RTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-~~~~~~~~~~~d~~i~v~   93 (210)
                      ||+++|++|||||||+++++.+.+...++ +.. ......+.+++..+.+.+||+||+..+ ......+++.+|++++||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLE-SLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChH-HhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            68999999999999999999887765444 433 233455677888899999999998753 345667788999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCC-CHHHHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV-NVQQCFEE  171 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~-~i~~~~~~  171 (210)
                      |++++++|+.+.. |...+..... ..++|+++|+||+|+...+.+..+++..++...+.+++++||+++. |++++|.+
T Consensus        80 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~  158 (165)
T cd04146          80 SITDRSSFDEISQ-LKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHE  158 (165)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHH
Confidence            9999999999988 7777776543 4579999999999997777777888888898889999999999995 99999999


Q ss_pred             HHHHHH
Q 028329          172 LVLKIL  177 (210)
Q Consensus       172 l~~~~~  177 (210)
                      +.+.+.
T Consensus       159 l~~~~~  164 (165)
T cd04146         159 LCREVR  164 (165)
T ss_pred             HHHHHh
Confidence            998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01862 Rab7 Rab7 subfamily

Probab=99.98  E-value=2e-30  Score=186.54  Aligned_cols=165  Identities=39%  Similarity=0.696  Sum_probs=139.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+++|.+..+..... +.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++|++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            589999999999999999999888765443 6676777777788888899999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEEEEccCCCCCHHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYST---NQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~---~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~  169 (210)
                      |++++.+++.... |...+.....   ..++|+++|+||+|+..+.....++...+....+ .+++++|+++|.|++++|
T Consensus        81 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  159 (172)
T cd01862          81 DVTNPKSFESLDS-WRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF  159 (172)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence            9999999988876 6665544332   3378999999999997666666777777777777 789999999999999999


Q ss_pred             HHHHHHHHcCC
Q 028329          170 EELVLKILDTP  180 (210)
Q Consensus       170 ~~l~~~~~~~~  180 (210)
                      +++.+.+++..
T Consensus       160 ~~i~~~~~~~~  170 (172)
T cd01862         160 ETIARKALEQE  170 (172)
T ss_pred             HHHHHHHHhcc
Confidence            99999887763

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04148 RGK RGK subfamily

Probab=99.98  E-value=1.5e-30  Score=194.16  Aligned_cols=165  Identities=31%  Similarity=0.409  Sum_probs=137.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhccc-CccEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR-GAQGIIM   91 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-~~d~~i~   91 (210)
                      +||+++|++|||||||+++|..+.+. ..++ +.+.++....+.+++....+.+||++|.+.  .....++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999888775 4444 444466677778888899999999999872  23344556 8999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  171 (210)
                      |||++++.+|+.+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|++
T Consensus        79 V~d~td~~S~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~  157 (221)
T cd04148          79 VYSVTDRSSFERASE-LRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEG  157 (221)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            999999999999988 7777766544567999999999999877778888888888888899999999999999999999


Q ss_pred             HHHHHHcCCCc
Q 028329          172 LVLKILDTPSL  182 (210)
Q Consensus       172 l~~~~~~~~~~  182 (210)
                      +.+.+......
T Consensus       158 l~~~~~~~~~~  168 (221)
T cd04148         158 IVRQIRLRRDS  168 (221)
T ss_pred             HHHHHHhhhcc
Confidence            99999754444

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04123 Rab21 Rab21 subfamily

Probab=99.98  E-value=2.2e-30  Score=184.42  Aligned_cols=160  Identities=41%  Similarity=0.741  Sum_probs=137.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|+|||||+++|+.+.+...+. +...+.....+...+..+.+.+||++|+..+...+..++.++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            589999999999999999999888765443 5555555566667778889999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  173 (210)
                      |+++.++++.+.. |...+...... ++|+++++||+|+.....+..+++..++...+.+++++|++++.|++++|+++.
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~-~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~  158 (162)
T cd04123          81 DITDADSFQKVKK-WIKELKQMRGN-NISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLA  158 (162)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhCCC-CCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999887 87777765433 799999999999987666777777888888899999999999999999999998


Q ss_pred             HHH
Q 028329          174 LKI  176 (210)
Q Consensus       174 ~~~  176 (210)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04123         159 KRM  161 (162)
T ss_pred             HHh
Confidence            865

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.98  E-value=2.3e-30  Score=184.92  Aligned_cols=159  Identities=33%  Similarity=0.523  Sum_probs=133.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC--CCCCCC-CCceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD--NFEELS-PTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~--~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      +||+++|++|||||||+++|..+  .+...+ ++.+.++....+.+. +..+.+.+||++|...+..++..++..+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  454444 477777766666664 56799999999999998888999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      +|||+++++++..+.. |+..+....  .++|+++|+||.|+.....+...+...+....+++++++||+++.|++++|+
T Consensus        81 ~v~d~~~~~s~~~~~~-~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  157 (164)
T cd04101          81 LVYDVSNKASFENCSR-WVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFE  157 (164)
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHH
Confidence            9999999999998877 877776542  5689999999999976666666666677777788999999999999999999


Q ss_pred             HHHHHH
Q 028329          171 ELVLKI  176 (210)
Q Consensus       171 ~l~~~~  176 (210)
                      ++.+.+
T Consensus       158 ~l~~~~  163 (164)
T cd04101         158 SLARAF  163 (164)
T ss_pred             HHHHHh
Confidence            998865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01892 Miro2 Miro2 subfamily

Probab=99.97  E-value=2.4e-30  Score=185.72  Aligned_cols=163  Identities=22%  Similarity=0.285  Sum_probs=135.0

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCC-CCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ...+||+++|++|||||||+++|+++.+. ..+ ++.+.++....+.+++....+.+||++|...+...+..++..+|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            35799999999999999999999999886 444 4777777666677888888999999999999988888889999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCCCHHHH
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQQC  168 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~  168 (210)
                      ++|||++++.+++.+.. |...+..   ..++|+++|+||.|+.........+...++..+++ .++++||+++.|++++
T Consensus        82 llv~d~~~~~s~~~~~~-~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  157 (169)
T cd01892          82 CLVYDSSDPKSFSYCAE-VYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNEL  157 (169)
T ss_pred             EEEEeCCCHHHHHHHHH-HHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHH
Confidence            99999999999998877 6665432   24689999999999965544433445666777777 4799999999999999


Q ss_pred             HHHHHHHHHc
Q 028329          169 FEELVLKILD  178 (210)
Q Consensus       169 ~~~l~~~~~~  178 (210)
                      |+.+.+.+..
T Consensus       158 f~~l~~~~~~  167 (169)
T cd01892         158 FTKLATAAQY  167 (169)
T ss_pred             HHHHHHHhhC
Confidence            9999998763

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.97  E-value=2.1e-30  Score=195.75  Aligned_cols=160  Identities=26%  Similarity=0.444  Sum_probs=134.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+++|+.+.+...+. +.+ ++....+.+++..+.+.|||++|+..+...+..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            589999999999999999999988876554 443 555666788888999999999999988888888889999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhc--------cCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-hCCcEEEEccCCCCC
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYS--------TNQDCIKLLVGNKVDKESERVVTKKEGINFARE-YGCLFIECSAKTRVN  164 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~--------~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~  164 (210)
                      |+++.++|+.+.. |...+....        ...++|++||+||+|+...+.+..+++..++.. .++.++++||+++.|
T Consensus        80 dv~~~~Sf~~i~~-~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~g  158 (247)
T cd04143          80 SLDNRESFEEVCR-LREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSN  158 (247)
T ss_pred             eCCCHHHHHHHHH-HHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCC
Confidence            9999999999987 666665431        235789999999999976666777777776654 367899999999999


Q ss_pred             HHHHHHHHHHHH
Q 028329          165 VQQCFEELVLKI  176 (210)
Q Consensus       165 i~~~~~~l~~~~  176 (210)
                      ++++|.+|....
T Consensus       159 I~elf~~L~~~~  170 (247)
T cd04143         159 LDEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999865

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=4.3e-30  Score=183.31  Aligned_cols=163  Identities=37%  Similarity=0.603  Sum_probs=136.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|++|||||||+++++...+...+..............++..+.+.+||+||+..+...+..+++.+|++++|+|
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            58999999999999999999988876544422223344556778888999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHH
Q 028329           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVL  174 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~  174 (210)
                      ++++.++..+.. |...+.......++|+++|+||+|+.........+...+...++++++++||+++.|++++|.++.+
T Consensus        81 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          81 ITDMESFTATAE-FREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            999999999988 5555555444567999999999999765555666677788888899999999999999999999998


Q ss_pred             HHHc
Q 028329          175 KILD  178 (210)
Q Consensus       175 ~~~~  178 (210)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04139         160 EIRQ  163 (164)
T ss_pred             HHHh
Confidence            8753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.7e-30  Score=172.70  Aligned_cols=169  Identities=51%  Similarity=0.827  Sum_probs=155.4

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      .+.+|.+++|+-|+|||+|++.+...+|...-| +.+.++....+.+.+..+++++||++|++.++...+.+++++.+.+
T Consensus         9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal   88 (215)
T KOG0097|consen    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   88 (215)
T ss_pred             hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence            467999999999999999999999999877777 9999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      +|||++...++..+.. |+...+. ...++..+++++||.|++..+.+..++++.++.+.|..++++|+++|.++++.|-
T Consensus        89 mvyditrrstynhlss-wl~dar~-ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl  166 (215)
T KOG0097|consen   89 MVYDITRRSTYNHLSS-WLTDARN-LTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL  166 (215)
T ss_pred             EEEEehhhhhhhhHHH-HHhhhhc-cCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence            9999999999999988 8877765 4567788899999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHcCCCc
Q 028329          171 ELVLKILDTPSL  182 (210)
Q Consensus       171 ~l~~~~~~~~~~  182 (210)
                      .....+.++-+.
T Consensus       167 e~akkiyqniqd  178 (215)
T KOG0097|consen  167 ETAKKIYQNIQD  178 (215)
T ss_pred             HHHHHHHHhhhc
Confidence            888888776554

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=4.2e-30  Score=189.04  Aligned_cols=168  Identities=29%  Similarity=0.444  Sum_probs=135.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   95 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (210)
                      ||+++|++|||||||+++|+.+.+...+...........+.+.+..+.+.+||++|+..+..++..++..+|++++|||+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            68999999999999999999988876554222245555677788889999999999999888888899999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC-CceecHHHHHHHHH-HhCCcEEEEccCCCCCHHHHHHHHH
Q 028329           96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES-ERVVTKKEGINFAR-EYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~~~~~~l~  173 (210)
                      +++.+++.+.. |...+.......++|++||+||+|+.. .+.+..++...... ..+++++++||++|.|++++|+++.
T Consensus        81 ~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          81 DDPESFEEVER-LREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            99999999987 766666555556799999999999865 34455544444443 4467899999999999999999999


Q ss_pred             HHHHcCCCccc
Q 028329          174 LKILDTPSLLA  184 (210)
Q Consensus       174 ~~~~~~~~~~~  184 (210)
                      +.+.......+
T Consensus       160 ~~~~~~~~~~~  170 (198)
T cd04147         160 RQANLPYNLSP  170 (198)
T ss_pred             HHhhcccccch
Confidence            98865544444

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=3.1e-29  Score=182.85  Aligned_cols=163  Identities=35%  Similarity=0.530  Sum_probs=133.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      .||+++|++|+|||||++++..+.+...+. +.... ....+.+++..+.+.+||++|+..+.......+..+|+++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFEN-YVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccce-EEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            589999999999999999999777755443 33333 3345667788889999999999888777777788999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC----------CceecHHHHHHHHHHhCC-cEEEEccCCC
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES----------ERVVTKKEGINFAREYGC-LFIECSAKTR  162 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~sa~~~  162 (210)
                      |+++.+++..+...|...+...  ..++|+++|+||.|+..          .+.+..+++..++...+. ++++|||++|
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  158 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG  158 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence            9999999999986688888754  34699999999999843          234455677888888885 7999999999


Q ss_pred             CCHHHHHHHHHHHHHcCC
Q 028329          163 VNVQQCFEELVLKILDTP  180 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~~~~  180 (210)
                      .|++++|+++.+.++..+
T Consensus       159 ~~v~~~f~~l~~~~~~~~  176 (187)
T cd04129         159 EGVDDVFEAATRAALLVR  176 (187)
T ss_pred             CCHHHHHHHHHHHHhccc
Confidence            999999999998886655

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04114 Rab30 Rab30 subfamily

Probab=99.97  E-value=4e-29  Score=179.33  Aligned_cols=163  Identities=44%  Similarity=0.816  Sum_probs=138.7

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...++|+++|++|||||||++++..+.+... .++.+.++....+.+++..+.+.+||++|+..+...+..++..+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            4679999999999999999999997776543 346666676777788888899999999999999988889999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      +|||+++..+++.+.. |+..+.... ..++|+++|+||+|+...+.+..+....+......+++++|+++|.|++++|+
T Consensus        85 ~v~d~~~~~s~~~~~~-~~~~l~~~~-~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  162 (169)
T cd04114          85 LTYDITCEESFRCLPE-WLREIEQYA-NNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFL  162 (169)
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHH
Confidence            9999999999998877 887776543 34689999999999977776666666777776778899999999999999999


Q ss_pred             HHHHHH
Q 028329          171 ELVLKI  176 (210)
Q Consensus       171 ~l~~~~  176 (210)
                      ++.+.+
T Consensus       163 ~i~~~~  168 (169)
T cd04114         163 DLACRL  168 (169)
T ss_pred             HHHHHh
Confidence            998765

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=7.9e-30  Score=183.11  Aligned_cols=160  Identities=24%  Similarity=0.437  Sum_probs=125.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   95 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (210)
                      ||+++|+++||||||+++|.+..+..+.++.+....  .+.  ...+.+.+||+||+..+...+..+++++|++++|+|+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~--~~~--~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   76 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE--TVE--YKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS   76 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEE--EEE--ECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence            689999999999999999998877655556554443  222  3467899999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC------CcEEEEccCCCCCHHHHH
Q 028329           96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG------CLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~sa~~~~~i~~~~  169 (210)
                      ++++++..+.. |+..+.......+.|++||+||+|+...  ...+++..++...+      +.++++||++|.|++++|
T Consensus        77 s~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          77 SHRDRVSEAHS-ELAKLLTEKELRDALLLIFANKQDVAGA--LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CcHHHHHHHHH-HHHHHhcChhhCCCCEEEEEeCcCcccC--CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            99999999988 4444433222345899999999998643  45555555553221      258899999999999999


Q ss_pred             HHHHHHHHcCCCc
Q 028329          170 EELVLKILDTPSL  182 (210)
Q Consensus       170 ~~l~~~~~~~~~~  182 (210)
                      +||.+.+.+..++
T Consensus       154 ~~l~~~~~~~~~~  166 (169)
T cd04158         154 DWLSRQLVAAGVL  166 (169)
T ss_pred             HHHHHHHhhcccc
Confidence            9999988877654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=2.7e-29  Score=181.27  Aligned_cols=159  Identities=34%  Similarity=0.631  Sum_probs=131.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      .||+++|++|||||||+++|..+.+...+. +.+..+ ...+.+++..+.+.+||++|++.+...+...+.++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            689999999999999999999988876554 444333 345677888899999999999999888888899999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-cEEEEccC
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIECSAK  160 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~  160 (210)
                      |+++.++++.+...|...+...  ..+.|+++|+||.|+...            ..+...++..++...+. ++++|||+
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  158 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK  158 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence            9999999999977688877653  347899999999998542            22345667777777765 79999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028329          161 TRVNVQQCFEELVLKI  176 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~  176 (210)
                      +|.|++++|+++.+.+
T Consensus       159 ~~~~v~~lf~~l~~~~  174 (175)
T cd01870         159 TKEGVREVFEMATRAA  174 (175)
T ss_pred             cCcCHHHHHHHHHHHh
Confidence            9999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=4.3e-30  Score=186.71  Aligned_cols=167  Identities=25%  Similarity=0.370  Sum_probs=131.1

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||++++..+.+....++.+.+.....+.. ++..+.+.+||++|.+.+...+..+++++|++++|
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   82 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFV   82 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEE
Confidence            58999999999999999999998888766666666665555544 44678999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH--Hh----CCcEEEEccCCCCCHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR--EY----GCLFIECSAKTRVNVQ  166 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~--~~----~~~~~~~sa~~~~~i~  166 (210)
                      +|+++..++..+.. |+..+.......+.|++||+||+|+...  ...++...+..  ..    .++++++||+++.|++
T Consensus        83 ~D~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  159 (183)
T cd04152          83 VDSVDVERMEEAKT-ELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ  159 (183)
T ss_pred             EECCCHHHHHHHHH-HHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence            99999988888877 6655554444567999999999998642  23333333332  11    2458899999999999


Q ss_pred             HHHHHHHHHHHcCCCcc
Q 028329          167 QCFEELVLKILDTPSLL  183 (210)
Q Consensus       167 ~~~~~l~~~~~~~~~~~  183 (210)
                      ++|++|.+.+.+.++-.
T Consensus       160 ~l~~~l~~~l~~~~~~~  176 (183)
T cd04152         160 EGLEKLYEMILKRRKML  176 (183)
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            99999999997655443

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=5.5e-30  Score=183.68  Aligned_cols=155  Identities=24%  Similarity=0.361  Sum_probs=122.2

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      ..+||+++|++|||||||+++|..+.+....++.+.++..  +.  ...+.+.+||++|+..++..+..++..+|++++|
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v   83 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET--VT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   83 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEE--EE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            3589999999999999999999987776655666655432  22  2468899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-----hCCcEEEEccCCCCCHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-----YGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~  167 (210)
                      ||++++.++.+...+|...+.. ....++|++||+||+|+...  ...+++..+...     ....++++||++|.|+++
T Consensus        84 ~D~t~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~  160 (168)
T cd04149          84 VDSADRDRIDEARQELHRIIND-REMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  160 (168)
T ss_pred             EeCCchhhHHHHHHHHHHHhcC-HhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence            9999999999998855555543 22346899999999998642  344555554421     224689999999999999


Q ss_pred             HHHHHHH
Q 028329          168 CFEELVL  174 (210)
Q Consensus       168 ~~~~l~~  174 (210)
                      +|+||.+
T Consensus       161 ~~~~l~~  167 (168)
T cd04149         161 GLTWLSS  167 (168)
T ss_pred             HHHHHhc
Confidence            9999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.2e-29  Score=183.95  Aligned_cols=161  Identities=22%  Similarity=0.370  Sum_probs=123.5

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      +..+||+++|+++||||||++++..+.+....|+.+.+..  .+.  ...+.+.+||+||++.++.+|..+++++|++|+
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~--~~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4568999999999999999999998777665567665543  233  345789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-----CcEEEEccCCCCCHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-----CLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~  166 (210)
                      |||+++++++......+...+.. ....++|++|++||+|++...  ..++.........     +.++++||++|.|++
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~-~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcC-HhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            99999999999888745444432 223578999999999986543  2233222221111     235689999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028329          167 QCFEELVLKILDT  179 (210)
Q Consensus       167 ~~~~~l~~~~~~~  179 (210)
                      ++|+||.+.+.++
T Consensus       168 e~~~~l~~~~~~~  180 (181)
T PLN00223        168 EGLDWLSNNIANK  180 (181)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999887654

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=3.7e-29  Score=181.40  Aligned_cols=165  Identities=35%  Similarity=0.549  Sum_probs=136.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      .||+++|++|||||||++++....+...+. +....+ ...+..++..+.+.+||+||+..+...+..++..+|+++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            689999999999999999999888765443 333222 344566777889999999999999989999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  173 (210)
                      |.++..+++.+..+|...+. .....+.|+++|+||+|+...+.+..++...++..++.+++++||+++.|+.++|.++.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~-~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  159 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILD-MLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI  159 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999885554444 34456789999999999976666666667777777888999999999999999999999


Q ss_pred             HHHHcCCC
Q 028329          174 LKILDTPS  181 (210)
Q Consensus       174 ~~~~~~~~  181 (210)
                      +.+.+...
T Consensus       160 ~~~~~~~~  167 (180)
T cd04137         160 EEIEKVEN  167 (180)
T ss_pred             HHHHHhcC
Confidence            98876553

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd00154 Rab Rab family

Probab=99.97  E-value=3.3e-29  Score=177.39  Aligned_cols=157  Identities=55%  Similarity=0.940  Sum_probs=139.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|+++||||||++++.+..+... .++.+.++....+...+....+.+||+||...+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999988765 458888888888888888899999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  173 (210)
                      |+++++++..+.. |+..+.... ....|+++++||+|+........++...++...+.+++++|++++.|++++|++|.
T Consensus        81 d~~~~~~~~~~~~-~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDK-WLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            9999999999888 887776643 25689999999999975666777888888888899999999999999999999986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd00157 Rho Rho (Ras homology) family

Probab=99.97  E-value=3.8e-29  Score=179.73  Aligned_cols=158  Identities=34%  Similarity=0.603  Sum_probs=132.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|++|||||||+++|+++.+...+...............+..+.+.+||+||+..+.......++.+|++++|||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            58999999999999999999999885444433344455556778889999999999999888888888899999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc-----------eecHHHHHHHHHHhCC-cEEEEccCCC
Q 028329           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER-----------VVTKKEGINFAREYGC-LFIECSAKTR  162 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~sa~~~  162 (210)
                      .+++.++.....+|+..+..+.  .++|+++|+||+|+....           .+..+++..+....+. +++++|++++
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          81 VDSPSSFENVKTKWIPEIRHYC--PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            9999999998887888777643  379999999999986554           2356677888888887 8999999999


Q ss_pred             CCHHHHHHHHHH
Q 028329          163 VNVQQCFEELVL  174 (210)
Q Consensus       163 ~~i~~~~~~l~~  174 (210)
                      .|++++|+++.+
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd00876 Ras Ras family

Probab=99.97  E-value=4.1e-29  Score=177.48  Aligned_cols=159  Identities=38%  Similarity=0.627  Sum_probs=134.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   95 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (210)
                      ||+++|++|||||||++++++..+...+.....+.....+..++..+.+.+||+||+..+...+..++..+|++++|||.
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            68999999999999999999887655544222255556667777789999999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHH
Q 028329           96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~  175 (210)
                      ++++++..+.. |...+........+|+++|+||+|+...+....+++..++...+.+++++|++++.|++++|.+|.+.
T Consensus        81 ~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          81 TDRESFEEIKG-YREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            99999999988 55555544444679999999999998767778888888888888999999999999999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=6.2e-30  Score=184.60  Aligned_cols=158  Identities=22%  Similarity=0.370  Sum_probs=121.1

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...+||+++|++|||||||++++..+.+....|+.+..+..  +..  ..+.+.+||+||+..+...+..+++++|++|+
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            34699999999999999999999877776555566655432  233  45789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCCHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~  166 (210)
                      |||+++++++......|...+.. ....++|++||+||.|+....  ..+++.....     ...+.++++||++|.|++
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNE-DELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY  163 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhC-HhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence            99999999999988855554443 223568999999999986432  2222222211     112347789999999999


Q ss_pred             HHHHHHHHHH
Q 028329          167 QCFEELVLKI  176 (210)
Q Consensus       167 ~~~~~l~~~~  176 (210)
                      ++|+||.+.+
T Consensus       164 e~~~~l~~~~  173 (175)
T smart00177      164 EGLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHHh
Confidence            9999998775

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=4.7e-30  Score=182.48  Aligned_cols=153  Identities=22%  Similarity=0.395  Sum_probs=117.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|.++||||||++++..+.+....|+.+....  .+..  ..+.+.+||+||+..+...+..+++++|++++|||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D   76 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            4899999999999999999987777665566665443  2232  46889999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCCHHHHH
Q 028329           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~  169 (210)
                      +++..++.....+|...+.. ....+.|++|++||+|+....  ..++......     ...+.++++||++|.|++++|
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          77 SNDRERIGEAREELQRMLNE-DELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHhc-HHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            99999999998855555443 223468999999999986432  2222222111     123357899999999999999


Q ss_pred             HHHHH
Q 028329          170 EELVL  174 (210)
Q Consensus       170 ~~l~~  174 (210)
                      +||.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.97  E-value=1.6e-29  Score=180.36  Aligned_cols=168  Identities=32%  Similarity=0.566  Sum_probs=151.8

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...+|++++|+.++|||+|+-.+..+.|+..+.++-++-+...+.++ +..+.+.+|||+|++.|..++...+..+|+++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            35799999999999999999999999999888766667778888995 99999999999999999999888999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-cEEEE
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIEC  157 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  157 (210)
                      ++|++.+++||+++...|+..+..++  +++|+|+||+|.||...            ..+..+++..+++..|+ .|++|
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            99999999999999999999999875  78999999999999632            35677889999999995 69999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcCCC
Q 028329          158 SAKTRVNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       158 sa~~~~~i~~~~~~l~~~~~~~~~  181 (210)
                      ||+++.|++++|+..++..+...+
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhcccc
Confidence            999999999999999999987765

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.5e-29  Score=183.66  Aligned_cols=162  Identities=23%  Similarity=0.399  Sum_probs=123.7

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...+||+++|++|||||||++++..+.+....++.+.++..  +.  ...+.+.+||++|++.++..+..+++.+|++|+
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~--~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVET--VE--YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEE--EE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            34589999999999999999999887776655666655432  22  245789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCCHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~  166 (210)
                      |||+++++++......+...+... ...++|++||+||.|++...  ..+++.....     ...+.++++||++|.|++
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~  167 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSED-ELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY  167 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCH-hhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence            999999999999887555554432 23468999999999986432  2222222111     112346789999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 028329          167 QCFEELVLKILDTP  180 (210)
Q Consensus       167 ~~~~~l~~~~~~~~  180 (210)
                      ++|+||.+.+.+..
T Consensus       168 e~~~~l~~~i~~~~  181 (182)
T PTZ00133        168 EGLDWLSANIKKSM  181 (182)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999886653

>cd01893 Miro1 Miro1 subfamily

Probab=99.97  E-value=1.2e-28  Score=176.47  Aligned_cols=161  Identities=30%  Similarity=0.431  Sum_probs=126.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|++|||||||+++|..+.+...+++....+ .....+.+..+.+.+||++|...+...+...+..+|++++|||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS   79 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence            489999999999999999999998866555332222 2334556778899999999998887777788899999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHHHhC--CcEEEEccCCCCCHHHHHH
Q 028329           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGINFAREYG--CLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~  170 (210)
                      ++++.+++.+...|...++...  .+.|+++|+||+|+.+....  ..++...+.....  .+++++||+++.|++++|.
T Consensus        80 ~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          80 VDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            9999999998766888887643  47999999999999655432  1222333333332  3799999999999999999


Q ss_pred             HHHHHHHc
Q 028329          171 ELVLKILD  178 (210)
Q Consensus       171 ~l~~~~~~  178 (210)
                      .+...+..
T Consensus       158 ~~~~~~~~  165 (166)
T cd01893         158 YAQKAVLH  165 (166)
T ss_pred             HHHHHhcC
Confidence            99887754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04154 Arl2 Arl2 subfamily

Probab=99.97  E-value=4.3e-29  Score=179.95  Aligned_cols=158  Identities=22%  Similarity=0.338  Sum_probs=122.5

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      .....++|+++|++|||||||+++|.+..+....++.+...  ..+.++  .+.+.+||+||+..++..+..+++.+|++
T Consensus        10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   85 (173)
T cd04154          10 LKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL   85 (173)
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            34566999999999999999999999886655555665433  333443  47799999999999888999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCC
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVN  164 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~  164 (210)
                      ++|||++++.++.....++...+. .....++|++||+||+|+....  ..+++..+..     ..+++++++||++|.|
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  162 (173)
T cd04154          86 IWVVDSSDRLRLDDCKRELKELLQ-EERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEG  162 (173)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHh-ChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcC
Confidence            999999999999888773434433 2234579999999999986543  3344444442     2356799999999999


Q ss_pred             HHHHHHHHHH
Q 028329          165 VQQCFEELVL  174 (210)
Q Consensus       165 i~~~~~~l~~  174 (210)
                      ++++|+++..
T Consensus       163 i~~l~~~l~~  172 (173)
T cd04154         163 LLQGIDWLVD  172 (173)
T ss_pred             HHHHHHHHhc
Confidence            9999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=9.6e-29  Score=179.94  Aligned_cols=169  Identities=37%  Similarity=0.535  Sum_probs=151.7

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      ..+||+++|.+|+|||+|..++..+.|...+..+..+.+...+.+++..+.+.++|++|+.++..+...++.++|++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            35899999999999999999999999988776444477788899999999999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  172 (210)
                      |++++..||+.+.. ++..+.+......+|+++||||+|+...+.+..+++..++..++++|+|+||+.+.+++++|..|
T Consensus        82 ysitd~~SF~~~~~-l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   82 YSITDRSSFEEAKQ-LREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            99999999999999 55666554555678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCc
Q 028329          173 VLKILDTPSL  182 (210)
Q Consensus       173 ~~~~~~~~~~  182 (210)
                      .+.+...+..
T Consensus       161 ~r~~~~~~~~  170 (196)
T KOG0395|consen  161 VREIRLPREG  170 (196)
T ss_pred             HHHHHhhhcc
Confidence            9988764433

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=2.5e-30  Score=170.11  Aligned_cols=163  Identities=39%  Similarity=0.707  Sum_probs=148.5

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCCCCC--CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCC
Q 028329           19 MIGDSGVGKSSLLLSFTSDNFEELS--PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT   96 (210)
Q Consensus        19 v~G~~~~GKTtli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   96 (210)
                      ++|++++|||+|+-|+..+.|....  .+.+.++....+.+++..+++++|||+|++.+++....+++.+|+++++||+.
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            6899999999999999887775433  38889999999999999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329           97 RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus        97 ~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                      +..||++... |+..+..|... .+.+.+++||+|+..++.+..++.+.++..+++|+.++||++|.|++..|-.|.+.+
T Consensus        82 nkasfdn~~~-wlsei~ey~k~-~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l  159 (192)
T KOG0083|consen   82 NKASFDNCQA-WLSEIHEYAKE-AVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEEL  159 (192)
T ss_pred             cchhHHHHHH-HHHHHHHHHHh-hHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHH
Confidence            9999999999 99999988644 577889999999999999999999999999999999999999999999999999998


Q ss_pred             HcCCCcc
Q 028329          177 LDTPSLL  183 (210)
Q Consensus       177 ~~~~~~~  183 (210)
                      .+..-..
T Consensus       160 ~k~~~~~  166 (192)
T KOG0083|consen  160 KKLKMGA  166 (192)
T ss_pred             HHhccCC
Confidence            7765443

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.96  E-value=7.5e-29  Score=177.15  Aligned_cols=151  Identities=24%  Similarity=0.320  Sum_probs=118.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   95 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (210)
                      |+++|++|||||||+++|.++.+...+ |+.+...    ..+++..+.+.+||++|+..++..+..+++++|++++|||.
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            789999999999999999988765433 4555432    23445678899999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH----HHHHHHHHHhCCcEEEEccCC------CCCH
Q 028329           96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK----KEGINFAREYGCLFIECSAKT------RVNV  165 (210)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~sa~~------~~~i  165 (210)
                      +++.++..... |+..+...  ..++|+++|+||.|+...+....    .++..++...++.++++||++      ++|+
T Consensus        78 t~~~s~~~~~~-~l~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v  154 (164)
T cd04162          78 ADSERLPLARQ-ELHQLLQH--PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAV  154 (164)
T ss_pred             CCHHHHHHHHH-HHHHHHhC--CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHH
Confidence            99999988887 54544322  26799999999999976553321    123445555677899999988      9999


Q ss_pred             HHHHHHHHH
Q 028329          166 QQCFEELVL  174 (210)
Q Consensus       166 ~~~~~~l~~  174 (210)
                      +++|+.++.
T Consensus       155 ~~~~~~~~~  163 (164)
T cd04162         155 KDLLSQLIN  163 (164)
T ss_pred             HHHHHHHhc
Confidence            999998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=6.1e-27  Score=174.36  Aligned_cols=173  Identities=32%  Similarity=0.547  Sum_probs=142.5

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      ......+||+++|++|||||||++++..+.+.. +.++.+.++....+..++..+.+.+||++|+..+...+..++..++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            344556999999999999999998887777754 4458888887777777888999999999999998888888899999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  167 (210)
                      ++++|||+++..++..+.. |...+...  ..++|+++++||.|+.... ... +...++...++.++++|++++.|+++
T Consensus        84 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~--~~~~~i~lv~nK~Dl~~~~-~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~  158 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPN-WHRDIVRV--CENIPIVLVGNKVDVKDRQ-VKA-RQITFHRKKNLQYYDISAKSNYNFEK  158 (215)
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECccCcccc-CCH-HHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999987 77777654  2568999999999985432 222 23456677788999999999999999


Q ss_pred             HHHHHHHHHHcCCCccccc
Q 028329          168 CFEELVLKILDTPSLLAEG  186 (210)
Q Consensus       168 ~~~~l~~~~~~~~~~~~~~  186 (210)
                      .|.+|++.+......+--+
T Consensus       159 ~f~~ia~~l~~~p~~~~ld  177 (215)
T PTZ00132        159 PFLWLARRLTNDPNLVFVG  177 (215)
T ss_pred             HHHHHHHHHhhcccceecC
Confidence            9999999998877765443

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=8.8e-28  Score=173.25  Aligned_cols=155  Identities=23%  Similarity=0.392  Sum_probs=120.3

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      ..++|+++|++|||||||+++++.+.+....++.+.++..  +..  ....+.+||+||+..+...+..++..+|++++|
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEE--IVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEE--EEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            3589999999999999999999988887666666655432  333  357899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEEccCCCCCHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~  167 (210)
                      +|+++.+++......+...+.. ....++|+++++||+|+...  ...++.....     ...+++++++||+++.|+++
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~-~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAH-EDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhc-hhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            9999999988887745544443 22356899999999998642  2333322221     22345689999999999999


Q ss_pred             HHHHHHH
Q 028329          168 CFEELVL  174 (210)
Q Consensus       168 ~~~~l~~  174 (210)
                      +|++|.+
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=4e-27  Score=172.61  Aligned_cols=148  Identities=26%  Similarity=0.392  Sum_probs=121.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEEC-----CeEEEEEEEeCCCccccccchhhcccCccE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVG-----GKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      +||+++|+++||||||++++..+.+...+. +.+.++....+.+.     +..+.+.+||++|++.+..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999998866544 77777766666653     567899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhc------------------cCCCCcEEEEEeCCCCCCCceecHHH----HHHH
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYS------------------TNQDCIKLLVGNKVDKESERVVTKKE----GINF  146 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------------~~~~~piivv~nK~D~~~~~~~~~~~----~~~~  146 (210)
                      +|+|||+++.+||+++.. |+..+....                  ...++|++|||||.|+..++.+..+.    ...+
T Consensus        81 iIlVyDvtn~~Sf~~l~~-W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~i  159 (202)
T cd04102          81 IILVHDLTNRKSSQNLQR-WSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFV  159 (202)
T ss_pred             EEEEEECcChHHHHHHHH-HHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhH
Confidence            999999999999999987 888776532                  12468999999999997665444432    4456


Q ss_pred             HHHhCCcEEEEccCCCC
Q 028329          147 AREYGCLFIECSAKTRV  163 (210)
Q Consensus       147 ~~~~~~~~~~~sa~~~~  163 (210)
                      +...+++.++.++++..
T Consensus       160 a~~~~~~~i~~~c~~~~  176 (202)
T cd04102         160 AEQGNAEEINLNCTNGR  176 (202)
T ss_pred             HHhcCCceEEEecCCcc
Confidence            77789998888887654

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=1.3e-27  Score=172.26  Aligned_cols=159  Identities=29%  Similarity=0.439  Sum_probs=127.5

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ....++|+++|..|||||||+++|..+......||.+.+..  .+.+.  .+.+.+||++|+..+++.|..++.++|++|
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~--~i~~~--~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIE--EIKYK--GYSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEE--EEEET--TEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccc--eeeeC--cEEEEEEeccccccccccceeeccccceeE
Confidence            36789999999999999999999998776655566665544  34443  467899999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH------hCCcEEEEccCCCCC
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE------YGCLFIECSAKTRVN  164 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~~~~  164 (210)
                      ||+|.++.+.+.+....+...+.. ....++|++|++||+|++..  ...+++......      ..+.++.|||.+|.|
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~-~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLND-PELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTS-GGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred             EEEecccceeecccccchhhhcch-hhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence            999999999999998866666654 33457999999999998643  344444444332      234589999999999


Q ss_pred             HHHHHHHHHHHH
Q 028329          165 VQQCFEELVLKI  176 (210)
Q Consensus       165 i~~~~~~l~~~~  176 (210)
                      +.+.|+||.+.+
T Consensus       164 v~e~l~WL~~~~  175 (175)
T PF00025_consen  164 VDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC
Confidence            999999999865

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.96  E-value=8.9e-28  Score=170.85  Aligned_cols=153  Identities=24%  Similarity=0.388  Sum_probs=116.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   95 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (210)
                      +|+++|++|||||||+++|.+..+....++.+.+....  .. +....+.+||+||+..+...+..++..+|++++|+|+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~--~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~   77 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEML--QL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS   77 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEE--Ee-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            58999999999999999999988876666666544332  22 2457899999999999988898899999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH------HHhCCcEEEEccCCCCCHHHHH
Q 028329           96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA------REYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~sa~~~~~i~~~~  169 (210)
                      +++.++.....++...+.. ....+.|+++|+||+|++...  ...++....      ...++++++|||++|.|++++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          78 SDEARLDESQKELKHILKN-EHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CcHHHHHHHHHHHHHHHhc-hhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            9999888887744444433 223579999999999985421  222222211      1123468999999999999999


Q ss_pred             HHHHH
Q 028329          170 EELVL  174 (210)
Q Consensus       170 ~~l~~  174 (210)
                      .+|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd00879 Sar1 Sar1 subfamily

Probab=99.95  E-value=1.8e-27  Score=174.03  Aligned_cols=156  Identities=22%  Similarity=0.327  Sum_probs=121.1

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      +.++|+++|++|||||||+++|.++.+..+.++.+.+.  ..+.++  ...+.+||+||+..+...+..++..+|++++|
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV   93 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFL   93 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            46899999999999999999999887765555555433  334444  36789999999998888889999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH----------------hCCcEEE
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE----------------YGCLFIE  156 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~~  156 (210)
                      +|+++.+++.....++...+. .....+.|++|++||+|+..  .+..+++......                ...++++
T Consensus        94 ~D~~~~~s~~~~~~~~~~i~~-~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (190)
T cd00879          94 VDAADPERFQESKEELDSLLS-DEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFM  170 (190)
T ss_pred             EECCcHHHHHHHHHHHHHHHc-CccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEE
Confidence            999999998888774444443 23345699999999999864  3444555555432                1245899


Q ss_pred             EccCCCCCHHHHHHHHHHH
Q 028329          157 CSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       157 ~sa~~~~~i~~~~~~l~~~  175 (210)
                      |||+++.|++++|+||.+.
T Consensus       171 ~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         171 CSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             eEecCCCChHHHHHHHHhh
Confidence            9999999999999999865

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.95  E-value=6.9e-28  Score=172.68  Aligned_cols=154  Identities=22%  Similarity=0.353  Sum_probs=115.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   95 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (210)
                      +|+++|++|||||||+++|.+.....+.++.+.+.  ..+..  ..+.+.+||+||+..++..+..+++++|++++|||+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~   76 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS   76 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence            48999999999999999999763334445666543  23333  457899999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec----HHHHHHHHHHhC--CcEEEEccCCC------C
Q 028329           96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT----KKEGINFAREYG--CLFIECSAKTR------V  163 (210)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~----~~~~~~~~~~~~--~~~~~~sa~~~------~  163 (210)
                      ++..++..+.. |+..+.......++|+++|+||.|++..+...    ......++...+  +.+++|||++|      .
T Consensus        77 s~~~s~~~~~~-~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          77 SDDDRVQEVKE-ILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CchhHHHHHHH-HHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            99999999888 55555443334578999999999997654211    111122222222  45788999998      8


Q ss_pred             CHHHHHHHHHH
Q 028329          164 NVQQCFEELVL  174 (210)
Q Consensus       164 ~i~~~~~~l~~  174 (210)
                      |+.+.|+||..
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=8.8e-28  Score=170.63  Aligned_cols=152  Identities=24%  Similarity=0.342  Sum_probs=115.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   95 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (210)
                      ||+++|+++||||||+++|..+.+....++.+.+..  .+.  +....+.+||+||+..+...+..++..+|++++|+|+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~   76 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE--TVT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS   76 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence            689999999999999999988777655555555443  222  2457899999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCCHHHHHH
Q 028329           96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      +++.++......|...+... ...++|+++|+||+|+.+..  ...+......     ..+.+++++||+++.|++++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          77 TDRDRLGTAKEELHAMLEEE-ELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhch-hhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            99888877766455554432 23468999999999986443  1222211111     1124699999999999999999


Q ss_pred             HHHH
Q 028329          171 ELVL  174 (210)
Q Consensus       171 ~l~~  174 (210)
                      +|.+
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9865

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.95  E-value=2.5e-27  Score=161.10  Aligned_cols=165  Identities=20%  Similarity=0.336  Sum_probs=135.9

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      +..++.++|+++|..||||||++++|.+.......|+.+.......+    ..+.+.+||.+|+..+++.|..+|..+|+
T Consensus        11 k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdg   86 (185)
T KOG0073|consen   11 KLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDG   86 (185)
T ss_pred             HhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCe
Confidence            44567999999999999999999999998877777788866655444    56889999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc---eec-HHHHHHHHHHhCCcEEEEccCCCCC
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER---VVT-KKEGINFAREYGCLFIECSAKTRVN  164 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~---~~~-~~~~~~~~~~~~~~~~~~sa~~~~~  164 (210)
                      +|+|+|.+|+..+++....+...+.. ..-...|++|++||.|++..-   .+. .-+...+++...++++.||+.+|++
T Consensus        87 lIwvvDssD~~r~~e~~~~L~~lL~e-erlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~  165 (185)
T KOG0073|consen   87 LIWVVDSSDRMRMQECKQELTELLVE-ERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGED  165 (185)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhh-hhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEecccccc
Confidence            99999999999999988866666553 344568999999999997321   111 1123455567788999999999999


Q ss_pred             HHHHHHHHHHHHHc
Q 028329          165 VQQCFEELVLKILD  178 (210)
Q Consensus       165 i~~~~~~l~~~~~~  178 (210)
                      +.+-++|+...+.+
T Consensus       166 l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  166 LLEGIDWLCDDLMS  179 (185)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999887

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=1.7e-27  Score=169.03  Aligned_cols=152  Identities=24%  Similarity=0.408  Sum_probs=118.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   95 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (210)
                      ||+++|++|||||||++++++.......++.+.+....  .+  ....+.+||+||+..+...+..++..+|++++|||+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~--~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~   76 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETV--EY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS   76 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEE--EE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence            68999999999999999999888655555666554432  33  357899999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCCHHHHHH
Q 028329           96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      ++++++.....++...+. .....+.|+++++||+|+....  ..++......     ...++++++||++|.|++++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~-~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          77 SDRERIEEAKEELHKLLN-EEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCHHHHHHHHHHHHHHHh-CcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            999999998884444444 3345689999999999986543  2222333222     2345799999999999999999


Q ss_pred             HHHH
Q 028329          171 ELVL  174 (210)
Q Consensus       171 ~l~~  174 (210)
                      +|..
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04157 Arl6 Arl6 subfamily

Probab=99.95  E-value=2e-27  Score=169.33  Aligned_cols=152  Identities=20%  Similarity=0.313  Sum_probs=112.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC-C-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNF-E-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +|+++|++|||||||+++|.+..+ . ...++.+.+...  +.  ...+.+.+||+||+..+...+..++..+|++++|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 2 334466544332  22  34678999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhc--cCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCCHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYS--TNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~--~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~  166 (210)
                      |++++.++..... |+..+....  ...++|+++|+||+|+.....  ..+......     ....+++++||++|.|++
T Consensus        77 D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~  153 (162)
T cd04157          77 DSSDRLRLVVVKD-ELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLD  153 (162)
T ss_pred             eCCcHHHHHHHHH-HHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence            9999999888776 444443211  235799999999999864321  222222111     112358999999999999


Q ss_pred             HHHHHHHH
Q 028329          167 QCFEELVL  174 (210)
Q Consensus       167 ~~~~~l~~  174 (210)
                      ++|+||.+
T Consensus       154 ~~~~~l~~  161 (162)
T cd04157         154 EGVQWLQA  161 (162)
T ss_pred             HHHHHHhc
Confidence            99999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.95  E-value=2.3e-29  Score=173.50  Aligned_cols=180  Identities=28%  Similarity=0.476  Sum_probs=161.4

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      ..-+..||++++|..++||||+|+++|.+-|...+. +.+.++....+.+.+..+.+.+||++|++++.....++++++.
T Consensus        15 ~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaq   94 (246)
T KOG4252|consen   15 TDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQ   94 (246)
T ss_pred             hhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcccc
Confidence            444678999999999999999999999998877776 9999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  167 (210)
                      +.++||+.+|..||+.... |.+.+..  ....+|.++|-||+|+.+...+...+++.+++.+...++.+|++...|+..
T Consensus        95 a~vLVFSTTDr~SFea~~~-w~~kv~~--e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~  171 (246)
T KOG4252|consen   95 ASVLVFSTTDRYSFEATLE-WYNKVQK--ETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMH  171 (246)
T ss_pred             ceEEEEecccHHHHHHHHH-HHHHHHH--HhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHH
Confidence            9999999999999999999 7777764  346799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCc-ccccccCcc
Q 028329          168 CFEELVLKILDTPSL-LAEGSKGLK  191 (210)
Q Consensus       168 ~~~~l~~~~~~~~~~-~~~~~~~~~  191 (210)
                      +|.+|++.+.+...+ +.+...+..
T Consensus       172 vF~YLaeK~~q~~kq~~~~~~~~q~  196 (246)
T KOG4252|consen  172 VFAYLAEKLTQQKKQSLNANERKQS  196 (246)
T ss_pred             HHHHHHHHHHHHHHHHhhhchhhcc
Confidence            999999999877666 444444333

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=7.5e-27  Score=169.81  Aligned_cols=157  Identities=20%  Similarity=0.294  Sum_probs=119.6

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...++|+++|.+|||||||++++.++.+..+.++.+.+..  .+.+.  .+.+.+||+||+..+...+..++.++|++++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~   90 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSE--ELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVY   90 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            4559999999999999999999998877655455444332  23333  4778999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH------------hCCcEEEEcc
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE------------YGCLFIECSA  159 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~sa  159 (210)
                      |+|+++++++......+...+.. ....++|+++|+||+|++.  .+..+++......            ....+++|||
T Consensus        91 vvD~~~~~~~~~~~~~l~~l~~~-~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       91 LVDAYDKERFAESKRELDALLSD-EELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            99999999888887744444332 2335789999999999864  2344444433311            1234899999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 028329          160 KTRVNVQQCFEELVLK  175 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~  175 (210)
                      +++.|++++++||.+.
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=7.1e-27  Score=167.34  Aligned_cols=152  Identities=26%  Similarity=0.435  Sum_probs=112.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC-------CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFE-------ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      +|+++|++|||||||+++|.+....       ...++.+....  .+.++  ...+.+||+||+..+...+..++..+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            5899999999999999999864321       11223333332  23333  5789999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-------hCCcEEEEccCC
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-------YGCLFIECSAKT  161 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~sa~~  161 (210)
                      +++|+|+++++++..... |+..+.......++|+++++||+|++..  ....+...+...       .+++++++||++
T Consensus        77 ~v~vvd~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  153 (167)
T cd04160          77 IIYVIDSTDRERFEESKS-ALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALE  153 (167)
T ss_pred             EEEEEECchHHHHHHHHH-HHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCC
Confidence            999999999988888877 4444433333457999999999998653  233334444332       245799999999


Q ss_pred             CCCHHHHHHHHHH
Q 028329          162 RVNVQQCFEELVL  174 (210)
Q Consensus       162 ~~~i~~~~~~l~~  174 (210)
                      |.|++++++||.+
T Consensus       154 g~gv~e~~~~l~~  166 (167)
T cd04160         154 GTGVREGIEWLVE  166 (167)
T ss_pred             CcCHHHHHHHHhc
Confidence            9999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=7.4e-26  Score=162.99  Aligned_cols=143  Identities=39%  Similarity=0.633  Sum_probs=124.4

Q ss_pred             CCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhc
Q 028329           38 NFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS  116 (210)
Q Consensus        38 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  116 (210)
                      .|.+. .++.+.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++++|+.+.. |+..+....
T Consensus         4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~-w~~~i~~~~   82 (176)
T PTZ00099          4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK-WIQDILNER   82 (176)
T ss_pred             CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHH-HHHHHHHhc
Confidence            45444 4588888888888899999999999999999999999999999999999999999999999987 777765533


Q ss_pred             cCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028329          117 TNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       117 ~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~  182 (210)
                       ..++|++||+||+|+...+.+..+++..++..++..++++||++|.|++++|++|.+.+.+..+.
T Consensus        83 -~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~  147 (176)
T PTZ00099         83 -GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS  147 (176)
T ss_pred             -CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence             35789999999999977667788888888888888999999999999999999999999876655

>PLN00023 GTP-binding protein; Provisional

Probab=99.94  E-value=1.9e-25  Score=171.43  Aligned_cols=143  Identities=29%  Similarity=0.461  Sum_probs=118.9

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEEC-------------CeEEEEEEEeCCCccc
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVG-------------GKKLKLAIWDTAGQER   74 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-------------~~~~~~~l~D~~g~~~   74 (210)
                      .+....+||+++|+.|||||||+++|..+.+...+ ++.+.++....+.++             +..+.+.|||++|++.
T Consensus        16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr   95 (334)
T PLN00023         16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER   95 (334)
T ss_pred             CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence            44556799999999999999999999998886554 488887776666654             2568899999999999


Q ss_pred             cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhcc-----------CCCCcEEEEEeCCCCCCCc---e---
Q 028329           75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST-----------NQDCIKLLVGNKVDKESER---V---  137 (210)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----------~~~~piivv~nK~D~~~~~---~---  137 (210)
                      +..++..+++++|++|+|||+++..+++.+.. |+..+.....           ..++|++||+||+|+...+   .   
T Consensus        96 frsL~~~yyr~AdgiILVyDITdr~SFenL~k-Wl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~  174 (334)
T PLN00023         96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQK-WASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSG  174 (334)
T ss_pred             hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccc
Confidence            99999999999999999999999999999988 8888876432           1358999999999996543   2   


Q ss_pred             ecHHHHHHHHHHhCC
Q 028329          138 VTKKEGINFAREYGC  152 (210)
Q Consensus       138 ~~~~~~~~~~~~~~~  152 (210)
                      +..++++.++...++
T Consensus       175 ~~~e~a~~~A~~~g~  189 (334)
T PLN00023        175 NLVDAARQWVEKQGL  189 (334)
T ss_pred             ccHHHHHHHHHHcCC
Confidence            357889999998874

>cd04155 Arl3 Arl3 subfamily

Probab=99.94  E-value=3.1e-25  Score=159.73  Aligned_cols=158  Identities=21%  Similarity=0.322  Sum_probs=117.7

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      .....++|+++|++|||||||++++.+..+....++.+.+..  .+...  ...+.+||++|+..+...+..+++.+|++
T Consensus        10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~--~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~i   85 (173)
T cd04155          10 KSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIK--TVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCL   85 (173)
T ss_pred             ccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence            345579999999999999999999998876655556664443  33333  36789999999988888888889999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-----CcEEEEccCCCCC
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-----CLFIECSAKTRVN  164 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~  164 (210)
                      ++|+|+++..++.....++...+.. ....++|+++++||.|+.....  .++.........     .+++++||+++.|
T Consensus        86 i~v~D~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~g  162 (173)
T cd04155          86 IYVIDSADKKRLEEAGAELVELLEE-EKLAGVPVLVFANKQDLATAAP--AEEIAEALNLHDLRDRTWHIQACSAKTGEG  162 (173)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECCCCccCCC--HHHHHHHcCCcccCCCeEEEEEeECCCCCC
Confidence            9999999988888877744444443 3345799999999999864321  222222111111     2378999999999


Q ss_pred             HHHHHHHHHH
Q 028329          165 VQQCFEELVL  174 (210)
Q Consensus       165 i~~~~~~l~~  174 (210)
                      ++++|+||.+
T Consensus       163 i~~~~~~l~~  172 (173)
T cd04155         163 LQEGMNWVCK  172 (173)
T ss_pred             HHHHHHHHhc
Confidence            9999999865

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.93  E-value=6.2e-25  Score=157.40  Aligned_cols=155  Identities=17%  Similarity=0.108  Sum_probs=106.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc---------chhhcccCc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT---------LTSSYYRGA   86 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~~~~~~~~   86 (210)
                      +|+++|++|||||||+++|++..+.. .+.++.+..............+.+|||||......         ........+
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEV-APYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR   80 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCcc-CCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence            79999999999999999999877642 22222222222222333457899999999732110         011111236


Q ss_pred             cEEEEEEeCCCcccH--HHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCC
Q 028329           87 QGIIMVYDVTRRDTF--TNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVN  164 (210)
Q Consensus        87 d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  164 (210)
                      |++++|+|+++..++  +.... |+..+....  .+.|+++|+||+|+.....+..  ...+....+.+++++||+++.|
T Consensus        81 d~~l~v~d~~~~~~~~~~~~~~-~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897          81 AAVLFLFDPSETCGYSLEEQLS-LFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEG  155 (168)
T ss_pred             CcEEEEEeCCcccccchHHHHH-HHHHHHhhc--CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCC
Confidence            899999999987653  44444 666665422  4789999999999965443332  3444454567899999999999


Q ss_pred             HHHHHHHHHHHH
Q 028329          165 VQQCFEELVLKI  176 (210)
Q Consensus       165 i~~~~~~l~~~~  176 (210)
                      ++++|+++.+.+
T Consensus       156 i~~l~~~l~~~~  167 (168)
T cd01897         156 VDEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01890 LepA LepA subfamily

Probab=99.93  E-value=4e-25  Score=160.04  Aligned_cols=153  Identities=23%  Similarity=0.262  Sum_probs=111.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC-------CCCC-C------CceeeeEEEEEE--E---CCeEEEEEEEeCCCccccc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNF-------EELS-P------TIGVDFKVKYVD--V---GGKKLKLAIWDTAGQERFR   76 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~-------~~~~-~------~~~~~~~~~~~~--~---~~~~~~~~l~D~~g~~~~~   76 (210)
                      +|+++|++++|||||+++|++...       ...+ +      +.+.++......  +   ++..+.+.+|||||+..+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            689999999999999999986421       1111 1      123333333222  2   5678889999999999999


Q ss_pred             cchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC---c
Q 028329           77 TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC---L  153 (210)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~  153 (210)
                      ..+..++..+|++++|+|+++..++..... |....     ..++|+++|+||+|+....  .......+...+++   .
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~-~~~~~-----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~  153 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLAN-FYLAL-----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSE  153 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHH-HHHHH-----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCccc
Confidence            988889999999999999998877666554 43322     2468899999999986432  12222344555565   3


Q ss_pred             EEEEccCCCCCHHHHHHHHHHHH
Q 028329          154 FIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       154 ~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                      ++++||++|.|++++|+++.+.+
T Consensus       154 ~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         154 AILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EEEeeccCCCCHHHHHHHHHhhC
Confidence            89999999999999999998765

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.3e-25  Score=155.28  Aligned_cols=162  Identities=20%  Similarity=0.313  Sum_probs=133.8

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      .....+|+++|--++||||++++|..++.....||.|..+....+    ..+.+++||.+|+..++++|..++.+.+++|
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI   89 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGLI   89 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEEE
Confidence            456799999999999999999999999988888899977765555    3788999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCCH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNV  165 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i  165 (210)
                      ||+|.+|.+.+.+.+..+...+.. .+....|+++.+||.|++..-.  ..++.....     ...-.+..|+|.+|+|+
T Consensus        90 fVvDS~Dr~Ri~eak~eL~~~l~~-~~l~~~~llv~aNKqD~~~als--~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL  166 (181)
T KOG0070|consen   90 FVVDSSDRERIEEAKEELHRMLAE-PELRNAPLLVFANKQDLPGALS--AAEITNKLGLHSLRSRNWHIQSTCAISGEGL  166 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHcC-cccCCceEEEEechhhccccCC--HHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence            999999999999999877776665 3456899999999999875533  222222222     22334788999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 028329          166 QQCFEELVLKILDT  179 (210)
Q Consensus       166 ~~~~~~l~~~~~~~  179 (210)
                      .+.++|+...+..+
T Consensus       167 ~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  167 YEGLDWLSNNLKKR  180 (181)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999988653

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.93  E-value=4.1e-25  Score=156.40  Aligned_cols=151  Identities=25%  Similarity=0.408  Sum_probs=114.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   95 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (210)
                      |+++|++|||||||+++|.+..+...+. +.+..+.  .+...  .+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            7899999999999999999988765443 5554443  23333  37899999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEEccCCCCCHHHHHH
Q 028329           96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      ++..++......+...+.. ....++|+++|+||.|+......  .+.....     ....++++++|++++.|++++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  154 (159)
T cd04159          78 ADRTALEAAKNELHDLLEK-PSLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD  154 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence            9998888887744444432 33457899999999998654322  1111111     12235689999999999999999


Q ss_pred             HHHH
Q 028329          171 ELVL  174 (210)
Q Consensus       171 ~l~~  174 (210)
                      ++.+
T Consensus       155 ~l~~  158 (159)
T cd04159         155 WLIK  158 (159)
T ss_pred             HHhh
Confidence            9875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01898 Obg Obg subfamily

Probab=99.93  E-value=7.1e-25  Score=157.34  Aligned_cols=156  Identities=18%  Similarity=0.217  Sum_probs=106.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeE--EEEEEECCeEEEEEEEeCCCccc----cccchhhc---ccCc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFK--VKYVDVGGKKLKLAIWDTAGQER----FRTLTSSY---YRGA   86 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~---~~~~   86 (210)
                      +|+++|++|||||||+++|.+... .....++.+..  ...+...+ ...+.+|||||...    .......+   +..+
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~   79 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERT   79 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence            589999999999999999997553 11111122221  11122222 24799999999632    11222333   4469


Q ss_pred             cEEEEEEeCCCc-ccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-hCCcEEEEccCCCC
Q 028329           87 QGIIMVYDVTRR-DTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFARE-YGCLFIECSAKTRV  163 (210)
Q Consensus        87 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~  163 (210)
                      |++++|+|++++ +++..+.. |.+.+..... ....|+++|+||+|+....... .....+... .+.+++++|++++.
T Consensus        80 d~vi~v~D~~~~~~~~~~~~~-~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~  157 (170)
T cd01898          80 RLLLHVIDLSGDDDPVEDYKT-IRNELELYNPELLEKPRIVVLNKIDLLDEEELF-ELLKELLKELWGKPVFPISALTGE  157 (170)
T ss_pred             CEEEEEEecCCCCCHHHHHHH-HHHHHHHhCccccccccEEEEEchhcCCchhhH-HHHHHHHhhCCCCCEEEEecCCCC
Confidence            999999999999 78888776 7777665432 2468999999999986544432 233444444 36789999999999


Q ss_pred             CHHHHHHHHHHH
Q 028329          164 NVQQCFEELVLK  175 (210)
Q Consensus       164 ~i~~~~~~l~~~  175 (210)
                      |++++|+++.+.
T Consensus       158 gi~~l~~~i~~~  169 (170)
T cd01898         158 GLDELLRKLAEL  169 (170)
T ss_pred             CHHHHHHHHHhh
Confidence            999999998865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.93  E-value=1.7e-24  Score=169.71  Aligned_cols=165  Identities=17%  Similarity=0.134  Sum_probs=117.4

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECC-eEEEEEEEeCCCccc-------cccchhhcccC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGG-KKLKLAIWDTAGQER-------FRTLTSSYYRG   85 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~-------~~~~~~~~~~~   85 (210)
                      ...|.++|.||||||||+++|+.... ...+.+.+|.......+.. ....+.+||+||...       +...+...++.
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            35789999999999999999997653 2222223333322222211 334689999999632       22233345667


Q ss_pred             ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccC-CCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCC
Q 028329           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTN-QDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVN  164 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  164 (210)
                      ++++++|+|+++.++++.... |...+..+... .++|+++|+||+|+........+....++...+.+++++||+++.|
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~-~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~G  315 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKT-IRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEG  315 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHH-HHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCC
Confidence            999999999998888888877 88888765332 4689999999999975544443344445555668899999999999


Q ss_pred             HHHHHHHHHHHHHcCC
Q 028329          165 VQQCFEELVLKILDTP  180 (210)
Q Consensus       165 i~~~~~~l~~~~~~~~  180 (210)
                      +++++++|.+.+.+.+
T Consensus       316 I~eL~~~L~~~l~~~~  331 (335)
T PRK12299        316 LDELLRALWELLEEAR  331 (335)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999999886533

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.93  E-value=5.8e-24  Score=143.15  Aligned_cols=168  Identities=23%  Similarity=0.294  Sum_probs=141.6

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEEEE-EECCeEEEEEEEeCCCcccc-ccchhhcccCccE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVKYV-DVGGKKLKLAIWDTAGQERF-RTLTSSYYRGAQG   88 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~l~D~~g~~~~-~~~~~~~~~~~d~   88 (210)
                      ...||+++|..++|||+++..|..+......+  .+-.+++...+ +-.+..-.++|+||.|.... ..+-.+++.-+|+
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            56899999999999999999987666533333  22233444444 33555678999999997666 5677888999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  168 (210)
                      +++||+..+++||..+.. +...|.....+.++||+|++||+|+.+++.++.+.+..|++...+..+++++.+..++-+.
T Consensus        88 fVLVYs~~d~eSf~rv~l-lKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep  166 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRVEL-LKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP  166 (198)
T ss_pred             EEEEecCCCHHHHHHHHH-HHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence            999999999999999988 8888988888889999999999999989999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCC
Q 028329          169 FEELVLKILDTPS  181 (210)
Q Consensus       169 ~~~l~~~~~~~~~  181 (210)
                      |..+...+.+.++
T Consensus       167 f~~l~~rl~~pqs  179 (198)
T KOG3883|consen  167 FTYLASRLHQPQS  179 (198)
T ss_pred             HHHHHHhccCCcc
Confidence            9999998876554

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.93  E-value=9.7e-24  Score=149.02  Aligned_cols=157  Identities=28%  Similarity=0.446  Sum_probs=121.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|+|||||++++....+...+ ++.+.+.....+..++..+.+.+||+||+..+...+...+..+++++.++
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~   81 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF   81 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence            79999999999999999999988854433 35555665555667776688999999999999888888899999999999


Q ss_pred             eCCCc-ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329           94 DVTRR-DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        94 d~~~~-~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  172 (210)
                      |.... .++......|...+...... +.|+++++||.|+.... ........+......+++++||+++.|+.++|++|
T Consensus        82 d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        82 DIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            98877 67766664466666554433 78999999999996544 33333333334445679999999999999999986


Q ss_pred             H
Q 028329          173 V  173 (210)
Q Consensus       173 ~  173 (210)
                      .
T Consensus       160 ~  160 (161)
T TIGR00231       160 E  160 (161)
T ss_pred             h
Confidence            3

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK15494 era GTPase Era; Provisional

Probab=99.93  E-value=1.9e-24  Score=170.47  Aligned_cols=171  Identities=20%  Similarity=0.239  Sum_probs=119.9

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc-ccc-------hhhcc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF-RTL-------TSSYY   83 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-~~~-------~~~~~   83 (210)
                      .+.++|+++|++|||||||+++|.+..+....+.+++|.......+.....++.+|||||.... ..+       ....+
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l  129 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL  129 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence            3567999999999999999999999887655554444433222222223356899999997432 221       12246


Q ss_pred             cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcEEEEccCC
Q 028329           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG--CLFIECSAKT  161 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~  161 (210)
                      ..+|++++|+|..+  ++......|+..+..    .+.|.++|+||+|+...   ...+...++....  ..++++||++
T Consensus       130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~----~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAkt  200 (339)
T PRK15494        130 HSADLVLLIIDSLK--SFDDITHNILDKLRS----LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALS  200 (339)
T ss_pred             hhCCEEEEEEECCC--CCCHHHHHHHHHHHh----cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccC
Confidence            78999999999765  344444435555543    24567889999998643   2334555555443  4699999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCcccccccCcc
Q 028329          162 RVNVQQCFEELVLKILDTPSLLAEGSKGLK  191 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~  191 (210)
                      |.|++++|++|...+.+....++.+.....
T Consensus       201 g~gv~eL~~~L~~~l~~~~~~~~~~~~td~  230 (339)
T PRK15494        201 GKNIDGLLEYITSKAKISPWLYAEDDITDL  230 (339)
T ss_pred             ccCHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            999999999999999999888877665444

>TIGR00436 era GTP-binding protein Era

Probab=99.92  E-value=2.3e-24  Score=165.54  Aligned_cols=166  Identities=17%  Similarity=0.081  Sum_probs=116.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------chhhcccCcc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT--------LTSSYYRGAQ   87 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~d   87 (210)
                      +|+++|.+|||||||+|+|++.+....++.+++|.............++.+|||||......        .....+..+|
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD   81 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD   81 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence            68999999999999999999988765555444444332222222235689999999654221        1234578899


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCCCHH
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQ  166 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~  166 (210)
                      ++++|+|+++..+..   ..+...+..    .+.|+++|+||+|+...... ......+....+. +++++||++|.|++
T Consensus        82 vvl~VvD~~~~~~~~---~~i~~~l~~----~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~  153 (270)
T TIGR00436        82 LILFVVDSDQWNGDG---EFVLTKLQN----LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTS  153 (270)
T ss_pred             EEEEEEECCCCCchH---HHHHHHHHh----cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence            999999999877664   224444433    46899999999998643222 2233344444444 69999999999999


Q ss_pred             HHHHHHHHHHHcCCCcccccccC
Q 028329          167 QCFEELVLKILDTPSLLAEGSKG  189 (210)
Q Consensus       167 ~~~~~l~~~~~~~~~~~~~~~~~  189 (210)
                      ++++++.+.+......++.+...
T Consensus       154 ~L~~~l~~~l~~~~~~~~~~~~t  176 (270)
T TIGR00436       154 FLAAFIEVHLPEGPFRYPEDYVT  176 (270)
T ss_pred             HHHHHHHHhCCCCCCCCCCcccC
Confidence            99999999998877766655443

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.92  E-value=2.3e-24  Score=150.40  Aligned_cols=134  Identities=18%  Similarity=0.195  Sum_probs=98.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc-----ccccchhhcccCccEEE
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE-----RFRTLTSSYYRGAQGII   90 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----~~~~~~~~~~~~~d~~i   90 (210)
                      ||+++|++|||||||+++|.+..+. ..++.+.+       +.     -.+||+||..     .+..... .++++|+++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~-------~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi   67 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVE-------YN-----DGAIDTPGEYVENRRLYSALIV-TAADADVIA   67 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc-cccceeEE-------Ec-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence            8999999999999999999987652 22232221       11     1689999972     2333333 478999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCCCHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQQCF  169 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~  169 (210)
                      +|||++++.++... . |...+       ..|+++|+||+|+.+ +....+++..++...+. +++++||+++.|++++|
T Consensus        68 lv~d~~~~~s~~~~-~-~~~~~-------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  137 (142)
T TIGR02528        68 LVQSATDPESRFPP-G-FASIF-------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALV  137 (142)
T ss_pred             EEecCCCCCcCCCh-h-HHHhc-------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence            99999999987653 2 43322       238999999999864 23445566777777776 79999999999999999


Q ss_pred             HHHH
Q 028329          170 EELV  173 (210)
Q Consensus       170 ~~l~  173 (210)
                      +++.
T Consensus       138 ~~l~  141 (142)
T TIGR02528       138 DYLN  141 (142)
T ss_pred             HHHh
Confidence            9874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01878 HflX HflX subfamily

Probab=99.92  E-value=4.9e-24  Score=157.53  Aligned_cols=156  Identities=18%  Similarity=0.124  Sum_probs=109.4

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc---------ccchhh
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF---------RTLTSS   81 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~~~~~~   81 (210)
                      ...++|+++|++|||||||++++++..... ..+....+.....+.+.+. ..+.+||+||....         ...+ .
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            445899999999999999999999876422 2222222222333333332 37899999997321         1111 2


Q ss_pred             cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCC
Q 028329           82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT  161 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  161 (210)
                      .+..+|++++|+|++++.++..... |...+... ...++|+++|+||+|+.......     ........+++++||++
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~-~~~~l~~~-~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~  189 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIET-VEKVLKEL-GAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKT  189 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHH-HHHHHHHc-CcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCC
Confidence            3568999999999999988877655 66666543 23468999999999986543322     33445567899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028329          162 RVNVQQCFEELVLKI  176 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~  176 (210)
                      +.|+++++++|...+
T Consensus       190 ~~gi~~l~~~L~~~~  204 (204)
T cd01878         190 GEGLDELLEAIEELL  204 (204)
T ss_pred             CCCHHHHHHHHHhhC
Confidence            999999999997653

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=4.1e-23  Score=154.15  Aligned_cols=169  Identities=40%  Similarity=0.594  Sum_probs=134.5

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||+++|..+.+...++ +.+..+...........+.+.+||++|+..++..+..++.++++++++
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            3999999999999999999999999987776 556666666565555588999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce------------ecHHHHHHHHHHh---CCcEEEE
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV------------VTKKEGINFAREY---GCLFIEC  157 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~------------~~~~~~~~~~~~~---~~~~~~~  157 (210)
                      +|..+..++..+...|...+..... ...|+++++||+|+.....            .............   ...++++
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAP-DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET  163 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCC-CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence            9999977777777779988876432 4699999999999965532            2222222222222   2238999


Q ss_pred             ccC--CCCCHHHHHHHHHHHHHcCCCcc
Q 028329          158 SAK--TRVNVQQCFEELVLKILDTPSLL  183 (210)
Q Consensus       158 sa~--~~~~i~~~~~~l~~~~~~~~~~~  183 (210)
                      |++  .+.++.++|..+...+.+.....
T Consensus       164 s~~~~~~~~v~~~~~~~~~~~~~~~~~~  191 (219)
T COG1100         164 SAKSLTGPNVNELFKELLRKLLEEIEKL  191 (219)
T ss_pred             ecccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence            999  99999999999999997655444

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.2e-23  Score=139.57  Aligned_cols=158  Identities=23%  Similarity=0.363  Sum_probs=134.0

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      ..++|+.+|-.++||||++..|+.+......||.|+.+..+.+    ..+.+.+||.+|++..+++|..++.+..++|+|
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV   91 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   91 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence            4689999999999999999999998887777888877665544    578899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-----cEEEEccCCCCCHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-----LFIECSAKTRVNVQQ  167 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-----~~~~~sa~~~~~i~~  167 (210)
                      +|..+.+..++.++.+...+.. ..-.+.|++|.+||.|++..  ...+++..+.....+     -+.++++.++.++.+
T Consensus        92 ~Dsa~~dr~eeAr~ELh~ii~~-~em~~~~~LvlANkQDlp~A--~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e  168 (180)
T KOG0071|consen   92 VDSADRDRIEEARNELHRIIND-REMRDAIILILANKQDLPDA--MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE  168 (180)
T ss_pred             EeccchhhHHHHHHHHHHHhCC-HhhhcceEEEEecCcccccc--cCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence            9999999999999988888876 34557899999999998754  455666666554433     378899999999999


Q ss_pred             HHHHHHHHHH
Q 028329          168 CFEELVLKIL  177 (210)
Q Consensus       168 ~~~~l~~~~~  177 (210)
                      -|.|+.+.+.
T Consensus       169 glswlsnn~~  178 (180)
T KOG0071|consen  169 GLSWLSNNLK  178 (180)
T ss_pred             HHHHHHhhcc
Confidence            9999988763

>PRK04213 GTP-binding protein; Provisional

Probab=99.91  E-value=4.6e-24  Score=157.31  Aligned_cols=155  Identities=21%  Similarity=0.239  Sum_probs=104.1

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC-----------ccccccch
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG-----------QERFRTLT   79 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~   79 (210)
                      ....++|+++|++|||||||+++|++..+. ....++.++....+...    .+.+||+||           .+.++..+
T Consensus         6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            345689999999999999999999987754 33344555554444433    589999999           34455544


Q ss_pred             hhcc----cCccEEEEEEeCCCcccHHH---------HHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHH
Q 028329           80 SSYY----RGAQGIIMVYDVTRRDTFTN---------LSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINF  146 (210)
Q Consensus        80 ~~~~----~~~d~~i~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~  146 (210)
                      ..++    ..++++++|+|.+....+..         ....+...+.    ..++|+++|+||+|+....   .+....+
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~p~iiv~NK~Dl~~~~---~~~~~~~  153 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR----ELGIPPIVAVNKMDKIKNR---DEVLDEI  153 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH----HcCCCeEEEEECccccCcH---HHHHHHH
Confidence            4444    34578888998765322210         0011222222    2468999999999986443   2234444


Q ss_pred             HHHhCC---------cEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329          147 AREYGC---------LFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       147 ~~~~~~---------~~~~~sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      ...++.         +++++||++| |++++|++|.+.+.+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        154 AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            555554         4899999999 999999999988744

>cd04171 SelB SelB subfamily

Probab=99.91  E-value=1.2e-23  Score=149.86  Aligned_cols=153  Identities=19%  Similarity=0.167  Sum_probs=101.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC---CCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN---FEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      .|+++|++|||||||+++|++..   +... .+....+.....+.+.. ...+.+|||||+..+.......+..+|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            58999999999999999999643   2211 11222222223333331 4579999999998887766677889999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHH---hCCcEEEEccCCCCCHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGINFARE---YGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~sa~~~~~i~  166 (210)
                      |+|+++... ..... .+..+..   ....|+++++||+|+.....  ...++.......   .+.+++++||+++.|++
T Consensus        81 V~d~~~~~~-~~~~~-~~~~~~~---~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  155 (164)
T cd04171          81 VVAADEGIM-PQTRE-HLEILEL---LGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIE  155 (164)
T ss_pred             EEECCCCcc-HhHHH-HHHHHHH---hCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHH
Confidence            999987321 11111 1122222   11248999999999965421  122333444444   35789999999999999


Q ss_pred             HHHHHHHH
Q 028329          167 QCFEELVL  174 (210)
Q Consensus       167 ~~~~~l~~  174 (210)
                      ++|+.+..
T Consensus       156 ~l~~~l~~  163 (164)
T cd04171         156 ELKEYLDE  163 (164)
T ss_pred             HHHHHHhh
Confidence            99998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.91  E-value=4.4e-23  Score=144.42  Aligned_cols=154  Identities=50%  Similarity=0.791  Sum_probs=120.1

Q ss_pred             EEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCC
Q 028329           19 MIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR   97 (210)
Q Consensus        19 v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~   97 (210)
                      ++|++|+|||||++++++... .....+...+..............+.+||+||...+...+...+..+|++++|+|+++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   80 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD   80 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence            589999999999999998876 3333333366677777777778999999999988888888888899999999999999


Q ss_pred             cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHH-HHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329           98 RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKE-GINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        98 ~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  173 (210)
                      +.++..... |............+|+++++||.|+.......... ..........+++++|++++.|+.+++++|.
T Consensus        81 ~~~~~~~~~-~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          81 RESFENVKE-WLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             HHHHHHHHH-HHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            998888877 42222223446679999999999986554443332 3344445567899999999999999999975

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.91  E-value=4.2e-23  Score=145.98  Aligned_cols=147  Identities=23%  Similarity=0.200  Sum_probs=105.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhhcccCc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSSYYRGA   86 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~~~   86 (210)
                      ++|+++|++|+|||||++++++.......+.++++.......+......+.+||+||...+...        ....+..+
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~   81 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA   81 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence            5899999999999999999998775433333333322222222223457899999996554321        23456789


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  166 (210)
                      |++++|+|++++.+...... +..       ....|+++|+||+|+......       .....+.+++++||+++.|++
T Consensus        82 ~~~v~v~d~~~~~~~~~~~~-~~~-------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          82 DLVLFVIDASRGLDEEDLEI-LEL-------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             CEEEEEEECCCCCCHHHHHH-HHh-------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            99999999998877766544 222       346899999999998654433       234456789999999999999


Q ss_pred             HHHHHHHHHH
Q 028329          167 QCFEELVLKI  176 (210)
Q Consensus       167 ~~~~~l~~~~  176 (210)
                      +++++|.+.+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.91  E-value=1.2e-22  Score=145.44  Aligned_cols=156  Identities=18%  Similarity=0.123  Sum_probs=106.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      .|+++|++|+|||||+++|....+..... ....+.....+... +....+.+|||||+..+...+...+..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999887654422 22222222333332 23567899999999888888888889999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH-HHHHHHHH------HhCCcEEEEccCCCCCHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK-KEGINFAR------EYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~-~~~~~~~~------~~~~~~~~~sa~~~~~i~  166 (210)
                      |+++........  ....+.    ..++|+++|+||+|+........ .....+..      ...++++++|++++.|++
T Consensus        82 d~~~~~~~~~~~--~~~~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  155 (168)
T cd01887          82 AADDGVMPQTIE--AIKLAK----AANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID  155 (168)
T ss_pred             ECCCCccHHHHH--HHHHHH----HcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence            999854322221  122222    24689999999999864321111 11111111      113579999999999999


Q ss_pred             HHHHHHHHHHH
Q 028329          167 QCFEELVLKIL  177 (210)
Q Consensus       167 ~~~~~l~~~~~  177 (210)
                      +++++|.+...
T Consensus       156 ~l~~~l~~~~~  166 (168)
T cd01887         156 DLLEAILLLAE  166 (168)
T ss_pred             HHHHHHHHhhh
Confidence            99999987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.90  E-value=7.2e-24  Score=147.78  Aligned_cols=148  Identities=18%  Similarity=0.240  Sum_probs=100.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhcc--cCc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT------LTSSYY--RGA   86 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~--~~~   86 (210)
                      |+|+++|.||||||||+|+|++.. ......+|.|.......+......+.++|+||.-...+      ....++  ...
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~   79 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP   79 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence            689999999999999999999887 33344566666555443332336788889999433222      222333  579


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  166 (210)
                      |+++.|+|+++.+   .... +...+.    ..++|+++++||+|....+.+.. +...+.+.++++++.+||+++.|++
T Consensus        80 D~ii~VvDa~~l~---r~l~-l~~ql~----e~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~  150 (156)
T PF02421_consen   80 DLIIVVVDATNLE---RNLY-LTLQLL----ELGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGID  150 (156)
T ss_dssp             SEEEEEEEGGGHH---HHHH-HHHHHH----HTTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHH
T ss_pred             CEEEEECCCCCHH---HHHH-HHHHHH----HcCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHH
Confidence            9999999998743   3332 223332    24699999999999865544433 3566777889999999999999999


Q ss_pred             HHHHHH
Q 028329          167 QCFEEL  172 (210)
Q Consensus       167 ~~~~~l  172 (210)
                      ++++.|
T Consensus       151 ~L~~~I  156 (156)
T PF02421_consen  151 ELKDAI  156 (156)
T ss_dssp             HHHHHH
T ss_pred             HHHhhC
Confidence            998865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.90  E-value=4.6e-23  Score=139.52  Aligned_cols=114  Identities=33%  Similarity=0.620  Sum_probs=90.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC---CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFE---ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      ||+|+|++|||||||+++|++..+.   ...+..+.++.............+.+||++|.+.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999988876   2223455555555667777877899999999998888888889999999999


Q ss_pred             EeCCCcccHHHHHHH--HHHHHhhhccCCCCcEEEEEeCCC
Q 028329           93 YDVTRRDTFTNLSDV--WAKEIDLYSTNQDCIKLLVGNKVD  131 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~--~~~~~~~~~~~~~~piivv~nK~D  131 (210)
                      ||++++.+++.+..+  |+..+..  ...++|++||+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~--~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRK--RDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHH--HSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHc--cCCCCCEEEEEeccC
Confidence            999999999998663  4444443  245699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.90  E-value=1e-22  Score=144.26  Aligned_cols=147  Identities=16%  Similarity=0.202  Sum_probs=105.5

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhccc--CccEE
Q 028329           19 MIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT------LTSSYYR--GAQGI   89 (210)
Q Consensus        19 v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~~--~~d~~   89 (210)
                      ++|.+|+|||||++++++.... ..++..+.+.....+.+++  ..+.+|||||...+..      .+..++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            5899999999999999987632 2233333334444455554  5789999999876554      2444554  89999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  169 (210)
                      ++|+|+++.++..   . |...+..    .++|+++++||+|+.....+... ...+...++.+++++|++++.|+++++
T Consensus        79 i~v~d~~~~~~~~---~-~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~  149 (158)
T cd01879          79 VNVVDATNLERNL---Y-LTLQLLE----LGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELK  149 (158)
T ss_pred             EEEeeCCcchhHH---H-HHHHHHH----cCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHH
Confidence            9999998865432   2 3333322    36899999999999655444333 356666778999999999999999999


Q ss_pred             HHHHHHH
Q 028329          170 EELVLKI  176 (210)
Q Consensus       170 ~~l~~~~  176 (210)
                      .++.+.+
T Consensus       150 ~~l~~~~  156 (158)
T cd01879         150 DAIAELA  156 (158)
T ss_pred             HHHHHHh
Confidence            9998764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.90  E-value=3.6e-23  Score=149.17  Aligned_cols=155  Identities=23%  Similarity=0.257  Sum_probs=103.7

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc----cccc---hhhcccCccEEE
Q 028329           19 MIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER----FRTL---TSSYYRGAQGII   90 (210)
Q Consensus        19 v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~---~~~~~~~~d~~i   90 (210)
                      ++|++|||||||+++|.+.... ..++....+.....+.+. ....+.+||+||...    ....   ....+..+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            5899999999999999987641 122211111222223333 145689999999632    1222   233467899999


Q ss_pred             EEEeCCCc------ccHHHHHHHHHHHHhhhccC------CCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEc
Q 028329           91 MVYDVTRR------DTFTNLSDVWAKEIDLYSTN------QDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECS  158 (210)
Q Consensus        91 ~v~d~~~~------~s~~~~~~~~~~~~~~~~~~------~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (210)
                      +|+|+.+.      .++..... |...+......      .+.|+++|+||+|+..................+..++++|
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEI-LNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS  158 (176)
T ss_pred             EEEeccCCccccccCHHHHHHH-HHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence            99999988      46666655 55555543221      4689999999999965544333322333444567799999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q 028329          159 AKTRVNVQQCFEELVLK  175 (210)
Q Consensus       159 a~~~~~i~~~~~~l~~~  175 (210)
                      ++++.|++++++++.+.
T Consensus       159 a~~~~gl~~l~~~l~~~  175 (176)
T cd01881         159 AKTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhhcCHHHHHHHHHhh
Confidence            99999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.90  E-value=1.5e-22  Score=158.65  Aligned_cols=160  Identities=17%  Similarity=0.133  Sum_probs=110.9

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc-------ccchhhcccC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF-------RTLTSSYYRG   85 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~   85 (210)
                      ...|+++|.||||||||+++|+..... ..++.+......-.+.+++ ...+.+||+||....       ...+...+..
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            467999999999999999999976532 2223111222222233332 367899999996421       1222334567


Q ss_pred             ccEEEEEEeCCCc---ccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCC
Q 028329           86 AQGIIMVYDVTRR---DTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT  161 (210)
Q Consensus        86 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  161 (210)
                      +|++++|+|+++.   ++++.+.. |...+..+.. ..+.|++||+||+|+..... ..+....+....+.+++++||++
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~-l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAkt  313 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEI-IRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALT  313 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHH-HHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccC
Confidence            9999999999986   56667665 7776665432 24689999999999965533 22334445555678899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028329          162 RVNVQQCFEELVLKI  176 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~  176 (210)
                      +.|+++++++|.+.+
T Consensus       314 g~GI~eL~~~I~~~l  328 (329)
T TIGR02729       314 GEGLDELLYALAELL  328 (329)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.90  E-value=2.1e-22  Score=163.33  Aligned_cols=152  Identities=24%  Similarity=0.229  Sum_probs=111.2

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCccccccc--------hhh
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSS   81 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~   81 (210)
                      ...++|+++|++|||||||+|+|++.......+.++++.  ....+.+++  ..+.+|||||...+...        ...
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~  278 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK  278 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence            356899999999999999999999876543344344433  344445554  55789999997654432        234


Q ss_pred             cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCC
Q 028329           82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT  161 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  161 (210)
                      .++.+|++++|+|++++.+++..   |+..+.    ..++|+++|+||+|+...      ....+....+.+++.+|+++
T Consensus       279 ~~~~aD~il~V~D~s~~~s~~~~---~l~~~~----~~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~  345 (442)
T TIGR00450       279 AIKQADLVIYVLDASQPLTKDDF---LIIDLN----KSKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ  345 (442)
T ss_pred             HHhhCCEEEEEEECCCCCChhHH---HHHHHh----hCCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec
Confidence            67889999999999998877654   444332    246899999999998643      12334556677899999998


Q ss_pred             CCCHHHHHHHHHHHHHcC
Q 028329          162 RVNVQQCFEELVLKILDT  179 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~~~~  179 (210)
                       .|++++|+.+.+.+.+.
T Consensus       346 -~gI~~~~~~L~~~i~~~  362 (442)
T TIGR00450       346 -LKIKALVDLLTQKINAF  362 (442)
T ss_pred             -CCHHHHHHHHHHHHHHH
Confidence             69999999999988654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.90  E-value=1e-22  Score=149.29  Aligned_cols=158  Identities=20%  Similarity=0.221  Sum_probs=109.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc--CCCCCCC-------------CCceeeeEEEEEEECCeEEEEEEEeCCCccccccch
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS--DNFEELS-------------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLT   79 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~--~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~   79 (210)
                      -+|+++|++++|||||+++|+.  +.+...+             .+.+.++......+......+.+||+||+..+...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4799999999999999999996  4443322             134455555555555567889999999999999999


Q ss_pred             hhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHH-------hC
Q 028329           80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VTKKEGINFARE-------YG  151 (210)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~  151 (210)
                      ..+++++|++++|+|+++.. +..... ++..+.    ..++|+++|+||+|+...+. ...++...+...       .+
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~-~~~~~~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRF-VLKKAL----ELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLD  156 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHH-HHHHHH----HcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCc
Confidence            99999999999999998742 222222 333332    24689999999999964332 123344444422       36


Q ss_pred             CcEEEEccCCCCCHHHH------HHHHHHHHHc
Q 028329          152 CLFIECSAKTRVNVQQC------FEELVLKILD  178 (210)
Q Consensus       152 ~~~~~~sa~~~~~i~~~------~~~l~~~~~~  178 (210)
                      ++++++||++|.|+.++      +++|++.+..
T Consensus       157 ~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~  189 (194)
T cd01891         157 FPVLYASAKNGWASLNLEDPSEDLEPLFDTIIE  189 (194)
T ss_pred             cCEEEeehhccccccccccchhhHHHHHHHHHh
Confidence            78999999999877433      4555555543

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=1.3e-22  Score=166.80  Aligned_cols=155  Identities=21%  Similarity=0.196  Sum_probs=110.5

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccchhhccc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER--------FRTLTSSYYR   84 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~   84 (210)
                      ...+|+++|.+|||||||+++|++.......++++.+..............+.+|||||...        +...+..++.
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~  116 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR  116 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence            34799999999999999999999877655555566555444333322334588999999652        2334455688


Q ss_pred             CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCC
Q 028329           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRV  163 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~  163 (210)
                      .+|++|+|+|+++..++..  ..+...+..    .++|+++|+||+|+....   .+....+  ..++ .++++||++|.
T Consensus       117 ~aD~il~VvD~~~~~s~~~--~~i~~~l~~----~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~  185 (472)
T PRK03003        117 TADAVLFVVDATVGATATD--EAVARVLRR----SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGR  185 (472)
T ss_pred             hCCEEEEEEECCCCCCHHH--HHHHHHHHH----cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCC
Confidence            9999999999998866543  224454443    468999999999986432   1111222  3344 36799999999


Q ss_pred             CHHHHHHHHHHHHHc
Q 028329          164 NVQQCFEELVLKILD  178 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~  178 (210)
                      |++++|+++...+.+
T Consensus       186 gi~eL~~~i~~~l~~  200 (472)
T PRK03003        186 GVGDLLDAVLAALPE  200 (472)
T ss_pred             CcHHHHHHHHhhccc
Confidence            999999999998865

>cd01894 EngA1 EngA1 subfamily

Probab=99.89  E-value=1.2e-22  Score=143.74  Aligned_cols=145  Identities=23%  Similarity=0.153  Sum_probs=99.7

Q ss_pred             EEEcCCCCcHHHHHHHHhcCCCCCCCCCceee--eEEEEEEECCeEEEEEEEeCCCcccccc--------chhhcccCcc
Q 028329           18 LMIGDSGVGKSSLLLSFTSDNFEELSPTIGVD--FKVKYVDVGGKKLKLAIWDTAGQERFRT--------LTSSYYRGAQ   87 (210)
Q Consensus        18 ~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~d   87 (210)
                      +++|.+|+|||||+++|++.........++++  .........  ...+.+||+||...+..        .+...+..+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWG--GREFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEEC--CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            47899999999999999977532222222222  222233333  36789999999877543        3345678899


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCCCHH
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQ  166 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~  166 (210)
                      ++++|+|+.+..+.... . +...+..    .+.|+++|+||+|+......     .......+. +++++|++++.|++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~-~~~~~~~----~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~  147 (157)
T cd01894          79 VILFVVDGREGLTPADE-E-IAKYLRK----SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIG  147 (157)
T ss_pred             EEEEEEeccccCCccHH-H-HHHHHHh----cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHH
Confidence            99999999876544332 1 3333332    35899999999998654322     222334565 68999999999999


Q ss_pred             HHHHHHHHH
Q 028329          167 QCFEELVLK  175 (210)
Q Consensus       167 ~~~~~l~~~  175 (210)
                      ++|+++.+.
T Consensus       148 ~l~~~l~~~  156 (157)
T cd01894         148 DLLDAILEL  156 (157)
T ss_pred             HHHHHHHhh
Confidence            999999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00089 era GTPase Era; Reviewed

Probab=99.89  E-value=3.1e-22  Score=155.62  Aligned_cols=168  Identities=16%  Similarity=0.139  Sum_probs=115.8

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc--------cchhhccc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR--------TLTSSYYR   84 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~~   84 (210)
                      +.-.|+++|++|||||||+|+|++.......+.+.++..............+.+|||||.....        ......+.
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            4467999999999999999999998876555544433333322222234789999999964432        22334567


Q ss_pred             CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEEEEccCCCC
Q 028329           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-CLFIECSAKTRV  163 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~  163 (210)
                      .+|++++|+|+++..+  .....+...+.    ..+.|+++|+||+|+.............+....+ .+++++||+++.
T Consensus        84 ~~D~il~vvd~~~~~~--~~~~~i~~~l~----~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~  157 (292)
T PRK00089         84 DVDLVLFVVDADEKIG--PGDEFILEKLK----KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD  157 (292)
T ss_pred             cCCEEEEEEeCCCCCC--hhHHHHHHHHh----hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence            8999999999998322  22222333333    2368999999999996433333333444444444 469999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCccccc
Q 028329          164 NVQQCFEELVLKILDTPSLLAEG  186 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~~~~~~~~  186 (210)
                      |++++++++.+.+......++.+
T Consensus       158 gv~~L~~~L~~~l~~~~~~y~~~  180 (292)
T PRK00089        158 NVDELLDVIAKYLPEGPPYYPED  180 (292)
T ss_pred             CHHHHHHHHHHhCCCCCCCCCCC
Confidence            99999999999998777666554

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.89  E-value=1.2e-22  Score=137.15  Aligned_cols=173  Identities=25%  Similarity=0.509  Sum_probs=147.6

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      --.+||.++|++..|||||+-.+.++.+.+.+. +.|..+....+.+.+.++.+.+||++|++++....+.....+-+++
T Consensus        18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl   97 (205)
T KOG1673|consen   18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL   97 (205)
T ss_pred             ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence            346999999999999999999999988866555 8999999999999999999999999999999999888889999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC----CCC-ceecHHHHHHHHHHhCCcEEEEccCCCCCH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK----ESE-RVVTKKEGINFAREYGCLFIECSAKTRVNV  165 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~----~~~-~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  165 (210)
                      ++||++.+.++..+.. |...-+. .++.-+| |+||+|.|+    +.+ ......+++.+++-.+++.++||+..+.|+
T Consensus        98 FmFDLt~r~TLnSi~~-WY~QAr~-~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv  174 (205)
T KOG1673|consen   98 FMFDLTRRSTLNSIKE-WYRQARG-LNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINV  174 (205)
T ss_pred             EEEecCchHHHHHHHH-HHHHHhc-cCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccH
Confidence            9999999999999999 7776654 4566688 889999986    222 122334578888889999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCcccccc
Q 028329          166 QQCFEELVLKILDTPSLLAEGS  187 (210)
Q Consensus       166 ~~~~~~l~~~~~~~~~~~~~~~  187 (210)
                      ..+|.-++.+++.-....++..
T Consensus       175 ~KIFK~vlAklFnL~~ti~~~~  196 (205)
T KOG1673|consen  175 QKIFKIVLAKLFNLPWTIPEIL  196 (205)
T ss_pred             HHHHHHHHHHHhCCceeccccc
Confidence            9999999999998887766544

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.89  E-value=6.7e-22  Score=161.51  Aligned_cols=164  Identities=23%  Similarity=0.140  Sum_probs=111.5

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccch-----------h
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLT-----------S   80 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-----------~   80 (210)
                      ...++|+++|.+|+|||||+++|++.......+.++++.......+......+.+|||||........           .
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~  249 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL  249 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence            45699999999999999999999987754444444444443333222223468999999965433221           2


Q ss_pred             hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-H----hCCcEE
Q 028329           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-E----YGCLFI  155 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~  155 (210)
                      ..++.+|++++|+|++++.+.....  +...+.    ..++|+++|+||+|+... ....++...... .    ..++++
T Consensus       250 ~~~~~ad~~ilV~D~~~~~~~~~~~--~~~~~~----~~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi  322 (429)
T TIGR03594       250 KAIERADVVLLVLDATEGITEQDLR--IAGLIL----EAGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIV  322 (429)
T ss_pred             HHHHhCCEEEEEEECCCCccHHHHH--HHHHHH----HcCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceE
Confidence            3578899999999999887765543  333332    246899999999998621 111122222221 1    246899


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028329          156 ECSAKTRVNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       156 ~~sa~~~~~i~~~~~~l~~~~~~~~~~  182 (210)
                      ++||++|.|++++|+++.+.+......
T Consensus       323 ~~SA~~g~~v~~l~~~i~~~~~~~~~~  349 (429)
T TIGR03594       323 FISALTGQGVDKLLDAIDEVYENANRR  349 (429)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHhcCc
Confidence            999999999999999999877655443

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=1.8e-22  Score=166.09  Aligned_cols=163  Identities=19%  Similarity=0.144  Sum_probs=112.2

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeE--EEEEEECCeEEEEEEEeCCCcc----------ccccch
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFK--VKYVDVGGKKLKLAIWDTAGQE----------RFRTLT   79 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~   79 (210)
                      ...++|+++|.+|||||||+++|++.......+.++++..  ...+.+++.  .+.+|||||..          .+....
T Consensus       209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~  286 (472)
T PRK03003        209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLR  286 (472)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHH
Confidence            3569999999999999999999998876444443444333  334455554  46799999952          222221


Q ss_pred             -hhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHH-HhCCcEE
Q 028329           80 -SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGINFAR-EYGCLFI  155 (210)
Q Consensus        80 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~-~~~~~~~  155 (210)
                       ...++.+|++++|+|+++..++....  +...+.    ..++|+++|+||+|+......  ...+...... ...++++
T Consensus       287 ~~~~i~~ad~vilV~Da~~~~s~~~~~--~~~~~~----~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~  360 (472)
T PRK03003        287 THAAIEAAEVAVVLIDASEPISEQDQR--VLSMVI----EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRV  360 (472)
T ss_pred             HHHHHhcCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEE
Confidence             23568899999999999988877664  333332    246899999999999643211  1112221111 2246799


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028329          156 ECSAKTRVNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       156 ~~sa~~~~~i~~~~~~l~~~~~~~~~~  182 (210)
                      ++||++|.|++++|..+.+.+.+....
T Consensus       361 ~~SAk~g~gv~~lf~~i~~~~~~~~~~  387 (472)
T PRK03003        361 NISAKTGRAVDKLVPALETALESWDTR  387 (472)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHhccc
Confidence            999999999999999999888655544

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.89  E-value=2e-22  Score=164.32  Aligned_cols=148  Identities=23%  Similarity=0.215  Sum_probs=108.7

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCccccccc--------hhhc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSSY   82 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~   82 (210)
                      ..++|+++|.+|+|||||+|+|++.......+.++++.  ....+.+++  ..+.+|||||...+...        ....
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            35899999999999999999999877543333333333  333444544  56899999997654332        2235


Q ss_pred             ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCC
Q 028329           83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR  162 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  162 (210)
                      +..+|++++|+|++++.+++.... |..       ..+.|+++|+||+|+.......        ...+.+++++||+++
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~-l~~-------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg  355 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEI-LEE-------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTG  355 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHH-HHh-------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCC
Confidence            788999999999999887765433 332       3468999999999996443221        234567999999999


Q ss_pred             CCHHHHHHHHHHHHHc
Q 028329          163 VNVQQCFEELVLKILD  178 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~~  178 (210)
                      .|+++++++|.+.+..
T Consensus       356 ~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        356 EGIDELREAIKELAFG  371 (449)
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999998854

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.89  E-value=3.4e-22  Score=157.89  Aligned_cols=153  Identities=22%  Similarity=0.189  Sum_probs=106.2

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc---------ccccchhhc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE---------RFRTLTSSY   82 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~   82 (210)
                      ..++|+++|.+|||||||+|+|++.... ...+....+.....+.+.+ ...+.+|||+|..         .+...+ ..
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EE  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence            4589999999999999999999987642 1222222233344445532 2478999999972         122222 24


Q ss_pred             ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCC
Q 028329           83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR  162 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  162 (210)
                      +.++|++++|+|++++.+++.... |...+... ...+.|+++|+||+|+.....+     ... .....+++++||+++
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l-~~~~~piIlV~NK~Dl~~~~~v-----~~~-~~~~~~~i~iSAktg  337 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQIEA-VEKVLEEL-GAEDIPQLLVYNKIDLLDEPRI-----ERL-EEGYPEAVFVSAKTG  337 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHHHH-HHHHHHHh-ccCCCCEEEEEEeecCCChHhH-----HHH-HhCCCCEEEEEccCC
Confidence            678999999999999988777655 66655542 2346899999999998643211     111 112246899999999


Q ss_pred             CCHHHHHHHHHHH
Q 028329          163 VNVQQCFEELVLK  175 (210)
Q Consensus       163 ~~i~~~~~~l~~~  175 (210)
                      .|+++++++|.+.
T Consensus       338 ~GI~eL~~~I~~~  350 (351)
T TIGR03156       338 EGLDLLLEAIAER  350 (351)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=2.2e-21  Score=155.78  Aligned_cols=162  Identities=19%  Similarity=0.187  Sum_probs=112.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCe-EEEEEEEeCCCccc----cccch---hhcccCc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK-KLKLAIWDTAGQER----FRTLT---SSYYRGA   86 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~----~~~~~---~~~~~~~   86 (210)
                      ..|+++|.||||||||+++|++.... ....+.+|.......+... ...+.+||+||...    ...+.   ...+..+
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~k-Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPK-IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCc-cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            48999999999999999999976532 1222222332222222112 45689999999532    11222   2335679


Q ss_pred             cEEEEEEeCCCc---ccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCC
Q 028329           87 QGIIMVYDVTRR---DTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR  162 (210)
Q Consensus        87 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  162 (210)
                      +++++|+|+++.   ++++.... |...+..+.. ..++|++||+||+|+...    .+....+....+.+++++||+++
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~-i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tg  312 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEK-INKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTG  312 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHH-HHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCC
Confidence            999999999865   56666655 7777766533 246899999999998432    23344555556678999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCc
Q 028329          163 VNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~~~~~~  182 (210)
                      .|+++++++|.+.+.+.+..
T Consensus       313 eGI~eL~~~L~~~l~~~~~~  332 (424)
T PRK12297        313 QGLDELLYAVAELLEETPEF  332 (424)
T ss_pred             CCHHHHHHHHHHHHHhCccc
Confidence            99999999999988776543

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.88  E-value=1.3e-22  Score=134.95  Aligned_cols=159  Identities=24%  Similarity=0.336  Sum_probs=125.4

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ..+.+||+++|-.++|||||++.|.+.+.....|+.|+....+.+  + .++.+.+||.+|+...++.|..++.+.|++|
T Consensus        14 t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~--~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~lI   90 (185)
T KOG0074|consen   14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEY--D-GTFHLNVWDIGGQRGIRPYWSNYYENVDGLI   90 (185)
T ss_pred             CcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEee--c-CcEEEEEEecCCccccchhhhhhhhccceEE
Confidence            367899999999999999999999998887777888866554443  3 4689999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHH-----HHHhCCcEEEEccCCCCCH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINF-----AREYGCLFIECSAKTRVNV  165 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~sa~~~~~i  165 (210)
                      ||+|.+|...|++.-+.+.+.+.. .....+|+++.+||.|+......  +++..-     .+.....+.+||+..++|+
T Consensus        91 yVIDS~D~krfeE~~~el~ELlee-eKl~~vpvlIfankQdlltaa~~--eeia~klnl~~lrdRswhIq~csals~eg~  167 (185)
T KOG0074|consen   91 YVIDSTDEKRFEEISEELVELLEE-EKLAEVPVLIFANKQDLLTAAKV--EEIALKLNLAGLRDRSWHIQECSALSLEGS  167 (185)
T ss_pred             EEEeCCchHhHHHHHHHHHHHhhh-hhhhccceeehhhhhHHHhhcch--HHHHHhcchhhhhhceEEeeeCccccccCc
Confidence            999999999999887756666554 45668999999999998533221  111111     1112345789999999999


Q ss_pred             HHHHHHHHHH
Q 028329          166 QQCFEELVLK  175 (210)
Q Consensus       166 ~~~~~~l~~~  175 (210)
                      .+-.+|+...
T Consensus       168 ~dg~~wv~sn  177 (185)
T KOG0074|consen  168 TDGSDWVQSN  177 (185)
T ss_pred             cCcchhhhcC
Confidence            9999987643

>cd04163 Era Era subfamily

Probab=99.88  E-value=1.6e-21  Score=138.95  Aligned_cols=156  Identities=17%  Similarity=0.098  Sum_probs=104.9

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------chhhcccC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT--------LTSSYYRG   85 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~   85 (210)
                      ..+|+++|++|+|||||++++++.......+....+..............+.+||+||......        .....+..
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~   82 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD   82 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence            5789999999999999999999876544333222222222223333457789999999654332        22345778


Q ss_pred             ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCcEEEEccCCCCC
Q 028329           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRVN  164 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~  164 (210)
                      +|++++|+|++++.+  .....+...+..    .+.|+++|+||+|+........+....+.... ..+++.+|++++.+
T Consensus        83 ~d~i~~v~d~~~~~~--~~~~~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  156 (168)
T cd04163          83 VDLVLFVVDASEPIG--EGDEFILELLKK----SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN  156 (168)
T ss_pred             CCEEEEEEECCCccC--chHHHHHHHHHH----hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence            999999999998722  222223343433    26899999999998643322233333333333 35799999999999


Q ss_pred             HHHHHHHHHHH
Q 028329          165 VQQCFEELVLK  175 (210)
Q Consensus       165 i~~~~~~l~~~  175 (210)
                      +++++++|.+.
T Consensus       157 ~~~l~~~l~~~  167 (168)
T cd04163         157 VDELLEEIVKY  167 (168)
T ss_pred             hHHHHHHHHhh
Confidence            99999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>COG1159 Era GTPase [General function prediction only]

Probab=99.88  E-value=5.8e-22  Score=148.59  Aligned_cols=173  Identities=19%  Similarity=0.119  Sum_probs=126.8

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc--------ccchhhccc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF--------RTLTSSYYR   84 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~~   84 (210)
                      +.--|+++|.||||||||+|+|.+.+.+..++-+.+|......-+.....++.++||||....        .......+.
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~   84 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK   84 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence            456799999999999999999999999888886666666666555555889999999994433        233445578


Q ss_pred             CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCC
Q 028329           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRV  163 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~  163 (210)
                      .+|++++|+|+++...-  -.+...+.++.    .+.|+++++||+|..............+.....+ .++++||+++.
T Consensus        85 dvDlilfvvd~~~~~~~--~d~~il~~lk~----~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~  158 (298)
T COG1159          85 DVDLILFVVDADEGWGP--GDEFILEQLKK----TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD  158 (298)
T ss_pred             cCcEEEEEEeccccCCc--cHHHHHHHHhh----cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence            89999999999985432  11213333332    4679999999999865554222222333333333 59999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCcccccccCcc
Q 028329          164 NVQQCFEELVLKILDTPSLLAEGSKGLK  191 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~  191 (210)
                      |++.+.+.+...+.+....++.+.-...
T Consensus       159 n~~~L~~~i~~~Lpeg~~~yp~d~itD~  186 (298)
T COG1159         159 NVDTLLEIIKEYLPEGPWYYPEDQITDR  186 (298)
T ss_pred             CHHHHHHHHHHhCCCCCCcCChhhccCC
Confidence            9999999999999999988877654433

>cd01895 EngA2 EngA2 subfamily

Probab=99.88  E-value=2.4e-21  Score=139.04  Aligned_cols=154  Identities=25%  Similarity=0.186  Sum_probs=101.9

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE--EEEEECCeEEEEEEEeCCCcccccc-----------chh
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKV--KYVDVGGKKLKLAIWDTAGQERFRT-----------LTS   80 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~~-----------~~~   80 (210)
                      .++|+++|++|+|||||+++|.+.........++++...  ..+..++  ..+.+||+||......           ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            579999999999999999999987643333322222222  2233343  3478999999643311           112


Q ss_pred             hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-HHh----CCcEE
Q 028329           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-REY----GCLFI  155 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-~~~----~~~~~  155 (210)
                      ..+..+|++++|+|++++.+.....  +...+.    ..+.|+++++||+|+............... ...    ..+++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR--IAGLIL----EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIV  153 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH--HHHHHH----hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceE
Confidence            3457899999999999987755432  222222    235899999999998655322222222222 222    36799


Q ss_pred             EEccCCCCCHHHHHHHHHHH
Q 028329          156 ECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       156 ~~sa~~~~~i~~~~~~l~~~  175 (210)
                      ++||+++.|+++++.++.+.
T Consensus       154 ~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         154 FISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             EEeccCCCCHHHHHHHHHHh
Confidence            99999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.88  E-value=1.3e-21  Score=142.50  Aligned_cols=155  Identities=17%  Similarity=0.139  Sum_probs=109.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCC---------------ceeeeEEEEEEECCeEEEEEEEeCCCccccccchh
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPT---------------IGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS   80 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~   80 (210)
                      +|+++|.+|+|||||+++|++.........               .+.+.......+......+.+||+||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            589999999999999999998766543321               11222222222333356799999999988888888


Q ss_pred             hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHHH---------
Q 028329           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGINFARE---------  149 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~---------  149 (210)
                      ..+..+|++++|+|+++..+.... . ++..+.    ..+.|+++++||+|+..+...  ..+.+......         
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~~-~-~~~~~~----~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQTR-E-HLRIAR----EGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE  154 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHHH-H-HHHHHH----HCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence            889999999999999886644322 2 333333    257899999999998653221  12233333332         


Q ss_pred             -----hCCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329          150 -----YGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       150 -----~~~~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                           ...+++++||+++.|++++++++.+.+
T Consensus       155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                 246799999999999999999999876

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.88  E-value=4e-22  Score=133.41  Aligned_cols=157  Identities=24%  Similarity=0.396  Sum_probs=124.4

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ....+.++|..++|||||++.+..+.+.+ ..|+.|...+    .+....+.+.+||.||+..+++.|..+++++++++|
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            45789999999999999999999877754 3457776554    334456789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCCHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~  166 (210)
                      |+|+.+++.++..+..+...+.. ..-..+|++|.|||.|++..  ....+......     ...+-.|-+|+++..|++
T Consensus        95 ~VDaad~~k~~~sr~EL~~LL~k-~~l~gip~LVLGnK~d~~~A--L~~~~li~rmgL~sitdREvcC~siScke~~Nid  171 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDLLDK-PSLTGIPLLVLGNKIDLPGA--LSKIALIERMGLSSITDREVCCFSISCKEKVNID  171 (186)
T ss_pred             EeecCCcccchhhHHHHHHHhcc-hhhcCCcEEEecccccCccc--ccHHHHHHHhCccccccceEEEEEEEEcCCccHH
Confidence            99999999999988877776655 44567999999999998644  23222222111     122348999999999999


Q ss_pred             HHHHHHHHHH
Q 028329          167 QCFEELVLKI  176 (210)
Q Consensus       167 ~~~~~l~~~~  176 (210)
                      -+.+|+.+..
T Consensus       172 ~~~~Wli~hs  181 (186)
T KOG0075|consen  172 ITLDWLIEHS  181 (186)
T ss_pred             HHHHHHHHHh
Confidence            9999998865

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=1.5e-21  Score=158.64  Aligned_cols=167  Identities=16%  Similarity=0.121  Sum_probs=111.9

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc-------cchhhcccC
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-------TLTSSYYRG   85 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~   85 (210)
                      ....|+|+|.||||||||+++|++.... ....+++|.......+......+.+||+||.....       ......+..
T Consensus       158 ~~adV~LVG~PNAGKSTLln~Ls~akpk-IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        158 SVADVGLVGFPSAGKSSLISALSAAKPK-IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             ccceEEEEEcCCCCHHHHHHHHhcCCcc-ccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            4578999999999999999999976532 22233333333333333334679999999953211       112234678


Q ss_pred             ccEEEEEEeCCCc----ccHHHHHHHHHHHHhhhc----------cCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC
Q 028329           86 AQGIIMVYDVTRR----DTFTNLSDVWAKEIDLYS----------TNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG  151 (210)
Q Consensus        86 ~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~----------~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~  151 (210)
                      +|++|+|+|+++.    +.+..... +...+..+.          ...+.|++||+||+|++...... +.........+
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~~~-i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l~~~g  314 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDIDA-LEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPELEARG  314 (500)
T ss_pred             cCEEEEEECCcccccccCchhhHHH-HHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHHHHcC
Confidence            9999999999853    34444433 444554443          23468999999999996443322 22233344557


Q ss_pred             CcEEEEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028329          152 CLFIECSAKTRVNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       152 ~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~  182 (210)
                      ++++++||+++.|+++++.+|.+.+...+..
T Consensus       315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~  345 (500)
T PRK12296        315 WPVFEVSAASREGLRELSFALAELVEEARAA  345 (500)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhcc
Confidence            8899999999999999999999988776543

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.88  E-value=1.4e-21  Score=138.49  Aligned_cols=140  Identities=17%  Similarity=0.142  Sum_probs=98.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccch----hhcccCccEEEE
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLT----SSYYRGAQGIIM   91 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~----~~~~~~~d~~i~   91 (210)
                      +|+++|++|+|||||+++|.+.. .....+.+.       .+...    .+||+||.......+    ...+..+|++++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~-~~~~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~   70 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNY-TLARKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY   70 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC-ccCccceEE-------EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence            79999999999999999988643 221122222       22222    269999963222222    233678999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC--cEEEEccCCCCCHHHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC--LFIECSAKTRVNVQQCF  169 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~sa~~~~~i~~~~  169 (210)
                      |+|+++.+++...   |...+     ..+.|+++++||+|+...   ..+....++...++  +++++||+++.|++++|
T Consensus        71 v~d~~~~~s~~~~---~~~~~-----~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~  139 (158)
T PRK15467         71 VHGANDPESRLPA---GLLDI-----GVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQLV  139 (158)
T ss_pred             EEeCCCcccccCH---HHHhc-----cCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence            9999988776332   33322     135789999999998542   34456677777775  89999999999999999


Q ss_pred             HHHHHHHHc
Q 028329          170 EELVLKILD  178 (210)
Q Consensus       170 ~~l~~~~~~  178 (210)
                      +++.+.+.+
T Consensus       140 ~~l~~~~~~  148 (158)
T PRK15467        140 DYLASLTKQ  148 (158)
T ss_pred             HHHHHhchh
Confidence            999887644

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.87  E-value=4.9e-21  Score=160.50  Aligned_cols=158  Identities=21%  Similarity=0.261  Sum_probs=116.4

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCC-------CCCCC-------CCceeeeEEEEEEE-----CCeEEEEEEEeCCCccc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDN-------FEELS-------PTIGVDFKVKYVDV-----GGKKLKLAIWDTAGQER   74 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~-------~~~~~-------~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~~   74 (210)
                      .-+|+++|++++|||||+++|+...       +...+       ...+.++....+.+     ++..+.+.||||||+..
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            3589999999999999999998642       11111       12355555433332     46678999999999999


Q ss_pred             cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC--
Q 028329           75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC--  152 (210)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~--  152 (210)
                      +...+..++..+|++++|+|+++..+...... |...+.     .++|+++|+||+|+....  .......+...++.  
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~-~~~~~~-----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~  154 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLAN-VYLALE-----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDA  154 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHH-HHHHHH-----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCc
Confidence            99999999999999999999999877766655 444332     357999999999986432  11222344444555  


Q ss_pred             -cEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329          153 -LFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       153 -~~~~~sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                       .++++||++|.|++++|++|.+.+...
T Consensus       155 ~~vi~vSAktG~GI~~Lle~I~~~lp~p  182 (595)
T TIGR01393       155 SEAILASAKTGIGIEEILEAIVKRVPPP  182 (595)
T ss_pred             ceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence             389999999999999999999887543

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01889 SelB_euk SelB subfamily

Probab=99.87  E-value=2.6e-21  Score=141.68  Aligned_cols=159  Identities=18%  Similarity=0.133  Sum_probs=102.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC----CCCCC----C--CCceeeeEEEEEE----------ECCeEEEEEEEeCCCccc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD----NFEEL----S--PTIGVDFKVKYVD----------VGGKKLKLAIWDTAGQER   74 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~----~~~~~----~--~~~~~~~~~~~~~----------~~~~~~~~~l~D~~g~~~   74 (210)
                      ++|+++|++++|||||+++|+..    .+...    .  .+.........+.          ..+....+.+||+||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999963    11111    1  1222222222222          123367899999999866


Q ss_pred             cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHH----
Q 028329           75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGINFAR----  148 (210)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~----  148 (210)
                      +..........+|++++|+|+++......... +. ....    .+.|+++++||+|+.....  ...++......    
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~-~~-~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~  154 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAEC-LV-IGEI----LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLE  154 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHH-HH-HHHH----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHH
Confidence            54444344567899999999988654433322 21 1111    2579999999999863322  11222222211    


Q ss_pred             ---HhCCcEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329          149 ---EYGCLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       149 ---~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                         ..+++++++||+++.|++++++++.+++.-.
T Consensus       155 ~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~  188 (192)
T cd01889         155 KTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP  188 (192)
T ss_pred             hcCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence               1356799999999999999999999887543

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=2e-22  Score=134.43  Aligned_cols=163  Identities=22%  Similarity=0.326  Sum_probs=127.7

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ++..+|+++|--|+||||++.++.-+......|+++.......+    ...++.+||++|+..+++.|+.++.+.|++||
T Consensus        16 e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~y----KNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   16 EREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPY----KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             ccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcccccc----ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            47789999999999999999999988877777888866654433    67889999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce---ecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV---VTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  168 (210)
                      |+|.+|.+........+...+.. ..-.+..++|++||+|.+....   +.........++.-+.++.+||.+|+|++..
T Consensus        92 VVDssd~dris~a~~el~~mL~E-~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~  170 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQE-EELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPA  170 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhcc-HhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHH
Confidence            99999998877777656666554 2334577889999999753211   1111112222333467999999999999999


Q ss_pred             HHHHHHHHHcC
Q 028329          169 FEELVLKILDT  179 (210)
Q Consensus       169 ~~~l~~~~~~~  179 (210)
                      ++|+.+.+..+
T Consensus       171 ~DWL~~~l~~~  181 (182)
T KOG0072|consen  171 MDWLQRPLKSR  181 (182)
T ss_pred             HHHHHHHHhcc
Confidence            99999988654

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.87  E-value=5e-21  Score=141.20  Aligned_cols=160  Identities=18%  Similarity=0.163  Sum_probs=101.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCC--CCCCCceeeeEEE--EEEEC---------------------------C----
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFE--ELSPTIGVDFKVK--YVDVG---------------------------G----   59 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~--~~~~~~~~~~~~~--~~~~~---------------------------~----   59 (210)
                      ++|+++|+.|+|||||+..|.+....  ......+.++...  .....                           +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            47999999999999999999755211  1111111111111  00000                           1    


Q ss_pred             eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee-
Q 028329           60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-  138 (210)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-  138 (210)
                      ....+.|||+||+..+...+...+..+|++++|+|++++........ .+..+..   ....|+++++||+|+...... 
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~-~l~~~~~---~~~~~iiivvNK~Dl~~~~~~~  156 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSE-HLAALEI---MGLKHIIIVQNKIDLVKEEQAL  156 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHH-HHHHHHH---cCCCcEEEEEEchhccCHHHHH
Confidence            12678999999998888887788888999999999997421111112 1122221   122478999999998643221 


Q ss_pred             -cHHHHHHHHHHh---CCcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329          139 -TKKEGINFAREY---GCLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       139 -~~~~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~~~  178 (210)
                       ..++...++...   +++++++||+++.|++++|+++.+.+.+
T Consensus       157 ~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         157 ENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence             122333333332   5679999999999999999999887644

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=5.9e-21  Score=152.55  Aligned_cols=171  Identities=16%  Similarity=0.129  Sum_probs=116.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCe-EEEEEEEeCCCccccc-------cchhhcccCc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK-KLKLAIWDTAGQERFR-------TLTSSYYRGA   86 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~-------~~~~~~~~~~   86 (210)
                      ..|.|+|.||||||||+|+|++... ...+.+.+|.......+... ...+.++|+||...-.       ......+..+
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            4799999999999999999997653 33333444443333322222 3458999999964321       1122347789


Q ss_pred             cEEEEEEeCC---CcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcEEEEccC
Q 028329           87 QGIIMVYDVT---RRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYG--CLFIECSAK  160 (210)
Q Consensus        87 d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~  160 (210)
                      |++++|+|++   +.+.++.... |...+..+.. ..+.|++||+||+|+.....+ .+....+....+  .+++.+||+
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~~~-l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~  316 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENARI-IINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAA  316 (390)
T ss_pred             CEEEEEeccCcccccChHHHHHH-HHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence            9999999988   4455666555 6666665421 236899999999998644322 223334444444  468999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCCccccccc
Q 028329          161 TRVNVQQCFEELVLKILDTPSLLAEGSK  188 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~~~~~~~~~~  188 (210)
                      ++.++++++++|.+.+.+....++.+..
T Consensus       317 tg~GIdeLl~~I~~~L~~~~~~~~~~~~  344 (390)
T PRK12298        317 SGLGVKELCWDLMTFIEENPREEAEEAE  344 (390)
T ss_pred             CCcCHHHHHHHHHHHhhhCcccCCcccc
Confidence            9999999999999999887666555444

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.87  E-value=4.9e-21  Score=156.44  Aligned_cols=153  Identities=24%  Similarity=0.208  Sum_probs=108.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc--------cccccchhhcccCcc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ--------ERFRTLTSSYYRGAQ   87 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--------~~~~~~~~~~~~~~d   87 (210)
                      +|+++|.+|||||||+++|++.......+.++.+..............+.+|||||.        ..+.......+..+|
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad   80 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD   80 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence            589999999999999999998775444444554443333332223346999999995        333445556788999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCCCHH
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQ  166 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~  166 (210)
                      ++++|+|+.+..+....  .+...++.    .++|+++|+||+|+.......     ..+..+++ +++++||+++.|+.
T Consensus        81 ~vl~vvD~~~~~~~~d~--~i~~~l~~----~~~piilVvNK~D~~~~~~~~-----~~~~~lg~~~~~~vSa~~g~gv~  149 (429)
T TIGR03594        81 VILFVVDGREGLTPEDE--EIAKWLRK----SGKPVILVANKIDGKKEDAVA-----AEFYSLGFGEPIPISAEHGRGIG  149 (429)
T ss_pred             EEEEEEeCCCCCCHHHH--HHHHHHHH----hCCCEEEEEECccCCcccccH-----HHHHhcCCCCeEEEeCCcCCChH
Confidence            99999999876443322  13344443    368999999999986543221     12345676 69999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028329          167 QCFEELVLKILDT  179 (210)
Q Consensus       167 ~~~~~l~~~~~~~  179 (210)
                      ++++++.+.+.+.
T Consensus       150 ~ll~~i~~~l~~~  162 (429)
T TIGR03594       150 DLLDAILELLPEE  162 (429)
T ss_pred             HHHHHHHHhcCcc
Confidence            9999999887543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.87  E-value=1.1e-20  Score=139.18  Aligned_cols=119  Identities=18%  Similarity=0.314  Sum_probs=89.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc-cEEEEEEe
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA-QGIIMVYD   94 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~-d~~i~v~d   94 (210)
                      +|+++|+++||||||+++|..+.+....++..................+.+||+||+..++..+...++.+ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999999887766555433323222222223456799999999999998888888988 99999999


Q ss_pred             CCCc-ccHHHHHHHHHHHHhhhc-cCCCCcEEEEEeCCCCCC
Q 028329           95 VTRR-DTFTNLSDVWAKEIDLYS-TNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        95 ~~~~-~s~~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~  134 (210)
                      +.+. .++.....++...+.... ....+|++|++||+|+..
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            9997 677777774555443321 235799999999999853

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.87  E-value=1.7e-20  Score=137.75  Aligned_cols=159  Identities=20%  Similarity=0.182  Sum_probs=106.3

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc----------ccccc
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE----------RFRTL   78 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~   78 (210)
                      .....++|+++|++|+|||||+++|++..+ ....++++.+........   ...+.+||+||..          .+...
T Consensus        20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~   96 (196)
T PRK00454         20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL   96 (196)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence            344679999999999999999999998763 444446665554433332   3679999999942          22233


Q ss_pred             hhhccc---CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec--HHHHHHHHHHhCCc
Q 028329           79 TSSYYR---GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT--KKEGINFAREYGCL  153 (210)
Q Consensus        79 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~  153 (210)
                      ...++.   ..+++++++|.+++.+.....  +...+.    ..+.|+++++||+|+.......  .+.+.........+
T Consensus        97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--i~~~l~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~  170 (196)
T PRK00454         97 IEEYLRTRENLKGVVLLIDSRHPLKELDLQ--MIEWLK----EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDE  170 (196)
T ss_pred             HHHHHHhCccceEEEEEEecCCCCCHHHHH--HHHHHH----HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCc
Confidence            333444   346888899988765443321  223332    2468899999999986443221  22233333333678


Q ss_pred             EEEEccCCCCCHHHHHHHHHHHHH
Q 028329          154 FIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       154 ~~~~sa~~~~~i~~~~~~l~~~~~  177 (210)
                      ++++|++++.|++++++.|.+.+.
T Consensus       171 ~~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        171 VILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhc
Confidence            999999999999999999887764

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.86  E-value=2.1e-20  Score=156.10  Aligned_cols=154  Identities=18%  Similarity=0.217  Sum_probs=108.4

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ..+..+|+++|++++|||||+++|.+..+..... ..+.+.....+...+. ..+.||||||+..+..++...+..+|++
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia  162 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV  162 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence            3467899999999999999999999877654322 2222333333343322 2789999999999999888888999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC---------CcEEEEccC
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG---------CLFIECSAK  160 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~  160 (210)
                      ++|+|+++...-..... + ..    ....++|+++++||+|++..   ..+.+...+...+         .+++++||+
T Consensus       163 ILVVda~dgv~~qT~e~-i-~~----~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAk  233 (587)
T TIGR00487       163 VLVVAADDGVMPQTIEA-I-SH----AKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSAL  233 (587)
T ss_pred             EEEEECCCCCCHhHHHH-H-HH----HHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECC
Confidence            99999987533222221 2 11    22346899999999998643   2223333332222         469999999


Q ss_pred             CCCCHHHHHHHHHH
Q 028329          161 TRVNVQQCFEELVL  174 (210)
Q Consensus       161 ~~~~i~~~~~~l~~  174 (210)
                      +|.|++++|+++..
T Consensus       234 tGeGI~eLl~~I~~  247 (587)
T TIGR00487       234 TGDGIDELLDMILL  247 (587)
T ss_pred             CCCChHHHHHhhhh
Confidence            99999999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK11058 GTPase HflX; Provisional

Probab=99.86  E-value=8.5e-21  Score=153.23  Aligned_cols=158  Identities=20%  Similarity=0.152  Sum_probs=106.9

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc--ccchh------hccc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF--RTLTS------SYYR   84 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~~------~~~~   84 (210)
                      ..+|+++|.+|||||||+|+|++..... ..+..+.+.....+.+.+. ..+.+|||+|....  ...+.      ..+.
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            3689999999999999999999876432 2222222233333444332 25789999997321  12222      2357


Q ss_pred             CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc-EEEEccCCCC
Q 028329           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRV  163 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~  163 (210)
                      .+|++++|+|++++.++..+.. |...+... ...++|+++|+||+|+......   ...  ....+.+ ++.+||++|.
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~-v~~iL~el-~~~~~pvIiV~NKiDL~~~~~~---~~~--~~~~~~~~~v~ISAktG~  348 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEA-VNTVLEEI-DAHEIPTLLVMNKIDMLDDFEP---RID--RDEENKPIRVWLSAQTGA  348 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHH-HHHHHHHh-ccCCCCEEEEEEcccCCCchhH---HHH--HHhcCCCceEEEeCCCCC
Confidence            8999999999999988777654 55555442 2346899999999998543111   111  1123445 5889999999


Q ss_pred             CHHHHHHHHHHHHHcC
Q 028329          164 NVQQCFEELVLKILDT  179 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~  179 (210)
                      |+++++++|.+.+...
T Consensus       349 GIdeL~e~I~~~l~~~  364 (426)
T PRK11058        349 GIPLLFQALTERLSGE  364 (426)
T ss_pred             CHHHHHHHHHHHhhhc
Confidence            9999999999988543

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=9.9e-21  Score=154.85  Aligned_cols=148  Identities=22%  Similarity=0.174  Sum_probs=103.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCccc--------cccchhhccc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQER--------FRTLTSSYYR   84 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~   84 (210)
                      ++|+++|.+|||||||+++|.+.........++.+.  ....+..++  ..+.+|||||...        +.......+.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            589999999999999999999877543333333333  333344444  6789999999876        2233445678


Q ss_pred             CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc-EEEEccCCCC
Q 028329           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRV  163 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~  163 (210)
                      .+|++++|+|+++..+....  .+...+..    .+.|+++|+||+|+....    ..... +..+++. ++++||+++.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~--~~~~~l~~----~~~piilv~NK~D~~~~~----~~~~~-~~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADE--EIAKILRK----SNKPVILVVNKVDGPDEE----ADAYE-FYSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHH--HHHHHHHH----cCCcEEEEEECccCccch----hhHHH-HHhcCCCCCEEEEeeCCC
Confidence            89999999999886443222  12233332    368999999999975321    12222 2355664 8999999999


Q ss_pred             CHHHHHHHHHHH
Q 028329          164 NVQQCFEELVLK  175 (210)
Q Consensus       164 ~i~~~~~~l~~~  175 (210)
                      |++++|+++...
T Consensus       149 gv~~l~~~I~~~  160 (435)
T PRK00093        149 GIGDLLDAILEE  160 (435)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999873

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.86  E-value=1.5e-20  Score=136.06  Aligned_cols=148  Identities=19%  Similarity=0.192  Sum_probs=99.4

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc----------cccc
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER----------FRTL   78 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~   78 (210)
                      +....++|+++|++|+|||||+++|++..+ ....++.+.+.....+..++   .+.+||+||...          +...
T Consensus        14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~   90 (179)
T TIGR03598        14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL   90 (179)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence            346779999999999999999999998763 33444555555444444432   589999999532          2222


Q ss_pred             hhhccc---CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHHhC--
Q 028329           79 TSSYYR---GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGINFAREYG--  151 (210)
Q Consensus        79 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~--  151 (210)
                      ...+++   .+|++++|+|++++.+.....  +...+..    .++|+++++||+|+.....  ...++++..+...+  
T Consensus        91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~--~~~~~~~----~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~  164 (179)
T TIGR03598        91 IEEYLEKRENLKGVVLLMDIRHPLKELDLE--MLEWLRE----RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADD  164 (179)
T ss_pred             HHHHHHhChhhcEEEEEecCCCCCCHHHHH--HHHHHHH----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCC
Confidence            233443   358999999998765544442  3333332    4689999999999864322  22344445555543  


Q ss_pred             CcEEEEccCCCCCHH
Q 028329          152 CLFIECSAKTRVNVQ  166 (210)
Q Consensus       152 ~~~~~~sa~~~~~i~  166 (210)
                      .+++++||++|+|++
T Consensus       165 ~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       165 PSVQLFSSLKKTGID  179 (179)
T ss_pred             CceEEEECCCCCCCC
Confidence            479999999999873

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.85  E-value=2.6e-20  Score=152.39  Aligned_cols=161  Identities=24%  Similarity=0.163  Sum_probs=110.6

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc-----------hh
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL-----------TS   80 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----------~~   80 (210)
                      ...++|+++|.+|+|||||+++|++.......+.++++.......+......+.+|||||.......           ..
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~  250 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL  250 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence            3579999999999999999999998765444455555555444433333456789999995332211           12


Q ss_pred             hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHH-HHHHH----hCCcEE
Q 028329           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGI-NFARE----YGCLFI  155 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~-~~~~~----~~~~~~  155 (210)
                      ..+..+|++++|+|++++.+.....  +...+.    ..++|+++++||+|+.....  .++.. .+...    ..++++
T Consensus       251 ~~~~~ad~~ilViD~~~~~~~~~~~--i~~~~~----~~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~  322 (435)
T PRK00093        251 KAIERADVVLLVIDATEGITEQDLR--IAGLAL----EAGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIV  322 (435)
T ss_pred             HHHHHCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEE
Confidence            3567899999999999887665443  333332    24689999999999863321  11111 11111    246899


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHcCC
Q 028329          156 ECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       156 ~~sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      ++||+++.|++++|+.+.+...+..
T Consensus       323 ~~SA~~~~gv~~l~~~i~~~~~~~~  347 (435)
T PRK00093        323 FISALTGQGVDKLLEAIDEAYENAN  347 (435)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHc
Confidence            9999999999999999988765544

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.85  E-value=3.4e-20  Score=157.06  Aligned_cols=157  Identities=17%  Similarity=0.190  Sum_probs=112.2

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      ..+..+|+++|++++|||||+++|....+.....   +.....+...+..++....+.||||||+..|..++...+..+|
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD  320 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD  320 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence            3467899999999999999999999876653221   2222233333444455688999999999999999988899999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-------HHhC--CcEEEEc
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-------REYG--CLFIECS  158 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-------~~~~--~~~~~~s  158 (210)
                      ++|+|+|+++......... |. .+    ...++|++|++||+|++...   .+.+....       ..++  ++++++|
T Consensus       321 iaILVVDA~dGv~~QT~E~-I~-~~----k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VS  391 (742)
T CHL00189        321 IAILIIAADDGVKPQTIEA-IN-YI----QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPIS  391 (742)
T ss_pred             EEEEEEECcCCCChhhHHH-HH-HH----HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEE
Confidence            9999999987543322221 21 12    23568999999999986532   12222211       2233  6799999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 028329          159 AKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       159 a~~~~~i~~~~~~l~~~~  176 (210)
                      |++|.|++++|+++....
T Consensus       392 AktG~GIdeLle~I~~l~  409 (742)
T CHL00189        392 ASQGTNIDKLLETILLLA  409 (742)
T ss_pred             CCCCCCHHHHHHhhhhhh
Confidence            999999999999988754

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.85  E-value=2.7e-20  Score=159.81  Aligned_cols=156  Identities=18%  Similarity=0.136  Sum_probs=109.7

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccchhhcc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER--------FRTLTSSYY   83 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~   83 (210)
                      ....+|+++|.+|||||||+|+|++.......+.++.+..............+.+|||||...        +.......+
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  352 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV  352 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence            345789999999999999999999877655555666665554443333345789999999653        223344567


Q ss_pred             cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCC
Q 028329           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTR  162 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~  162 (210)
                      ..+|++++|+|+++.-.  .....|...++.    .++|+++|+||+|+.....    ....+ ..++. ..+++||++|
T Consensus       353 ~~aD~iL~VvDa~~~~~--~~d~~i~~~Lr~----~~~pvIlV~NK~D~~~~~~----~~~~~-~~lg~~~~~~iSA~~g  421 (712)
T PRK09518        353 SLADAVVFVVDGQVGLT--STDERIVRMLRR----AGKPVVLAVNKIDDQASEY----DAAEF-WKLGLGEPYPISAMHG  421 (712)
T ss_pred             HhCCEEEEEEECCCCCC--HHHHHHHHHHHh----cCCCEEEEEECcccccchh----hHHHH-HHcCCCCeEEEECCCC
Confidence            89999999999986432  222225555543    5789999999999854311    11121 22343 3678999999


Q ss_pred             CCHHHHHHHHHHHHHc
Q 028329          163 VNVQQCFEELVLKILD  178 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~~  178 (210)
                      .|++++|+++.+.+.+
T Consensus       422 ~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        422 RGVGDLLDEALDSLKV  437 (712)
T ss_pred             CCchHHHHHHHHhccc
Confidence            9999999999998854

>cd00880 Era_like Era (E

Probab=99.85  E-value=2.3e-20  Score=131.83  Aligned_cols=151  Identities=23%  Similarity=0.178  Sum_probs=102.9

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEEC-CeEEEEEEEeCCCcccccc-------chhhcccCccEEE
Q 028329           19 MIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRT-------LTSSYYRGAQGII   90 (210)
Q Consensus        19 v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~d~~i   90 (210)
                      ++|++|+|||||++++++..........+.+......... .....+.+||+||......       .....+..+|+++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il   80 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL   80 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence            5799999999999999987654333322222222222221 1156799999999765543       3334678899999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH---HHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK---EGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~sa~~~~~i~~  167 (210)
                      +|+|+++..+.....  +....    ...+.|+++++||.|+.........   .........+.+++++|++++.|+.+
T Consensus        81 ~v~~~~~~~~~~~~~--~~~~~----~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~  154 (163)
T cd00880          81 FVVDADLRADEEEEK--LLELL----RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDE  154 (163)
T ss_pred             EEEeCCCCCCHHHHH--HHHHH----HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence            999999987766554  22222    2357899999999998654433222   11223333467899999999999999


Q ss_pred             HHHHHHHH
Q 028329          168 CFEELVLK  175 (210)
Q Consensus       168 ~~~~l~~~  175 (210)
                      +++++.+.
T Consensus       155 l~~~l~~~  162 (163)
T cd00880         155 LREALIEA  162 (163)
T ss_pred             HHHHHHhh
Confidence            99998865

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.85  E-value=4.6e-20  Score=154.52  Aligned_cols=155  Identities=21%  Similarity=0.254  Sum_probs=110.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCC---CCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDN---FEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      +.|+++|++++|||||+++|++..   +++.+ ...+.++....+..++  ..+.+||+||++.+.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            468999999999999999999643   22222 2333333333344444  78999999999998888888889999999


Q ss_pred             EEEeCCCc---ccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCcee--cHHHHHHHHHHh----CCcEEEEccC
Q 028329           91 MVYDVTRR---DTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV--TKKEGINFAREY----GCLFIECSAK  160 (210)
Q Consensus        91 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~sa~  160 (210)
                      +|+|+++.   .+.+.+     ..+..    .++| ++||+||+|+......  ..+++..+....    +++++++||+
T Consensus        79 LVVDa~~G~~~qT~ehl-----~il~~----lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~  149 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL-----AVLDL----LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK  149 (581)
T ss_pred             EEEECCCCCcHHHHHHH-----HHHHH----cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence            99999984   333222     22222    3566 9999999999654422  233445555544    4679999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCC
Q 028329          161 TRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~~  180 (210)
                      +|.|+++++.++...+....
T Consensus       150 tG~GI~eL~~~L~~l~~~~~  169 (581)
T TIGR00475       150 TGQGIGELKKELKNLLESLD  169 (581)
T ss_pred             CCCCchhHHHHHHHHHHhCC
Confidence            99999999999887775543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.84  E-value=8.4e-20  Score=155.96  Aligned_cols=154  Identities=19%  Similarity=0.244  Sum_probs=108.2

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ..+...|+++|+.++|||||+++|....+..... ....+.....+..+  ...+.||||||+..|..++...+..+|++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDia  364 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDIV  364 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCEE
Confidence            4678999999999999999999998776543221 22222222333333  35789999999999999888888999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH-------HHHHhC--CcEEEEccC
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN-------FAREYG--CLFIECSAK  160 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~sa~  160 (210)
                      |+|||+++...-..... | ..    ....++|+||++||+|++...   .+.+..       +...++  ++++++||+
T Consensus       365 ILVVdAddGv~~qT~e~-i-~~----a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAk  435 (787)
T PRK05306        365 VLVVAADDGVMPQTIEA-I-NH----AKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAK  435 (787)
T ss_pred             EEEEECCCCCCHhHHHH-H-HH----HHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCC
Confidence            99999988532222211 2 11    223568999999999996432   111111       122233  679999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 028329          161 TRVNVQQCFEELVLK  175 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~  175 (210)
                      +|.|++++|++|...
T Consensus       436 tG~GI~eLle~I~~~  450 (787)
T PRK05306        436 TGEGIDELLEAILLQ  450 (787)
T ss_pred             CCCCchHHHHhhhhh
Confidence            999999999998753

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.84  E-value=3e-20  Score=159.56  Aligned_cols=160  Identities=21%  Similarity=0.187  Sum_probs=108.4

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeE--EEEEEECCeEEEEEEEeCCCccc----------cccc-h
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFK--VKYVDVGGKKLKLAIWDTAGQER----------FRTL-T   79 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~----------~~~~-~   79 (210)
                      ..++|+++|.+|||||||+++|++.......+.++++..  ...+.+++.  .+.+|||||...          +... .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence            458999999999999999999998875333333333332  333445554  466999999532          1111 1


Q ss_pred             hhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-HHh----CCcE
Q 028329           80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-REY----GCLF  154 (210)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-~~~----~~~~  154 (210)
                      ...++.+|++++|+|+++..+...... + ..+.    ..++|+++|+||+|+......  +...... ...    ..++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i-~-~~~~----~~~~piIiV~NK~DL~~~~~~--~~~~~~~~~~l~~~~~~~i  598 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKV-M-SMAV----DAGRALVLVFNKWDLMDEFRR--QRLERLWKTEFDRVTWARR  598 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHH-H-HHHH----HcCCCEEEEEEchhcCChhHH--HHHHHHHHHhccCCCCCCE
Confidence            234678999999999999887776643 3 3332    246899999999999643221  1111111 111    2467


Q ss_pred             EEEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028329          155 IECSAKTRVNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       155 ~~~sa~~~~~i~~~~~~l~~~~~~~~~~  182 (210)
                      +++||++|.|++++|+.+.+.+.+....
T Consensus       599 i~iSAktg~gv~~L~~~i~~~~~~~~~~  626 (712)
T PRK09518        599 VNLSAKTGWHTNRLAPAMQEALESWDQR  626 (712)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999988765444

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.84  E-value=1.5e-19  Score=155.05  Aligned_cols=153  Identities=14%  Similarity=0.147  Sum_probs=116.3

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc----------hhhc-
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL----------TSSY-   82 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------~~~~-   82 (210)
                      .++|+++|+||||||||+|+|++... .....++.|+......+......+.+||+||...+...          ...+ 
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l   81 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI   81 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence            47899999999999999999997654 44556777777776666667778999999997665431          1122 


Q ss_pred             -ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCC
Q 028329           83 -YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT  161 (210)
Q Consensus        83 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  161 (210)
                       ...+|++++|+|+++.+...   . +...+.+    .++|+++++||+|+.+.+... .+...+.+.++++++++|+++
T Consensus        82 ~~~~aD~vI~VvDat~ler~l---~-l~~ql~e----~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~  152 (772)
T PRK09554         82 LSGDADLLINVVDASNLERNL---Y-LTLQLLE----LGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTR  152 (772)
T ss_pred             hccCCCEEEEEecCCcchhhH---H-HHHHHHH----cCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeec
Confidence             24789999999998865432   2 3333332    468999999999986555443 345677788899999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028329          162 RVNVQQCFEELVLKI  176 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~  176 (210)
                      +.|++++++.+.+..
T Consensus       153 g~GIdeL~~~I~~~~  167 (772)
T PRK09554        153 GRGIEALKLAIDRHQ  167 (772)
T ss_pred             CCCHHHHHHHHHHhh
Confidence            999999999988765

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.84  E-value=2.9e-20  Score=146.80  Aligned_cols=152  Identities=21%  Similarity=0.149  Sum_probs=114.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc---------cchhhcccC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR---------TLTSSYYRG   85 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~~~   85 (210)
                      ..|+++|.||||||||+|||++...+.+...+|.|..............+.++||+|.+...         ......+..
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e   83 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE   83 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence            57999999999999999999999988888888888776655554455568999999955322         234456788


Q ss_pred             ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCCC
Q 028329           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVN  164 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~  164 (210)
                      ||++++|+|....-+-..  ......++    ..++|+++|+||+|-.     ..++....+..+|+ .++.+||.+|.|
T Consensus        84 ADvilfvVD~~~Git~~D--~~ia~~Lr----~~~kpviLvvNK~D~~-----~~e~~~~efyslG~g~~~~ISA~Hg~G  152 (444)
T COG1160          84 ADVILFVVDGREGITPAD--EEIAKILR----RSKKPVILVVNKIDNL-----KAEELAYEFYSLGFGEPVPISAEHGRG  152 (444)
T ss_pred             CCEEEEEEeCCCCCCHHH--HHHHHHHH----hcCCCEEEEEEcccCc-----hhhhhHHHHHhcCCCCceEeehhhccC
Confidence            999999999987433211  11333333    2468999999999965     22233344556777 499999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028329          165 VQQCFEELVLKIL  177 (210)
Q Consensus       165 i~~~~~~l~~~~~  177 (210)
                      +.+++++++..+.
T Consensus       153 i~dLld~v~~~l~  165 (444)
T COG1160         153 IGDLLDAVLELLP  165 (444)
T ss_pred             HHHHHHHHHhhcC
Confidence            9999999999984

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.84  E-value=3.4e-20  Score=135.28  Aligned_cols=158  Identities=21%  Similarity=0.205  Sum_probs=106.4

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-----------------CCceeeeEEEEEEEC--CeEEEEEEEeCCCcc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-----------------PTIGVDFKVKYVDVG--GKKLKLAIWDTAGQE   73 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~   73 (210)
                      ..++|+++|+.++|||||+.+|.........                 ...+.+.........  .....+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4689999999999999999999854321110                 011222222222222  456789999999999


Q ss_pred             ccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee-cHHHHH-HHHHHh-
Q 028329           74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-TKKEGI-NFAREY-  150 (210)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~-~~~~~~-  150 (210)
                      .+.......+..+|++|+|+|+.+....... . .+..+.    ..++|++|++||+|+...+.. ..++.. .+.+.. 
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~-~-~l~~~~----~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~  155 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQTE-E-HLKILR----ELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG  155 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHHH-H-HHHHHH----HTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             ceeecccceecccccceeeeecccccccccc-c-cccccc----ccccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence            8888888889999999999999977443222 2 333333    246889999999998722111 111122 222222 


Q ss_pred             -----CCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329          151 -----GCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       151 -----~~~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                           .++++.+||.+|.|++++++.|.+.+
T Consensus       156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  156 ENGEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             cCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence                 35799999999999999999998865

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=7.3e-21  Score=130.94  Aligned_cols=164  Identities=27%  Similarity=0.369  Sum_probs=122.6

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCC---CCCCCC---CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhccc
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDN---FEELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR   84 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~   84 (210)
                      ....+.|+++|.-++|||||+..+....   +....+   ++......-.+.++  ...+.+||.+|++..+++|..+|.
T Consensus        14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~   91 (197)
T KOG0076|consen   14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC--NAPLSFWDLGGQESLRSLWKKYYW   91 (197)
T ss_pred             hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec--cceeEEEEcCChHHHHHHHHHHHH
Confidence            4456889999999999999998876332   111111   11111222223333  567999999999999999999999


Q ss_pred             CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH---H---hCCcEEEEc
Q 028329           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR---E---YGCLFIECS  158 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~---~---~~~~~~~~s  158 (210)
                      .++++++++|+++++.|+.....+...+.. -.-.++|+++.+||.|+....  ...++...+.   .   ...++.++|
T Consensus        92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~-E~leg~p~L~lankqd~q~~~--~~~El~~~~~~~e~~~~rd~~~~pvS  168 (197)
T KOG0076|consen   92 LAHGIIYVIDATDRERFEESKTAFEKVVEN-EKLEGAPVLVLANKQDLQNAM--EAAELDGVFGLAELIPRRDNPFQPVS  168 (197)
T ss_pred             HhceeEEeecCCCHHHHHHHHHHHHHHHHH-HHhcCCchhhhcchhhhhhhh--hHHHHHHHhhhhhhcCCccCccccch
Confidence            999999999999999999998866555544 455689999999999986443  2333333332   2   235699999


Q ss_pred             cCCCCCHHHHHHHHHHHHHcC
Q 028329          159 AKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       159 a~~~~~i~~~~~~l~~~~~~~  179 (210)
                      |.+|+||++...|+...+.++
T Consensus       169 al~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  169 ALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhcccHHHHHHHHHHHHhhc
Confidence            999999999999999999777

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.84  E-value=1.2e-19  Score=152.30  Aligned_cols=159  Identities=20%  Similarity=0.237  Sum_probs=113.7

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCC-----------CC---CCCceeeeEEEEEEE-----CCeEEEEEEEeCCCcc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFE-----------EL---SPTIGVDFKVKYVDV-----GGKKLKLAIWDTAGQE   73 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~-----------~~---~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~   73 (210)
                      ..-+|+++|+.++|||||+.+|+.....           ..   ....+.++....+.+     ++..+.+.||||||+.
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            3458999999999999999999753210           00   012344443322222     5567899999999999


Q ss_pred             ccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc
Q 028329           74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL  153 (210)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  153 (210)
                      .+...+...+..+|++++|+|+++......... |.....     .++|+++|+||+|+.....  ......+....++.
T Consensus        86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~-~~~~~~-----~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~  157 (600)
T PRK05433         86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLALE-----NDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGID  157 (600)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHHH-----CCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCC
Confidence            999889999999999999999998766555544 433322     3688999999999864321  11122333344554


Q ss_pred             ---EEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329          154 ---FIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       154 ---~~~~sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                         ++.+||++|.|+++++++|.+.+...
T Consensus       158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        158 ASDAVLVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             cceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence               89999999999999999999887544

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.83  E-value=9.1e-20  Score=152.93  Aligned_cols=144  Identities=18%  Similarity=0.221  Sum_probs=103.3

Q ss_pred             cCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE--EEEEECCeEEEEEEEeCCCccccccc------hhhcc--cCccEEE
Q 028329           21 GDSGVGKSSLLLSFTSDNFEELSPTIGVDFKV--KYVDVGGKKLKLAIWDTAGQERFRTL------TSSYY--RGAQGII   90 (210)
Q Consensus        21 G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~--~~~d~~i   90 (210)
                      |++|||||||+|+|++... ...+.++.+...  ..+.+++  ..+.+||+||...+...      ...++  ..+|+++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI   77 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVV   77 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEE
Confidence            8999999999999998765 233344444443  3344444  45789999998776543      22222  4789999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      +|+|+++.+..   .. +...+.    ..++|+++++||+|+.+.+.+. .+...+.+..+++++++||+++.|++++++
T Consensus        78 ~VvDat~ler~---l~-l~~ql~----~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~  148 (591)
T TIGR00437        78 NVVDASNLERN---LY-LTLQLL----ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKD  148 (591)
T ss_pred             EEecCCcchhh---HH-HHHHHH----hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence            99999875432   22 222222    2468999999999986554443 345677788899999999999999999999


Q ss_pred             HHHHHH
Q 028329          171 ELVLKI  176 (210)
Q Consensus       171 ~l~~~~  176 (210)
                      ++.+..
T Consensus       149 ~i~~~~  154 (591)
T TIGR00437       149 AIRKAI  154 (591)
T ss_pred             HHHHHh
Confidence            998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=5.4e-20  Score=128.42  Aligned_cols=171  Identities=32%  Similarity=0.545  Sum_probs=141.2

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      .-.++++++|+.|.||||++++...+.|...++ +.+.+.......-+...+++..||+.|++.+..+...++=...+.+
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            456999999999999999999999999987666 8888887776655555799999999999999999988888899999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      ++||++..-++.++.. |...+.+.  ..++||+++|||.|.....  .......+.+..++.+++.|++.+.|.+.-|-
T Consensus        88 imFdVtsr~t~~n~~r-whrd~~rv--~~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl  162 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPR-WHRDLVRV--RENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFL  162 (216)
T ss_pred             EEeeeeehhhhhcchH-HHHHHHHH--hcCCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchH
Confidence            9999999999999998 55555443  4569999999999975433  12223444556678899999999999999999


Q ss_pred             HHHHHHHcCCCcccccc
Q 028329          171 ELVLKILDTPSLLAEGS  187 (210)
Q Consensus       171 ~l~~~~~~~~~~~~~~~  187 (210)
                      |+.+.+.....+..-+.
T Consensus       163 ~LarKl~G~p~Lefva~  179 (216)
T KOG0096|consen  163 WLARKLTGDPSLEFVAM  179 (216)
T ss_pred             HHhhhhcCCCCeEEEec
Confidence            99999998887764443

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.82  E-value=2.3e-19  Score=146.21  Aligned_cols=156  Identities=18%  Similarity=0.075  Sum_probs=105.0

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCC------------------------------CCCCceeeeEEEEEEECCe
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE------------------------------LSPTIGVDFKVKYVDVGGK   60 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~   60 (210)
                      ....++|+++|++++|||||+++|+......                              .....+.|.......+...
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            3456999999999999999999998432110                              0114566666666666667


Q ss_pred             EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce---
Q 028329           61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV---  137 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---  137 (210)
                      ...+.+||+||+..+.......+..+|++++|+|+++...+......+......   ....|++|++||+|+.....   
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~---~~~~~iivviNK~Dl~~~~~~~~  159 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART---LGINQLIVAINKMDAVNYDEKRY  159 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH---cCCCeEEEEEEccccccccHHHH
Confidence            788999999999877665556678899999999998732222221112222322   12246899999999964221   


Q ss_pred             -ecHHHHHHHHHHhC-----CcEEEEccCCCCCHHHHH
Q 028329          138 -VTKKEGINFAREYG-----CLFIECSAKTRVNVQQCF  169 (210)
Q Consensus       138 -~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~  169 (210)
                       ...+++..++...+     ++++++||++|.|+++..
T Consensus       160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence             12234455555554     469999999999998744

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.82  E-value=2.7e-19  Score=141.70  Aligned_cols=155  Identities=21%  Similarity=0.171  Sum_probs=120.7

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhhccc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSSYYR   84 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~   84 (210)
                      .-++++++|.||||||||+|.|++.+-+.+++.+|+|.......++-.++.+.+.||+|..+....        ....+.
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~  295 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIE  295 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHH
Confidence            469999999999999999999999999999999999999888888778888999999996544432        233577


Q ss_pred             CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCC
Q 028329           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVN  164 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  164 (210)
                      .||.+++|+|.+.+.+-....-  +.     ....+.|+++|.||.|+.........     ....+.+++.+|++++.|
T Consensus       296 ~ADlvL~v~D~~~~~~~~d~~~--~~-----~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~G  363 (454)
T COG0486         296 EADLVLFVLDASQPLDKEDLAL--IE-----LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEG  363 (454)
T ss_pred             hCCEEEEEEeCCCCCchhhHHH--HH-----hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccC
Confidence            8999999999998633333322  11     23456899999999999765442211     112244689999999999


Q ss_pred             HHHHHHHHHHHHHcC
Q 028329          165 VQQCFEELVLKILDT  179 (210)
Q Consensus       165 i~~~~~~l~~~~~~~  179 (210)
                      ++.+.+.|.+.+...
T Consensus       364 l~~L~~~i~~~~~~~  378 (454)
T COG0486         364 LDALREAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999988887665

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.82  E-value=3.5e-19  Score=140.68  Aligned_cols=164  Identities=23%  Similarity=0.144  Sum_probs=121.1

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc----------ccc-chhh
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER----------FRT-LTSS   81 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~-~~~~   81 (210)
                      ..+||+++|.||+|||||+|+|++.......+..|+|.......+....-.+.++||+|...          |.. -...
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~  256 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK  256 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence            67999999999999999999999999888888889888888877765566688889999322          211 1233


Q ss_pred             cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-----hCCcEEE
Q 028329           82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-----YGCLFIE  156 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~  156 (210)
                      .+..+|++++|+|++.+-+.+...  ...    +....+.+++|++||+|+.++.....++.+.....     -.++++.
T Consensus       257 aI~~a~vvllviDa~~~~~~qD~~--ia~----~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~  330 (444)
T COG1160         257 AIERADVVLLVIDATEGISEQDLR--IAG----LIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF  330 (444)
T ss_pred             HHhhcCEEEEEEECCCCchHHHHH--HHH----HHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence            467899999999999886544332  222    23356789999999999866533333333222222     1357999


Q ss_pred             EccCCCCCHHHHHHHHHHHHHcCCCc
Q 028329          157 CSAKTRVNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       157 ~sa~~~~~i~~~~~~l~~~~~~~~~~  182 (210)
                      +||+++.++..+|+.+..........
T Consensus       331 iSA~~~~~i~~l~~~i~~~~~~~~~r  356 (444)
T COG1160         331 ISALTGQGLDKLFEAIKEIYECATRR  356 (444)
T ss_pred             EEecCCCChHHHHHHHHHHHHHhccc
Confidence            99999999999999988877554443

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.82  E-value=9.7e-22  Score=136.70  Aligned_cols=177  Identities=38%  Similarity=0.576  Sum_probs=145.1

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCe-EEEEEEEeCCCccccccchhhcccCccE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGK-KLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      ++..++++|+|+-++|||++++++....+...+. +.+..+.......+.. .+++.|||..|++.+..+..-+++.+.+
T Consensus        22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~  101 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG  101 (229)
T ss_pred             hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence            4667999999999999999999999888776665 8887776555554443 4789999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhh---ccCCCCcEEEEEeCCCCCCCcee-cHHHHHHHHHHhCCc-EEEEccCCCC
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLY---STNQDCIKLLVGNKVDKESERVV-TKKEGINFAREYGCL-FIECSAKTRV  163 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~-~~~~sa~~~~  163 (210)
                      .++|||.++..+|+.+.. |.+.+...   .+..++|+++.+||+|+...... .......+.+++|+. .+++|++.+.
T Consensus       102 ~~iVfdvt~s~tfe~~sk-wkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk  180 (229)
T KOG4423|consen  102 AFIVFDVTRSLTFEPVSK-WKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK  180 (229)
T ss_pred             eEEEEEccccccccHHHH-HHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence            999999999999999988 88877543   44567899999999998544332 245667778888885 9999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCccccccc
Q 028329          164 NVQQCFEELVLKILDTPSLLAEGSK  188 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~~~~~~~~~~  188 (210)
                      +++|.-..+.+.++-+..+......
T Consensus       181 ni~Ea~r~lVe~~lvnd~q~~~s~~  205 (229)
T KOG4423|consen  181 NIPEAQRELVEKILVNDEQPIKSSA  205 (229)
T ss_pred             ChhHHHHHHHHHHHhhccCCccccc
Confidence            9999999999999888755444333

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.81  E-value=1.6e-18  Score=130.24  Aligned_cols=151  Identities=23%  Similarity=0.164  Sum_probs=97.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc-------cchhhcccCcc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-------TLTSSYYRGAQ   87 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~d   87 (210)
                      +|+++|++|||||||+++|++.... ..++....+...-.+.+.  ...+.+||+||.....       ......++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYK--GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEEC--CeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            7899999999999999999976532 222211112222223333  4678999999964332       12345688999


Q ss_pred             EEEEEEeCCCccc-HHHHHHHHHHH-----------------------------------------Hhhh----------
Q 028329           88 GIIMVYDVTRRDT-FTNLSDVWAKE-----------------------------------------IDLY----------  115 (210)
Q Consensus        88 ~~i~v~d~~~~~s-~~~~~~~~~~~-----------------------------------------~~~~----------  115 (210)
                      ++++|+|+++.+. ...+.. .++.                                         ++.+          
T Consensus        80 ~il~V~D~t~~~~~~~~~~~-~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~  158 (233)
T cd01896          80 LILMVLDATKPEGHREILER-ELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR  158 (233)
T ss_pred             EEEEEecCCcchhHHHHHHH-HHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence            9999999987653 222222 2211                                         1110          


Q ss_pred             -------------ccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329          116 -------------STNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       116 -------------~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                                   .+...+|+++|+||+|+..     .++...++.  ...++++||+++.|++++|+.+.+.+
T Consensus       159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             cCCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                         1123469999999999853     233333333  34589999999999999999998765

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.81  E-value=3.1e-19  Score=132.18  Aligned_cols=148  Identities=22%  Similarity=0.184  Sum_probs=96.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCC------------------------------CCceeeeEEEEEEECCeEEEEE
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELS------------------------------PTIGVDFKVKYVDVGGKKLKLA   65 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~   65 (210)
                      ||+++|++|+|||||+++|+........                              ...+.+.......+......+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            6899999999999999999754321110                              0133444444444444556789


Q ss_pred             EEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee----cHH
Q 028329           66 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV----TKK  141 (210)
Q Consensus        66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~  141 (210)
                      +|||||+..+.......+..+|++++|+|+++...-.. .. ....+..   ....++++|+||+|+......    ...
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~-~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~i~~  155 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RR-HSYILSL---LGIRHVVVAVNKMDLVDYSEEVFEEIVA  155 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HH-HHHHHHH---cCCCcEEEEEEchhcccCCHHHHHHHHH
Confidence            99999998876666667889999999999987642221 11 2222222   112457889999998643211    122


Q ss_pred             HHHHHHHHhCC---cEEEEccCCCCCHHHH
Q 028329          142 EGINFAREYGC---LFIECSAKTRVNVQQC  168 (210)
Q Consensus       142 ~~~~~~~~~~~---~~~~~sa~~~~~i~~~  168 (210)
                      +...+....+.   +++.+||+++.|+.+.
T Consensus       156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         156 DYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            34444555553   4899999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.81  E-value=8.3e-19  Score=142.91  Aligned_cols=156  Identities=20%  Similarity=0.109  Sum_probs=105.2

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCC--CC----------------------------CCCCCceeeeEEEEEEECCe
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDN--FE----------------------------ELSPTIGVDFKVKYVDVGGK   60 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~--~~----------------------------~~~~~~~~~~~~~~~~~~~~   60 (210)
                      ....++|+++|+.++|||||+.+|+...  ..                            ......+.+.......+...
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            3456999999999999999999997521  11                            00012344555555556666


Q ss_pred             EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHH-HHHHHhhhccCCCCcEEEEEeCCCCCCCce--
Q 028329           61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDV-WAKEIDLYSTNQDCIKLLVGNKVDKESERV--  137 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~~piivv~nK~D~~~~~~--  137 (210)
                      ...+.+||+||+..+.......+..+|++++|+|+++.+++...... +......   ....|++|++||+|+.....  
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~---~~~~~iIVviNK~Dl~~~~~~~  160 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART---LGINQLIVAINKMDSVNYDEEE  160 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH---cCCCeEEEEEEChhccCccHHH
Confidence            78899999999988776666667889999999999988543222111 1122221   12357899999999964221  


Q ss_pred             --ecHHHHHHHHHHhC-----CcEEEEccCCCCCHHHHH
Q 028329          138 --VTKKEGINFAREYG-----CLFIECSAKTRVNVQQCF  169 (210)
Q Consensus       138 --~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~  169 (210)
                        ....++..++...+     ++++++||+++.|+.+.+
T Consensus       161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence              12344555666555     569999999999998744

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.80  E-value=1.3e-18  Score=118.83  Aligned_cols=136  Identities=20%  Similarity=0.254  Sum_probs=97.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc----cccccchhhcccCccEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ----ERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----~~~~~~~~~~~~~~d~~i   90 (210)
                      -||+++|+.|||||||+++|.+... .+..|....+.            =.++||||.    ..+..-.......||.++
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            3899999999999999999998654 22223332222            123699992    333333344456899999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc-EEEEccCCCCCHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCF  169 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~  169 (210)
                      +|.|++++.+.-.-.  +.       ...+.|+|-|+||+|++. .....+.++.+...-|+. +|++|+.+++|++++.
T Consensus        69 ll~dat~~~~~~pP~--fa-------~~f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~  138 (143)
T PF10662_consen   69 LLQDATEPRSVFPPG--FA-------SMFNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELK  138 (143)
T ss_pred             EEecCCCCCccCCch--hh-------cccCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHH
Confidence            999999876532221  11       123579999999999973 234556778888888885 8999999999999999


Q ss_pred             HHHH
Q 028329          170 EELV  173 (210)
Q Consensus       170 ~~l~  173 (210)
                      ++|.
T Consensus       139 ~~L~  142 (143)
T PF10662_consen  139 DYLE  142 (143)
T ss_pred             HHHh
Confidence            9874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.80  E-value=1.7e-18  Score=139.99  Aligned_cols=161  Identities=17%  Similarity=0.134  Sum_probs=104.3

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEE--------------------EEEECC------eEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVK--------------------YVDVGG------KKLKL   64 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~--~~~~~~~~~--------------------~~~~~~------~~~~~   64 (210)
                      ..++|+++|++++|||||+++|.+........  ..+.+...-                    ....++      ....+
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            46899999999999999999997542211111  111111110                    000011      13578


Q ss_pred             EEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHH
Q 028329           65 AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKE  142 (210)
Q Consensus        65 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~--~~~~  142 (210)
                      .+||+||++.+...+...+..+|++++|+|+++......... .+..+..   ....|+++++||+|+......  ..++
T Consensus        83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e-~l~~l~~---~gi~~iIVvvNK~Dl~~~~~~~~~~~~  158 (406)
T TIGR03680        83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKE-HLMALEI---IGIKNIVIVQNKIDLVSKEKALENYEE  158 (406)
T ss_pred             EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHH-HHHHHHH---cCCCeEEEEEEccccCCHHHHHHHHHH
Confidence            999999999998888888888999999999996431112222 2222222   122468999999998643221  1233


Q ss_pred             HHHHHHHh---CCcEEEEccCCCCCHHHHHHHHHHHHH
Q 028329          143 GINFAREY---GCLFIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       143 ~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~~  177 (210)
                      +..+....   +++++++||+++.|+++++++|...+.
T Consensus       159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            34443332   567999999999999999999988664

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.79  E-value=1.8e-18  Score=144.34  Aligned_cols=154  Identities=19%  Similarity=0.151  Sum_probs=101.1

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----CceeeeEEEEEE------------ECCeEEEEEEEeCCCccccc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-----TIGVDFKVKYVD------------VGGKKLKLAIWDTAGQERFR   76 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-----~~~~~~~~~~~~------------~~~~~~~~~l~D~~g~~~~~   76 (210)
                      ..-|+++|++++|||||+++|.+..+....+     +.+.+.......            +......+.+|||||++.+.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            4569999999999999999999876643222     112211111100            00011238899999999999


Q ss_pred             cchhhcccCccEEEEEEeCCCc---ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee------------cHH
Q 028329           77 TLTSSYYRGAQGIIMVYDVTRR---DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV------------TKK  141 (210)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~------------~~~  141 (210)
                      .++...+..+|++++|+|+++.   .+++.+.     .+.    ..++|+++++||+|+...+..            ...
T Consensus        84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-----~l~----~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~  154 (590)
T TIGR00491        84 NLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILR----MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI  154 (590)
T ss_pred             HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH-----HHH----HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence            9888889999999999999974   3333322     222    236899999999998532110            000


Q ss_pred             HH------------HHHHH------------Hh--CCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329          142 EG------------INFAR------------EY--GCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       142 ~~------------~~~~~------------~~--~~~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                      .+            .++..            .+  .++++++||++|+|+++++.++....
T Consensus       155 ~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       155 QVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence            00            01110            11  35799999999999999999887544

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.79  E-value=1.8e-18  Score=129.65  Aligned_cols=178  Identities=17%  Similarity=0.139  Sum_probs=123.4

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc---------cc--
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF---------RT--   77 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~~--   77 (210)
                      ++..+.+.|+++|.||+|||||.|.+.+.+....+.-..+|.......+.....++.|+||||...-         .+  
T Consensus        67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l  146 (379)
T KOG1423|consen   67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL  146 (379)
T ss_pred             hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence            4456789999999999999999999999998887776666666666666667789999999992111         11  


Q ss_pred             -chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee-------------c--HH
Q 028329           78 -LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-------------T--KK  141 (210)
Q Consensus        78 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-------------~--~~  141 (210)
                       .....+..+|++++|+|+++.-......  .+..+..+   ..+|-++|.||.|.......             .  ..
T Consensus       147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~--vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl  221 (379)
T KOG1423|consen  147 QNPRDAAQNADCVVVVVDASATRTPLHPR--VLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKL  221 (379)
T ss_pred             hCHHHHHhhCCEEEEEEeccCCcCccChH--HHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhh
Confidence             1223456799999999999633222221  33334443   46888999999997433211             1  11


Q ss_pred             HHHHHHHHh----------C---C-cEEEEccCCCCCHHHHHHHHHHHHHcCCCcccccccCcc
Q 028329          142 EGINFAREY----------G---C-LFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLK  191 (210)
Q Consensus       142 ~~~~~~~~~----------~---~-~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~  191 (210)
                      +..+.+...          |   + .+|.+||++|+|++++-++|..........+.++.-...
T Consensus       222 ~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~  285 (379)
T KOG1423|consen  222 EVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEE  285 (379)
T ss_pred             hHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCccccccc
Confidence            111111111          1   2 289999999999999999999999999888877654433

>PRK10218 GTP-binding protein; Provisional

Probab=99.79  E-value=6.5e-18  Score=141.46  Aligned_cols=161  Identities=16%  Similarity=0.169  Sum_probs=115.9

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhc--CCCCCC-------------CCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTS--DNFEEL-------------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT   77 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   77 (210)
                      ...+|+++|+.++|||||+++|+.  +.+...             ..+.+.++......+......+.+||+||+..+..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            346899999999999999999986  323221             12456666666666677788999999999999999


Q ss_pred             chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHH-------
Q 028329           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VTKKEGINFARE-------  149 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~-------  149 (210)
                      .+..+++.+|++++|+|+.+......... |.. ..    ..++|.++++||+|++..+. ...+++..++..       
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~~-l~~-a~----~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~  157 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQTRFV-TKK-AF----AYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ  157 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHHHHH-HHH-HH----HcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence            99999999999999999987643322221 322 22    24688899999999864432 122233333322       


Q ss_pred             hCCcEEEEccCCCC----------CHHHHHHHHHHHHHcC
Q 028329          150 YGCLFIECSAKTRV----------NVQQCFEELVLKILDT  179 (210)
Q Consensus       150 ~~~~~~~~sa~~~~----------~i~~~~~~l~~~~~~~  179 (210)
                      ..++++.+||++|.          ++..+++.+++.+...
T Consensus       158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence            34679999999998          5888888888877544

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.79  E-value=4e-18  Score=121.63  Aligned_cols=151  Identities=21%  Similarity=0.212  Sum_probs=97.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc----------cccchhhccc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER----------FRTLTSSYYR   84 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~~~   84 (210)
                      .|+++|++|+|||||++.+.++.+ +...++.+.+.....+..++   .+.+||+||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            378999999999999999995444 33444555555444444433   789999999533          2223333333


Q ss_pred             ---CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHH--HhCCcEEEE
Q 028329           85 ---GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGINFAR--EYGCLFIEC  157 (210)
Q Consensus        85 ---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~--~~~~~~~~~  157 (210)
                         ..+++++++|..+..+.....  ....+..    ...|+++++||+|+......  ..........  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~--~~~~l~~----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLE--MLDWLEE----LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHH--HHHHHHH----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               467899999998764322211  2233332    24789999999998533221  1122222222  234579999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 028329          158 SAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       158 sa~~~~~i~~~~~~l~~~  175 (210)
                      |++++.++.+++++|.+.
T Consensus       152 Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         152 SSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999998765

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.79  E-value=1.1e-17  Score=122.32  Aligned_cols=147  Identities=16%  Similarity=0.107  Sum_probs=99.5

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCC---------------CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNF---------------EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL   78 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   78 (210)
                      .++|+++|+.++|||||+++|+....               .......+.+.......+......+.++||||+..+...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            47899999999999999999975310               000114455555555556566678899999999888777


Q ss_pred             hhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCcee---cHHHHHHHHHHhC---
Q 028329           79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV---TKKEGINFAREYG---  151 (210)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~---~~~~~~~~~~~~~---  151 (210)
                      ....+..+|++++|+|+.....-. ... .+..+..    .++| +|+++||+|+......   ..+++..+....+   
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~-~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~  155 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQ-TRE-HLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG  155 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHH-HHH-HHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence            777888999999999998753221 122 2333332    3455 7899999998532221   1223444444443   


Q ss_pred             --CcEEEEccCCCCCHH
Q 028329          152 --CLFIECSAKTRVNVQ  166 (210)
Q Consensus       152 --~~~~~~sa~~~~~i~  166 (210)
                        ++++++||++|.++.
T Consensus       156 ~~v~iipiSa~~g~n~~  172 (195)
T cd01884         156 DNTPIVRGSALKALEGD  172 (195)
T ss_pred             cCCeEEEeeCccccCCC
Confidence              679999999999853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.78  E-value=4.6e-18  Score=137.47  Aligned_cols=164  Identities=18%  Similarity=0.187  Sum_probs=103.3

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEE----EEE----------E------C--C----eEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVK----YVD----------V------G--G----KKL   62 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~--~~~~~~~~~----~~~----------~------~--~----~~~   62 (210)
                      ....++|+++|+.++|||||+.+|.+........  ..+.+...-    .+.          +      +  +    ...
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR   85 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence            3456999999999999999999997532111110  222222211    000          0      0  0    135


Q ss_pred             EEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cH
Q 028329           63 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TK  140 (210)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~--~~  140 (210)
                      .+.+||+||+..+..........+|++++|+|++++........ .+..+..   ..-.|+++|+||+|+......  ..
T Consensus        86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-~l~~l~~---~~i~~iiVVlNK~Dl~~~~~~~~~~  161 (411)
T PRK04000         86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE-HLMALDI---IGIKNIVIVQNKIDLVSKERALENY  161 (411)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH-HHHHHHH---cCCCcEEEEEEeeccccchhHHHHH
Confidence            78999999998887666666677899999999996531111111 1122222   112468999999998654322  12


Q ss_pred             HHHHHHHHHh---CCcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329          141 KEGINFAREY---GCLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       141 ~~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      +++..++...   +.+++++||+++.|+++++++|...+..
T Consensus       162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            3334443322   4679999999999999999999887643

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.78  E-value=2.4e-17  Score=115.12  Aligned_cols=159  Identities=21%  Similarity=0.211  Sum_probs=115.6

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-----CC-CceeeeEEEEEEE----CCeEEEEEEEeCCCccccccch
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-----SP-TIGVDFKVKYVDV----GGKKLKLAIWDTAGQERFRTLT   79 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-----~~-~~~~~~~~~~~~~----~~~~~~~~l~D~~g~~~~~~~~   79 (210)
                      ......||++.|+.++||||+++.+........     .. .-+.+.....+.+    .+....+.|++||||..+.-.|
T Consensus         6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~   85 (187)
T COG2229           6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW   85 (187)
T ss_pred             ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence            345678999999999999999999986653111     11 1110001111111    1123578999999999999999


Q ss_pred             hhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh--CCcEEEE
Q 028329           80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY--GCLFIEC  157 (210)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~  157 (210)
                      ...++++.++|+++|.+++..+ +... ....+..   ...+|++|++||.|+...+  ..+.+.+.....  .+++++.
T Consensus        86 ~~l~~ga~gaivlVDss~~~~~-~a~~-ii~f~~~---~~~ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi~~  158 (187)
T COG2229          86 EILSRGAVGAIVLVDSSRPITF-HAEE-IIDFLTS---RNPIPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVIEI  158 (187)
T ss_pred             HHHhCCcceEEEEEecCCCcch-HHHH-HHHHHhh---ccCCCEEEEeeccccCCCC--CHHHHHHHHHhccCCCceeee
Confidence            9999999999999999999988 3333 3444443   2239999999999997554  455556555554  7889999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 028329          158 SAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       158 sa~~~~~i~~~~~~l~~~  175 (210)
                      +|.++++..+.++.+...
T Consensus       159 ~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         159 DATEGEGARDQLDVLLLK  176 (187)
T ss_pred             ecccchhHHHHHHHHHhh
Confidence            999999999999888766

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.78  E-value=8.8e-18  Score=140.77  Aligned_cols=158  Identities=18%  Similarity=0.222  Sum_probs=113.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC--CCCCC-------------CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchh
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD--NFEEL-------------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS   80 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~   80 (210)
                      +|+++|+.++|||||+.+|+..  .+...             ....+.++......+......+.+|||||+..|...+.
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            7999999999999999999853  22111             11334555555555555678899999999999998888


Q ss_pred             hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee-cHHHHHHHHHH-------hCC
Q 028329           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-TKKEGINFARE-------YGC  152 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~-------~~~  152 (210)
                      ..++.+|++++|+|+.+.. ...... |+..+..    .++|++|++||+|++..+.. ...+...++..       ..+
T Consensus        83 ~~l~~aD~alLVVDa~~G~-~~qT~~-~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~  156 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP-MPQTRF-VLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF  156 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC-cHHHHH-HHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence            9999999999999998753 233333 4444433    46889999999998654321 12333343322       356


Q ss_pred             cEEEEccCCCC----------CHHHHHHHHHHHHHcC
Q 028329          153 LFIECSAKTRV----------NVQQCFEELVLKILDT  179 (210)
Q Consensus       153 ~~~~~sa~~~~----------~i~~~~~~l~~~~~~~  179 (210)
                      +++.+||+++.          |+..+|+.+.+.+...
T Consensus       157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence            79999999995          7999999999887544

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.77  E-value=1.4e-18  Score=140.01  Aligned_cols=171  Identities=26%  Similarity=0.323  Sum_probs=127.3

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...+||+++|+.|+||||||-+|....|++.-|.....+. ....+.-..+...+.|++....-+......++.+|++++
T Consensus         7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~-IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l   85 (625)
T KOG1707|consen    7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRIL-IPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL   85 (625)
T ss_pred             ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccc-cCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence            4569999999999999999999999999776663322221 113344445668889998766656666778999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHH-HHHHHHHhC-C-cEEEEccCCCCCHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKE-GINFAREYG-C-LFIECSAKTRVNVQQ  167 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~-~~~~~~~~~-~-~~~~~sa~~~~~i~~  167 (210)
                      +|+.+++.+++.+..+|+.+++.... ..++|+|+||||.|.........+. ..-+...+. + ..++|||++..++.+
T Consensus        86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e  165 (625)
T KOG1707|consen   86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSE  165 (625)
T ss_pred             EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHh
Confidence            99999999999999999999987432 2579999999999985444332222 222222222 2 379999999999999


Q ss_pred             HHHHHHHHHHcCCCcc
Q 028329          168 CFEELVLKILDTPSLL  183 (210)
Q Consensus       168 ~~~~l~~~~~~~~~~~  183 (210)
                      +|-....++.-.-.-+
T Consensus       166 ~fYyaqKaVihPt~PL  181 (625)
T KOG1707|consen  166 LFYYAQKAVIHPTSPL  181 (625)
T ss_pred             hhhhhhheeeccCccc
Confidence            9999887776554443

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.77  E-value=2.6e-17  Score=117.43  Aligned_cols=160  Identities=19%  Similarity=0.211  Sum_probs=113.3

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCC-CCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc----------cccc
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDN-FEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE----------RFRT   77 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~   77 (210)
                      -+.+...-|+++|.+|||||||||+|++.+ .+..+.++|.|.....+.+++.   +.++|.||-.          .+..
T Consensus        19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~   95 (200)
T COG0218          19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKK   95 (200)
T ss_pred             CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHH
Confidence            445577899999999999999999999966 4777779999888887777665   7888999932          2223


Q ss_pred             chhhccc---CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC---
Q 028329           78 LTSSYYR---GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG---  151 (210)
Q Consensus        78 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~---  151 (210)
                      +...+++   +-.++++++|+..+..-...  ..++++..    .++|++|++||+|.......... ....+....   
T Consensus        96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~~----~~i~~~vv~tK~DKi~~~~~~k~-l~~v~~~l~~~~  168 (200)
T COG0218          96 LIEEYLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLLE----LGIPVIVVLTKADKLKKSERNKQ-LNKVAEELKKPP  168 (200)
T ss_pred             HHHHHHhhchhheEEEEEEECCCCCcHHHH--HHHHHHHH----cCCCeEEEEEccccCChhHHHHH-HHHHHHHhcCCC
Confidence            3334443   35788999999887554333  25555554    57999999999998654333221 122222222   


Q ss_pred             -Cc--EEEEccCCCCCHHHHHHHHHHHHHc
Q 028329          152 -CL--FIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       152 -~~--~~~~sa~~~~~i~~~~~~l~~~~~~  178 (210)
                       ..  ++.+|+..+.|++++...|.+.+..
T Consensus       169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         169 PDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             CccceEEEEecccccCHHHHHHHHHHHhhc
Confidence             22  7889999999999999988877643

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.77  E-value=1.3e-17  Score=139.66  Aligned_cols=156  Identities=21%  Similarity=0.188  Sum_probs=100.7

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----CceeeeEEEEEE--ECCeE-----E-----EEEEEeCCCccc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-----TIGVDFKVKYVD--VGGKK-----L-----KLAIWDTAGQER   74 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~-----~-----~~~l~D~~g~~~   74 (210)
                      .+...|+++|++++|||||+++|.+.......+     +.+.++......  ..+..     .     .+.+|||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            456789999999999999999998665433222     112111111100  00111     1     278999999999


Q ss_pred             cccchhhcccCccEEEEEEeCCC---cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec------------
Q 028329           75 FRTLTSSYYRGAQGIIMVYDVTR---RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT------------  139 (210)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~------------  139 (210)
                      |...+...+..+|++++|+|+++   +.+++.+.     .+.    ..++|+++++||+|+...+...            
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~----~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~  154 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILK----RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ  154 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHH----HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence            99888888889999999999997   44443332     222    2468999999999985221100            


Q ss_pred             HH-----------HHHHHHHHh---------------CCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329          140 KK-----------EGINFAREY---------------GCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       140 ~~-----------~~~~~~~~~---------------~~~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                      ..           +........               .++++++||.+|.|+++++..+...+
T Consensus       155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence            00           011111111               25689999999999999998886543

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.77  E-value=9.9e-18  Score=126.11  Aligned_cols=112  Identities=14%  Similarity=0.138  Sum_probs=80.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC--------------CCC---CCceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFE--------------ELS---PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL   78 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~--------------~~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   78 (210)
                      +|+++|++|+|||||+++|+.....              ...   ...+.++......+......+.+||+||+..+...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999999753211              000   12223333333444455678999999999998888


Q ss_pred             hhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329           79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~  133 (210)
                      +...++.+|++++|+|+++.... .... ++..+..    .++|+++++||+|+.
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~-~~~~~~~----~~~P~iivvNK~D~~  129 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRI-LWRLLRK----LNIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHH-HHHHHHH----cCCCEEEEEECcccc
Confidence            88889999999999999986543 2223 4444433    468999999999985

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.76  E-value=1.9e-17  Score=139.38  Aligned_cols=156  Identities=18%  Similarity=0.187  Sum_probs=102.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC---CCCCCCCceeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN---FEELSPTIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      -|.++|+.++|||||+++|++..   +.+.. ..+.|.......+ ......+.+||+||++.+.......+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~-~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEK-KRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcc-cCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            58899999999999999999643   22211 2233332221122 1112357899999999888777777889999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCcee--cHHHHHHHHHHhC---CcEEEEccCCCCCH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV--TKKEGINFAREYG---CLFIECSAKTRVNV  165 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~sa~~~~~i  165 (210)
                      |+|+++...-. ..+ .+..+..    .++| ++||+||+|+......  ..+++..+....+   .+++++||++|.|+
T Consensus        81 VVda~eg~~~q-T~e-hl~il~~----lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI  154 (614)
T PRK10512         81 VVACDDGVMAQ-TRE-HLAILQL----TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGI  154 (614)
T ss_pred             EEECCCCCcHH-HHH-HHHHHHH----cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCC
Confidence            99998743211 111 2222222    2344 5799999998643322  2234444444444   57999999999999


Q ss_pred             HHHHHHHHHHHHc
Q 028329          166 QQCFEELVLKILD  178 (210)
Q Consensus       166 ~~~~~~l~~~~~~  178 (210)
                      +++++.|......
T Consensus       155 ~~L~~~L~~~~~~  167 (614)
T PRK10512        155 DALREHLLQLPER  167 (614)
T ss_pred             HHHHHHHHHhhcc
Confidence            9999999876543

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.76  E-value=1.2e-17  Score=137.63  Aligned_cols=157  Identities=17%  Similarity=0.195  Sum_probs=118.8

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc------hhhc-c-cC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL------TSSY-Y-RG   85 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~-~-~~   85 (210)
                      ..+|+++|+||||||||.|+|++.. ......+|.|+...+.........+++.|+||--...+.      .+.+ + .+
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~   81 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK   81 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence            4569999999999999999999755 345567888888777777666666889999994333321      2222 2 35


Q ss_pred             ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCH
Q 028329           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNV  165 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  165 (210)
                      .|+++-|+|+++-+.-..+   .++.++     -+.|++++.|+.|..+++.+..+ ...+.+.+|+|+++++|++|.|+
T Consensus        82 ~D~ivnVvDAtnLeRnLyl---tlQLlE-----~g~p~ilaLNm~D~A~~~Gi~ID-~~~L~~~LGvPVv~tvA~~g~G~  152 (653)
T COG0370          82 PDLIVNVVDATNLERNLYL---TLQLLE-----LGIPMILALNMIDEAKKRGIRID-IEKLSKLLGVPVVPTVAKRGEGL  152 (653)
T ss_pred             CCEEEEEcccchHHHHHHH---HHHHHH-----cCCCeEEEeccHhhHHhcCCccc-HHHHHHHhCCCEEEEEeecCCCH
Confidence            7999999999987654443   333333     36889999999998766655443 47778889999999999999999


Q ss_pred             HHHHHHHHHHHHcCC
Q 028329          166 QQCFEELVLKILDTP  180 (210)
Q Consensus       166 ~~~~~~l~~~~~~~~  180 (210)
                      +++.+.+.+...++.
T Consensus       153 ~~l~~~i~~~~~~~~  167 (653)
T COG0370         153 EELKRAIIELAESKT  167 (653)
T ss_pred             HHHHHHHHHhccccc
Confidence            999999987665555

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.76  E-value=5.9e-18  Score=126.23  Aligned_cols=147  Identities=20%  Similarity=0.132  Sum_probs=95.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC---------------------------CCCCC---CceeeeEEEEEEECCeEEEEE
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNF---------------------------EELSP---TIGVDFKVKYVDVGGKKLKLA   65 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~---------------------------~~~~~---~~~~~~~~~~~~~~~~~~~~~   65 (210)
                      +|+++|++++|||||+.+|+....                           ....+   ..+.+.......+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            489999999999999999853211                           00111   344555555555555677899


Q ss_pred             EEeCCCccccccchhhcccCccEEEEEEeCCCccc------HHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC--ce
Q 028329           66 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT------FTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE--RV  137 (210)
Q Consensus        66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~  137 (210)
                      +||+||+..+...+...+..+|++++|+|+++...      .......+ .....   ....|+++++||+|+...  ..
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~iiivvNK~Dl~~~~~~~  156 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART---LGVKQLIVAVNKMDDVTVNWSE  156 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH---cCCCeEEEEEEccccccccccH
Confidence            99999988777766677788999999999998521      11122212 22221   123688999999998632  11


Q ss_pred             e----cHHHHHHHHHHhC-----CcEEEEccCCCCCHH
Q 028329          138 V----TKKEGINFAREYG-----CLFIECSAKTRVNVQ  166 (210)
Q Consensus       138 ~----~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~  166 (210)
                      .    ..+++.......+     ++++++||++|.|++
T Consensus       157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            1    1122222333433     569999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK12736 elongation factor Tu; Reviewed

Probab=99.76  E-value=4.4e-17  Score=131.35  Aligned_cols=161  Identities=17%  Similarity=0.094  Sum_probs=108.6

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCC------------C---CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF------------E---ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF   75 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (210)
                      ....++|+++|+.++|||||+++|++...            .   ......+.+.......+......+.+||+||+..|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            45579999999999999999999985311            0   01114455565555566556677899999999888


Q ss_pred             ccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCceec---HHHHHHHHHHhC
Q 028329           76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVVT---KKEGINFAREYG  151 (210)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~~---~~~~~~~~~~~~  151 (210)
                      .......+..+|++++|+|+++...-.. .. ++..+..    .++| +|+++||+|+.......   .+++..+....+
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~-~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~  162 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMPQT-RE-HILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhH-HH-HHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence            7766667788999999999987532222 22 2233332    3567 67899999986332221   224445544444


Q ss_pred             -----CcEEEEccCCCC--------CHHHHHHHHHHHHH
Q 028329          152 -----CLFIECSAKTRV--------NVQQCFEELVLKIL  177 (210)
Q Consensus       152 -----~~~~~~sa~~~~--------~i~~~~~~l~~~~~  177 (210)
                           ++++++||+++.        ++.++++.+.+.+.
T Consensus       163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence                 579999999983        56777777776654

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.75  E-value=2.1e-17  Score=122.83  Aligned_cols=174  Identities=19%  Similarity=0.206  Sum_probs=112.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEE-CCeEEEEEEEeCCCcccccc-----chhhcccCccEE
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRT-----LTSSYYRGAQGI   89 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~-----~~~~~~~~~d~~   89 (210)
                      ||+++|+.+|||||+.+.+..+..+......+.|.......+ ......+.+||+||+..+..     .....+++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L   80 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL   80 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence            799999999999999999998776655554444554444444 23456899999999864433     356678999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhh-hccCCCCcEEEEEeCCCCCCCc--ee----cHHHHHHHHHHhC---CcEEEEcc
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDL-YSTNQDCIKLLVGNKVDKESER--VV----TKKEGINFAREYG---CLFIECSA  159 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~piivv~nK~D~~~~~--~~----~~~~~~~~~~~~~---~~~~~~sa  159 (210)
                      |||+|+...+-.+.+.. +...+.. ....++..+.|..+|+|+..+.  ..    ..+.+...+...+   +.++.||.
T Consensus        81 IyV~D~qs~~~~~~l~~-~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI  159 (232)
T PF04670_consen   81 IYVFDAQSDDYDEDLAY-LSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI  159 (232)
T ss_dssp             EEEEETT-STCHHHHHH-HHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred             EEEEEcccccHHHHHHH-HHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence            99999996554444433 4444432 2336788899999999985332  11    1223334444455   67888888


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCcccccccCcc
Q 028329          160 KTRVNVQQCFEELVLKILDTPSLLAEGSKGLK  191 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~  191 (210)
                      .+ ..+-+.|..+++.+..+.+.+++....+.
T Consensus       160 ~D-~Sly~A~S~Ivq~LiP~~~~le~~L~~~~  190 (232)
T PF04670_consen  160 WD-ESLYEAWSKIVQKLIPNLSTLENLLNNFC  190 (232)
T ss_dssp             TS-THHHHHHHHHHHTTSTTHCCCCCCCCHHH
T ss_pred             cC-cHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            87 58999999999999888877777665544

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd04167 Snu114p Snu114p subfamily

Probab=99.75  E-value=2.6e-17  Score=122.39  Aligned_cols=112  Identities=23%  Similarity=0.281  Sum_probs=79.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCC------------------CCceeeeEEEEEEE-----CCeEEEEEEEeCCCc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELS------------------PTIGVDFKVKYVDV-----GGKKLKLAIWDTAGQ   72 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~   72 (210)
                      +|+++|++++|||||+++|+........                  ...+.++......+     ++..+.+.+||+||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999865433210                  01222222222221     355788999999999


Q ss_pred             cccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329           73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~  133 (210)
                      ..+.......+..+|++++|+|+.+..+.... . +.....    ..+.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~-~-~~~~~~----~~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE-R-LIRHAI----LEGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECcccC
Confidence            98888888888999999999999887665332 2 333332    2348999999999974

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=5.6e-18  Score=115.94  Aligned_cols=158  Identities=17%  Similarity=0.206  Sum_probs=119.0

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      ..=|++++|--|+|||||++.|........-||...+.....+    ....++-+|++|+...+..|..++..+|++++.
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~I----g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l   94 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSI----GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL   94 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHhee----cCceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence            4468999999999999999999988887777766655543333    456788899999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH----h--------C---CcEEEE
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE----Y--------G---CLFIEC  157 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~----~--------~---~~~~~~  157 (210)
                      +|+-|.+.|.+.+..+...+.. ..-..+|+++.+||+|.+....++.-........    .        +   ..++-|
T Consensus        95 vda~d~er~~es~~eld~ll~~-e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmc  173 (193)
T KOG0077|consen   95 VDAYDQERFAESKKELDALLSD-ESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMC  173 (193)
T ss_pred             eehhhHHHhHHHHHHHHHHHhH-HHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEE
Confidence            9999999999998855555443 3346799999999999876543322211111111    1        1   226788


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 028329          158 SAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       158 sa~~~~~i~~~~~~l~~~  175 (210)
                      |...+.+--+.|.|+.+.
T Consensus       174 si~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  174 SIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             EEEccCccceeeeehhhh
Confidence            888888888888887654

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.74  E-value=5.8e-17  Score=122.21  Aligned_cols=158  Identities=18%  Similarity=0.227  Sum_probs=107.9

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEE-EEEEEeCCCccc-------cccchhhccc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKL-KLAIWDTAGQER-------FRTLTSSYYR   84 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~D~~g~~~-------~~~~~~~~~~   84 (210)
                      ....|.++|.||+|||||++.|...+. ...+...+|.......++...+ .+.+-|+||.-+       +.......++
T Consensus       195 siadvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiE  273 (366)
T KOG1489|consen  195 SIADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIE  273 (366)
T ss_pred             eecccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHH
Confidence            345688999999999999999997764 2333333334333333333333 388889999322       2223334567


Q ss_pred             CccEEEEEEeCCCc---ccHHHHHHHHHHHHhhhc-cCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc-EEEEcc
Q 028329           85 GAQGIIMVYDVTRR---DTFTNLSDVWAKEIDLYS-TNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSA  159 (210)
Q Consensus        85 ~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa  159 (210)
                      .++.++||+|++..   +.++.+.. +..+++.|. ...+.|.++|+||+|+++.   .......++..+.-+ ++++||
T Consensus       274 R~~~l~fVvD~s~~~~~~p~~~~~l-L~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~lq~~~V~pvsA  349 (366)
T KOG1489|consen  274 RCKGLLFVVDLSGKQLRNPWQQLQL-LIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRLQNPHVVPVSA  349 (366)
T ss_pred             hhceEEEEEECCCcccCCHHHHHHH-HHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHcCCCcEEEeee
Confidence            89999999999998   77777777 555555443 3457899999999998522   111235555655544 999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 028329          160 KTRVNVQQCFEELVLK  175 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~  175 (210)
                      +.++++.++++.|.+.
T Consensus       350 ~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  350 KSGEGLEELLNGLREL  365 (366)
T ss_pred             ccccchHHHHHHHhhc
Confidence            9999999998877653

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.74  E-value=7.7e-17  Score=130.05  Aligned_cols=148  Identities=16%  Similarity=0.096  Sum_probs=99.5

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCC-------C-----C---CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDN-------F-----E---ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER   74 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~-------~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (210)
                      +....++|+++|+.++|||||+++|++..       +     .   ......+.+.....+.+......+.|||+||+..
T Consensus         8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~   87 (394)
T TIGR00485         8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD   87 (394)
T ss_pred             CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence            34667999999999999999999997320       0     0   0011355566666666666667899999999988


Q ss_pred             cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEE-EEEeCCCCCCCceec---HHHHHHHHHHh
Q 028329           75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVGNKVDKESERVVT---KKEGINFAREY  150 (210)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pii-vv~nK~D~~~~~~~~---~~~~~~~~~~~  150 (210)
                      |.......+..+|++++|+|+.+....... . .+..+..    .++|.+ +++||+|+.......   .+++..++...
T Consensus        88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e-~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~  161 (394)
T TIGR00485        88 YVKNMITGAAQMDGAILVVSATDGPMPQTR-E-HILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEY  161 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHHHH-H-HHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhc
Confidence            876666667788999999999874322221 2 2222322    246654 689999986433221   23455555555


Q ss_pred             C-----CcEEEEccCCCC
Q 028329          151 G-----CLFIECSAKTRV  163 (210)
Q Consensus       151 ~-----~~~~~~sa~~~~  163 (210)
                      +     ++++++|+.++.
T Consensus       162 ~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       162 DFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             CCCccCccEEECcccccc
Confidence            4     679999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.74  E-value=1.2e-16  Score=128.86  Aligned_cols=161  Identities=14%  Similarity=0.099  Sum_probs=107.0

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcC-------CC-----C---CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSD-------NF-----E---ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER   74 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~-------~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (210)
                      .....++|+++|++++|||||+++|++.       .+     .   ......+.+.......+......+.|+|+||+..
T Consensus         8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~   87 (396)
T PRK12735          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence            3456799999999999999999999852       10     0   0111445555555555655666789999999988


Q ss_pred             cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEE-EEEeCCCCCCCcee---cHHHHHHHHHHh
Q 028329           75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVGNKVDKESERVV---TKKEGINFAREY  150 (210)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pii-vv~nK~D~~~~~~~---~~~~~~~~~~~~  150 (210)
                      |.......+..+|++++|+|+.+...-. ... ++..+.    ..++|.+ +++||+|+......   ...++..+....
T Consensus        88 f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e-~l~~~~----~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~  161 (396)
T PRK12735         88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TRE-HILLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY  161 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchh-HHH-HHHHHH----HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHc
Confidence            8776667778899999999998753221 122 223332    2356755 67999998642211   122444555444


Q ss_pred             C-----CcEEEEccCCCC----------CHHHHHHHHHHHH
Q 028329          151 G-----CLFIECSAKTRV----------NVQQCFEELVLKI  176 (210)
Q Consensus       151 ~-----~~~~~~sa~~~~----------~i~~~~~~l~~~~  176 (210)
                      +     ++++++|+.++.          ++.++++.|...+
T Consensus       162 ~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        162 DFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             CCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence            3     578999999984          5677777776654

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.72  E-value=1.5e-16  Score=116.77  Aligned_cols=160  Identities=19%  Similarity=0.179  Sum_probs=98.5

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCce---eeeEEEEEEECCeEEEEEEEeCCCccccccch-----hhccc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIG---VDFKVKYVDVGGKKLKLAIWDTAGQERFRTLT-----SSYYR   84 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-----~~~~~   84 (210)
                      +++|+++|.+|+|||||+|.|++...... ..+.+   ++.....+... ....+.+||+||........     ...+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            37899999999999999999998654322 12222   11111111111 12368999999965322211     22356


Q ss_pred             CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-----------ecHHHHHHHH----HH
Q 028329           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-----------VTKKEGINFA----RE  149 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-----------~~~~~~~~~~----~~  149 (210)
                      .+|+++++.+    .++......|+..+...    +.|+++|+||+|+.....           ...++.+..+    ..
T Consensus        80 ~~d~~l~v~~----~~~~~~d~~~~~~l~~~----~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~  151 (197)
T cd04104          80 EYDFFIIISS----TRFSSNDVKLAKAIQCM----GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE  151 (197)
T ss_pred             CcCEEEEEeC----CCCCHHHHHHHHHHHHh----CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence            7899888743    23444444466666652    578999999999832211           1111222222    22


Q ss_pred             hC---CcEEEEccC--CCCCHHHHHHHHHHHHHcCCCc
Q 028329          150 YG---CLFIECSAK--TRVNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       150 ~~---~~~~~~sa~--~~~~i~~~~~~l~~~~~~~~~~  182 (210)
                      .+   -++|-+|+.  .+.++..+.+.|+..+.+.+.+
T Consensus       152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~  189 (197)
T cd04104         152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH  189 (197)
T ss_pred             cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence            22   248999998  5789999999999999776544

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>CHL00071 tufA elongation factor Tu

Probab=99.72  E-value=3.2e-16  Score=126.95  Aligned_cols=149  Identities=14%  Similarity=0.095  Sum_probs=100.6

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCC---------------CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF---------------EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER   74 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (210)
                      .....++|+++|++++|||||+++|++...               .......+.+.......+......+.|+|+||+..
T Consensus         8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~   87 (409)
T CHL00071          8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD   87 (409)
T ss_pred             CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence            345669999999999999999999986411               01111355555555555555566788999999988


Q ss_pred             cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCcee---cHHHHHHHHHHh
Q 028329           75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV---TKKEGINFAREY  150 (210)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~---~~~~~~~~~~~~  150 (210)
                      |.......+..+|++++|+|+.....- .... .+..+.    ..++| +|+++||+|+......   ...++..+....
T Consensus        88 ~~~~~~~~~~~~D~~ilVvda~~g~~~-qt~~-~~~~~~----~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~  161 (409)
T CHL00071         88 YVKNMITGAAQMDGAILVVSAADGPMP-QTKE-HILLAK----QVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKY  161 (409)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCcH-HHHH-HHHHHH----HcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHh
Confidence            877777778899999999999865322 2222 223332    23567 7789999998643321   122444454444


Q ss_pred             C-----CcEEEEccCCCCC
Q 028329          151 G-----CLFIECSAKTRVN  164 (210)
Q Consensus       151 ~-----~~~~~~sa~~~~~  164 (210)
                      +     ++++.+|+.++.+
T Consensus       162 ~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        162 DFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             CCCCCcceEEEcchhhccc
Confidence            3     5799999998864

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.71  E-value=5.1e-16  Score=115.81  Aligned_cols=152  Identities=16%  Similarity=0.103  Sum_probs=94.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCC-------------ceeeeEEE--EE----------------------EEC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPT-------------IGVDFKVK--YV----------------------DVG   58 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~-------------~~~~~~~~--~~----------------------~~~   58 (210)
                      ||+++|+.++|||||+.+|..+.+......             .|.+....  .+                      .+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999986654321110             11111000  00                      011


Q ss_pred             CeEEEEEEEeCCCccccccchhhccc--CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329           59 GKKLKLAIWDTAGQERFRTLTSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~  136 (210)
                      .....+.++|+||+..+.......+.  .+|++++|+|+.....-.. .. ++..+..    .++|+++|+||+|+....
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~-~l~~l~~----~~ip~ivvvNK~D~~~~~  154 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KE-HLGLALA----LNIPVFVVVTKIDLAPAN  154 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HH-HHHHHHH----cCCCEEEEEECccccCHH
Confidence            12356889999999888765554443  6899999999887643221 12 3444433    457899999999985432


Q ss_pred             eec--HHHHHHHHH--------------------------HhCCcEEEEccCCCCCHHHHHHHHH
Q 028329          137 VVT--KKEGINFAR--------------------------EYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus       137 ~~~--~~~~~~~~~--------------------------~~~~~~~~~sa~~~~~i~~~~~~l~  173 (210)
                      ...  ..+...+..                          ...+++|.+|+.+|.|+++++..|.
T Consensus       155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            221  112222221                          1124799999999999999887764

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd04169 RF3 RF3 subfamily

Probab=99.70  E-value=5.5e-16  Score=118.53  Aligned_cols=115  Identities=16%  Similarity=0.139  Sum_probs=80.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCC------------------C---CceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS------------------P---TIGVDFKVKYVDVGGKKLKLAIWDTAGQE   73 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~------------------~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (210)
                      -+|+++|++|+|||||+++|+...-....                  +   ..+.++......+......+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            46999999999999999999743211000                  0   11233334444556667889999999998


Q ss_pred             ccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329           74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~  135 (210)
                      .+.......++.+|++++|+|+++.... .... ++....    ..++|+++++||+|+...
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~-i~~~~~----~~~~P~iivvNK~D~~~a  138 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRK-LFEVCR----LRGIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHH-HHHHHH----hcCCCEEEEEECCccCCC
Confidence            8887777778999999999999875432 2222 333332    346899999999998654

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01850 CDC_Septin CDC/Septin

Probab=99.70  E-value=1.2e-15  Score=117.23  Aligned_cols=143  Identities=17%  Similarity=0.221  Sum_probs=93.5

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-----------CCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc----
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-----------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT----   77 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----   77 (210)
                      ..++|+++|.+|+|||||+++|++..+...           .++...+.....+..++..+.+.+|||||......    
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            368999999999999999999998876432           11334444455566678889999999999432211    


Q ss_pred             ----------------------chhhccc--CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329           78 ----------------------LTSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        78 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~  133 (210)
                                            .....+.  .+|+++|+++.+... +......++..+.     ..+|+++|+||+|+.
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~-----~~v~vi~VinK~D~l  156 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS-----KRVNIIPVIAKADTL  156 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh-----ccCCEEEEEECCCcC
Confidence                                  0101222  478888888877522 1111111233332     258999999999985


Q ss_pred             CCc--eecHHHHHHHHHHhCCcEEEEccCC
Q 028329          134 SER--VVTKKEGINFAREYGCLFIECSAKT  161 (210)
Q Consensus       134 ~~~--~~~~~~~~~~~~~~~~~~~~~sa~~  161 (210)
                      ...  ......+...+...++++|.+....
T Consensus       157 ~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         157 TPEELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence            432  2345566777788899988876643

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.69  E-value=1e-15  Score=119.55  Aligned_cols=163  Identities=17%  Similarity=0.146  Sum_probs=110.1

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccc---------cccchhh
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER---------FRTLTSS   81 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~   81 (210)
                      .....|.++|..|+|||||+|+|++..... .......+.....+.+.+ ...+.+-||.|.-.         |.++.. 
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE-  267 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE-  267 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH-
Confidence            456899999999999999999999765432 222333333344445543 34566779999432         222222 


Q ss_pred             cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCC
Q 028329           82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT  161 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  161 (210)
                      ....+|.++.|+|++++.....+.. ....+.. ....++|+|+|.||+|+..... .    ........-..+.+||++
T Consensus       268 E~~~aDlllhVVDaSdp~~~~~~~~-v~~vL~e-l~~~~~p~i~v~NKiD~~~~~~-~----~~~~~~~~~~~v~iSA~~  340 (411)
T COG2262         268 EVKEADLLLHVVDASDPEILEKLEA-VEDVLAE-IGADEIPIILVLNKIDLLEDEE-I----LAELERGSPNPVFISAKT  340 (411)
T ss_pred             HhhcCCEEEEEeecCChhHHHHHHH-HHHHHHH-cCCCCCCEEEEEecccccCchh-h----hhhhhhcCCCeEEEEecc
Confidence            2457999999999999977666665 5666655 3345699999999999754332 1    111111111589999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCcc
Q 028329          162 RVNVQQCFEELVLKILDTPSLL  183 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~~~~~~~~  183 (210)
                      +.|++.+.+.|...+.......
T Consensus       341 ~~gl~~L~~~i~~~l~~~~~~~  362 (411)
T COG2262         341 GEGLDLLRERIIELLSGLRTEV  362 (411)
T ss_pred             CcCHHHHHHHHHHHhhhcccce
Confidence            9999999999999887555443

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.69  E-value=5.7e-16  Score=127.24  Aligned_cols=153  Identities=20%  Similarity=0.156  Sum_probs=97.3

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC------------C--------------------CceeeeEEEEEEEC
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS------------P--------------------TIGVDFKVKYVDVG   58 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~------------~--------------------~~~~~~~~~~~~~~   58 (210)
                      ....++|+++|++++|||||+.+|+........            .                    ..+.+.......+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            356799999999999999999999754321110            0                    12233333333444


Q ss_pred             CeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee
Q 028329           59 GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV  138 (210)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~  138 (210)
                      .....+.|||+||+..|.......+..+|++++|+|+.....-..... + ..+...   ...|++|++||+|+......
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~-~-~l~~~l---g~~~iIvvvNKiD~~~~~~~  178 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH-S-FIATLL---GIKHLVVAVNKMDLVDYSEE  178 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH-H-HHHHHh---CCCceEEEEEeeccccchhH
Confidence            556688999999998887655566789999999999986532211111 1 112111   12478899999998643221


Q ss_pred             cHHH----HHHHHHHh----CCcEEEEccCCCCCHHHH
Q 028329          139 TKKE----GINFAREY----GCLFIECSAKTRVNVQQC  168 (210)
Q Consensus       139 ~~~~----~~~~~~~~----~~~~~~~sa~~~~~i~~~  168 (210)
                      ..++    ...+....    ..+++++||++|.|+++.
T Consensus       179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            1222    22223333    367999999999999764

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.68  E-value=1.2e-15  Score=115.89  Aligned_cols=157  Identities=20%  Similarity=0.178  Sum_probs=105.3

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc-----cccccchh----hcc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ-----ERFRTLTS----SYY   83 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-----~~~~~~~~----~~~   83 (210)
                      ....|+|.|.||||||||++.+++.+. +..+.+.+|-.....+++.....++++||||.     ++++..-.    +.-
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~  245 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR  245 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence            568999999999999999999997664 33344444444444455666678889999992     22222111    111


Q ss_pred             cCccEEEEEEeCCC--cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccC
Q 028329           84 RGAQGIIMVYDVTR--RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAK  160 (210)
Q Consensus        84 ~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~  160 (210)
                      .-.++++|++|.+.  .-+.+.-.. ++..++..   ...|+++|.||+|....+.....  .......+. ....+++.
T Consensus       246 hl~~~IlF~~D~Se~cgy~lE~Q~~-L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~--~~~~~~~~~~~~~~~~~~  319 (346)
T COG1084         246 HLAGVILFLFDPSETCGYSLEEQIS-LLEEIKEL---FKAPIVVVINKIDIADEEKLEEI--EASVLEEGGEEPLKISAT  319 (346)
T ss_pred             HhcCeEEEEEcCccccCCCHHHHHH-HHHHHHHh---cCCCeEEEEecccccchhHHHHH--HHHHHhhccccccceeee
Confidence            24689999999884  456666666 55555542   34899999999998755444333  333444444 37888999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028329          161 TRVNVQQCFEELVLKI  176 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~  176 (210)
                      .+.+++..-..+....
T Consensus       320 ~~~~~d~~~~~v~~~a  335 (346)
T COG1084         320 KGCGLDKLREEVRKTA  335 (346)
T ss_pred             ehhhHHHHHHHHHHHh
Confidence            9998887777766653

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.68  E-value=2.2e-16  Score=121.33  Aligned_cols=151  Identities=17%  Similarity=0.186  Sum_probs=93.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCC---C--------------ceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP---T--------------IGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL   78 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~---~--------------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   78 (210)
                      +|+++|++|+|||||+++|+.........   .              .+.+.......+......+.+||+||+..+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            58999999999999999997533211000   0              011122222223334567899999999888777


Q ss_pred             hhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcE--EE
Q 028329           79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLF--IE  156 (210)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~  156 (210)
                      +...+..+|++++|+|+++......... |. .+.    ..++|.++++||+|+....  .......+...++.++  +.
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~-~~-~~~----~~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~  152 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTEKL-WE-FAD----EAGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQ  152 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHHH-HH-HHH----HcCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEE
Confidence            8888999999999999998755433222 32 222    2468999999999986542  1122233333445543  44


Q ss_pred             EccCCCCCHHHHHHHHHH
Q 028329          157 CSAKTRVNVQQCFEELVL  174 (210)
Q Consensus       157 ~sa~~~~~i~~~~~~l~~  174 (210)
                      ++..++.++..+.+.+..
T Consensus       153 ip~~~~~~~~~~vd~~~~  170 (268)
T cd04170         153 LPIGEGDDFKGVVDLLTE  170 (268)
T ss_pred             ecccCCCceeEEEEcccC
Confidence            456666666555554443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.67  E-value=7.8e-16  Score=127.56  Aligned_cols=117  Identities=16%  Similarity=0.154  Sum_probs=81.3

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCC--CC----------------CC---CCceeeeEEEEEEECCeEEEEEEEeC
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF--EE----------------LS---PTIGVDFKVKYVDVGGKKLKLAIWDT   69 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~--~~----------------~~---~~~~~~~~~~~~~~~~~~~~~~l~D~   69 (210)
                      .....+|+++|++++|||||+++|+...-  ..                ..   ...+.++......+......+.+|||
T Consensus         7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT   86 (526)
T PRK00741          7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT   86 (526)
T ss_pred             hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence            34667999999999999999999963111  00                00   01233333333445555678999999


Q ss_pred             CCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329           70 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        70 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~  133 (210)
                      ||+..+.......+..+|++|+|+|+++.... .... ++...    ...++|+++++||+|+.
T Consensus        87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~-l~~~~----~~~~iPiiv~iNK~D~~  144 (526)
T PRK00741         87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRK-LMEVC----RLRDTPIFTFINKLDRD  144 (526)
T ss_pred             CCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHH-HHHHH----HhcCCCEEEEEECCccc
Confidence            99988888777788999999999999875422 2222 33333    23578999999999974

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.67  E-value=6.5e-16  Score=124.97  Aligned_cols=148  Identities=22%  Similarity=0.201  Sum_probs=94.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCC--------------------------------CCceeeeEEEEEEECCeEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS--------------------------------PTIGVDFKVKYVDVGGKKL   62 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~   62 (210)
                      ++|+++|+.++|||||+.+|+........                                ...+.+.......+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            48999999999999999999633211000                                0122333333344444556


Q ss_pred             EEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH--
Q 028329           63 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK--  140 (210)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~--  140 (210)
                      .+.|||+||+..|.......+..+|++++|+|+.....-..... + ..+...   ...+++|++||+|+........  
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~-~-~~~~~~---~~~~iivviNK~D~~~~~~~~~~~  155 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRH-S-YIASLL---GIRHVVLAVNKMDLVDYDEEVFEN  155 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHH-H-HHHHHc---CCCcEEEEEEecccccchHHHHHH
Confidence            88999999998887766677889999999999986543222111 1 122211   1246889999999864322111  


Q ss_pred             --HHHHHHHHHhC---CcEEEEccCCCCCHHH
Q 028329          141 --KEGINFAREYG---CLFIECSAKTRVNVQQ  167 (210)
Q Consensus       141 --~~~~~~~~~~~---~~~~~~sa~~~~~i~~  167 (210)
                        ++...+....+   ++++++||++|.|+++
T Consensus       156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence              22223333334   4699999999999885

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.67  E-value=2.1e-15  Score=112.14  Aligned_cols=112  Identities=18%  Similarity=0.229  Sum_probs=78.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCC---------------CCceeeeE--EEEEEEC--------CeEEEEEEEeCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELS---------------PTIGVDFK--VKYVDVG--------GKKLKLAIWDTA   70 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~---------------~~~~~~~~--~~~~~~~--------~~~~~~~l~D~~   70 (210)
                      +|+++|+.++|||||+.+|+........               ...+.+..  ...+.+.        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            6899999999999999999754311000               01122222  1222232        347889999999


Q ss_pred             CccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329           71 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~  133 (210)
                      |+..+.......++.+|++++|+|+.+..+...... +....     ..++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~-l~~~~-----~~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETV-LRQAL-----KERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHH-HHHHH-----HcCCCEEEEEECCCcc
Confidence            999999988999999999999999998765543222 22222     2357899999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK00049 elongation factor Tu; Reviewed

Probab=99.67  E-value=3.8e-15  Score=120.19  Aligned_cols=160  Identities=14%  Similarity=0.094  Sum_probs=104.9

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCC---------------CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE---------------ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER   74 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (210)
                      .....++|+++|+.++|||||+++|++....               ......+.+.......+......+.++|+||+..
T Consensus         8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~   87 (396)
T PRK00049          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence            3456799999999999999999999863110               0111455556555555555566788999999988


Q ss_pred             cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEE-EEEeCCCCCCCcee---cHHHHHHHHHHh
Q 028329           75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVGNKVDKESERVV---TKKEGINFAREY  150 (210)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pii-vv~nK~D~~~~~~~---~~~~~~~~~~~~  150 (210)
                      |.......+..+|++++|+|+.....-. ... ++..+..    .++|.+ +++||+|+......   ...++..+....
T Consensus        88 f~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~-~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~  161 (396)
T PRK00049         88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TRE-HILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY  161 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchH-HHH-HHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhc
Confidence            7776777788999999999998753322 222 2333332    357865 68999998642221   112334444433


Q ss_pred             -----CCcEEEEccCCCC----------CHHHHHHHHHHH
Q 028329          151 -----GCLFIECSAKTRV----------NVQQCFEELVLK  175 (210)
Q Consensus       151 -----~~~~~~~sa~~~~----------~i~~~~~~l~~~  175 (210)
                           .++++.+||+++.          ++..+++.|...
T Consensus       162 ~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~  201 (396)
T PRK00049        162 DFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY  201 (396)
T ss_pred             CCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence                 3579999999875          455666665554

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.67  E-value=7.2e-16  Score=118.04  Aligned_cols=113  Identities=17%  Similarity=0.172  Sum_probs=78.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC-----------------CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFE-----------------ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL   78 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   78 (210)
                      +|+++|++++|||||+++|+.....                 ......+.+.......+......+.+|||||+..+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            5899999999999999999642110                 00012344444333444445678899999999888888


Q ss_pred             hhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329           79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~  134 (210)
                      +...++.+|++++|+|+.+...-.. .. ++..+.    ..++|+++++||+|+..
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~-~~~~~~----~~~~p~ivviNK~D~~~  130 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQT-ET-VWRQAD----RYNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHH-HH-HHHHHH----HcCCCEEEEEECCCCCC
Confidence            8888999999999999987543222 12 223332    34689999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PLN03126 Elongation factor Tu; Provisional

Probab=99.67  E-value=2.8e-15  Score=122.83  Aligned_cols=148  Identities=15%  Similarity=0.087  Sum_probs=99.5

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCC------C---------CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF------E---------ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF   75 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~------~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (210)
                      ....++|+++|++++|||||+++|+....      .         ......+.+.......+......+.++|+||+..|
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            34579999999999999999999985211      0         11114455555544455555668899999999988


Q ss_pred             ccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCcee---cHHHHHHHHHHh-
Q 028329           76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV---TKKEGINFAREY-  150 (210)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~---~~~~~~~~~~~~-  150 (210)
                      .......+..+|++++|+|+.+...-.. .+ ++..+..    .++| +++++||+|+......   ..+++..+.... 
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~~~qt-~e-~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g  231 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGPMPQT-KE-HILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE  231 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHH-HH-HHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence            8777777888999999999987643222 22 3333332    3567 7789999998643221   112344444443 


Q ss_pred             ----CCcEEEEccCCCCC
Q 028329          151 ----GCLFIECSAKTRVN  164 (210)
Q Consensus       151 ----~~~~~~~sa~~~~~  164 (210)
                          .++++.+|+.++.+
T Consensus       232 ~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        232 FPGDDIPIISGSALLALE  249 (478)
T ss_pred             CCcCcceEEEEEcccccc
Confidence                45799999988753

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.67  E-value=6e-16  Score=104.12  Aligned_cols=105  Identities=24%  Similarity=0.249  Sum_probs=67.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE--EEEEECCeEEEEEEEeCCCcccc---------ccchhhccc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKV--KYVDVGGKKLKLAIWDTAGQERF---------RTLTSSYYR   84 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~---------~~~~~~~~~   84 (210)
                      +|+++|.+|+|||||+|+|++..........+.+...  ..+.+++..  +.++|+||...-         .......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            6899999999999999999986543333333333322  333445544  468999995321         111233347


Q ss_pred             CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028329           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK  129 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK  129 (210)
                      .+|++++|+|++++.. +.... ++..+    . ...|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~-~~~~l----~-~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKN-ILREL----K-NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHH-HHHHH----H-TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHH-HHHHH----h-cCCCEEEEEcC
Confidence            8999999999877322 12222 33333    2 57899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.67  E-value=4e-15  Score=112.81  Aligned_cols=155  Identities=21%  Similarity=0.116  Sum_probs=108.0

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc-------cccchhhcccC
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER-------FRTLTSSYYRG   85 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~   85 (210)
                      .--+++++|.|++|||||++.|++.+. +......+|...+...+.+...++++.|+||.-.       ........+++
T Consensus        62 Gda~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~  140 (365)
T COG1163          62 GDATVALVGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN  140 (365)
T ss_pred             CCeEEEEEcCCCccHHHHHHHHhCCCc-cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence            457899999999999999999997654 3444455556666666677788899999998322       12345567899


Q ss_pred             ccEEEEEEeCCCccc-HHHHHHHHHHHHhhhcc-----------------------------------------------
Q 028329           86 AQGIIMVYDVTRRDT-FTNLSDVWAKEIDLYST-----------------------------------------------  117 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~-----------------------------------------------  117 (210)
                      ||.+++|+|+..... .+.+.. .++......+                                               
T Consensus       141 ADlIiiVld~~~~~~~~~~i~~-ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~  219 (365)
T COG1163         141 ADLIIIVLDVFEDPHHRDIIER-ELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL  219 (365)
T ss_pred             CCEEEEEEecCCChhHHHHHHH-HHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence            999999999997655 333322 2221111111                                               


Q ss_pred             -----------------CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329          118 -----------------NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       118 -----------------~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                                       ...+|.++|.||.|+..     .++...+....  .++.+||..+.|++++.+.|.+.+
T Consensus       220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             EecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence                             12468899999999864     22333333322  789999999999999999988876

>PLN03127 Elongation factor Tu; Provisional

Probab=99.66  E-value=6.6e-15  Score=120.01  Aligned_cols=160  Identities=16%  Similarity=0.073  Sum_probs=103.3

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcC------CC------C---CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSD------NF------E---ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR   76 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~------~~------~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (210)
                      ...++|+++|+.++|||||+++|.+.      ..      .   ......+.|.......+......+.|+|+||+..|.
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~  138 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYV  138 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchH
Confidence            46799999999999999999999722      10      0   011135566666666666666788999999998877


Q ss_pred             cchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCceecH---HHHHHHHHHh--
Q 028329           77 TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVVTK---KEGINFAREY--  150 (210)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~~~---~~~~~~~~~~--  150 (210)
                      ......+..+|++++|+|+++...-. ..+ .+..+.    ..++| +|+++||+|+........   .+...+....  
T Consensus       139 ~~~~~g~~~aD~allVVda~~g~~~q-t~e-~l~~~~----~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~  212 (447)
T PLN03127        139 KNMITGAAQMDGGILVVSAPDGPMPQ-TKE-HILLAR----QVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF  212 (447)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCchh-HHH-HHHHHH----HcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence            66666667899999999998653222 122 222332    23577 578899999864322111   1222333322  


Q ss_pred             ---CCcEEEEccC---CCCC-------HHHHHHHHHHHHH
Q 028329          151 ---GCLFIECSAK---TRVN-------VQQCFEELVLKIL  177 (210)
Q Consensus       151 ---~~~~~~~sa~---~~~~-------i~~~~~~l~~~~~  177 (210)
                         .++++.+|+.   ++.|       +.++++.+.+.+.
T Consensus       213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence               3568888875   4444       6777777766553

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.66  E-value=2.4e-15  Score=122.68  Aligned_cols=150  Identities=16%  Similarity=0.135  Sum_probs=103.4

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCC---------------------------C---CCCCCceeeeEEEEEEECCeE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNF---------------------------E---ELSPTIGVDFKVKYVDVGGKK   61 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~---------------------------~---~~~~~~~~~~~~~~~~~~~~~   61 (210)
                      ...++|+++|+.++|||||+.+|+....                           .   ......+.+.......+....
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~   84 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK   84 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence            4568999999999999999998863211                           0   000133445555555566677


Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHH-------HHHHHHHHHHhhhccCCCC-cEEEEEeCCCCC
Q 028329           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFT-------NLSDVWAKEIDLYSTNQDC-IKLLVGNKVDKE  133 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~~-piivv~nK~D~~  133 (210)
                      ..+.++|+||+..|.......+..+|++|+|+|+++. .|+       .... .+....    ..++ ++||++||+|+.
T Consensus        85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~e-h~~~~~----~~gi~~iIV~vNKmD~~  158 (447)
T PLN00043         85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTRE-HALLAF----TLGVKQMICCCNKMDAT  158 (447)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHH-HHHHHH----HcCCCcEEEEEEcccCC
Confidence            8899999999999999888889999999999999873 222       2222 222222    2345 578899999975


Q ss_pred             CC-c-----eecHHHHHHHHHHhC-----CcEEEEccCCCCCHHH
Q 028329          134 SE-R-----VVTKKEGINFAREYG-----CLFIECSAKTRVNVQQ  167 (210)
Q Consensus       134 ~~-~-----~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~  167 (210)
                      .. .     ....+++..++...+     ++++++||.+|.|+.+
T Consensus       159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            21 1     112345566666655     5699999999999853

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=4.9e-15  Score=119.29  Aligned_cols=158  Identities=20%  Similarity=0.192  Sum_probs=109.8

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECC-eEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGG-KKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      +..-|.++|+..-|||||+-.+-......... ..+..+....+..+- ....+.|+|||||+.|..+...-..-+|+++
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI   83 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI   83 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence            45678999999999999999998776543222 222233333333321 3457899999999999999888888899999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC---------CcEEEEccCC
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG---------CLFIECSAKT  161 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~~  161 (210)
                      +|+|+++.---+...     .+.. ....++|++|++||+|.+...   ..........++         ..++++||++
T Consensus        84 LVVa~dDGv~pQTiE-----AI~h-ak~a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~v~~VpvSA~t  154 (509)
T COG0532          84 LVVAADDGVMPQTIE-----AINH-AKAAGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGDVIFVPVSAKT  154 (509)
T ss_pred             EEEEccCCcchhHHH-----HHHH-HHHCCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCceEEEEeeccC
Confidence            999999853222221     1222 335789999999999987432   222233233333         3489999999


Q ss_pred             CCCHHHHHHHHHHHHHcC
Q 028329          162 RVNVQQCFEELVLKILDT  179 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~~~~  179 (210)
                      |+|+++++..++-.....
T Consensus       155 g~Gi~eLL~~ill~aev~  172 (509)
T COG0532         155 GEGIDELLELILLLAEVL  172 (509)
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999887655433

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.65  E-value=9.7e-15  Score=107.18  Aligned_cols=161  Identities=12%  Similarity=0.121  Sum_probs=96.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeE--EEEEEECCeEEEEEEEeCCCcccccc-----------chh
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFK--VKYVDVGGKKLKLAIWDTAGQERFRT-----------LTS   80 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~~~~-----------~~~   80 (210)
                      ++|+++|.+|||||||+|++++........ ..+.|..  .......+  ..+.++||||......           ...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            479999999999999999999876543321 2222222  22223333  4688899999543221           111


Q ss_pred             hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCCceec------HHHHHHHHHHhCCc
Q 028329           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESERVVT------KKEGINFAREYGCL  153 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~  153 (210)
                      ....++|++++|+++.+ .+-..  ...+..+... ....-.++++++|+.|......+.      ......+....+-.
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r  155 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGR  155 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCe
Confidence            22457899999999887 22211  1133333321 112235788999999864332111      12334444555555


Q ss_pred             EEEEc-----cCCCCCHHHHHHHHHHHHHcCC
Q 028329          154 FIECS-----AKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       154 ~~~~s-----a~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      ++..+     +..+.++.++++.|.+.+.++.
T Consensus       156 ~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~  187 (196)
T cd01852         156 YVAFNNKAKGEEQEQQVKELLAKVESMVKENG  187 (196)
T ss_pred             EEEEeCCCCcchhHHHHHHHHHHHHHHHHhcC
Confidence            55554     3457789999999999988743

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=1.1e-15  Score=121.51  Aligned_cols=167  Identities=20%  Similarity=0.199  Sum_probs=115.6

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc---------chhhc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT---------LTSSY   82 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~~~~   82 (210)
                      ...+.|+++|.||||||||+|.|...+...+.|.+|+|.......++-..+.+.|.||+|..+-..         .....
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~  345 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR  345 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence            456999999999999999999999999999999999999988888877778899999999655111         12234


Q ss_pred             ccCccEEEEEEeCCCcc--cHHHHHHHHHHHHhhhcc-----CCCCcEEEEEeCCCCCCCc-eecHHHHHHHHHHhC---
Q 028329           83 YRGAQGIIMVYDVTRRD--TFTNLSDVWAKEIDLYST-----NQDCIKLLVGNKVDKESER-VVTKKEGINFAREYG---  151 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~-----~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~---  151 (210)
                      +..+|++++|+|+....  +-..+.. .+........     ....+++++.||.|+..+- ...... .-+....+   
T Consensus       346 ~~~advi~~vvda~~~~t~sd~~i~~-~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~~~~  423 (531)
T KOG1191|consen  346 IERADVILLVVDAEESDTESDLKIAR-ILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEGRSV  423 (531)
T ss_pred             HhhcCEEEEEecccccccccchHHHH-HHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eeccccccCcc
Confidence            66899999999994433  3222222 3333322111     1236889999999996542 221111 11111122   


Q ss_pred             Cc-EEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028329          152 CL-FIECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       152 ~~-~~~~sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      .+ ..++|+++++|++++.+.+.+.+....
T Consensus       424 ~~i~~~vs~~tkeg~~~L~~all~~~~~~~  453 (531)
T KOG1191|consen  424 FPIVVEVSCTTKEGCERLSTALLNIVERLV  453 (531)
T ss_pred             cceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence            23 566999999999999999988775443

>PRK13351 elongation factor G; Reviewed

Probab=99.64  E-value=3.3e-15  Score=128.47  Aligned_cols=118  Identities=16%  Similarity=0.229  Sum_probs=83.3

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCC--------------CCCC---CceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFE--------------ELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQE   73 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~--------------~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (210)
                      .+...+|+++|+.++|||||+++|+.....              ...+   ..+.+.......+......+.+|||||+.
T Consensus         5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~   84 (687)
T PRK13351          5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI   84 (687)
T ss_pred             cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence            345689999999999999999999743210              0000   12223322223333456789999999999


Q ss_pred             ccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329           74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~  134 (210)
                      .+...+...++.+|++++|+|+++..+...... |. .+.    ..++|+++++||+|+..
T Consensus        85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~-~~-~~~----~~~~p~iiviNK~D~~~  139 (687)
T PRK13351         85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETV-WR-QAD----RYGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HH-HHH----hcCCCEEEEEECCCCCC
Confidence            888888889999999999999998776554433 42 222    24689999999999853

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=5.2e-15  Score=118.89  Aligned_cols=169  Identities=18%  Similarity=0.204  Sum_probs=124.1

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCC--------------CCCCCceeeeEEEEEE---ECCeEEEEEEEeCCCc
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE--------------ELSPTIGVDFKVKYVD---VGGKKLKLAIWDTAGQ   72 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~--------------~~~~~~~~~~~~~~~~---~~~~~~~~~l~D~~g~   72 (210)
                      +.++.-++.|+-+..=|||||..+|+.....              +.....|.|+......   .++..+.+.++|||||
T Consensus        56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH  135 (650)
T KOG0462|consen   56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH  135 (650)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence            3456778999999999999999998643210              1112334555444332   2466699999999999


Q ss_pred             cccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH-HHHHHHHHhC
Q 028329           73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK-EGINFAREYG  151 (210)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~-~~~~~~~~~~  151 (210)
                      ..|.......+..||++++|+|++..-.-+.+.. +...+.     .+.-+|.|.||+|++..+....+ +....+....
T Consensus       136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~an-f~lAfe-----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~  209 (650)
T KOG0462|consen  136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVAN-FYLAFE-----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPP  209 (650)
T ss_pred             ccccceehehhhhcCceEEEEEcCcCchHHHHHH-HHHHHH-----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc
Confidence            9999999999999999999999999887777777 333333     35778999999999876543322 2333333344


Q ss_pred             CcEEEEccCCCCCHHHHHHHHHHHHHcCCCccc
Q 028329          152 CLFIECSAKTRVNVQQCFEELVLKILDTPSLLA  184 (210)
Q Consensus       152 ~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~  184 (210)
                      .+++.+||++|.+++++++.+++.+....-..+
T Consensus       210 ~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~d  242 (650)
T KOG0462|consen  210 AEVIYVSAKTGLNVEELLEAIIRRVPPPKGIRD  242 (650)
T ss_pred             cceEEEEeccCccHHHHHHHHHhhCCCCCCCCC
Confidence            569999999999999999999999865554443

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.64  E-value=6.8e-15  Score=120.08  Aligned_cols=151  Identities=19%  Similarity=0.138  Sum_probs=100.0

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCC---------------------------C---CCCCCceeeeEEEEEEECCeE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNF---------------------------E---ELSPTIGVDFKVKYVDVGGKK   61 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~---------------------------~---~~~~~~~~~~~~~~~~~~~~~   61 (210)
                      ...++|+++|+.++|||||+.+|+....                           .   ......+.+.......+....
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            4568999999999999999999874210                           0   000133455555555566667


Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCccc---H---HHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCC
Q 028329           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---F---TNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKES  134 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~  134 (210)
                      ..+.|+|+||+..|.......+..+|++++|+|+.....   +   ....+ .+..+.    ...+| +||++||+|.+.
T Consensus        85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~e-h~~~~~----~~gi~~iiv~vNKmD~~~  159 (446)
T PTZ00141         85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTRE-HALLAF----TLGVKQMIVCINKMDDKT  159 (446)
T ss_pred             eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHH-HHHHHH----HcCCCeEEEEEEcccccc
Confidence            889999999999988888888899999999999987531   1   12222 122222    23455 678999999532


Q ss_pred             --Cc----eecHHHHHHHHHHhC-----CcEEEEccCCCCCHHH
Q 028329          135 --ER----VVTKKEGINFAREYG-----CLFIECSAKTRVNVQQ  167 (210)
Q Consensus       135 --~~----~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~  167 (210)
                        ..    ....+++..++...+     ++++++|+.+|.|+.+
T Consensus       160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence              11    111233344444333     5699999999999864

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.64  E-value=4.4e-16  Score=111.04  Aligned_cols=119  Identities=21%  Similarity=0.280  Sum_probs=74.9

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhc---ccCccEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLTSSY---YRGAQGI   89 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~---~~~~d~~   89 (210)
                      .-.|+++|++|+|||+|...|..+.............   .+.+ ......+.++|+||+...+......   ...+.++
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            3578999999999999999999986544333221111   1111 2234468888999999988755554   7789999


Q ss_pred             EEEEeCCC-cccHHHHHHHHHHHHhhhc-cCCCCcEEEEEeCCCCCCC
Q 028329           90 IMVYDVTR-RDTFTNLSDVWAKEIDLYS-TNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        90 i~v~d~~~-~~s~~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~  135 (210)
                      |||+|.+. ...+..+.++++..+..-. ....+|++|+.||+|+...
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            99999874 3455666665555554322 3457899999999998643

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.63  E-value=7.9e-15  Score=124.92  Aligned_cols=152  Identities=22%  Similarity=0.165  Sum_probs=96.1

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC------------C--------------------CceeeeEEEEEEEC
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS------------P--------------------TIGVDFKVKYVDVG   58 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~------------~--------------------~~~~~~~~~~~~~~   58 (210)
                      ....++|+++|++++|||||+++|+........            .                    ..+.+.......+.
T Consensus        21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~  100 (632)
T PRK05506         21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA  100 (632)
T ss_pred             CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence            345689999999999999999999854321110            0                    11223333333344


Q ss_pred             CeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee
Q 028329           59 GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV  138 (210)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~  138 (210)
                      .....+.|+|+||+..+.......+..+|++++|+|+.....-....  ....+...   ...+++|++||+|+......
T Consensus       101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e--~~~~~~~~---~~~~iivvvNK~D~~~~~~~  175 (632)
T PRK05506        101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR--HSFIASLL---GIRHVVLAVNKMDLVDYDQE  175 (632)
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH--HHHHHHHh---CCCeEEEEEEecccccchhH
Confidence            45567889999999887665566678999999999997653221111  11222221   22578899999998642211


Q ss_pred             cH----HHHHHHHHHhC---CcEEEEccCCCCCHHH
Q 028329          139 TK----KEGINFAREYG---CLFIECSAKTRVNVQQ  167 (210)
Q Consensus       139 ~~----~~~~~~~~~~~---~~~~~~sa~~~~~i~~  167 (210)
                      ..    .+...+....+   ++++++||++|.|+.+
T Consensus       176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            11    22223334444   3599999999999874

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.62  E-value=1.6e-14  Score=110.37  Aligned_cols=162  Identities=19%  Similarity=0.167  Sum_probs=106.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCC-CCCCC--CceeeeEEEEEEECCeEEEEEEEeCCCccccc-------cchhhccc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNF-EELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-------TLTSSYYR   84 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~   84 (210)
                      --|.++|.||+|||||++.+..-+. ...||  |.....-.+.+   ...-.+.+=|+||.-+-.       ......+.
T Consensus       160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE  236 (369)
T COG0536         160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIE  236 (369)
T ss_pred             cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHH
Confidence            4567999999999999999997654 23444  22233333333   233457777999932211       22334467


Q ss_pred             CccEEEEEEeCCCccc---HHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc-EEEEcc
Q 028329           85 GAQGIIMVYDVTRRDT---FTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSA  159 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa  159 (210)
                      .+.+++.|+|++..+.   .+.... +..++..| ..-.+.|.+||+||+|+....+........+....+.. ++.+|+
T Consensus       237 Rt~vL~hviD~s~~~~~dp~~~~~~-i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa  315 (369)
T COG0536         237 RTRVLLHVIDLSPIDGRDPIEDYQT-IRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISA  315 (369)
T ss_pred             hhheeEEEEecCcccCCCHHHHHHH-HHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeeh
Confidence            8999999999986553   444444 55555555 33457899999999997654444333444444444543 222999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCC
Q 028329          160 KTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      .++.|++++...+.+.+.+..
T Consensus       316 ~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         316 LTREGLDELLRALAELLEETK  336 (369)
T ss_pred             hcccCHHHHHHHHHHHHHHhh
Confidence            999999999999999887765

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.61  E-value=1.2e-14  Score=113.42  Aligned_cols=60  Identities=12%  Similarity=0.124  Sum_probs=42.1

Q ss_pred             CCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCcEEEEccCCCCCHHHHHH-HHHHHHHcCCCcc
Q 028329          120 DCIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFE-ELVLKILDTPSLL  183 (210)
Q Consensus       120 ~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~-~l~~~~~~~~~~~  183 (210)
                      ..|+++++||.|+.......    ..+.... ...++.+||+.+.+++++.+ .+.+.+.+.....
T Consensus       214 ~KPvI~VlNK~Dl~~~~~~~----~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~  275 (318)
T cd01899         214 SKPMVIAANKADIPDAENNI----SKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFE  275 (318)
T ss_pred             CCcEEEEEEHHHccChHHHH----HHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCce
Confidence            46999999999975332211    1111222 45699999999999999998 5888887665443

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.60  E-value=2.6e-14  Score=116.51  Aligned_cols=163  Identities=14%  Similarity=0.152  Sum_probs=102.7

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--Cceee----eEEE------------EE-EEC-C------------
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVD----FKVK------------YV-DVG-G------------   59 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~--~~~~~----~~~~------------~~-~~~-~------------   59 (210)
                      ...++|.++|+...|||||+.+|++........  ..+.+    +...            .+ ... +            
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            346899999999999999999999653211111  11111    1000            00 000 0            


Q ss_pred             ---eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329           60 ---KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        60 ---~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~  136 (210)
                         ....+.|+|+||+..|.......+..+|++++|+|+.+........+ .+..+..   ..-.+++|++||+|+....
T Consensus       112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~e-hl~i~~~---lgi~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSE-HLAAVEI---MKLKHIIILQNKIDLVKEA  187 (460)
T ss_pred             cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHH-HHHHHHH---cCCCcEEEEEecccccCHH
Confidence               02368899999999888877777889999999999987421111122 2222221   1124689999999986432


Q ss_pred             ee--cHHHHHHHHHH---hCCcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329          137 VV--TKKEGINFARE---YGCLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       137 ~~--~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      ..  ..+++..+...   ...+++++||++|.|++.+++.|.+.+..
T Consensus       188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI  234 (460)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence            21  12233333322   35679999999999999999998875543

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=5e-14  Score=113.34  Aligned_cols=158  Identities=16%  Similarity=0.112  Sum_probs=113.1

Q ss_pred             ccccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhc
Q 028329            6 ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSY   82 (210)
Q Consensus         6 ~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~   82 (210)
                      .+..-..++.-|.++|+..=|||||+..|-+........   |.....+.+.+. +|  -.++|.||||+..|..+.-.-
T Consensus       145 ~p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G--~~iTFLDTPGHaAF~aMRaRG  221 (683)
T KOG1145|consen  145 DPKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SG--KSITFLDTPGHAAFSAMRARG  221 (683)
T ss_pred             CHhhcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CC--CEEEEecCCcHHHHHHHHhcc
Confidence            334444578889999999999999999998776543221   344334444444 33  578899999999999999888


Q ss_pred             ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC---------Cc
Q 028329           83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG---------CL  153 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~  153 (210)
                      ..-.|++++|+.+.|.---+     -.+.|.. ....++|+||++||+|.+...   .+.+.......|         +.
T Consensus       222 A~vtDIvVLVVAadDGVmpQ-----T~EaIkh-Ak~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQ  292 (683)
T KOG1145|consen  222 ANVTDIVVLVVAADDGVMPQ-----TLEAIKH-AKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQ  292 (683)
T ss_pred             CccccEEEEEEEccCCccHh-----HHHHHHH-HHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCcee
Confidence            88899999999999863222     2233333 456789999999999987543   223333333332         44


Q ss_pred             EEEEccCCCCCHHHHHHHHHHH
Q 028329          154 FIECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       154 ~~~~sa~~~~~i~~~~~~l~~~  175 (210)
                      ++++||++|.|++.+-+.++-.
T Consensus       293 vipiSAl~g~nl~~L~eaill~  314 (683)
T KOG1145|consen  293 VIPISALTGENLDLLEEAILLL  314 (683)
T ss_pred             EEEeecccCCChHHHHHHHHHH
Confidence            8999999999999988776653

>TIGR00503 prfC peptide chain release factor 3

Probab=99.59  E-value=4.1e-15  Score=123.33  Aligned_cols=120  Identities=16%  Similarity=0.189  Sum_probs=83.6

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCC--CCC---C-------------C---CCceeeeEEEEEEECCeEEEEEEEe
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDN--FEE---L-------------S---PTIGVDFKVKYVDVGGKKLKLAIWD   68 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~--~~~---~-------------~---~~~~~~~~~~~~~~~~~~~~~~l~D   68 (210)
                      ...+..+|+++|++++|||||+++|+...  ...   .             .   ...+.++......++.....+.+||
T Consensus         7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD   86 (527)
T TIGR00503         7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD   86 (527)
T ss_pred             hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence            34567899999999999999999985311  100   0             0   0223444444455666678899999


Q ss_pred             CCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329           69 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~  135 (210)
                      |||+..+.......+..+|++|+|+|+++.... .... ++....    ..++|+++++||+|+...
T Consensus        87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~-l~~~~~----~~~~PiivviNKiD~~~~  147 (527)
T TIGR00503        87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVET-RTRK-LMEVTR----LRDTPIFTFMNKLDRDIR  147 (527)
T ss_pred             CCChhhHHHHHHHHHHhCCEEEEEEECCCCCCH-HHHH-HHHHHH----hcCCCEEEEEECccccCC
Confidence            999988877677778999999999999875221 1222 333333    246899999999998643

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK12739 elongation factor G; Reviewed

Probab=99.58  E-value=6.4e-14  Score=120.40  Aligned_cols=118  Identities=14%  Similarity=0.143  Sum_probs=81.0

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCC--C---CC------------CCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFE--E---LS------------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE   73 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~--~---~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (210)
                      .++..+|+++|++++|||||+++|+.....  .   ..            ...+.+.......+......+.++||||+.
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~   84 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV   84 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence            345688999999999999999999742110  0   00            122334433333333355678999999998


Q ss_pred             ccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329           74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~  134 (210)
                      .+...+...+..+|++++|+|+.+....... . .+..+.    ..++|+++++||+|+..
T Consensus        85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~-i~~~~~----~~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-T-VWRQAD----KYGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECCCCCC
Confidence            8777788888999999999999876433222 2 222222    34688999999999853

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.57  E-value=4.8e-14  Score=121.19  Aligned_cols=119  Identities=15%  Similarity=0.120  Sum_probs=83.3

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCC-----CCC------------CceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-----LSP------------TIGVDFKVKYVDVGGKKLKLAIWDTAGQE   73 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (210)
                      .+...+|.++|++++|||||+++|+...-..     ...            ..+.+.......+......+.+|||||+.
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~   86 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV   86 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence            3455799999999999999999997422110     000            23344444444444456789999999998


Q ss_pred             ccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329           74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~  135 (210)
                      .+...+...++.+|++++|+|+.+........  ++..+.    ..++|+++++||+|+...
T Consensus        87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~--~~~~~~----~~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSET--VWRQAN----RYEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             chhHHHHHHHHHhCEEEEEEeCCCCCChhHHH--HHHHHH----HcCCCEEEEEECCCCCCC
Confidence            88777888899999999999999865544332  222232    246899999999998754

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=3.8e-14  Score=110.87  Aligned_cols=155  Identities=19%  Similarity=0.111  Sum_probs=103.1

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCC------------------------------CCCCCCceeeeEEEEEEECCe
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF------------------------------EELSPTIGVDFKVKYVDVGGK   60 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~   60 (210)
                      ....++++++|+..+|||||+-+|+...-                              .......|.|+......+...
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            34579999999999999999999853210                              011114466666666777778


Q ss_pred             EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHH--H-HH-HHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329           61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTN--L-SD-VWAKEIDLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~-~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~  136 (210)
                      .+.++++|+||+..|-......+..||+.|+|+|+++.+....  . -+ .-...+....  .--.+||++||+|+..-+
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl--Gi~~lIVavNKMD~v~wd  161 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL--GIKQLIVAVNKMDLVSWD  161 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc--CCceEEEEEEcccccccC
Confidence            8899999999988888877778889999999999998741110  0 00 0111111111  124568899999997633


Q ss_pred             eecHHHHH----HHHHHhC-----CcEEEEccCCCCCHHH
Q 028329          137 VVTKKEGI----NFAREYG-----CLFIECSAKTRVNVQQ  167 (210)
Q Consensus       137 ~~~~~~~~----~~~~~~~-----~~~~~~sa~~~~~i~~  167 (210)
                      ....+++.    .+.+..|     ++|+++|+..|.|+.+
T Consensus       162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            33333322    2333333     5599999999998765

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=7.1e-14  Score=100.03  Aligned_cols=157  Identities=19%  Similarity=0.235  Sum_probs=99.9

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhccc---CccEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR---GAQGII   90 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~---~~d~~i   90 (210)
                      .-.|+++|+.+||||+|...|..+.+....+.....  ...+..  ....++++|.||+...+.....++.   .+-++|
T Consensus        38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn--~a~~r~--gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV  113 (238)
T KOG0090|consen   38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPN--EATYRL--GSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV  113 (238)
T ss_pred             CCcEEEEecCCCCceeeeeehhcCCccCeeeeeccc--eeeEee--cCcceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence            357999999999999999999987554333222211  111122  2233789999999998886666666   789999


Q ss_pred             EEEeCCC-cccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCCc--eecHHH------------------------
Q 028329           91 MVYDVTR-RDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESER--VVTKKE------------------------  142 (210)
Q Consensus        91 ~v~d~~~-~~s~~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~~--~~~~~~------------------------  142 (210)
                      +|+|..- ......+.+++...+-.. .....+|++++.||.|+...+  ....+.                        
T Consensus       114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~  193 (238)
T KOG0090|consen  114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA  193 (238)
T ss_pred             EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence            9999653 333445555444444332 135578999999999983221  110000                        


Q ss_pred             --------HH--HHHH--HhCCcEEEEccCCCCCHHHHHHHHHHH
Q 028329          143 --------GI--NFAR--EYGCLFIECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       143 --------~~--~~~~--~~~~~~~~~sa~~~~~i~~~~~~l~~~  175 (210)
                              +.  .|.+  ...+.|.++|++.+ +++++-+||.+.
T Consensus       194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                    00  1111  12345888999988 899999998765

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.55  E-value=4e-14  Score=92.74  Aligned_cols=137  Identities=20%  Similarity=0.155  Sum_probs=96.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc----hhhcccCccEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL----TSSYYRGAQGII   90 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----~~~~~~~~d~~i   90 (210)
                      -||.++|..|+|||||.+.|.+.... +..+...++.       ..    -.+|+||.-.-.+.    .......+|+++
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~l-ykKTQAve~~-------d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDTL-YKKTQAVEFN-------DK----GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchhh-hcccceeecc-------Cc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            47999999999999999999976542 2223333221       11    12499984332222    333456899999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc-EEEEccCCCCCHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCF  169 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~  169 (210)
                      +|-.++++++.-...-         ..-...|+|-+++|.|+++.  .+....+.|...-|.. +|++|+.++.|+++++
T Consensus        70 ~v~~and~~s~f~p~f---------~~~~~k~vIgvVTK~DLaed--~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~  138 (148)
T COG4917          70 YVHAANDPESRFPPGF---------LDIGVKKVIGVVTKADLAED--ADISLVKRWLREAGAEPIFETSAVDNQGVEELV  138 (148)
T ss_pred             eeecccCccccCCccc---------ccccccceEEEEecccccch--HhHHHHHHHHHHcCCcceEEEeccCcccHHHHH
Confidence            9999999976433311         12234568999999999853  4455678888888874 9999999999999999


Q ss_pred             HHHHH
Q 028329          170 EELVL  174 (210)
Q Consensus       170 ~~l~~  174 (210)
                      +.|..
T Consensus       139 ~~L~~  143 (148)
T COG4917         139 DYLAS  143 (148)
T ss_pred             HHHHh
Confidence            98764

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.55  E-value=1.8e-13  Score=109.89  Aligned_cols=168  Identities=21%  Similarity=0.231  Sum_probs=99.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCC-CCC--CceeeeEEEEEE-------------------EC-CeEEEEEEEeCCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSP--TIGVDFKVKYVD-------------------VG-GKKLKLAIWDTAG   71 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~--~~~~~~~~~~~~-------------------~~-~~~~~~~l~D~~g   71 (210)
                      ++|+++|.||||||||+++|++..... .++  |...+.....+.                   .+ .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            689999999999999999999876532 233  111222111110                   11 2346789999999


Q ss_pred             cc----ccccchhh---cccCccEEEEEEeCCCc-------------c---cHHHHHHH------------HHHHHhh--
Q 028329           72 QE----RFRTLTSS---YYRGAQGIIMVYDVTRR-------------D---TFTNLSDV------------WAKEIDL--  114 (210)
Q Consensus        72 ~~----~~~~~~~~---~~~~~d~~i~v~d~~~~-------------~---s~~~~~~~------------~~~~~~~--  114 (210)
                      ..    ....+-..   .++.+|++++|+|+...             +   .++.+...            |....+.  
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~  161 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQ  161 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            42    22223223   38899999999999721             0   01111110            0000000  


Q ss_pred             --------------------------hc------------------------cCCCCcEEEEEeCCCCCCCceecHHHHH
Q 028329          115 --------------------------YS------------------------TNQDCIKLLVGNKVDKESERVVTKKEGI  144 (210)
Q Consensus       115 --------------------------~~------------------------~~~~~piivv~nK~D~~~~~~~~~~~~~  144 (210)
                                                ..                        ....+|+++|+||.|...... ......
T Consensus       162 ~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~-~l~~i~  240 (396)
T PRK09602        162 AEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEE-NIERLK  240 (396)
T ss_pred             cCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchH-HHHHHH
Confidence                                      00                        012489999999999753221 112222


Q ss_pred             HHHHHhCCcEEEEccCCCCCHHH-HHHHHHHHHHcCCCccccc
Q 028329          145 NFAREYGCLFIECSAKTRVNVQQ-CFEELVLKILDTPSLLAEG  186 (210)
Q Consensus       145 ~~~~~~~~~~~~~sa~~~~~i~~-~~~~l~~~~~~~~~~~~~~  186 (210)
                      .+   ....++.+||+.+.++.+ +.+.+.+.+.........+
T Consensus       241 ~~---~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d  280 (396)
T PRK09602        241 EE---KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILG  280 (396)
T ss_pred             hc---CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccc
Confidence            22   244689999999999999 7888888777766555443

>PRK09866 hypothetical protein; Provisional

Probab=99.55  E-value=5.2e-13  Score=110.53  Aligned_cols=109  Identities=15%  Similarity=0.116  Sum_probs=71.8

Q ss_pred             EEEEEEeCCCcccc-----ccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329           62 LKLAIWDTAGQERF-----RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        62 ~~~~l~D~~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~  136 (210)
                      .++.|+||||....     .......+..+|++++|+|++...+.... . +...+...  ....|+++|+||+|+.+..
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-e-Ilk~Lkk~--~K~~PVILVVNKIDl~dre  305 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-E-VREAILAV--GQSVPLYVLVNKFDQQDRN  305 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-H-HHHHHHhc--CCCCCEEEEEEcccCCCcc
Confidence            35788999996542     22334468899999999999875433321 1 34444431  1135999999999985433


Q ss_pred             eecHHHHHHHHH----HhCC---cEEEEccCCCCCHHHHHHHHHH
Q 028329          137 VVTKKEGINFAR----EYGC---LFIECSAKTRVNVQQCFEELVL  174 (210)
Q Consensus       137 ~~~~~~~~~~~~----~~~~---~~~~~sa~~~~~i~~~~~~l~~  174 (210)
                      ....+....+..    ..+.   .+|++||+.|.|++++++.|..
T Consensus       306 eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        306 SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            333444444432    2222   4999999999999998888766

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.55  E-value=1.8e-13  Score=103.87  Aligned_cols=164  Identities=19%  Similarity=0.247  Sum_probs=121.7

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEE--CCeEEEEEEEeCCCccccccchhhcccCc----c
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDV--GGKKLKLAIWDTAGQERFRTLTSSYYRGA----Q   87 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~D~~g~~~~~~~~~~~~~~~----d   87 (210)
                      .-+|+++|+.++||||||.+|.+..  ...+..+.++....++-  .....++.+|-+-|+..+..+....+...    .
T Consensus        52 gk~VlvlGdn~sGKtsLi~klqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet  129 (473)
T KOG3905|consen   52 GKNVLVLGDNGSGKTSLISKLQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET  129 (473)
T ss_pred             CCeEEEEccCCCchhHHHHHhhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence            4689999999999999999999876  33344555554444432  22346788999999888888777766543    5


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccC-------------------------------------------------
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTN-------------------------------------------------  118 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-------------------------------------------------  118 (210)
                      .+|++.|.++++...+..+.|...+.....+                                                 
T Consensus       130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l  209 (473)
T KOG3905|consen  130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL  209 (473)
T ss_pred             EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence            7888999999977666666687776554221                                                 


Q ss_pred             -----------CCCcEEEEEeCCCC----CCCce-------ecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329          119 -----------QDCIKLLVGNKVDK----ESERV-------VTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       119 -----------~~~piivv~nK~D~----~~~~~-------~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                                 ..+|++||.+|+|.    +.+.+       .....++.|+..+|...+.+|+++..|++-+..+|..++
T Consensus       210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~  289 (473)
T KOG3905|consen  210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS  289 (473)
T ss_pred             cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence                       36799999999998    22221       122346778888899999999999999999999999988


Q ss_pred             HcC
Q 028329          177 LDT  179 (210)
Q Consensus       177 ~~~  179 (210)
                      +.-
T Consensus       290 yG~  292 (473)
T KOG3905|consen  290 YGF  292 (473)
T ss_pred             cCc
Confidence            543

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.54  E-value=5.4e-14  Score=104.69  Aligned_cols=162  Identities=20%  Similarity=0.262  Sum_probs=106.6

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEE-EEECCeEEEEEEEeCCCccc-------cccchhh
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKY-VDVGGKKLKLAIWDTAGQER-------FRTLTSS   81 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~l~D~~g~~~-------~~~~~~~   81 (210)
                      ...+++|+++|..|+|||||+|+|+.+...+... ..+.+..... ..+++  -.+.|||+||-..       ++.....
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence            3467999999999999999999999776655443 2222222111 12233  4589999999443       6777788


Q ss_pred             cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc-------eecHHHHHHHHH------
Q 028329           82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER-------VVTKKEGINFAR------  148 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-------~~~~~~~~~~~~------  148 (210)
                      .+...|.++++.+..|+.--..... |...+..   ..+.++++++|.+|...+-       ......++.+..      
T Consensus       114 ~l~~~DLvL~l~~~~draL~~d~~f-~~dVi~~---~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~  189 (296)
T COG3596         114 YLPKLDLVLWLIKADDRALGTDEDF-LRDVIIL---GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL  189 (296)
T ss_pred             HhhhccEEEEeccCCCccccCCHHH-HHHHHHh---ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence            8899999999999988753222222 4444332   2347899999999985431       111111111111      


Q ss_pred             --Hh--CCcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329          149 --EY--GCLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       149 --~~--~~~~~~~sa~~~~~i~~~~~~l~~~~~~  178 (210)
                        ..  =.+++..+.+.+-|++++...+++.+..
T Consensus       190 ~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~  223 (296)
T COG3596         190 GRLFQEVKPVVAVSGRLPWGLKELVRALITALPV  223 (296)
T ss_pred             HHHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence              11  2357888889999999999999988753

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.54  E-value=1.3e-13  Score=109.39  Aligned_cols=160  Identities=20%  Similarity=0.220  Sum_probs=116.1

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCC--------------CCCCCCceeeeEEEEEEE-----CCeEEEEEEEeCCCcc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNF--------------EELSPTIGVDFKVKYVDV-----GGKKLKLAIWDTAGQE   73 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~   73 (210)
                      .--+..++.+-.=|||||..||.....              .+.....|.|+....+.+     +|..+.++|+|||||-
T Consensus         8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV   87 (603)
T COG0481           8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV   87 (603)
T ss_pred             hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence            345677888899999999999863321              111113344444333322     5678999999999999


Q ss_pred             ccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc
Q 028329           74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL  153 (210)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  153 (210)
                      .|.......+..|.+.++|+|++..-.-+.+.+ ....+.     .+.-++-|.||+||+.......  ..++-.-.|++
T Consensus        88 DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN-~YlAle-----~~LeIiPViNKIDLP~Adperv--k~eIe~~iGid  159 (603)
T COG0481          88 DFSYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLALE-----NNLEIIPVLNKIDLPAADPERV--KQEIEDIIGID  159 (603)
T ss_pred             ceEEEehhhHhhCCCcEEEEECccchHHHHHHH-HHHHHH-----cCcEEEEeeecccCCCCCHHHH--HHHHHHHhCCC
Confidence            999888888999999999999999877777777 333343     3577899999999986643322  12223334553


Q ss_pred             ---EEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028329          154 ---FIECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       154 ---~~~~sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                         .+.+|||+|.||+++++.|.+.+....
T Consensus       160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~  189 (603)
T COG0481         160 ASDAVLVSAKTGIGIEDVLEAIVEKIPPPK  189 (603)
T ss_pred             cchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence               899999999999999999999986555

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.53  E-value=4.2e-13  Score=109.24  Aligned_cols=168  Identities=17%  Similarity=0.247  Sum_probs=119.8

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEEC--CeEEEEEEEeCCCccccccchhhcccCc----
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVG--GKKLKLAIWDTAGQERFRTLTSSYYRGA----   86 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~----   86 (210)
                      ..-.|+|+|..++|||||+.+|.+...  ..++.+.+|....+.-+  ....++.+|.+.|...+..+....+...    
T Consensus        24 ~~k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~  101 (472)
T PF05783_consen   24 SEKSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN  101 (472)
T ss_pred             CCceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence            346899999999999999999986543  23345555544443222  2346789999998888888877766632    


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhhcc-------------------------------------------------
Q 028329           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYST-------------------------------------------------  117 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------------------------------------------------  117 (210)
                      -++|+|+|.+.|..+..-...|...++....                                                 
T Consensus       102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~  181 (472)
T PF05783_consen  102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES  181 (472)
T ss_pred             eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence            5789999999998766555546554433310                                                 


Q ss_pred             ------------CCCCcEEEEEeCCCCC----CCc-------eecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHH
Q 028329          118 ------------NQDCIKLLVGNKVDKE----SER-------VVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVL  174 (210)
Q Consensus       118 ------------~~~~piivv~nK~D~~----~~~-------~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~  174 (210)
                                  +.++|++||.+|.|..    ...       ....+..+.++..+|+.+|.+|++...+++.++.+|..
T Consensus       182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h  261 (472)
T PF05783_consen  182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILH  261 (472)
T ss_pred             ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHH
Confidence                        0147999999999962    111       12233467778888999999999999999999999999


Q ss_pred             HHHcCCCc
Q 028329          175 KILDTPSL  182 (210)
Q Consensus       175 ~~~~~~~~  182 (210)
                      .+....-.
T Consensus       262 ~l~~~~f~  269 (472)
T PF05783_consen  262 RLYGFPFK  269 (472)
T ss_pred             HhccCCCC
Confidence            98765543

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.50  E-value=5.7e-13  Score=102.40  Aligned_cols=122  Identities=17%  Similarity=0.160  Sum_probs=71.3

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCc--eeeeEEEEEEECCeEEEEEEEeCCCccccccc-------hhh
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTI--GVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL-------TSS   81 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~   81 (210)
                      ....++|+++|.+|+||||++|+|++..........  +.+........+  ...+.+|||||.......       ...
T Consensus        35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~  112 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKR  112 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence            356799999999999999999999987654333322  222222222333  467899999995543211       111


Q ss_pred             cc--cCccEEEEEEeCCCcccHHHHHHHHHHHHhh-hccCCCCcEEEEEeCCCCCCC
Q 028329           82 YY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDL-YSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        82 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~piivv~nK~D~~~~  135 (210)
                      ++  ...|+++||.+++... +.......+..+.. +....-.+.+|++|+.|...+
T Consensus       113 ~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p  168 (313)
T TIGR00991       113 FLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP  168 (313)
T ss_pred             HhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence            11  2589999996655321 21111112222222 112233578999999997543

>PRK12740 elongation factor G; Reviewed

Probab=99.49  E-value=2.2e-13  Score=117.00  Aligned_cols=108  Identities=19%  Similarity=0.246  Sum_probs=73.7

Q ss_pred             EcCCCCcHHHHHHHHhcCCCCCCC--------------C---CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhc
Q 028329           20 IGDSGVGKSSLLLSFTSDNFEELS--------------P---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSY   82 (210)
Q Consensus        20 ~G~~~~GKTtli~~l~~~~~~~~~--------------~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~   82 (210)
                      +|++++|||||+++|.........              .   ..+.+.......+......+.+||+||+..+...+...
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            599999999999999533211000              0   12233333333333345789999999998877777888


Q ss_pred             ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329           83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~  133 (210)
                      +..+|++++|+|++.......... |. .+.    ..++|+++|+||+|+.
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~~~-~~-~~~----~~~~p~iiv~NK~D~~  125 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTETV-WR-QAE----KYGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHHHH-HH-HHH----HcCCCEEEEEECCCCC
Confidence            899999999999998765543322 32 222    2468999999999975

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.49  E-value=4.4e-14  Score=104.87  Aligned_cols=178  Identities=15%  Similarity=0.141  Sum_probs=104.3

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeE--EEE------EE------------------------
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFK--VKY------VD------------------------   56 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~--~~~------~~------------------------   56 (210)
                      ....+++.|+++|..|||||||++||...-.....|.......  +..      +.                        
T Consensus        14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T   93 (366)
T KOG1532|consen   14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT   93 (366)
T ss_pred             ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence            3456788999999999999999999964432222211111100  000      00                        


Q ss_pred             -----------------ECCeEEEEEEEeCCCccc-cccc-----hhhcc--cCccEEEEEEeCC---CcccHHHHHHHH
Q 028329           57 -----------------VGGKKLKLAIWDTAGQER-FRTL-----TSSYY--RGAQGIIMVYDVT---RRDTFTNLSDVW  108 (210)
Q Consensus        57 -----------------~~~~~~~~~l~D~~g~~~-~~~~-----~~~~~--~~~d~~i~v~d~~---~~~s~~~~~~~~  108 (210)
                                       -....+...++||||+-+ +...     ....+  ...-+++||+|..   ++.+|..... +
T Consensus        94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMl-Y  172 (366)
T KOG1532|consen   94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNML-Y  172 (366)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHH-H
Confidence                             011234688999999643 2211     11111  2346888999954   4566666654 2


Q ss_pred             HHHHhhhccCCCCcEEEEEeCCCCCCCc-----eecHHHHHHHHH---------------------HhCCcEEEEccCCC
Q 028329          109 AKEIDLYSTNQDCIKLLVGNKVDKESER-----VVTKKEGINFAR---------------------EYGCLFIECSAKTR  162 (210)
Q Consensus       109 ~~~~~~~~~~~~~piivv~nK~D~~~~~-----~~~~~~~~~~~~---------------------~~~~~~~~~sa~~~  162 (210)
                      .--+.-   +...|+|++.||.|+....     ..+.+..+....                     -.++..+.+|+.+|
T Consensus       173 AcSily---ktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG  249 (366)
T KOG1532|consen  173 ACSILY---KTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTG  249 (366)
T ss_pred             HHHHHH---hccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccC
Confidence            222222   4679999999999985432     111111111111                     01466899999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCcccccccCc
Q 028329          163 VNVQQCFEELVLKILDTPSLLAEGSKGL  190 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~  190 (210)
                      .|.+++|..+...+-+.........++.
T Consensus       250 ~G~ddf~~av~~~vdEy~~~ykp~~Ek~  277 (366)
T KOG1532|consen  250 EGFDDFFTAVDESVDEYEEEYKPEYEKK  277 (366)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            9999999999988876665554444333

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.49  E-value=4.5e-13  Score=99.43  Aligned_cols=163  Identities=15%  Similarity=0.177  Sum_probs=94.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---CceeeeEEEEEEECCeEEEEEEEeCCCcccccc-------ch----h
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT-------LT----S   80 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~----~   80 (210)
                      ++|+++|.+||||||++|.+++........   ....+........++  ..+.++||||......       ..    .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999887644331   222223333345555  4578889999422111       11    1


Q ss_pred             hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec-------HHHHHHHHHHhCCc
Q 028329           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT-------KKEGINFAREYGCL  153 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~  153 (210)
                      ....+.|++++|+.+... +...... +......+....-..++||.|..|......+.       ......+....+-.
T Consensus        79 ~~~~g~ha~llVi~~~r~-t~~~~~~-l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRF-TEEDREV-LELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--SHHHHHH-HHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecCcc-hHHHHHH-HHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            124568999999999833 3222211 22222222222334678888988864443311       12234555566777


Q ss_pred             EEEEccC------CCCCHHHHHHHHHHHHHcCCC
Q 028329          154 FIECSAK------TRVNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       154 ~~~~sa~------~~~~i~~~~~~l~~~~~~~~~  181 (210)
                      +..++.+      ....+.++++.+-+.+.++.-
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g  190 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGG  190 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence            7777766      345789999999888888763

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.49  E-value=5.6e-13  Score=100.79  Aligned_cols=126  Identities=20%  Similarity=0.218  Sum_probs=73.8

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc---c-------
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT---L-------   78 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~-------   78 (210)
                      +.....++|+++|.+|||||||+|+|++............+.....+........+.+|||||......   .       
T Consensus        26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~  105 (249)
T cd01853          26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSS  105 (249)
T ss_pred             hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence            345677999999999999999999999877644433222222222222222335689999999654421   1       


Q ss_pred             hhhccc--CccEEEEEEeCCCcccHHHHHHHHHHHHhh-hccCCCCcEEEEEeCCCCCCC
Q 028329           79 TSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDL-YSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        79 ~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~piivv~nK~D~~~~  135 (210)
                      ...++.  ..|++++|..++... +.......+..+.. +....-.++++|.||+|...+
T Consensus       106 I~~~l~~~~idvIL~V~rlD~~r-~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p  164 (249)
T cd01853         106 IKRYLKKKTPDVVLYVDRLDMYR-RDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHHHhccCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence            112222  578888887666432 11121113333332 111223578999999998533

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>cd00066 G-alpha G protein alpha subunit

Probab=99.48  E-value=8.2e-13  Score=103.62  Aligned_cols=119  Identities=19%  Similarity=0.198  Sum_probs=87.0

Q ss_pred             eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCc----------ccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028329           60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK  129 (210)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~piivv~nK  129 (210)
                      ....+.+||++|+...+..|..++.+++++++|+|+++.          +.+......|...+.. ....+.|++|++||
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~-~~~~~~pill~~NK  237 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS-RWFANTSIILFLNK  237 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC-ccccCCCEEEEccC
Confidence            456789999999999999999999999999999999975          4566666645554443 33467999999999


Q ss_pred             CCCCCCc----------------eecHHHHHHHHHH----------hCCcEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329          130 VDKESER----------------VVTKKEGINFARE----------YGCLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       130 ~D~~~~~----------------~~~~~~~~~~~~~----------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      .|+-.+.                .-+.+.+..+...          ..+.+..++|.+..++..+|+.+.+.++..
T Consensus       238 ~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~  313 (317)
T cd00066         238 KDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN  313 (317)
T ss_pred             hHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence            9962110                1233444444432          123367788999999999999998887654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK00007 elongation factor G; Reviewed

Probab=99.48  E-value=1e-12  Score=113.04  Aligned_cols=120  Identities=15%  Similarity=0.185  Sum_probs=80.7

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCC--CC---CC------------CCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF--EE---LS------------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE   73 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~--~~---~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (210)
                      .+.-.+|+++|++++|||||+++|+...-  ..   ..            ...+.+.......+......+.++||||+.
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~   86 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV   86 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence            45567999999999999999999973111  00   00            123334433333333345678999999988


Q ss_pred             ccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329           74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~  136 (210)
                      .+.......+..+|++++|+|+........... |. .+.    ..++|.++++||+|+....
T Consensus        87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~-~~-~~~----~~~~p~iv~vNK~D~~~~~  143 (693)
T PRK00007         87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETV-WR-QAD----KYKVPRIAFVNKMDRTGAD  143 (693)
T ss_pred             HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHH-HH-HHH----HcCCCEEEEEECCCCCCCC
Confidence            776667777888999999999887644333222 32 222    2457889999999987543

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.44  E-value=5.8e-12  Score=102.28  Aligned_cols=166  Identities=24%  Similarity=0.284  Sum_probs=119.4

Q ss_pred             ccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028329            8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA   86 (210)
Q Consensus         8 ~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (210)
                      +......+.++++|+.++|||.|++.+.+..+...+. +....+....+...+....+.+-|.+-. ....+.... ..|
T Consensus       419 ~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~c  496 (625)
T KOG1707|consen  419 KQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AAC  496 (625)
T ss_pred             ccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-cee
Confidence            3455678999999999999999999999988766432 4444444455555577777888888754 222222222 679


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc-EEEEccCCCCCH
Q 028329           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNV  165 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i  165 (210)
                      |+++++||.+++.+|..+...+.....    ....|+++|++|.|+++......-...+++..++++ .+.+|.+...+ 
T Consensus       497 Dv~~~~YDsS~p~sf~~~a~v~~~~~~----~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-  571 (625)
T KOG1707|consen  497 DVACLVYDSSNPRSFEYLAEVYNKYFD----LYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-  571 (625)
T ss_pred             eeEEEecccCCchHHHHHHHHHHHhhh----ccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-
Confidence            999999999999999988773333222    367999999999999765533222237788889986 67778775444 


Q ss_pred             HHHHHHHHHHHHcCC
Q 028329          166 QQCFEELVLKILDTP  180 (210)
Q Consensus       166 ~~~~~~l~~~~~~~~  180 (210)
                      .++|..|..+.+-..
T Consensus       572 ~~lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  572 NELFIKLATMAQYPH  586 (625)
T ss_pred             chHHHHHHHhhhCCC
Confidence            899999998876555

>PRK13768 GTPase; Provisional

Probab=99.44  E-value=1.3e-12  Score=99.41  Aligned_cols=115  Identities=18%  Similarity=0.151  Sum_probs=71.2

Q ss_pred             EEEEEeCCCcccc---ccchhhccc---C--ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329           63 KLAIWDTAGQERF---RTLTSSYYR---G--AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        63 ~~~l~D~~g~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~  134 (210)
                      .+.+||+||..+.   +..+..+++   .  .+++++|+|+....+.......+...+.... ..+.|+++|+||+|+..
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS  176 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence            5899999997553   333333322   2  8999999999765543333222222211111 24689999999999864


Q ss_pred             CceecHH--HHH------------------------HHHHHhC--CcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329          135 ERVVTKK--EGI------------------------NFAREYG--CLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       135 ~~~~~~~--~~~------------------------~~~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      .......  ...                        ......+  .+++.+|++++.|+++++++|.+.+..
T Consensus       177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~  248 (253)
T PRK13768        177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG  248 (253)
T ss_pred             chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence            4322110  000                        1112223  468999999999999999999887743

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.44  E-value=3.6e-13  Score=116.18  Aligned_cols=116  Identities=17%  Similarity=0.249  Sum_probs=79.6

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcC---------------CCCCCCCCceeee----EEEEEEECCeEEEEEEEeCCCc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSD---------------NFEELSPTIGVDF----KVKYVDVGGKKLKLAIWDTAGQ   72 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~---------------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~D~~g~   72 (210)
                      +...+|+++|+.++|||||+++|+..               ++.......+.+.    ....+.+++..+.+.+|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            45689999999999999999999742               1111100122222    2222335677889999999999


Q ss_pred             cccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329           73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~  133 (210)
                      ..+.......++.+|++++|+|+........... |....     ..+.|.++++||+|..
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~-~~~~~-----~~~~p~ivviNKiD~~  151 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETV-LRQAL-----KENVKPVLFINKVDRL  151 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHH-HHHHH-----HcCCCEEEEEEChhcc
Confidence            8888777888999999999999987533222211 22211     2356788999999985

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=8.1e-13  Score=100.26  Aligned_cols=190  Identities=15%  Similarity=0.141  Sum_probs=128.5

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeE--------------------EEEEEE--C----CeEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFK--------------------VKYVDV--G----GKKLK   63 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~--~~~~~~~--------------------~~~~~~--~----~~~~~   63 (210)
                      .-.++|.++|+..=|||||.++|.+-.....+.  ..+.++.                    ...-..  .    .---.
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            346899999999999999999997643211111  0000000                    000000  0    11235


Q ss_pred             EEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc--eecHH
Q 028329           64 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER--VVTKK  141 (210)
Q Consensus        64 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~  141 (210)
                      +.|.|.||++-.-+....-..-.|+.++|++++.+..-.+-.+ .+..++..   .-..++++-||.|+...+  ...++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~E-Hl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~  163 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTRE-HLMALEII---GIKNIIIVQNKIDLVSRERALENYE  163 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHH-HHHHHhhh---ccceEEEEecccceecHHHHHHHHH
Confidence            7888999998877777666667899999999997543333322 22223221   125688999999996443  34566


Q ss_pred             HHHHHHHH---hCCcEEEEccCCCCCHHHHHHHHHHHHHcCCCcccccccCcccccccCCCCccCcc
Q 028329          142 EGINFARE---YGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAA  205 (210)
Q Consensus       142 ~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (210)
                      +++.|.+.   .+.+++++||..+.||+-+++.|.+.+........++....-...|...++.++..
T Consensus       164 qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~  230 (415)
T COG5257         164 QIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDKPPRMYVARSFDVNKPGTPPE  230 (415)
T ss_pred             HHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCCCceEEEEeecccCCCCCCHH
Confidence            77777664   36789999999999999999999999988888887777777777777777766543

>smart00275 G_alpha G protein alpha subunit

Probab=99.42  E-value=5.8e-12  Score=99.64  Aligned_cols=118  Identities=16%  Similarity=0.189  Sum_probs=84.7

Q ss_pred             EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCc----------ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028329           61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV  130 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~  130 (210)
                      ...+.+||.+|+...+..|..++.+++++++|+|+++.          ..+......|...+.. ....+.|++|++||.
T Consensus       183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~-~~~~~~piil~~NK~  261 (342)
T smart00275      183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNS-RWFANTSIILFLNKI  261 (342)
T ss_pred             CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcC-ccccCCcEEEEEecH
Confidence            45689999999999999999999999999999999974          3566666645544443 334679999999999


Q ss_pred             CCCCCc---------------eecHHHHHHHHHH----h-------CCcEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329          131 DKESER---------------VVTKKEGINFARE----Y-------GCLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       131 D~~~~~---------------~~~~~~~~~~~~~----~-------~~~~~~~sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      |+..+.               .-+.+.+..+...    .       .+.++.++|.+..++..+|+.+.+.+.+.
T Consensus       262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~  336 (342)
T smart00275      262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR  336 (342)
T ss_pred             HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence            973110               0123333333322    1       13357788999999999999988887654

Subunit of G proteins that contains the guanine nucleotide binding site

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.41  E-value=5e-12  Score=111.18  Aligned_cols=142  Identities=18%  Similarity=0.164  Sum_probs=89.4

Q ss_pred             cHHHHHHHHhcCCCCCCCC---CceeeeEEEEEEECCe--------------EEEEEEEeCCCccccccchhhcccCccE
Q 028329           26 GKSSLLLSFTSDNFEELSP---TIGVDFKVKYVDVGGK--------------KLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        26 GKTtli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~--------------~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      +||||+.++.+...+....   |.....+.........              ...+.||||||++.+..+....+..+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            4999999999776543222   2222222222211000              0138999999999998877777888999


Q ss_pred             EEEEEeCCCc---ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec------------HHHHHH--------
Q 028329           89 IIMVYDVTRR---DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT------------KKEGIN--------  145 (210)
Q Consensus        89 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~------------~~~~~~--------  145 (210)
                      +++|+|+++.   .+++.+     ..+..    .++|+++|+||+|+...+...            .+....        
T Consensus       553 vlLVVDa~~Gi~~qT~e~I-----~~lk~----~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~  623 (1049)
T PRK14845        553 AVLVVDINEGFKPQTIEAI-----NILRQ----YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE  623 (1049)
T ss_pred             EEEEEECcccCCHhHHHHH-----HHHHH----cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence            9999999873   333322     22222    358999999999985432210            011000        


Q ss_pred             H---HHH-------------h--CCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329          146 F---ARE-------------Y--GCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       146 ~---~~~-------------~--~~~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                      +   ...             +  .++++++||++|.|+++++.+|....
T Consensus       624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~  672 (1049)
T PRK14845        624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA  672 (1049)
T ss_pred             HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence            0   111             1  35689999999999999998876543

>PTZ00258 GTP-binding protein; Provisional

Probab=99.40  E-value=7.6e-12  Score=99.69  Aligned_cols=84  Identities=21%  Similarity=0.194  Sum_probs=54.7

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEE--EEECCe---------------EEEEEEEeCCCccc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKY--VDVGGK---------------KLKLAIWDTAGQER   74 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~---------------~~~~~l~D~~g~~~   74 (210)
                      ...++|.++|.||||||||+|+|++... .....+++|.....  +.+...               ...+.++|+||...
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~   97 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK   97 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence            5678999999999999999999987653 33223333322222  222211               23589999999432


Q ss_pred             -------cccchhhcccCccEEEEEEeCC
Q 028329           75 -------FRTLTSSYYRGAQGIIMVYDVT   96 (210)
Q Consensus        75 -------~~~~~~~~~~~~d~~i~v~d~~   96 (210)
                             +.......++.+|++++|+|..
T Consensus        98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                   1122334567899999999974

>TIGR00101 ureG urease accessory protein UreG

Probab=99.40  E-value=6.2e-12  Score=92.24  Aligned_cols=102  Identities=21%  Similarity=0.118  Sum_probs=64.4

Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH
Q 028329           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK  141 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~  141 (210)
                      ....++++.|..-.......   -+|.++.|+|+.+.++....   +...+       ...-++++||+|+.+......+
T Consensus        92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~~---~~~qi-------~~ad~~~~~k~d~~~~~~~~~~  158 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPRK---GGPGI-------TRSDLLVINKIDLAPMVGADLG  158 (199)
T ss_pred             CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhhh---hHhHh-------hhccEEEEEhhhccccccccHH
Confidence            45667788774322222221   26889999999876653211   11111       1223799999999743222333


Q ss_pred             HHHHHHHH--hCCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329          142 EGINFARE--YGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       142 ~~~~~~~~--~~~~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                      ......+.  .+.+++++|+++|.|++++|+++.+.+
T Consensus       159 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       159 VMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            33334443  457899999999999999999998765

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.39  E-value=5.2e-12  Score=97.05  Aligned_cols=152  Identities=22%  Similarity=0.182  Sum_probs=106.5

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCC--------------------------------CCCCCCceeeeEEEEEEEC
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF--------------------------------EELSPTIGVDFKVKYVDVG   58 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~   58 (210)
                      ....+|++.+|...=||||||-||+...-                                -+.....|.|+.+....+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            45679999999999999999999964310                                0001134556666666667


Q ss_pred             CeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee
Q 028329           59 GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV  138 (210)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~  138 (210)
                      ..+-+|.+-||||+++|....-.-...||..|+++|+...-..+.-+.   ..+...  -.=..++|++||+||..-.+.
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRH---s~I~sL--LGIrhvvvAVNKmDLvdy~e~  157 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRH---SFIASL--LGIRHVVVAVNKMDLVDYSEE  157 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHH---HHHHHH--hCCcEEEEEEeeecccccCHH
Confidence            777889999999999999888777888999999999965432222222   222211  122578899999999765544


Q ss_pred             cHH----HHHHHHHHhCC---cEEEEccCCCCCHHH
Q 028329          139 TKK----EGINFAREYGC---LFIECSAKTRVNVQQ  167 (210)
Q Consensus       139 ~~~----~~~~~~~~~~~---~~~~~sa~~~~~i~~  167 (210)
                      ..+    +...++..+++   .++++||..|.|+..
T Consensus       158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            433    34556666665   399999999998754

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=2.4e-11  Score=93.30  Aligned_cols=163  Identities=18%  Similarity=0.181  Sum_probs=96.6

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCC----CC--CCCCceeeeEEE--EEE-------ECCeEEEEEEEeCCCcccccc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNF----EE--LSPTIGVDFKVK--YVD-------VGGKKLKLAIWDTAGQERFRT   77 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~----~~--~~~~~~~~~~~~--~~~-------~~~~~~~~~l~D~~g~~~~~~   77 (210)
                      ..+++.++|+..||||||.++|..-..    ..  .+.+.+.+...-  .+.       -.+...++.++|+||+...-+
T Consensus         6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR   85 (522)
T KOG0461|consen    6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR   85 (522)
T ss_pred             ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence            349999999999999999999964321    11  111222222211  111       145567899999999866555


Q ss_pred             chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee---cHHHHHHHH---HHh-
Q 028329           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV---TKKEGINFA---REY-  150 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~~---~~~-  150 (210)
                      .......-.|..++|+|+.....-....-..+-.+.      ....+||.||.|...+...   .........   ... 
T Consensus        86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~------c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~  159 (522)
T KOG0461|consen   86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL------CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG  159 (522)
T ss_pred             HHHhhhheeeeeeEEEehhcccccccchhhhhhhhh------ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence            555555556899999999876554444432333222      2345788899887443211   111112222   222 


Q ss_pred             ---CCcEEEEccCCC----CCHHHHHHHHHHHHHcCCC
Q 028329          151 ---GCLFIECSAKTR----VNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       151 ---~~~~~~~sa~~~----~~i~~~~~~l~~~~~~~~~  181 (210)
                         ..|++++|+..|    .++.++...+..++.+.+.
T Consensus       160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R  197 (522)
T KOG0461|consen  160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR  197 (522)
T ss_pred             cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc
Confidence               367999999999    4555555555555554443

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.38  E-value=1.1e-12  Score=104.85  Aligned_cols=165  Identities=17%  Similarity=0.131  Sum_probs=108.4

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc-----cccc----hhhc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER-----FRTL----TSSY   82 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----~~~~----~~~~   82 (210)
                      ...-.++++|.|++|||||++.++..+. +..|...+|......+++..-..++++||||.-.     ....    .-+.
T Consensus       166 p~trTlllcG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL  244 (620)
T KOG1490|consen  166 PNTRTLLVCGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL  244 (620)
T ss_pred             CCcCeEEEecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence            3457899999999999999999986654 2333333333333345556666778889999321     1111    1112


Q ss_pred             ccCccEEEEEEeCCC--cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHH--HHHHHHHhC-CcEEEE
Q 028329           83 YRGAQGIIMVYDVTR--RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKE--GINFAREYG-CLFIEC  157 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~--~~~~~~~~~-~~~~~~  157 (210)
                      ..--.+|+|++|++.  ..|...-.. ++..++  ....+.|+|+|.||+|......++.+.  ..+.....+ ++++++
T Consensus       245 AHLraaVLYfmDLSe~CGySva~Qvk-LfhsIK--pLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t  321 (620)
T KOG1490|consen  245 AHLRSAVLYFMDLSEMCGYSVAAQVK-LYHSIK--PLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT  321 (620)
T ss_pred             HHhhhhheeeeechhhhCCCHHHHHH-HHHHhH--HHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence            223468999999985  455555555 333343  234678999999999997766665443  333333444 889999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcCC
Q 028329          158 SAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       158 sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      |+.+.+|+-++-...++.++..+
T Consensus       322 S~~~eegVm~Vrt~ACe~LLa~R  344 (620)
T KOG1490|consen  322 SCVQEEGVMDVRTTACEALLAAR  344 (620)
T ss_pred             cccchhceeeHHHHHHHHHHHHH
Confidence            99999999998888877776543

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.37  E-value=5.7e-12  Score=95.37  Aligned_cols=96  Identities=20%  Similarity=0.231  Sum_probs=75.2

Q ss_pred             cccccchhhcccCccEEEEEEeCCCcc-cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC
Q 028329           73 ERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG  151 (210)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~  151 (210)
                      +.+..+.+.+++++|++++|+|++++. ++..+.. |+..+..    .++|+++|+||+|+...+....+... .....+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r-~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~-~~~~~g   97 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDR-FLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLD-IYRNIG   97 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHH-HHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHH-HHHHCC
Confidence            455667777899999999999999887 7878766 7766543    57899999999999655444434443 344578


Q ss_pred             CcEEEEccCCCCCHHHHHHHHHH
Q 028329          152 CLFIECSAKTRVNVQQCFEELVL  174 (210)
Q Consensus       152 ~~~~~~sa~~~~~i~~~~~~l~~  174 (210)
                      .+++++||+++.|++++|+.+..
T Consensus        98 ~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        98 YQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             CeEEEEecCCchhHHHHHhhhcC
Confidence            89999999999999999988753

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.37  E-value=3.1e-12  Score=86.69  Aligned_cols=115  Identities=30%  Similarity=0.381  Sum_probs=78.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|+.|+|||+|+.++....+...+ +. .+..                       +........+.++.+++|++
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~-~~-~t~~-----------------------~~~~~~~~~~s~~~~~~v~~   55 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVP-TV-FTIG-----------------------IDVYDPTSYESFDVVLQCWR   55 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccC-ce-ehhh-----------------------hhhccccccCCCCEEEEEEE
Confidence            48999999999999999999877664322 11 1111                       22233445667899999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  166 (210)
                      .++.++++.+   |...+.. ..+.++|.++++||.|+........++.        ..++++|++++.++.
T Consensus        56 ~~~~~s~~~~---~~~~i~~-~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~  115 (124)
T smart00010       56 VDDRDSADNK---NVPEVLV-GNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE  115 (124)
T ss_pred             ccCHHHHHHH---hHHHHHh-cCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence            9999988765   5555554 3456789999999999854333333332        234678888888874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.34  E-value=4.7e-11  Score=94.46  Aligned_cols=156  Identities=15%  Similarity=0.170  Sum_probs=97.7

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcC----CCC-----------CCCCCce---eeeE-------EEEEE-ECCeEEEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSD----NFE-----------ELSPTIG---VDFK-------VKYVD-VGGKKLKLAI   66 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~----~~~-----------~~~~~~~---~~~~-------~~~~~-~~~~~~~~~l   66 (210)
                      ..+-|.++|+.++|||||+++|.+.    ...           -.....|   +|..       ...+. .++...++.+
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            4688999999999999999999877    322           1112333   2222       22222 2566788999


Q ss_pred             EeCCCcccc-----cc--c----------------------hhhccc-CccEEEEEE-eCC----CcccHHHHHHHHHHH
Q 028329           67 WDTAGQERF-----RT--L----------------------TSSYYR-GAQGIIMVY-DVT----RRDTFTNLSDVWAKE  111 (210)
Q Consensus        67 ~D~~g~~~~-----~~--~----------------------~~~~~~-~~d~~i~v~-d~~----~~~s~~~~~~~~~~~  111 (210)
                      +|++|...-     ..  .                      ....+. .+|+.++|. |.+    .++.+......+...
T Consensus        96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e  175 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE  175 (492)
T ss_pred             EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence            999982110     00  0                      223344 789999988 764    123455555557777


Q ss_pred             HhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccC--CCCCHHHHHHHHHH
Q 028329          112 IDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK--TRVNVQQCFEELVL  174 (210)
Q Consensus       112 ~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~--~~~~i~~~~~~l~~  174 (210)
                      ++.    .++|++++.|+.|.....  ..+....+...++++++.+|+.  ...+|..++..++.
T Consensus       176 Lk~----~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~  234 (492)
T TIGR02836       176 LKE----LNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLY  234 (492)
T ss_pred             HHh----cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHh
Confidence            664    689999999999943222  3333445556778887777764  44466666655544

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PTZ00416 elongation factor 2; Provisional

Probab=99.33  E-value=5.9e-12  Score=110.12  Aligned_cols=117  Identities=20%  Similarity=0.185  Sum_probs=78.9

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---------------CceeeeEE--EEEEEC--------CeEEEEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP---------------TIGVDFKV--KYVDVG--------GKKLKLA   65 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~---------------~~~~~~~~--~~~~~~--------~~~~~~~   65 (210)
                      .+...+|+++|+.++|||||+++|+.........               ..+.+...  ..+.+.        +....+.
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            3455699999999999999999998532111000               11222221  122222        2256789


Q ss_pred             EEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329           66 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~  133 (210)
                      |+||||+..+.......++.+|++|+|+|+.+.-..... ..|.. +.    ..++|+++++||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~-~~----~~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQ-AL----QERIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHH-HH----HcCCCEEEEEEChhhh
Confidence            999999998888888888999999999999876433322 21332 22    2458999999999986

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.32  E-value=6.2e-12  Score=110.17  Aligned_cols=118  Identities=17%  Similarity=0.197  Sum_probs=81.2

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCC------------CCCC---CceeeeE--EEEEEE--------------C
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE------------ELSP---TIGVDFK--VKYVDV--------------G   58 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~------------~~~~---~~~~~~~--~~~~~~--------------~   58 (210)
                      +.+...+|+++|+.++|||||+.+|+.....            ...+   ..+.++.  ...+.+              .
T Consensus        15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~   94 (843)
T PLN00116         15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD   94 (843)
T ss_pred             CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence            3456679999999999999999999754321            0000   1122222  112222              1


Q ss_pred             CeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329           59 GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~  133 (210)
                      +....+.++||||+..|.......++.+|++|+|+|+...-....... |....     ..++|+++++||+|+.
T Consensus        95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~-~~~~~-----~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQAL-----GERIRPVLTVNKMDRC  163 (843)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHH-HHHHH-----HCCCCEEEEEECCccc
Confidence            236778999999999998888888899999999999987654333222 43332     3468999999999986

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.32  E-value=3.3e-11  Score=89.15  Aligned_cols=151  Identities=16%  Similarity=0.096  Sum_probs=84.4

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCC------------CCCCCc---eeeeEEEEEEE------------------C
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE------------ELSPTI---GVDFKVKYVDV------------------G   58 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~------------~~~~~~---~~~~~~~~~~~------------------~   58 (210)
                      .....|.++|+.|+|||||++++......            ......   ........+.-                  .
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~   99 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP   99 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence            45788999999999999999998643110            000000   00000000000                  0


Q ss_pred             CeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee
Q 028329           59 GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV  138 (210)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~  138 (210)
                      .....+.++|+.|.-. .+.  .+....+..+.|+|+.+.+....  . ...       ....|.++++||+|+......
T Consensus       100 ~~~~d~IiIEt~G~l~-~~~--~~~~~~~~~i~Vvd~~~~d~~~~--~-~~~-------~~~~a~iiv~NK~Dl~~~~~~  166 (207)
T TIGR00073       100 LDDIDLLFIENVGNLV-CPA--DFDLGEHMRVVLLSVTEGDDKPL--K-YPG-------MFKEADLIVINKADLAEAVGF  166 (207)
T ss_pred             cCCCCEEEEecCCCcC-CCc--ccccccCeEEEEEecCcccchhh--h-hHh-------HHhhCCEEEEEHHHccccchh
Confidence            0123566777777211 111  11122455567777765543111  1 111       123567999999999654332


Q ss_pred             cHHHHHHHHHHh--CCcEEEEccCCCCCHHHHHHHHHHH
Q 028329          139 TKKEGINFAREY--GCLFIECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       139 ~~~~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~  175 (210)
                      ............  ..+++.+|++++.|++++|+++.+.
T Consensus       167 ~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       167 DVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            233344444443  3789999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.30  E-value=2.5e-11  Score=95.04  Aligned_cols=104  Identities=13%  Similarity=0.130  Sum_probs=66.4

Q ss_pred             EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--
Q 028329           61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--  138 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~--  138 (210)
                      .+.+.|+||+|...-...   ....+|.++++.+....+.+.....   ..+.       ..-++|+||+|+......  
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-------~aDIiVVNKaDl~~~~~a~~  214 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-------LADLIVINKADGDNKTAARR  214 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-------hhheEEeehhcccchhHHHH
Confidence            467899999997633322   4567999999987544444433321   1111       223899999998643321  


Q ss_pred             cHHHHHHHHHH-------hCCcEEEEccCCCCCHHHHHHHHHHHHH
Q 028329          139 TKKEGINFARE-------YGCLFIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       139 ~~~~~~~~~~~-------~~~~~~~~sa~~~~~i~~~~~~l~~~~~  177 (210)
                      ...+.......       +..+++.+||+++.|++++++.+.+.+.
T Consensus       215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            11222222221       2357999999999999999999988754

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.30  E-value=9.9e-11  Score=93.10  Aligned_cols=161  Identities=18%  Similarity=0.245  Sum_probs=113.8

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCC--CCC------------CC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDN--FEE------------LS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL   78 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~--~~~------------~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   78 (210)
                      .-+|+++-+..=|||||+..|+.+.  |.+            .- ...|.|+-...-.+......+.++||||+..|...
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence            4579999999999999999997543  211            11 14456666666666777789999999999999999


Q ss_pred             hhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHH-------h
Q 028329           79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VTKKEGINFARE-------Y  150 (210)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~-------~  150 (210)
                      ....+.=+|++++++|+.+..- .+.+..+.+.+.     .+.+-|||+||+|.+..+. +-..++..++..       +
T Consensus        85 VERvl~MVDgvlLlVDA~EGpM-PQTrFVlkKAl~-----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL  158 (603)
T COG1217          85 VERVLSMVDGVLLLVDASEGPM-PQTRFVLKKALA-----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL  158 (603)
T ss_pred             hhhhhhhcceEEEEEEcccCCC-CchhhhHHHHHH-----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence            9999999999999999987532 111111222222     3444589999999976653 233344555544       3


Q ss_pred             CCcEEEEccCCCC----------CHHHHHHHHHHHHHcCC
Q 028329          151 GCLFIECSAKTRV----------NVQQCFEELVLKILDTP  180 (210)
Q Consensus       151 ~~~~~~~sa~~~~----------~i~~~~~~l~~~~~~~~  180 (210)
                      +++++..|++.|.          ++.-+|+.|++.+....
T Consensus       159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence            5779999998874          67778888888775554

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=5.9e-11  Score=96.58  Aligned_cols=155  Identities=21%  Similarity=0.194  Sum_probs=103.8

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcC--------------------C--C--------CCCCCCceeeeEEEEEEECC
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSD--------------------N--F--------EELSPTIGVDFKVKYVDVGG   59 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~--------------------~--~--------~~~~~~~~~~~~~~~~~~~~   59 (210)
                      .....+.++++|+..+|||||+.+|+..                    +  |        .......|.+.......++.
T Consensus       173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes  252 (603)
T KOG0458|consen  173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES  252 (603)
T ss_pred             CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence            3346799999999999999999988521                    1  1        11112556677777777778


Q ss_pred             eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcc---cHH---HHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329           60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFT---NLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~piivv~nK~D~~  133 (210)
                      ....++|+|+||+..|.+....-...+|+.++|+|++-.+   .|+   ..++ ....++. ..  -..++|++||+|+.
T Consensus       253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~-Lg--i~qlivaiNKmD~V  328 (603)
T KOG0458|consen  253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRS-LG--ISQLIVAINKMDLV  328 (603)
T ss_pred             CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHH-cC--cceEEEEeeccccc
Confidence            8889999999999888888888888999999999998532   111   1111 2222222 11  34578899999984


Q ss_pred             CCceecHHH----HHHHH-HHhC-----CcEEEEccCCCCCHHHH
Q 028329          134 SERVVTKKE----GINFA-REYG-----CLFIECSAKTRVNVQQC  168 (210)
Q Consensus       134 ~~~~~~~~~----~~~~~-~~~~-----~~~~~~sa~~~~~i~~~  168 (210)
                      .=..-..++    ...+. ...|     +.|++||+..|+|+-..
T Consensus       329 ~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  329 SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            322222222    23333 3333     45999999999987654

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.28  E-value=9.2e-11  Score=92.56  Aligned_cols=81  Identities=21%  Similarity=0.171  Sum_probs=52.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE--EEEECCe---------------EEEEEEEeCCCcccc--
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVK--YVDVGGK---------------KLKLAIWDTAGQERF--   75 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------~~~~~l~D~~g~~~~--   75 (210)
                      ++|.++|.||||||||+|+|++.. ......+++|....  .+.+...               ...+.++|+||...-  
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~   81 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS   81 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence            689999999999999999999876 33222233332211  2222221               135899999994321  


Q ss_pred             -----ccchhhcccCccEEEEEEeCC
Q 028329           76 -----RTLTSSYYRGAQGIIMVYDVT   96 (210)
Q Consensus        76 -----~~~~~~~~~~~d~~i~v~d~~   96 (210)
                           .......++.+|++++|+|+.
T Consensus        82 ~g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         82 KGEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence                 112233467899999999985

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.28  E-value=8.8e-11  Score=90.40  Aligned_cols=142  Identities=17%  Similarity=0.240  Sum_probs=77.6

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-----------CCceeeeEEEEEEECCeEEEEEEEeCCCccc-------
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-----------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQER-------   74 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------   74 (210)
                      -.++|+|+|.+|+|||||++.|++.......           .+.........+.-++..+.+.++||||...       
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            3689999999999999999999976543221           1222333344455578889999999999221       


Q ss_pred             -----------cccchh---------hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329           75 -----------FRTLTS---------SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        75 -----------~~~~~~---------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~  134 (210)
                                 +.....         ..=..+|+++|+++.+... +..+.-.+...+.     ..+++|-|+.|+|...
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~lt  156 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRLS-----KRVNVIPVIAKADTLT  156 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHHT-----TTSEEEEEESTGGGS-
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHhc-----ccccEEeEEecccccC
Confidence                       110000         0012479999999987532 2222111333333     3588899999999854


Q ss_pred             Ccee--cHHHHHHHHHHhCCcEEEEccC
Q 028329          135 ERVV--TKKEGINFAREYGCLFIECSAK  160 (210)
Q Consensus       135 ~~~~--~~~~~~~~~~~~~~~~~~~sa~  160 (210)
                      ..+.  ..+.+.......++.+|.....
T Consensus       157 ~~el~~~k~~i~~~l~~~~I~~f~f~~~  184 (281)
T PF00735_consen  157 PEELQAFKQRIREDLEENNIKIFDFPED  184 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--S------
T ss_pred             HHHHHHHHHHHHHHHHHcCceeeccccc
Confidence            3322  2344555556678876664443

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd01882 BMS1 Bms1

Probab=99.28  E-value=1.6e-10  Score=86.51  Aligned_cols=138  Identities=19%  Similarity=0.233  Sum_probs=81.4

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      .....|+++|.+|+|||||++.+.+..... .....+. +.   + .......+.++|+||..   ......+..+|+++
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~---i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVl  108 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-IT---V-VTGKKRRLTFIECPNDI---NAMIDIAKVADLVL  108 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EE---E-EecCCceEEEEeCCchH---HHHHHHHHhcCEEE
Confidence            345789999999999999999998642211 1112221 11   1 11235567889999854   22234467899999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcE-EEEEeCCCCCCCce-e--cHHHHHH-HHHH--hCCcEEEEccCCCC
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK-LLVGNKVDKESERV-V--TKKEGIN-FARE--YGCLFIECSAKTRV  163 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pi-ivv~nK~D~~~~~~-~--~~~~~~~-~~~~--~~~~~~~~sa~~~~  163 (210)
                      +|+|++........ . ++..+..    .+.|. ++|+||.|+..... .  ...+... +...  .+.+++.+||++.-
T Consensus       109 lviDa~~~~~~~~~-~-i~~~l~~----~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         109 LLIDASFGFEMETF-E-FLNILQV----HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             EEEecCcCCCHHHH-H-HHHHHHH----cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence            99999865433221 2 3333332    34664 45999999853321 1  1112222 2211  23579999998774

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.26  E-value=4.8e-12  Score=95.16  Aligned_cols=113  Identities=18%  Similarity=0.197  Sum_probs=58.0

Q ss_pred             EEEEEeCCCccccccchhhcc--------cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329           63 KLAIWDTAGQERFRTLTSSYY--------RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~  134 (210)
                      .+.++||||+.++...+...-        ...-++++++|.....+-......++..+.. ....+.|.|.|.||+|+..
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~-~~~~~lP~vnvlsK~Dl~~  170 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSI-MLRLELPHVNVLSKIDLLS  170 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHH-HHHHTSEEEEEE--GGGS-
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHH-HhhCCCCEEEeeeccCccc
Confidence            689999999877665544432        3456889999977544322221112222211 1124799999999999975


Q ss_pred             Cce---e----c------------HHHHHHHHH---HhC-C-cEEEEccCCCCCHHHHHHHHHHHH
Q 028329          135 ERV---V----T------------KKEGINFAR---EYG-C-LFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       135 ~~~---~----~------------~~~~~~~~~---~~~-~-~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                      ...   .    +            ......++.   ..+ + .++.+|+.+++++.+++..+-+.+
T Consensus       171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            220   0    0            000111111   112 3 699999999999999999887654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.26  E-value=4.7e-11  Score=94.26  Aligned_cols=161  Identities=19%  Similarity=0.177  Sum_probs=82.2

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCC--CCC--CceeeeEEEEEEECCeEEEEEEEeCCCccccccchh-----hc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE--LSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS-----SY   82 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~-----~~   82 (210)
                      ...++|+|+|.+|+|||||||.|.+-...+  ..+  ...+|.....+... .-..+.+||+||..-..-...     .-
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            357999999999999999999998643322  112  22333334434332 223589999999543222122     23


Q ss_pred             ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC-------CCCceecHH----HHHHHHH---
Q 028329           83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK-------ESERVVTKK----EGINFAR---  148 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~-------~~~~~~~~~----~~~~~~~---  148 (210)
                      +..-|.+|++.+.    .|....-.+...+..    .+.|+++|-+|.|.       ..++....+    +++..+.   
T Consensus       112 ~~~yD~fiii~s~----rf~~ndv~La~~i~~----~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L  183 (376)
T PF05049_consen  112 FYRYDFFIIISSE----RFTENDVQLAKEIQR----MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL  183 (376)
T ss_dssp             GGG-SEEEEEESS----S--HHHHHHHHHHHH----TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred             ccccCEEEEEeCC----CCchhhHHHHHHHHH----cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence            5567988887763    333333324445544    46889999999996       122222222    2233222   


Q ss_pred             -HhCC---cEEEEccCCC--CCHHHHHHHHHHHHHcCCC
Q 028329          149 -EYGC---LFIECSAKTR--VNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       149 -~~~~---~~~~~sa~~~--~~i~~~~~~l~~~~~~~~~  181 (210)
                       +.++   ++|-+|+.+-  .++..+.+.|.+.+...+.
T Consensus       184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr  222 (376)
T PF05049_consen  184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR  222 (376)
T ss_dssp             HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred             HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence             2243   3788888654  5688888888777655443

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.24  E-value=3.6e-11  Score=97.07  Aligned_cols=173  Identities=23%  Similarity=0.343  Sum_probs=128.1

Q ss_pred             CCCCcccccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchh
Q 028329            1 MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS   80 (210)
Q Consensus         1 ~~s~~~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~   80 (210)
                      ++|+++.-.-.-..+|+.|+|..++|||+|+++++.+.|.....+.+. .+...+.+++....+.+.|.+|...     .
T Consensus        17 vnsqewtlsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~-~~kkE~vv~gqs~lLlirdeg~~~~-----a   90 (749)
T KOG0705|consen   17 VNSQEWTLSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG-RFKKEVVVDGQSHLLLIRDEGGHPD-----A   90 (749)
T ss_pred             ccccceeeecccchhheeeeecccCCceeeeeeeccceeccccCCcCc-cceeeEEeeccceEeeeecccCCch-----h
Confidence            355666555566789999999999999999999999888654433333 4455667788888888889887322     3


Q ss_pred             hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC--CCCceecHHHHHHHHHH-hCCcEEEE
Q 028329           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK--ESERVVTKKEGINFARE-YGCLFIEC  157 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~--~~~~~~~~~~~~~~~~~-~~~~~~~~  157 (210)
                      .+...+|++|+||.+.+.++|+.+.. +...+..+.+...+|.++++++.-.  ...+.+.......++.. ..+.+|++
T Consensus        91 Qft~wvdavIfvf~~~d~~s~q~v~~-l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et  169 (749)
T KOG0705|consen   91 QFCQWVDAVVFVFSVEDEQSFQAVQA-LAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYET  169 (749)
T ss_pred             hhhhhccceEEEEEeccccCHHHHHH-HHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeec
Confidence            45567999999999999999999988 4444544555778888888876433  33445554444544444 45789999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcCC
Q 028329          158 SAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       158 sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      .+.+|.++...|..+..++...+
T Consensus       170 ~atyGlnv~rvf~~~~~k~i~~~  192 (749)
T KOG0705|consen  170 CATYGLNVERVFQEVAQKIVQLR  192 (749)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999998776553

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.23  E-value=6.5e-10  Score=82.04  Aligned_cols=159  Identities=16%  Similarity=0.085  Sum_probs=100.6

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc-------ccchhhcccC
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF-------RTLTSSYYRG   85 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~   85 (210)
                      .--||+++|.|.+|||||+..++..... ......++.......+......+++.|+||.-+-       ........+.
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~Se-aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt  139 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSE-AASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART  139 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhh-hhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence            3479999999999999999999865542 2222333444444444444556788899993221       2234456778


Q ss_pred             ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC------CCceecHHHHHHHHHHhCCcEEEEcc
Q 028329           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE------SERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~sa  159 (210)
                      +|.+++|.|++..+.-..+.+.-++.+....++.+..+.+--.|....      ..-..+...+..+.+++.+.-.++=.
T Consensus       140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~  219 (364)
T KOG1486|consen  140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF  219 (364)
T ss_pred             ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence            999999999998876666655566777776777766665554444431      11233445556666666655444444


Q ss_pred             CCCCCHHHHHHHH
Q 028329          160 KTRVNVQQCFEEL  172 (210)
Q Consensus       160 ~~~~~i~~~~~~l  172 (210)
                      ++...++++.+.+
T Consensus       220 ReD~t~DdfIDvi  232 (364)
T KOG1486|consen  220 REDCTVDDFIDVI  232 (364)
T ss_pred             ecCCChHHHHHHH
Confidence            5556666655544

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.22  E-value=8.2e-11  Score=101.95  Aligned_cols=117  Identities=20%  Similarity=0.202  Sum_probs=78.1

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC------------C---CceeeeEE----EEEEECCeEEEEEEEeCCC
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS------------P---TIGVDFKV----KYVDVGGKKLKLAIWDTAG   71 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~------------~---~~~~~~~~----~~~~~~~~~~~~~l~D~~g   71 (210)
                      .++..+|+++|+.++|||||+.+|+........            +   ..+.++..    ..+..++....+.|+||||
T Consensus        17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG   96 (731)
T PRK07560         17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG   96 (731)
T ss_pred             hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence            345568999999999999999999753211000            0   11112211    1223345578899999999


Q ss_pred             ccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329           72 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~  133 (210)
                      +..+.......++.+|++++|+|+......... ..|.....     .+.|.++++||+|+.
T Consensus        97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~~~~~-----~~~~~iv~iNK~D~~  152 (731)
T PRK07560         97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLRQALR-----ERVKPVLFINKVDRL  152 (731)
T ss_pred             ccChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHHHHHH-----cCCCeEEEEECchhh
Confidence            998888888888999999999998876433222 21333222     245779999999975

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.21  E-value=9.8e-11  Score=83.73  Aligned_cols=63  Identities=24%  Similarity=0.308  Sum_probs=42.3

Q ss_pred             EEEEEeCCCccc----cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028329           63 KLAIWDTAGQER----FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV  130 (210)
Q Consensus        63 ~~~l~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~  130 (210)
                      .+.|+|+||...    ....+..++..+|++++|.+++...+-..... +......    ....+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~-l~~~~~~----~~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEF-LKQMLDP----DKSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHH-HHHHHTT----TCSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHH-HHHHhcC----CCCeEEEEEcCC
Confidence            478999999533    23456777899999999999998655443333 4444433    333478888984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=9e-11  Score=92.66  Aligned_cols=122  Identities=19%  Similarity=0.214  Sum_probs=88.5

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhc--C-------------------CCCCCCCCceeeeEEEEEEECCeEEEEEEE
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTS--D-------------------NFEELSPTIGVDFKVKYVDVGGKKLKLAIW   67 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~--~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   67 (210)
                      +...+.-..+|+-+|.+|||||-..|+-  +                   +|.......|..+....+++++....+.|.
T Consensus         7 ~Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLL   86 (528)
T COG4108           7 QEVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLL   86 (528)
T ss_pred             HHHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEecc
Confidence            3455677889999999999999988741  1                   111111123455556666777788889999


Q ss_pred             eCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329           68 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        68 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~  136 (210)
                      ||||++.+..-....+..+|..|+|+|+...-.-...+  +.+..+    ..++||+-++||.|.+...
T Consensus        87 DTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~K--LfeVcr----lR~iPI~TFiNKlDR~~rd  149 (528)
T COG4108          87 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLK--LFEVCR----LRDIPIFTFINKLDREGRD  149 (528)
T ss_pred             CCCCccccchhHHHHHHhhheeeEEEecccCccHHHHH--HHHHHh----hcCCceEEEeeccccccCC
Confidence            99999999998888899999999999998754322222  344443    4689999999999975443

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.20  E-value=5.3e-10  Score=87.32  Aligned_cols=127  Identities=20%  Similarity=0.173  Sum_probs=86.4

Q ss_pred             EEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcc----------cHHHHHHHHHHHHhhhccCCCC
Q 028329           52 VKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD----------TFTNLSDVWAKEIDLYSTNQDC  121 (210)
Q Consensus        52 ~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~  121 (210)
                      ...+.+......+.++|.+|+..-+..|..++.+++++++|+++++.+          ...+... +...+-......+.
T Consensus       185 I~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~-LF~sI~n~~~F~~t  263 (354)
T KOG0082|consen  185 IVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLK-LFESICNNKWFANT  263 (354)
T ss_pred             eeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHH-HHHHHhcCcccccC
Confidence            344444445577899999999999999999999999999999998643          2333444 33333333445689


Q ss_pred             cEEEEEeCCCCCCCc--------------e-ecHHHHHHHHHH--------h--CCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329          122 IKLLVGNKVDKESER--------------V-VTKKEGINFARE--------Y--GCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       122 piivv~nK~D~~~~~--------------~-~~~~~~~~~~~~--------~--~~~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                      ++|++.||.|+-.+.              . -..+++..+...        .  .+-+..+.|.+..+|+.+|+.+.+.+
T Consensus       264 siiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~I  343 (354)
T KOG0082|consen  264 SIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTI  343 (354)
T ss_pred             cEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHH
Confidence            999999999982211              1 122333333321        1  22356678899999999999999888


Q ss_pred             HcC
Q 028329          177 LDT  179 (210)
Q Consensus       177 ~~~  179 (210)
                      .+.
T Consensus       344 i~~  346 (354)
T KOG0082|consen  344 IQN  346 (354)
T ss_pred             HHH
Confidence            654

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.19  E-value=1.9e-10  Score=89.73  Aligned_cols=103  Identities=17%  Similarity=0.101  Sum_probs=63.4

Q ss_pred             EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH
Q 028329           61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK  140 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~  140 (210)
                      .+.+.|+||+|.....   ...+..+|.++++.+..   +...+.. +...+      .++|.++++||+|+........
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~-~~~~l------~~~~~ivv~NK~Dl~~~~~~~~  192 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQG-IKAGL------MEIADIYVVNKADGEGATNVTI  192 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHH-HHHHH------hhhccEEEEEcccccchhHHHH
Confidence            4678999999854222   23456688888885543   3333333 22212      2467799999999864432110


Q ss_pred             --HH----HHHHHH---HhCCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329          141 --KE----GINFAR---EYGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       141 --~~----~~~~~~---~~~~~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                        ..    ...+..   .+..+++.+||+++.|++++++++.+..
T Consensus       193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence              00    011111   1234689999999999999999998864

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=2.2e-10  Score=95.53  Aligned_cols=162  Identities=19%  Similarity=0.144  Sum_probs=102.5

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-----CCceeeeEEEE--------EEEC----CeEEEEEEEeCCCccc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-----PTIGVDFKVKY--------VDVG----GKKLKLAIWDTAGQER   74 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-----~~~~~~~~~~~--------~~~~----~~~~~~~l~D~~g~~~   74 (210)
                      -+..-|+|+|+..+|||-|+..+.+.......     ..+|.|+....        +.-+    ..-..+.++||||++.
T Consensus       473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs  552 (1064)
T KOG1144|consen  473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES  552 (1064)
T ss_pred             cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence            35577899999999999999998864432111     12233332211        0000    1112477889999999


Q ss_pred             cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee----------------
Q 028329           75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV----------------  138 (210)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----------------  138 (210)
                      |..+.......||.+|+|+|+.+.-.-..+..  +.+++    ..+.|+||+.||+|..-.+..                
T Consensus       553 FtnlRsrgsslC~~aIlvvdImhGlepqtiES--i~lLR----~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~  626 (1064)
T KOG1144|consen  553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTIES--INLLR----MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD  626 (1064)
T ss_pred             hhhhhhccccccceEEEEeehhccCCcchhHH--HHHHH----hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence            99999999999999999999986522222221  22233    357999999999997311100                


Q ss_pred             -cHH------H-HHHHHH-Hh-------------CCcEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329          139 -TKK------E-GINFAR-EY-------------GCLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       139 -~~~------~-~~~~~~-~~-------------~~~~~~~sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                       ..+      . +.+|+. .+             -+.++++||..|+||.+++-+|++.....
T Consensus       627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~  689 (1064)
T KOG1144|consen  627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT  689 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence             000      0 011110 00             13479999999999999999999876543

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.16  E-value=4.3e-10  Score=93.83  Aligned_cols=122  Identities=16%  Similarity=0.195  Sum_probs=71.5

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeE-EEEEEECCeEEEEEEEeCCCccccc-------cc--
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFK-VKYVDVGGKKLKLAIWDTAGQERFR-------TL--   78 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~-------~~--   78 (210)
                      +.+..++|+++|.+|+||||++|+|++........ ..+++.. ......++  ..+.++||||.....       ..  
T Consensus       114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk  191 (763)
T TIGR00993       114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILS  191 (763)
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHH
Confidence            33566899999999999999999999876443332 2222221 22223333  568899999954321       11  


Q ss_pred             -hhhccc--CccEEEEEEeCCCcccHHHHHHHHHHHHh-hhccCCCCcEEEEEeCCCCCC
Q 028329           79 -TSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEID-LYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        79 -~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~piivv~nK~D~~~  134 (210)
                       ...++.  .+|++++|..++.......-.. ++..+. .+....-..+|||.|+.|...
T Consensus       192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~-aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLP-LLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHHHhcCCCCEEEEEEeCCCccccHHHHH-HHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence             111223  4799999998764333211111 222222 112223356789999999754

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.15  E-value=5.5e-10  Score=79.59  Aligned_cols=149  Identities=18%  Similarity=0.094  Sum_probs=88.2

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeE-------------EEEEEE----------------------
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFK-------------VKYVDV----------------------   57 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~-------------~~~~~~----------------------   57 (210)
                      .++|.+.|++|||||+|+.+++..-..++.. -...+.+             ...+.+                      
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~   92 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL   92 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence            5899999999999999998876432111110 0000000             000000                      


Q ss_pred             CCeEEEEEEEeCCCccccccchhhcccCcc-EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329           58 GGKKLKLAIWDTAGQERFRTLTSSYYRGAQ-GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        58 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~  136 (210)
                      ......+.|++..|+ --.+.   .+.-.| .-|+|+|.+..+-...--         +..-. ..-++|+||.|+...-
T Consensus        93 ~~~~~Dll~iEs~GN-L~~~~---sp~L~d~~~v~VidvteGe~~P~K~---------gP~i~-~aDllVInK~DLa~~v  158 (202)
T COG0378          93 DFPDLDLLFIESVGN-LVCPF---SPDLGDHLRVVVIDVTEGEDIPRKG---------GPGIF-KADLLVINKTDLAPYV  158 (202)
T ss_pred             cCCcCCEEEEecCcc-eeccc---CcchhhceEEEEEECCCCCCCcccC---------CCcee-EeeEEEEehHHhHHHh
Confidence            111135666676662 11111   122244 788999988765321110         00001 1348999999998776


Q ss_pred             eecHHHHHHHHHHh--CCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329          137 VVTKKEGINFAREY--GCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       137 ~~~~~~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                      ..+.+....-++..  ..+++++|+++|.|++++++|+....
T Consensus       159 ~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         159 GADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             CccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            66666666666655  46899999999999999999987654

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=4.4e-10  Score=95.65  Aligned_cols=118  Identities=16%  Similarity=0.188  Sum_probs=87.6

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCC-----------------CCCCCCceeeeEEEEEEECCe-EEEEEEEeCCCc
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF-----------------EELSPTIGVDFKVKYVDVGGK-KLKLAIWDTAGQ   72 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~   72 (210)
                      .+...+|.++|+..+|||||..+|+...-                 .+.....|.|+.......... ...++++|||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            56778999999999999999999863321                 111113355665555555445 589999999999


Q ss_pred             cccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329           73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~  134 (210)
                      -.|.......++-+|++++|+|+...-....-.- |....     +.++|.++++||+|...
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv-~rqa~-----~~~vp~i~fiNKmDR~~  142 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETV-WRQAD-----KYGVPRILFVNKMDRLG  142 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHH-HHHHh-----hcCCCeEEEEECccccc
Confidence            9999999999999999999999987644332222 54443     35799999999999743

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.12  E-value=7.8e-11  Score=87.84  Aligned_cols=149  Identities=16%  Similarity=0.188  Sum_probs=85.3

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCC-----------CCCCC----------------CceeeeEEEEEEECC------
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNF-----------EELSP----------------TIGVDFKVKYVDVGG------   59 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~-----------~~~~~----------------~~~~~~~~~~~~~~~------   59 (210)
                      ..+.|.|.|+||+|||||+..|...-.           .+.+|                ......+...+.-.+      
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            568999999999999999998842100           00001                011223344433222      


Q ss_pred             ------------eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEE
Q 028329           60 ------------KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG  127 (210)
Q Consensus        60 ------------~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~  127 (210)
                                  ..+.+.|++|.|..+-..   ....-+|.+++|.-..-.+..+.++. -+..+         .-++|+
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~Ka-GimEi---------aDi~vV  174 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKA-GIMEI---------ADIFVV  174 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-T-THHHH----------SEEEE
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhh-hhhhh---------ccEEEE
Confidence                        235678888877443332   23445899999999887777666655 22222         238999


Q ss_pred             eCCCCCCCceecHHHHHHHHHH-------hCCcEEEEccCCCCCHHHHHHHHHHH
Q 028329          128 NKVDKESERVVTKKEGINFARE-------YGCLFIECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       128 nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~sa~~~~~i~~~~~~l~~~  175 (210)
                      ||.|.+..... ..+.......       +..+++.+||.++.|++++++.|.+.
T Consensus       175 NKaD~~gA~~~-~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~  228 (266)
T PF03308_consen  175 NKADRPGADRT-VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH  228 (266)
T ss_dssp             E--SHHHHHHH-HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             eCCChHHHHHH-HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            99996433222 1222222221       23579999999999999999998774

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>smart00053 DYNc Dynamin, GTPase

Probab=99.11  E-value=1.5e-09  Score=81.53  Aligned_cols=69  Identities=22%  Similarity=0.215  Sum_probs=43.2

Q ss_pred             EEEEEEeCCCccc-------------cccchhhccc-CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEE
Q 028329           62 LKLAIWDTAGQER-------------FRTLTSSYYR-GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG  127 (210)
Q Consensus        62 ~~~~l~D~~g~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~  127 (210)
                      ..+.++|+||...             ...+...+++ ..+++++|+|++..-.-..... +...+.    ....++++|+
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~-ia~~ld----~~~~rti~Vi  199 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK-LAKEVD----PQGERTIGVI  199 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH-HHHHHH----HcCCcEEEEE
Confidence            4689999999632             1123444566 4469999999876433222222 333333    3568899999


Q ss_pred             eCCCCCCC
Q 028329          128 NKVDKESE  135 (210)
Q Consensus       128 nK~D~~~~  135 (210)
                      ||.|...+
T Consensus       200 TK~D~~~~  207 (240)
T smart00053      200 TKLDLMDE  207 (240)
T ss_pred             ECCCCCCc
Confidence            99998643

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.11  E-value=4.5e-10  Score=82.37  Aligned_cols=176  Identities=17%  Similarity=0.176  Sum_probs=111.5

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc---chhhcccCccEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT---LTSSYYRGAQGII   90 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~d~~i   90 (210)
                      ..+|+++|...+||||+-+.......+........|.....-++.+.-+.+.+||+||+..+-.   -....++++.+++
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi  106 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI  106 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence            3679999999999999988887666554433333333333334455567899999999765432   2344678999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc-eecH-HHHH----HHHHHh---CC--cEEEEcc
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER-VVTK-KEGI----NFAREY---GC--LFIECSA  159 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~-~~~~----~~~~~~---~~--~~~~~sa  159 (210)
                      +|+|+.+. -.+.+.......-+.+.-++++.+=|.++|.|...+. .+.. ..+.    ......   ++  .++-+|.
T Consensus       107 fvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI  185 (347)
T KOG3887|consen  107 FVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI  185 (347)
T ss_pred             EEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence            99999864 3344444233334555667889999999999974322 1111 1111    111222   22  3454444


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCcccccccCcc
Q 028329          160 KTRVNVQQCFEELVLKILDTPSLLAEGSKGLK  191 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~  191 (210)
                       ...+|-+.|..+.+.+...-+.++.....+.
T Consensus       186 -yDHSIfEAFSkvVQkLipqLptLEnlLnif~  216 (347)
T KOG3887|consen  186 -YDHSIFEAFSKVVQKLIPQLPTLENLLNIFI  216 (347)
T ss_pred             -cchHHHHHHHHHHHHHhhhchhHHHHHHHHh
Confidence             4566888899999988877766655444333

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.10  E-value=1.7e-10  Score=83.91  Aligned_cols=168  Identities=22%  Similarity=0.341  Sum_probs=95.7

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEEC-CeEEEEEEEeCCCccccc-----cchhhcccCc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFR-----TLTSSYYRGA   86 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~-----~~~~~~~~~~   86 (210)
                      ..-||+++|.+|+|||++-..+..+..+......|.++...-.++. -....+.+||.+|++.+-     ......+.++
T Consensus         3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            3568999999999999987666655433333333433333322221 124678999999987432     2344568899


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCC--ceecHHH----HHHHHHHhCCcEEEEcc
Q 028329           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESE--RVVTKKE----GINFAREYGCLFIECSA  159 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~--~~~~~~~----~~~~~~~~~~~~~~~sa  159 (210)
                      +++++|||++..+-...+.. +..-++.. ...++.-+....+|+|+...  +....+.    .+.+....++.++.+|.
T Consensus        83 ~vli~vFDves~e~~~D~~~-yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi  161 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHY-YQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI  161 (295)
T ss_pred             eeeeeeeeccchhhhhhHHH-HHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence            99999999998764444433 44433222 22455667788899999533  2222222    22222223445666665


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCc
Q 028329          160 KTRVNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~~~~  182 (210)
                      -+. .+-..+..+...+..+.+.
T Consensus       162 wDe-tl~KAWS~iv~~lipn~~~  183 (295)
T KOG3886|consen  162 WDE-TLYKAWSSIVYNLIPNVSA  183 (295)
T ss_pred             hhH-HHHHHHHHHHHhhCCChHH
Confidence            432 2223344444444444433

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=3.3e-09  Score=82.94  Aligned_cols=84  Identities=26%  Similarity=0.247  Sum_probs=57.4

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCC-CCCCC--CceeeeEEEEEEE----------C----CeEEEEEEEeCCCc----
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSP--TIGVDFKVKYVDV----------G----GKKLKLAIWDTAGQ----   72 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~-~~~~~--~~~~~~~~~~~~~----------~----~~~~~~~l~D~~g~----   72 (210)
                      .+++.++|.||||||||.|.++...- ..+||  |.........+..          .    .....+.++|.+|.    
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            47899999999999999999998773 24566  3333333222211          1    12357899999882    


Q ss_pred             ---cccccchhhcccCccEEEEEEeCCC
Q 028329           73 ---ERFRTLTSSYYRGAQGIIMVYDVTR   97 (210)
Q Consensus        73 ---~~~~~~~~~~~~~~d~~i~v~d~~~   97 (210)
                         +.+......-++.+|+++.|+|+..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence               3333345556789999999999873

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.08  E-value=1.9e-09  Score=81.66  Aligned_cols=151  Identities=15%  Similarity=0.192  Sum_probs=91.7

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCC-----------CCCCCC-Cc---------------eeeeEEEEEEE--------
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDN-----------FEELSP-TI---------------GVDFKVKYVDV--------   57 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~-----------~~~~~~-~~---------------~~~~~~~~~~~--------   57 (210)
                      +...|.|.|.||+|||||+..|...-           ..+.+| +-               ....+...+..        
T Consensus        50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS  129 (323)
T COG1703          50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS  129 (323)
T ss_pred             CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence            45799999999999999998874210           001111 11               11122222221        


Q ss_pred             ----------CCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEE
Q 028329           58 ----------GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG  127 (210)
Q Consensus        58 ----------~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~  127 (210)
                                +...+.+.|++|.|..+-..   ....-+|.+++|.-..-.+..+.++. -...+.         -++|+
T Consensus       130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~-GimEia---------Di~vI  196 (323)
T COG1703         130 RATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKA-GIMEIA---------DIIVI  196 (323)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHh-hhhhhh---------heeeE
Confidence                      22335688889988544332   23345899999998887777666655 223332         37999


Q ss_pred             eCCCCCCCceecH--HHHHHHH------HHhCCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329          128 NKVDKESERVVTK--KEGINFA------REYGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       128 nK~D~~~~~~~~~--~~~~~~~------~~~~~~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                      ||.|.........  ..+....      ..+.-+++.+||.++.|++++++.+.+..
T Consensus       197 NKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~  253 (323)
T COG1703         197 NKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR  253 (323)
T ss_pred             eccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence            9999643221111  1111111      12345699999999999999999998765

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=4.4e-09  Score=83.47  Aligned_cols=156  Identities=16%  Similarity=0.122  Sum_probs=108.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCC--CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELS--PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      -|...|+-.-|||||+..+++.......  ...|++....-+........+.|+|.||++.+-......+...|..++|+
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV   81 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV   81 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence            4677899999999999999977643222  24555555555555555568999999999998888888888999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH---hCCcEEEEccCCCCCHHHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE---YGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      |+++.-..+...  .+..++.   ..-...++|+||+|+.+...+ .+...++...   ...+++.+|+++|.||+++.+
T Consensus        82 ~~deGl~~qtgE--hL~iLdl---lgi~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~  155 (447)
T COG3276          82 AADEGLMAQTGE--HLLILDL---LGIKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKN  155 (447)
T ss_pred             eCccCcchhhHH--HHHHHHh---cCCCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence            997543322222  1222222   122345899999998755422 1222333332   245689999999999999999


Q ss_pred             HHHHHHH
Q 028329          171 ELVLKIL  177 (210)
Q Consensus       171 ~l~~~~~  177 (210)
                      .|.+..-
T Consensus       156 ~l~~L~~  162 (447)
T COG3276         156 ELIDLLE  162 (447)
T ss_pred             HHHHhhh
Confidence            9998873

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.05  E-value=4.3e-09  Score=85.15  Aligned_cols=116  Identities=15%  Similarity=0.151  Sum_probs=80.8

Q ss_pred             eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCc----------ccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028329           60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK  129 (210)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~piivv~nK  129 (210)
                      ....+.++|++|+...+..|..++.+++++|||+++++.          ..+......|...+.. ....+.|++|+.||
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~-~~~~~~~iil~lnK  312 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN-PWFKNTPIILFLNK  312 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS-GGGTTSEEEEEEE-
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC-cccccCceEEeeec
Confidence            445788999999999999999999999999999998753          2355555644444443 44458999999999


Q ss_pred             CCCC------CC-----------c-eecHHHHHHHHHHh------------CCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329          130 VDKE------SE-----------R-VVTKKEGINFAREY------------GCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       130 ~D~~------~~-----------~-~~~~~~~~~~~~~~------------~~~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                      .|+-      ..           . .-+.+.+..+....            .+.+..++|.+..++..+|+.+.+.+
T Consensus       313 ~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  313 IDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            9971      00           0 02334445444331            12356788998899999999887653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.04  E-value=2.3e-09  Score=83.21  Aligned_cols=130  Identities=18%  Similarity=0.274  Sum_probs=86.2

Q ss_pred             CCCcccccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC--CCceeeeEEEEEEECCeEE-----------------
Q 028329            2 DSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS--PTIGVDFKVKYVDVGGKKL-----------------   62 (210)
Q Consensus         2 ~s~~~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----------------   62 (210)
                      +|+.-.....+....|+++|.-+.||||||+.|+.++++...  +.+.+++....+..+....                 
T Consensus        46 ~sp~l~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL  125 (532)
T KOG1954|consen   46 HSPALEDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGL  125 (532)
T ss_pred             ccccccCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhh
Confidence            566666677788899999999999999999999999986433  3555555555554322111                 


Q ss_pred             ----------------------EEEEEeCCCcc-----------ccccchhhcccCccEEEEEEeCCCcccHHHHHHHHH
Q 028329           63 ----------------------KLAIWDTAGQE-----------RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWA  109 (210)
Q Consensus        63 ----------------------~~~l~D~~g~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~  109 (210)
                                            .+.++|+||.-           .+.....-++..+|.++++||+..-+--.+... .+
T Consensus       126 ~~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~-vi  204 (532)
T KOG1954|consen  126 NKFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKR-VI  204 (532)
T ss_pred             hhhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHH-HH
Confidence                                  58999999932           122234446778999999999775443223322 22


Q ss_pred             HHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329          110 KEIDLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus       110 ~~~~~~~~~~~~piivv~nK~D~~~~~  136 (210)
                      ..++    ..+--+-||.||.|..+..
T Consensus       205 ~aLk----G~EdkiRVVLNKADqVdtq  227 (532)
T KOG1954|consen  205 DALK----GHEDKIRVVLNKADQVDTQ  227 (532)
T ss_pred             HHhh----CCcceeEEEeccccccCHH
Confidence            3332    2233457999999986443

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=2.3e-09  Score=88.73  Aligned_cols=117  Identities=23%  Similarity=0.302  Sum_probs=85.4

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC----------------CceeeeEEEEEE-----ECCeEEEEEEEe
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP----------------TIGVDFKVKYVD-----VGGKKLKLAIWD   68 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~----------------~~~~~~~~~~~~-----~~~~~~~~~l~D   68 (210)
                      ......+|.++|+-+.|||+|+..|.....+..+.                ..+..+.....+     ..+..+-+++.|
T Consensus       124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD  203 (971)
T KOG0468|consen  124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD  203 (971)
T ss_pred             CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence            34567899999999999999999998665543322                112222222222     256678899999


Q ss_pred             CCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028329           69 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK  132 (210)
Q Consensus        69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~  132 (210)
                      |||+..+....-..++.+|++++|+|+.+.-.+..-+-     ++. .-....|+++|+||.|.
T Consensus       204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~-----ikh-aiq~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERI-----IKH-AIQNRLPIVVVINKVDR  261 (971)
T ss_pred             CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHH-----HHH-HHhccCcEEEEEehhHH
Confidence            99999999999999999999999999988766543322     222 22346899999999996

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.01  E-value=1.6e-09  Score=82.91  Aligned_cols=56  Identities=25%  Similarity=0.143  Sum_probs=40.9

Q ss_pred             CCcEEEEEeCCCCCCCceecHHHHHHHHHHh--CCcEEEEccCCCCCHHHHHHHHHHH
Q 028329          120 DCIKLLVGNKVDKESERVVTKKEGINFAREY--GCLFIECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       120 ~~piivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~  175 (210)
                      ..+-++|+||+|+......+.+......+..  ..+++.+|++++.|++++++||...
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            3566899999999653333333444444443  4679999999999999999999774

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.00  E-value=4.2e-10  Score=85.83  Aligned_cols=153  Identities=16%  Similarity=0.136  Sum_probs=93.6

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC--CceeeeEEEEEEECCeEEEEEEEeCCCcc---------ccccch
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQE---------RFRTLT   79 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~   79 (210)
                      ....-|.++|..|+|||||++.|+.-... ...-  |...|.....+. ++  -.+.+.||.|.-         .|++..
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp-sg--~~vlltDTvGFisdLP~~LvaAF~ATL  252 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP-SG--NFVLLTDTVGFISDLPIQLVAAFQATL  252 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC-CC--cEEEEeechhhhhhCcHHHHHHHHHHH
Confidence            34567899999999999999999944322 2211  333333333222 22  235566999842         222222


Q ss_pred             hhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCc----EEEEEeCCCCCCCceecHHHHHHHHHHhCCcEE
Q 028329           80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI----KLLVGNKVDKESERVVTKKEGINFAREYGCLFI  155 (210)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p----iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  155 (210)
                      . ....+|.++.|.|+++|+...+... .+..+... .-++.|    ++=|=||.|.........        ..+  .+
T Consensus       253 e-eVaeadlllHvvDiShP~ae~q~e~-Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~~~e~E--------~n~--~v  319 (410)
T KOG0410|consen  253 E-EVAEADLLLHVVDISHPNAEEQRET-VLHVLNQI-GVPSEPKLQNMIEVDNKIDYEEDEVEEE--------KNL--DV  319 (410)
T ss_pred             H-HHhhcceEEEEeecCCccHHHHHHH-HHHHHHhc-CCCcHHHHhHHHhhccccccccccCccc--------cCC--cc
Confidence            2 2456999999999999987666555 55555432 112222    344558888643322111        112  47


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHcCC
Q 028329          156 ECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       156 ~~sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      .+|+++|.|++++.+.+-..+....
T Consensus       320 ~isaltgdgl~el~~a~~~kv~~~t  344 (410)
T KOG0410|consen  320 GISALTGDGLEELLKAEETKVASET  344 (410)
T ss_pred             ccccccCccHHHHHHHHHHHhhhhh
Confidence            8999999999999999888775443

>cd01855 YqeH YqeH

Probab=98.99  E-value=3.5e-09  Score=77.33  Aligned_cols=99  Identities=19%  Similarity=0.098  Sum_probs=67.6

Q ss_pred             cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HH
Q 028329           75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----RE  149 (210)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~  149 (210)
                      +...+..+++.+|++++|+|+++....      |...+..  ...+.|+++|+||+|+..... ..+....+.     ..
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~--~~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~   94 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRL--FGGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAG   94 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHH--hcCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhh
Confidence            567788889999999999999876421      2222211  124689999999999864332 222233332     22


Q ss_pred             hCC---cEEEEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028329          150 YGC---LFIECSAKTRVNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       150 ~~~---~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~  182 (210)
                      .+.   .++.+||+++.|++++++++.+.+......
T Consensus        95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~~~~~~  130 (190)
T cd01855          95 LGLKPKDVILISAKKGWGVEELINAIKKLAKKGGDV  130 (190)
T ss_pred             cCCCcccEEEEECCCCCCHHHHHHHHHHHhhcCCcE
Confidence            333   589999999999999999999887544333

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.99  E-value=1.2e-09  Score=75.94  Aligned_cols=54  Identities=22%  Similarity=0.303  Sum_probs=43.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ   72 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (210)
                      +++++|.+|+|||||+|+|++.........++.+.....+.++.   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            89999999999999999999887765555666666666666654   4799999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=1.7e-08  Score=78.98  Aligned_cols=156  Identities=19%  Similarity=0.212  Sum_probs=93.0

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCC--------CC--CceeeeEEEEEEECCeEEEEEEEeCCCcccc--------
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEEL--------SP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQERF--------   75 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------   75 (210)
                      .|.+.++|++|.|||||+|.|+...+...        .+  +.........+.-+|..+.++++||||....        
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~  100 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR  100 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence            49999999999999999999987754322        11  2233333444444778889999999992211        


Q ss_pred             ----------cc-------chhhccc--CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329           76 ----------RT-------LTSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        76 ----------~~-------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~  136 (210)
                                +.       ..+..+.  .+|+++|.+..+.. .+..+.-.+...+     ...+++|-|+.|+|.....
T Consensus       101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l-----~~~vNiIPVI~KaD~lT~~  174 (366)
T KOG2655|consen  101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKL-----SKKVNLIPVIAKADTLTKD  174 (366)
T ss_pred             hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHH-----hccccccceeeccccCCHH
Confidence                      10       1111122  57999999997753 1222211122222     2357788888899985443


Q ss_pred             ee--cHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329          137 VV--TKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       137 ~~--~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      ..  ....+......+++++|....-..   ++-+....+.+..
T Consensus       175 El~~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l~~  215 (366)
T KOG2655|consen  175 ELNQFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDLKS  215 (366)
T ss_pred             HHHHHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHHhh
Confidence            32  334455666667788776665544   3334444444433

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.98  E-value=1.5e-09  Score=77.78  Aligned_cols=56  Identities=27%  Similarity=0.347  Sum_probs=46.4

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG   71 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (210)
                      ..++++++|.||+|||||+|+|.+.......+.+++|.....+..+.   .+.++|+||
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence            35899999999999999999999888767777788887766666543   478999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01900 YchF YchF subfamily

Probab=98.96  E-value=1.3e-09  Score=83.36  Aligned_cols=79  Identities=23%  Similarity=0.170  Sum_probs=50.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeE--EEEEEECCe---------------EEEEEEEeCCCccccc---
Q 028329           17 LLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFK--VKYVDVGGK---------------KLKLAIWDTAGQERFR---   76 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~---------------~~~~~l~D~~g~~~~~---   76 (210)
                      |+++|.||||||||+|+|++... .....+++|..  .-.+.+.+.               ...+.++|+||...-.   
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~   79 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG   79 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence            57899999999999999998765 22222222222  222222222               2358999999943211   


Q ss_pred             ----cchhhcccCccEEEEEEeCC
Q 028329           77 ----TLTSSYYRGAQGIIMVYDVT   96 (210)
Q Consensus        77 ----~~~~~~~~~~d~~i~v~d~~   96 (210)
                          ......++.+|++++|+|+.
T Consensus        80 ~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          80 EGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             hHHHHHHHHHHHhCCEEEEEEeCc
Confidence                12233467899999999974

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>cd01858 NGP_1 NGP-1

Probab=98.96  E-value=2.5e-09  Score=75.65  Aligned_cols=56  Identities=23%  Similarity=0.357  Sum_probs=44.0

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG   71 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (210)
                      ..++|+++|.||+|||||+|+|.+.......+.++.|.....+..+.   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            35789999999999999999999887766667777776655555432   267889998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.95  E-value=2e-08  Score=78.15  Aligned_cols=138  Identities=18%  Similarity=0.274  Sum_probs=84.5

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-----------CCCceeeeEEEEEEECCeEEEEEEEeCCCccccc---cc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-----------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR---TL   78 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---~~   78 (210)
                      -.++|+++|++|+|||||+|.|++......           .++.....+...+.-++....++++||||....-   ..
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            469999999999999999999997643221           1122333344444557788899999999932111   01


Q ss_pred             hhh-----------c------------c--cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329           79 TSS-----------Y------------Y--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        79 ~~~-----------~------------~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~  133 (210)
                      |..           +            +  ..+|+++|.+..+.. .+..+.-.....+     ...+.+|-|+.|+|.-
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~l-----s~~vNlIPVI~KaD~l  175 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRL-----SKRVNLIPVIAKADTL  175 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHH-----hcccCeeeeeeccccC
Confidence            110           1            1  247999999997743 2222221122222     2347788889999985


Q ss_pred             CCc--eecHHHHHHHHHHhCCcEEE
Q 028329          134 SER--VVTKKEGINFAREYGCLFIE  156 (210)
Q Consensus       134 ~~~--~~~~~~~~~~~~~~~~~~~~  156 (210)
                      ...  ..-.+.+......+.+++|.
T Consensus       176 T~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         176 TDDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCceeC
Confidence            333  23344556666677888775

>cd01859 MJ1464 MJ1464

Probab=98.94  E-value=2.9e-09  Score=75.25  Aligned_cols=95  Identities=15%  Similarity=0.088  Sum_probs=64.8

Q ss_pred             ccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEE
Q 028329           76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFI  155 (210)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  155 (210)
                      +.++...++++|++++|+|++++...... . +...+.    ..+.|+++|+||+|+......  .....+....+.+++
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~-l~~~~~----~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~   74 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRSR-K-LERYVL----ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVV   74 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCCH-H-HHHHHH----hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEE
Confidence            44566777889999999999876543221 1 222222    235899999999998533211  111123334567899


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHc
Q 028329          156 ECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       156 ~~sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      .+||+++.|++++++.+.+.+..
T Consensus        75 ~iSa~~~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          75 YVSAKERLGTKILRRTIKELAKI   97 (156)
T ss_pred             EEEccccccHHHHHHHHHHHHhh
Confidence            99999999999999999887753

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.94  E-value=6.4e-09  Score=81.09  Aligned_cols=88  Identities=19%  Similarity=0.178  Sum_probs=66.0

Q ss_pred             hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccC
Q 028329           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK  160 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  160 (210)
                      ..+.++|.+++|+|+.++.........|+..+..    .++|+++|+||+|+..... ..+.........+.+++.+||+
T Consensus        76 ~iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~  150 (298)
T PRK00098         76 LIAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAK  150 (298)
T ss_pred             ceeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCC
Confidence            3468999999999999887766665556665543    4689999999999953322 2223344455678899999999


Q ss_pred             CCCCHHHHHHHHH
Q 028329          161 TRVNVQQCFEELV  173 (210)
Q Consensus       161 ~~~~i~~~~~~l~  173 (210)
                      ++.|++++++.+.
T Consensus       151 ~g~gi~~L~~~l~  163 (298)
T PRK00098        151 EGEGLDELKPLLA  163 (298)
T ss_pred             CCccHHHHHhhcc
Confidence            9999999988764

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.94  E-value=2.1e-08  Score=73.66  Aligned_cols=152  Identities=18%  Similarity=0.206  Sum_probs=90.3

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCC--------C-CCC-CceeeeEEEEEEECCeEEEEEEEeCCCcc---------
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFE--------E-LSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQE---------   73 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~--------~-~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------   73 (210)
                      -.|+|.++|.+|.|||||+|.|...+..        . ..+ +.........+.-++...+++++||||..         
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW  124 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW  124 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence            3599999999999999999999754321        1 111 33333333344557778899999999922         


Q ss_pred             ---------ccccchhh--------cc--cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC-
Q 028329           74 ---------RFRTLTSS--------YY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE-  133 (210)
Q Consensus        74 ---------~~~~~~~~--------~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~-  133 (210)
                               .|....+.        .+  ..+++++|.+..+.. ++-.+.-.++..+-.     -+.++-|+-|.|-. 
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~-----vvNvvPVIakaDtlT  198 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE-----VVNVVPVIAKADTLT  198 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh-----hheeeeeEeeccccc
Confidence                     11111111        11  247899999988753 222222213333322     25667777899963 


Q ss_pred             -CCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329          134 -SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus       134 -~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                       +++..-.+.++.....+++.+++-.+.+...-+..++
T Consensus       199 leEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN  236 (336)
T KOG1547|consen  199 LEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLN  236 (336)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHH
Confidence             3444455566677777888887766655443333333

>PRK12289 GTPase RsgA; Reviewed

Probab=98.88  E-value=1.4e-08  Score=80.46  Aligned_cols=92  Identities=16%  Similarity=0.122  Sum_probs=64.6

Q ss_pred             chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEE
Q 028329           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIEC  157 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (210)
                      +....+.++|.+++|+|+.++.........|+....    ..++|+++|+||+|+......  +........++++++.+
T Consensus        82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~i  155 (352)
T PRK12289         82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFI  155 (352)
T ss_pred             eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEE
Confidence            344458899999999999987633322232554442    356899999999999643221  22233345678899999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 028329          158 SAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       158 sa~~~~~i~~~~~~l~~~  175 (210)
                      ||+++.|++++++.+...
T Consensus       156 SA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        156 SVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EcCCCCCHHHHhhhhccc
Confidence            999999999999888653

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.85  E-value=2.1e-08  Score=77.79  Aligned_cols=89  Identities=15%  Similarity=0.067  Sum_probs=66.3

Q ss_pred             hhhcccCccEEEEEEeCCCcc-cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEE
Q 028329           79 TSSYYRGAQGIIMVYDVTRRD-TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIEC  157 (210)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (210)
                      .+..+.++|.+++|+|+.++. ++..+.. |+..+..    .++|+++|+||+|+.....  ......+....+.+++.+
T Consensus        72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr-~L~~~~~----~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~v  144 (287)
T cd01854          72 EQVIAANVDQLVIVVSLNEPFFNPRLLDR-YLVAAEA----AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAV  144 (287)
T ss_pred             ceeEEEeCCEEEEEEEcCCCCCCHHHHHH-HHHHHHH----cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEE
Confidence            345588999999999999987 7776666 6665543    4688999999999964421  112233344568899999


Q ss_pred             ccCCCCCHHHHHHHHHH
Q 028329          158 SAKTRVNVQQCFEELVL  174 (210)
Q Consensus       158 sa~~~~~i~~~~~~l~~  174 (210)
                      |++++.|+++++..+..
T Consensus       145 SA~~g~gi~~L~~~L~~  161 (287)
T cd01854         145 SAKTGEGLDELREYLKG  161 (287)
T ss_pred             ECCCCccHHHHHhhhcc
Confidence            99999999998887653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=5.1e-08  Score=73.76  Aligned_cols=161  Identities=18%  Similarity=0.172  Sum_probs=101.4

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcC----------CC--CCCCC---CceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSD----------NF--EELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERF   75 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~----------~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (210)
                      ....++|..+|+.+-|||||...++..          .|  ....|   ..+.++....+.++...-.+-..|+||+..|
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY   88 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence            345699999999999999998877521          11  11111   4455665555555555556677799999888


Q ss_pred             ccchhhcccCccEEEEEEeCCCcc---cHHHHHHHHHHHHhhhccCCCC-cEEEEEeCCCCCCCcee---cHHHHHHHHH
Q 028329           76 RTLTSSYYRGAQGIIMVYDVTRRD---TFTNLSDVWAKEIDLYSTNQDC-IKLLVGNKVDKESERVV---TKKEGINFAR  148 (210)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~-piivv~nK~D~~~~~~~---~~~~~~~~~~  148 (210)
                      -.....-..+.|+.|+|+++.+..   +-+.+.     +.++    -.+ .++++.||+|+.+....   -..+++.+..
T Consensus        89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL-----larq----vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs  159 (394)
T COG0050          89 VKNMITGAAQMDGAILVVAATDGPMPQTREHIL-----LARQ----VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLS  159 (394)
T ss_pred             HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh-----hhhh----cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHH
Confidence            877767777889999999999853   333331     1121    234 45677799999764332   3345667777


Q ss_pred             HhCCc-----EEEEccCCC-C-------CHHHHHHHHHHHHHcCC
Q 028329          149 EYGCL-----FIECSAKTR-V-------NVQQCFEELVLKILDTP  180 (210)
Q Consensus       149 ~~~~~-----~~~~sa~~~-~-------~i~~~~~~l~~~~~~~~  180 (210)
                      .++++     ++.-|+..- +       .|.++++.+-..+....
T Consensus       160 ~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Pe  204 (394)
T COG0050         160 EYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPE  204 (394)
T ss_pred             HcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCC
Confidence            77654     666665422 2       24555555555444333

>cd01856 YlqF YlqF

Probab=98.82  E-value=1.2e-08  Score=73.24  Aligned_cols=57  Identities=19%  Similarity=0.378  Sum_probs=44.9

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ   72 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (210)
                      ..++++++|.+|+|||||+++|.+..+....+.++++.....+.++   ..+.+|||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            4579999999999999999999988776555566666666655554   34789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.82  E-value=1.8e-08  Score=78.28  Aligned_cols=59  Identities=24%  Similarity=0.396  Sum_probs=47.8

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE   73 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (210)
                      ...++++++|.||||||||+|+|.+.......+.++.|.....+..+.   .+.++||||..
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence            356899999999999999999999887766677778777766666543   47899999963

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.81  E-value=1.4e-08  Score=78.34  Aligned_cols=58  Identities=21%  Similarity=0.404  Sum_probs=46.8

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ   72 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (210)
                      ...++++++|.||+|||||+|+|.+.........+++|.....+.++.   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence            346899999999999999999999887666666777777666666543   4789999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=8.6e-08  Score=79.86  Aligned_cols=145  Identities=14%  Similarity=0.169  Sum_probs=86.7

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeE----------------------------------------
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFK----------------------------------------   51 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~----------------------------------------   51 (210)
                      ....||+|.|..++||||++|+++..+.-.....+.+...                                        
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            4578999999999999999999975443221111111111                                        


Q ss_pred             ----EEEEEECCe-----EEEEEEEeCCCc---cccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCC
Q 028329           52 ----VKYVDVGGK-----KLKLAIWDTAGQ---ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ  119 (210)
Q Consensus        52 ----~~~~~~~~~-----~~~~~l~D~~g~---~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  119 (210)
                          ...+..+..     .-.+.++|.||-   ....+-...+...+|++|+|..+.+..+..+..  ++....    ..
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~--Ff~~vs----~~  260 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQ--FFHKVS----EE  260 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHH--HHHHhh----cc
Confidence                111111111     114678899983   333344455677899999999987654433332  333322    22


Q ss_pred             CCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC--------cEEEEccCCC
Q 028329          120 DCIKLLVGNKVDKESERVVTKKEGINFAREYGC--------LFIECSAKTR  162 (210)
Q Consensus       120 ~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~sa~~~  162 (210)
                      +..|.|+.||.|.........+++....+.+.+        .++++|++.-
T Consensus       261 KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e~  311 (749)
T KOG0448|consen  261 KPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKEV  311 (749)
T ss_pred             CCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccch
Confidence            566778888999876666666666655544432        2788987643

>PRK12288 GTPase RsgA; Reviewed

Probab=98.80  E-value=5.5e-08  Score=77.13  Aligned_cols=89  Identities=16%  Similarity=0.156  Sum_probs=66.7

Q ss_pred             cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHHhCCcEEEEccC
Q 028329           82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VTKKEGINFAREYGCLFIECSAK  160 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~sa~  160 (210)
                      ...++|.+++|++++...++..+.. |+....    ..++|.+||+||+|+..... .............+.+++.+||+
T Consensus       117 iaANvD~vlIV~s~~p~~s~~~Ldr-~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~  191 (347)
T PRK12288        117 IAANIDQIVIVSAVLPELSLNIIDR-YLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSH  191 (347)
T ss_pred             EEEEccEEEEEEeCCCCCCHHHHHH-HHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            4577999999999988888887776 665443    34688999999999964321 11223334445678899999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 028329          161 TRVNVQQCFEELVLK  175 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~  175 (210)
                      ++.|++++++++...
T Consensus       192 tg~GideL~~~L~~k  206 (347)
T PRK12288        192 TGEGLEELEAALTGR  206 (347)
T ss_pred             CCcCHHHHHHHHhhC
Confidence            999999999988653

>cd01859 MJ1464 MJ1464

Probab=98.80  E-value=1.9e-08  Score=71.05  Aligned_cols=56  Identities=27%  Similarity=0.337  Sum_probs=42.5

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG   71 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (210)
                      ...+++++|.+++|||||+++|.+.......++.+.+.....+..++   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            45789999999999999999999776555556667665444333333   588999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.79  E-value=1.3e-08  Score=80.06  Aligned_cols=58  Identities=19%  Similarity=0.320  Sum_probs=50.7

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE   73 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (210)
                      ..++++++|.||||||||||+|.+.......+.+|.|.....+.++..   +.++||||--
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii  188 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII  188 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence            348899999999999999999999888778888899999888887665   8899999943

>cd01855 YqeH YqeH

Probab=98.72  E-value=2.6e-08  Score=72.75  Aligned_cols=55  Identities=24%  Similarity=0.398  Sum_probs=42.3

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCC--------CCCCCCceeeeEEEEEEECCeEEEEEEEeCCC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNF--------EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG   71 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (210)
                      ..+++++|.+|+|||||+|+|.+...        ......+++|.....+.++.   .+.++||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            36899999999999999999997542        22334667777777776654   478999998

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.71  E-value=1.7e-07  Score=69.78  Aligned_cols=107  Identities=18%  Similarity=0.109  Sum_probs=75.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc-------cccchhhcccCcc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER-------FRTLTSSYYRGAQ   87 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~d   87 (210)
                      -+|.++|.|.+||||++..|.+.. .+....-+++...+.........++.+.|+||.-+       -........+.|+
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcn  138 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCN  138 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeeccc
Confidence            489999999999999999999644 34433344444444444445566788889999321       1224455678899


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCc
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI  122 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p  122 (210)
                      .+++|.|+..+-+-..+.+.-++-+....++.+..
T Consensus       139 li~~vld~~kp~~hk~~ie~eleg~girlnk~pp~  173 (358)
T KOG1487|consen  139 LIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPN  173 (358)
T ss_pred             EEEEEeeccCcccHHHHHHHhhhcceeeccCCCCC
Confidence            99999999999988888776666666655554433

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.68  E-value=2e-08  Score=73.53  Aligned_cols=124  Identities=17%  Similarity=0.150  Sum_probs=87.1

Q ss_pred             EEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCC----------cccHHHHHHHHHHHHhhhccCCCCcEE
Q 028329           55 VDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLSDVWAKEIDLYSTNQDCIKL  124 (210)
Q Consensus        55 ~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~pii  124 (210)
                      +.++-....+.+.|.+|+..-+..|..++.++-.+++++.++.          .+..++... +...+-.+....+-++|
T Consensus       192 ypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkA-LFrTIi~yPWF~nssVI  270 (359)
T KOG0085|consen  192 YPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSVI  270 (359)
T ss_pred             cCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHH-HHHHHhccccccCCceE
Confidence            3444556678899999999999999999999988888776653          344566666 45555556777889999


Q ss_pred             EEEeCCCCCCCc----------------eecHHHHHHHHHHh----C-----C-cEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329          125 LVGNKVDKESER----------------VVTKKEGINFAREY----G-----C-LFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       125 vv~nK~D~~~~~----------------~~~~~~~~~~~~~~----~-----~-~~~~~sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      +..||.|+.++.                ..+.+.++.+..+.    +     + .-..+.|.+..||.-+|..+.+.+++
T Consensus       271 lFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq  350 (359)
T KOG0085|consen  271 LFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  350 (359)
T ss_pred             EEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHH
Confidence            999999984332                22333444444332    2     1 13446688889999999999888765


Q ss_pred             C
Q 028329          179 T  179 (210)
Q Consensus       179 ~  179 (210)
                      .
T Consensus       351 ~  351 (359)
T KOG0085|consen  351 L  351 (359)
T ss_pred             h
Confidence            4

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.67  E-value=1.4e-07  Score=75.55  Aligned_cols=95  Identities=23%  Similarity=0.228  Sum_probs=67.2

Q ss_pred             ccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHH----HHH
Q 028329           72 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGI----NFA  147 (210)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~----~~~  147 (210)
                      .+.+..+...+...++++++|+|+.+....      |...+....  .+.|+++|+||+|+.... ...+...    .++
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s------~~~~l~~~~--~~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~  120 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGS------LIPELKRFV--GGNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRA  120 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCCC------ccHHHHHHh--CCCCEEEEEEchhhCCCC-CCHHHHHHHHHHHH
Confidence            456667777778899999999999775421      334444332  257899999999985432 2233333    335


Q ss_pred             HHhCC---cEEEEccCCCCCHHHHHHHHHHH
Q 028329          148 REYGC---LFIECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       148 ~~~~~---~~~~~sa~~~~~i~~~~~~l~~~  175 (210)
                      ...++   .++.+||+++.|++++++.+.+.
T Consensus       121 k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       121 KELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            55666   48999999999999999998765

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.67  E-value=5.8e-08  Score=68.51  Aligned_cols=57  Identities=23%  Similarity=0.262  Sum_probs=42.0

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG   71 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (210)
                      ....+++++|.+|+|||||+|+|.+.........+++|.....+..+   ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCC
Confidence            35688999999999999999999987654444445555555545443   3478889998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.60  E-value=8.5e-08  Score=72.01  Aligned_cols=159  Identities=16%  Similarity=0.032  Sum_probs=92.1

Q ss_pred             cccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCC--CCCceeeeEEEEEEECCeEEEEEEEeCCCc----------cc
Q 028329            7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL--SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ----------ER   74 (210)
Q Consensus         7 ~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~   74 (210)
                      ...+.+...+++++|.+|+|||+|++.+...+....  .+.++.+.....+.   ....+.+.|.||-          ..
T Consensus       129 ~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~---v~~~~~~vDlPG~~~a~y~~~~~~d  205 (320)
T KOG2486|consen  129 EDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH---VGKSWYEVDLPGYGRAGYGFELPAD  205 (320)
T ss_pred             ccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee---ccceEEEEecCCcccccCCccCcch
Confidence            334457789999999999999999999986654321  22445444444333   3345777899991          11


Q ss_pred             cccchhhcccC---ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce------e-----cH
Q 028329           75 FRTLTSSYYRG---AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV------V-----TK  140 (210)
Q Consensus        75 ~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~------~-----~~  140 (210)
                      +......++.+   -=-+++++|++.+-  .......++++.+    .++|+.+|.||+|....-.      .     ..
T Consensus       206 ~~~~t~~Y~leR~nLv~~FLLvd~sv~i--~~~D~~~i~~~ge----~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f  279 (320)
T KOG2486|consen  206 WDKFTKSYLLERENLVRVFLLVDASVPI--QPTDNPEIAWLGE----NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINF  279 (320)
T ss_pred             HhHhHHHHHHhhhhhheeeeeeeccCCC--CCCChHHHHHHhh----cCCCeEEeeehhhhhhhccccccCccccceeeh
Confidence            11222222221   23455666766442  2222224444544    5799999999999732211      1     11


Q ss_pred             HHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHH
Q 028329          141 KEGINFAREYGCLFIECSAKTRVNVQQCFEELVL  174 (210)
Q Consensus       141 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~  174 (210)
                      +...........+++.+|+.++.|++.+.-.+.+
T Consensus       280 ~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  280 QGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             hhccccceeccCCceeeecccccCceeeeeehhh
Confidence            1111222223456788999999999887655443

>TIGR00092 GTP-binding protein YchF

Probab=98.59  E-value=2.3e-07  Score=73.57  Aligned_cols=81  Identities=22%  Similarity=0.114  Sum_probs=54.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCC-C-CCCC--CceeeeEEEEEEECC---------------eEEEEEEEeCCCccc-
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNF-E-ELSP--TIGVDFKVKYVDVGG---------------KKLKLAIWDTAGQER-   74 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~-~-~~~~--~~~~~~~~~~~~~~~---------------~~~~~~l~D~~g~~~-   74 (210)
                      +++.++|.|++|||||++.|++... . ..+|  |........  .+..               ....+.+.|+||... 
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v--~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g   80 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVV--NPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG   80 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEE--EechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence            7899999999999999999998765 2 3334  222222222  2222               124678889999432 


Q ss_pred             ------cccchhhcccCccEEEEEEeCCC
Q 028329           75 ------FRTLTSSYYRGAQGIIMVYDVTR   97 (210)
Q Consensus        75 ------~~~~~~~~~~~~d~~i~v~d~~~   97 (210)
                            ........++.+|+++.|+++.+
T Consensus        81 As~g~Glgn~fL~~ir~~d~l~hVvr~f~  109 (368)
T TIGR00092        81 ASKGEGLGNQFLANIREVDIIQHVVRCFE  109 (368)
T ss_pred             hhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence                  22244456789999999999853

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.56  E-value=1.6e-06  Score=64.88  Aligned_cols=91  Identities=18%  Similarity=0.084  Sum_probs=57.1

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcC--CCCCCCC----CceeeeEEEEEEECCeEEEEEEEeCCCcccccc------ch
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSD--NFEELSP----TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT------LT   79 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~   79 (210)
                      ....-|.|+|++++|||+|+|.|.+.  .+.....    |.|.......... +....+.++||+|......      ..
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~   83 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDAR   83 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhH
Confidence            45678999999999999999999988  5532222    3333332222211 2356799999999543322      12


Q ss_pred             hhcccC--ccEEEEEEeCCCcccHHH
Q 028329           80 SSYYRG--AQGIIMVYDVTRRDTFTN  103 (210)
Q Consensus        80 ~~~~~~--~d~~i~v~d~~~~~s~~~  103 (210)
                      ...+..  ++.+||..+.........
T Consensus        84 ~~~l~~llss~~i~n~~~~~~~~~~~  109 (224)
T cd01851          84 LFALATLLSSVLIYNSWETILGDDLA  109 (224)
T ss_pred             HHHHHHHHhCEEEEeccCcccHHHHH
Confidence            233333  789998888775544333

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.56  E-value=1.8e-06  Score=68.84  Aligned_cols=156  Identities=15%  Similarity=0.208  Sum_probs=92.5

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcC-----------------CCCCCCC-----Cceeee---EEEEEEE-CCeEEEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSD-----------------NFEELSP-----TIGVDF---KVKYVDV-GGKKLKLAI   66 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~-----------------~~~~~~~-----~~~~~~---~~~~~~~-~~~~~~~~l   66 (210)
                      .-+=|.++|+..+||||||+||...                 ..++...     |+..-+   ....+.+ ++..+++++
T Consensus        16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL   95 (492)
T PF09547_consen   16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL   95 (492)
T ss_pred             CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence            3467899999999999999998421                 1222111     111001   1233344 567899999


Q ss_pred             EeCCCc-------------ccccc-chhh---------------ccc--CccEEEEEEeCC----CcccHHHHHHHHHHH
Q 028329           67 WDTAGQ-------------ERFRT-LTSS---------------YYR--GAQGIIMVYDVT----RRDTFTNLSDVWAKE  111 (210)
Q Consensus        67 ~D~~g~-------------~~~~~-~~~~---------------~~~--~~d~~i~v~d~~----~~~s~~~~~~~~~~~  111 (210)
                      +|+.|-             ..+-. -|..               .++  ..=++++.-|-+    .++.+....+.....
T Consensus        96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E  175 (492)
T PF09547_consen   96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE  175 (492)
T ss_pred             EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence            999871             00000 0100               011  112666666644    245666666656666


Q ss_pred             HhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccC--CCCCHHHHHHHHHH
Q 028329          112 IDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK--TRVNVQQCFEELVL  174 (210)
Q Consensus       112 ~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~--~~~~i~~~~~~l~~  174 (210)
                      ++.    .++|++|+.|-.+..  .....+.+.++..+++++++.+++.  +..+|..++..++-
T Consensus       176 Lk~----igKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLy  234 (492)
T PF09547_consen  176 LKE----IGKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLY  234 (492)
T ss_pred             HHH----hCCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHh
Confidence            654    679999999998853  3345556677788899998888774  34455555555443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd01858 NGP_1 NGP-1

Probab=98.55  E-value=5.3e-07  Score=63.76  Aligned_cols=91  Identities=13%  Similarity=0.031  Sum_probs=57.6

Q ss_pred             hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccC
Q 028329           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK  160 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  160 (210)
                      ..+..+|++++|+|++++.... ... +...+..  ...++|+++|+||+|+...... ......+........+.+||+
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~-~~~-i~~~l~~--~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~   78 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTR-CKH-VEEYLKK--EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASIN   78 (157)
T ss_pred             HhhhhCCEEEEEEECCCCcccc-CHH-HHHHHHh--ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecc
Confidence            3467899999999999874321 111 3333332  1345899999999999533221 111122222222335789999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028329          161 TRVNVQQCFEELVLKI  176 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~  176 (210)
                      .+.|++++++.+...+
T Consensus        79 ~~~~~~~L~~~l~~~~   94 (157)
T cd01858          79 NPFGKGSLIQLLRQFS   94 (157)
T ss_pred             ccccHHHHHHHHHHHH
Confidence            9999999999987764

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=8.3e-08  Score=73.03  Aligned_cols=167  Identities=16%  Similarity=0.161  Sum_probs=105.4

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC------CceeeeEEEEEE-E---------------------------
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP------TIGVDFKVKYVD-V---------------------------   57 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~------~~~~~~~~~~~~-~---------------------------   57 (210)
                      .-.++|.-+|+..-||||+++.+.+-.......      +....+....++ .                           
T Consensus        36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~  115 (466)
T KOG0466|consen   36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP  115 (466)
T ss_pred             eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence            356999999999999999999886532110000      110001000000 0                           


Q ss_pred             --CC---eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCc----ccHHHHHHHHHHHHhhhccCCCCcEEEEEe
Q 028329           58 --GG---KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----DTFTNLSDVWAKEIDLYSTNQDCIKLLVGN  128 (210)
Q Consensus        58 --~~---~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~~piivv~n  128 (210)
                        .+   ---.+.|.|.||++-..+....-..-.|++++++..+..    ++-+.+..     ++.+   .-..++++-|
T Consensus       116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa-----veiM---~LkhiiilQN  187 (466)
T KOG0466|consen  116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA-----VEIM---KLKHIIILQN  187 (466)
T ss_pred             CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH-----HHHh---hhceEEEEec
Confidence              00   012467889999887766655555556888988887753    34444432     2221   1245789999


Q ss_pred             CCCCCCCce--ecHHHHHHHHHH---hCCcEEEEccCCCCCHHHHHHHHHHHHHcCCCccccc
Q 028329          129 KVDKESERV--VTKKEGINFARE---YGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEG  186 (210)
Q Consensus       129 K~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~  186 (210)
                      |.|+..+..  ...+++..|...   .+.+++++||.-.+|++-+.+++...+......+...
T Consensus       188 KiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~s~  250 (466)
T KOG0466|consen  188 KIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFTSP  250 (466)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccCCC
Confidence            999965443  345556666654   3678999999999999999999998886665555443

>PRK12289 GTPase RsgA; Reviewed

Probab=98.54  E-value=1.6e-07  Score=74.60  Aligned_cols=57  Identities=26%  Similarity=0.299  Sum_probs=39.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCce-------eeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIG-------VDFKVKYVDVGGKKLKLAIWDTAGQERF   75 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (210)
                      .++|+|.+|||||||||+|.+..........+       +|.....+.+.+..   .++||||...+
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~  237 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP  237 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence            37999999999999999999765444333333       45555555554332   57899997543

>PRK12288 GTPase RsgA; Reviewed

Probab=98.54  E-value=1.7e-07  Score=74.31  Aligned_cols=58  Identities=21%  Similarity=0.277  Sum_probs=38.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCC-------ceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPT-------IGVDFKVKYVDVGGKKLKLAIWDTAGQERFR   76 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (210)
                      .++|+|.+|||||||+|+|.+.........       ..+|.....+.+.+..   .++||||...+.
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            378999999999999999997654332221       1244455555554332   478999976544

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.54  E-value=6.4e-07  Score=63.20  Aligned_cols=84  Identities=15%  Similarity=0.066  Sum_probs=55.0

Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  166 (210)
                      |++++|+|+.++.+....   ++..  ......++|+++|+||+|+....... +....+....+..++.+||+++.|++
T Consensus         1 Dvvl~VvD~~~p~~~~~~---~i~~--~~~~~~~~p~IiVlNK~Dl~~~~~~~-~~~~~~~~~~~~~ii~vSa~~~~gi~   74 (155)
T cd01849           1 DVILEVLDARDPLGTRSP---DIER--VLIKEKGKKLILVLNKADLVPKEVLR-KWLAYLRHSYPTIPFKISATNGQGIE   74 (155)
T ss_pred             CEEEEEEeccCCccccCH---HHHH--HHHhcCCCCEEEEEechhcCCHHHHH-HHHHHHHhhCCceEEEEeccCCcChh
Confidence            789999999987655433   2221  11223568999999999985332111 11112222234568999999999999


Q ss_pred             HHHHHHHHHH
Q 028329          167 QCFEELVLKI  176 (210)
Q Consensus       167 ~~~~~l~~~~  176 (210)
                      ++++.+.+..
T Consensus        75 ~L~~~i~~~~   84 (155)
T cd01849          75 KKESAFTKQT   84 (155)
T ss_pred             hHHHHHHHHh
Confidence            9999987654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.52  E-value=3.5e-07  Score=70.57  Aligned_cols=85  Identities=22%  Similarity=0.215  Sum_probs=56.6

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEE---------------CCeEEEEEEEeCCCcc---
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDV---------------GGKKLKLAIWDTAGQE---   73 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~D~~g~~---   73 (210)
                      ..+++.++|.|+||||||.|.|+.... +..+|..+.+-....+.+               .-....++++|++|.-   
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            568999999999999999999997765 344552222222222222               1234678999998832   


Q ss_pred             ----ccccchhhcccCccEEEEEEeCCC
Q 028329           74 ----RFRTLTSSYYRGAQGIIMVYDVTR   97 (210)
Q Consensus        74 ----~~~~~~~~~~~~~d~~i~v~d~~~   97 (210)
                          .........++.+|+++-|+++..
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEecC
Confidence                222233445778999999998764

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.49  E-value=8.6e-06  Score=56.65  Aligned_cols=148  Identities=18%  Similarity=0.251  Sum_probs=79.9

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCC-Ccc-----------------
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTA-GQE-----------------   73 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~-g~~-----------------   73 (210)
                      ...+||++.|+|||||||++.++...--...+.-.|  +....+.-++...-|.+.|+. |..                 
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG--f~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG--FITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeee--EEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            346899999999999999998886322111122222  444445566777777777776 310                 


Q ss_pred             ----ccc----cchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH
Q 028329           74 ----RFR----TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN  145 (210)
Q Consensus        74 ----~~~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~  145 (210)
                          .+.    +.....+..+|++  ++|---+..+..- . +...+.. ....+.|++.+.++.+.. +       ..+
T Consensus        81 V~v~~le~i~~~al~rA~~~aDvI--IIDEIGpMElks~-~-f~~~ve~-vl~~~kpliatlHrrsr~-P-------~v~  147 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADVI--IIDEIGPMELKSK-K-FREAVEE-VLKSGKPLIATLHRRSRH-P-------LVQ  147 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCEE--EEecccchhhccH-H-HHHHHHH-HhcCCCcEEEEEecccCC-h-------HHH
Confidence                011    1112223345654  4565444332222 1 5555554 334567888888877641 1       122


Q ss_pred             HHHHhCCcEEEEccCCCCCHHHHHHHHHHHHH
Q 028329          146 FAREYGCLFIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       146 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~  177 (210)
                      .....+.-++.   .+.+|-+.++..++..+-
T Consensus       148 ~ik~~~~v~v~---lt~~NR~~i~~~Il~~L~  176 (179)
T COG1618         148 RIKKLGGVYVF---LTPENRNRILNEILSVLK  176 (179)
T ss_pred             HhhhcCCEEEE---EccchhhHHHHHHHHHhc
Confidence            23333433333   445555577777777653

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=2.2e-06  Score=67.23  Aligned_cols=151  Identities=20%  Similarity=0.205  Sum_probs=92.9

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC------------------------CceeeeEEEEEEE----------
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP------------------------TIGVDFKVKYVDV----------   57 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~------------------------~~~~~~~~~~~~~----------   57 (210)
                      --.+|+.++|.-.+|||||+-.|+.+......-                        ..+++..-..+.+          
T Consensus       165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~  244 (591)
T KOG1143|consen  165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV  244 (591)
T ss_pred             ceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence            356899999999999999998887553221110                        1111111111111          


Q ss_pred             CCeEEEEEEEeCCCccccccchhhccc--CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329           58 GGKKLKLAIWDTAGQERFRTLTSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        58 ~~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~  135 (210)
                      +....-++|+|++|+..|.......+.  ..|..++|++++..-..-.-.  .+-.+.    ..++|++|+++|+|+...
T Consensus       245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrE--HLgl~~----AL~iPfFvlvtK~Dl~~~  318 (591)
T KOG1143|consen  245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTRE--HLGLIA----ALNIPFFVLVTKMDLVDR  318 (591)
T ss_pred             hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHH--HHHHHH----HhCCCeEEEEEeeccccc
Confidence            111235789999999999876665554  358899999988654322111  222222    247999999999998543


Q ss_pred             ------------------------ceecHHHHHHHHHHh----CCcEEEEccCCCCCHHHH
Q 028329          136 ------------------------RVVTKKEGINFAREY----GCLFIECSAKTRVNVQQC  168 (210)
Q Consensus       136 ------------------------~~~~~~~~~~~~~~~----~~~~~~~sa~~~~~i~~~  168 (210)
                                              ..-...++...++..    -+|+|-+|+..|+|++-+
T Consensus       319 ~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll  379 (591)
T KOG1143|consen  319 QGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL  379 (591)
T ss_pred             hhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence                                    122233444444433    246899999999997653

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.47  E-value=2.1e-06  Score=70.59  Aligned_cols=134  Identities=14%  Similarity=0.112  Sum_probs=79.4

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ..++-++++|+||+||||||++|.......... ..| -+    ..+.+..-.+++.++|.+  ... ......-+|.++
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G-Pi----TvvsgK~RRiTflEcp~D--l~~-miDvaKIaDLVl  138 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG-PI----TVVSGKTRRITFLECPSD--LHQ-MIDVAKIADLVL  138 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC-ce----EEeecceeEEEEEeChHH--HHH-HHhHHHhhheeE
Confidence            356888999999999999999887543221111 111 01    123567778999999842  222 233455689999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCceecHHHHH------HHHHH-hCCcEEEEccC
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVVTKKEGI------NFARE-YGCLFIECSAK  160 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~------~~~~~-~~~~~~~~sa~  160 (210)
                      +++|.+-.-..+...  ++..+...    ..| ++-|+++.|+-....- ...+.      .|..- .|+.+|.+|..
T Consensus       139 LlIdgnfGfEMETmE--FLnil~~H----GmPrvlgV~ThlDlfk~~st-Lr~~KKrlkhRfWtEiyqGaKlFylsgV  209 (1077)
T COG5192         139 LLIDGNFGFEMETME--FLNILISH----GMPRVLGVVTHLDLFKNPST-LRSIKKRLKHRFWTEIYQGAKLFYLSGV  209 (1077)
T ss_pred             EEeccccCceehHHH--HHHHHhhc----CCCceEEEEeecccccChHH-HHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence            999998765554443  44444332    333 4567799998433211 11111      11111 27788888864

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.45  E-value=2.1e-06  Score=61.30  Aligned_cols=135  Identities=19%  Similarity=0.270  Sum_probs=66.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeC-CCc----------------------
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDT-AGQ----------------------   72 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~-~g~----------------------   72 (210)
                      +|++.|++|+|||||++++...--....+..|  +....+.-++...-+.+.|. .|.                      
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~   78 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDL   78 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-H
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccCCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcH
Confidence            68999999999999999987432111112222  33333444555666666666 221                      


Q ss_pred             cccccchhhcc----cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC-CCCCCceecHHHHHHHH
Q 028329           73 ERFRTLTSSYY----RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV-DKESERVVTKKEGINFA  147 (210)
Q Consensus        73 ~~~~~~~~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~-D~~~~~~~~~~~~~~~~  147 (210)
                      +.+.......+    ..+|  ++++|---+-.+... . |.+.+....+ .++|++.++.+. +.+        ....+.
T Consensus        79 e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~~~-~-F~~~v~~~l~-s~~~vi~vv~~~~~~~--------~l~~i~  145 (168)
T PF03266_consen   79 ESFEEIGLPALRNALSSSD--LIVIDEIGKMELKSP-G-FREAVEKLLD-SNKPVIGVVHKRSDNP--------FLEEIK  145 (168)
T ss_dssp             HHHHCCCCCCCHHHHHCCH--EEEE---STTCCC-C-H-HHHHHHHHHC-TTSEEEEE--SS--SC--------CHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCC--EEEEeccchhhhcCH-H-HHHHHHHHHc-CCCcEEEEEecCCCcH--------HHHHHH
Confidence            01111111112    2345  788884333211111 1 4455544333 678888877776 432        234455


Q ss_pred             HHhCCcEEEEccCCCCCH
Q 028329          148 REYGCLFIECSAKTRVNV  165 (210)
Q Consensus       148 ~~~~~~~~~~sa~~~~~i  165 (210)
                      ...++.+++++..+...+
T Consensus       146 ~~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  146 RRPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTTTSEEEE--TTTCCCH
T ss_pred             hCCCcEEEEeChhHHhhH
Confidence            566788999887776654

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.44  E-value=4.3e-07  Score=68.87  Aligned_cols=57  Identities=28%  Similarity=0.327  Sum_probs=38.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-------CceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-------TIGVDFKVKYVDVGGKKLKLAIWDTAGQERF   75 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (210)
                      -.++++|.+|||||||+|+|.+........       ...+|.....+.+.+    ..++||||...+
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~  184 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEF  184 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCcccc
Confidence            367899999999999999999764332221       122445555555533    268899996543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.44  E-value=1.4e-06  Score=67.37  Aligned_cols=92  Identities=17%  Similarity=0.097  Sum_probs=62.7

Q ss_pred             chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEE
Q 028329           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIEC  157 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (210)
                      .....+..+|++++|+|+.++.+.....  +...+      .+.|+++|+||+|+......  ..........+.+++.+
T Consensus        14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~~--i~~~l------~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~i   83 (276)
T TIGR03596        14 EIKEKLKLVDVVIEVLDARIPLSSRNPM--IDEIR------GNKPRLIVLNKADLADPAVT--KQWLKYFEEKGIKALAI   83 (276)
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCCCChh--HHHHH------CCCCEEEEEEccccCCHHHH--HHHHHHHHHcCCeEEEE
Confidence            4556688999999999998775533321  22222      25789999999998533211  11122233346678999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcC
Q 028329          158 SAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       158 sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      |++++.|++++.+.+.+.+.+.
T Consensus        84 Sa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        84 NAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             ECCCcccHHHHHHHHHHHHHHh
Confidence            9999999999999988877543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.41  E-value=4e-07  Score=64.00  Aligned_cols=59  Identities=24%  Similarity=0.263  Sum_probs=34.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCC------C-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEE------L-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR   76 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (210)
                      -.++++|++|||||||+|+|.+.....      . .....+|.....+.+...   ..++||||...+.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~  101 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG  101 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence            568899999999999999999764221      1 112233444444555333   3667999965443

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.41  E-value=4.2e-06  Score=68.68  Aligned_cols=96  Identities=13%  Similarity=0.160  Sum_probs=61.6

Q ss_pred             EEEEEeCCCc-------------cccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028329           63 KLAIWDTAGQ-------------ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK  129 (210)
Q Consensus        63 ~~~l~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK  129 (210)
                      ...+.|+||.             +....+..++..+.+++|+|+--..-+..-...   -.++. .....+.-.|+|.+|
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnV---TDLVs-q~DP~GrRTIfVLTK  488 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIV---TDLVS-QMDPHGRRTIFVLTK  488 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhH---HHHHH-hcCCCCCeeEEEEee
Confidence            5788899992             122234566788999999998755443322221   12222 244556677999999


Q ss_pred             CCCCCCceecHHHHHHHHHHhCCc-----EEEEccCCC
Q 028329          130 VDKESERVVTKKEGINFAREYGCL-----FIECSAKTR  162 (210)
Q Consensus       130 ~D~~~~~~~~~~~~~~~~~~~~~~-----~~~~sa~~~  162 (210)
                      .|+.++...+...++.+....-+|     ||.+-.-.|
T Consensus       489 VDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrG  526 (980)
T KOG0447|consen  489 VDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKG  526 (980)
T ss_pred             cchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCC
Confidence            999988888888888877654333     565544333

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.41  E-value=2.8e-07  Score=73.01  Aligned_cols=148  Identities=16%  Similarity=0.182  Sum_probs=103.6

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCC-----------------CCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDN-----------------FEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ   72 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (210)
                      +....-+|.++.+-.+||||.-.|++.-.                 |.......|.++....+.++....++.++||||+
T Consensus        33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpgh  112 (753)
T KOG0464|consen   33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGH  112 (753)
T ss_pred             chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCc
Confidence            33456789999999999999998875211                 1111113466777788888889999999999999


Q ss_pred             cccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC
Q 028329           73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC  152 (210)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~  152 (210)
                      ..++-....+++--|+++.|||++..-.-..+.- |.+     ..+.++|...+.||+|.....-.  ..+..+-.++++
T Consensus       113 vdf~leverclrvldgavav~dasagve~qtltv-wrq-----adk~~ip~~~finkmdk~~anfe--~avdsi~ekl~a  184 (753)
T KOG0464|consen  113 VDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTV-WRQ-----ADKFKIPAHCFINKMDKLAANFE--NAVDSIEEKLGA  184 (753)
T ss_pred             ceEEEEHHHHHHHhcCeEEEEeccCCcccceeee-ehh-----ccccCCchhhhhhhhhhhhhhhh--hHHHHHHHHhCC
Confidence            9999888899998999999999997765555544 644     34567899999999997433211  123344455666


Q ss_pred             c--EEEEccCCCCCH
Q 028329          153 L--FIECSAKTRVNV  165 (210)
Q Consensus       153 ~--~~~~sa~~~~~i  165 (210)
                      .  ...+..-...+.
T Consensus       185 k~l~l~lpi~eak~f  199 (753)
T KOG0464|consen  185 KALKLQLPIGEAKGF  199 (753)
T ss_pred             ceEEEEecccccccc
Confidence            5  333444444444

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.39  E-value=1.4e-06  Score=73.69  Aligned_cols=115  Identities=25%  Similarity=0.371  Sum_probs=84.0

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCC------------C---CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDN------------F---EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE   73 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (210)
                      .+.+..-+++++.+..=|||||+..|....            |   .+...+.|.|...-.+..-...+.+.++|+||+.
T Consensus         4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv   83 (887)
T KOG0467|consen    4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV   83 (887)
T ss_pred             CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence            345566789999999999999999886332            2   2222366666666666665577899999999999


Q ss_pred             ccccchhhcccCccEEEEEEeCCCcc---cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028329           74 RFRTLTSSYYRGAQGIIMVYDVTRRD---TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK  132 (210)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~  132 (210)
                      .|.+......+-+|++++++|+...-   +..-+++.|.+         ..-.++|.||+|.
T Consensus        84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~---------~~~~~lvinkidr  136 (887)
T KOG0467|consen   84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE---------GLKPILVINKIDR  136 (887)
T ss_pred             chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc---------cCceEEEEehhhh
Confidence            99999999899999999999988653   33333332322         2334899999994

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.39  E-value=5.4e-07  Score=73.03  Aligned_cols=56  Identities=20%  Similarity=0.257  Sum_probs=49.8

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ   72 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (210)
                      .+.|.++|.|||||||+||.|.+.+-..++.|+|.|-+..++.+..   .+.|.|+||.
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVCLCDCPGL  369 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence            6999999999999999999999999888888999998888887655   4788999993

>PRK13796 GTPase YqeH; Provisional

Probab=98.39  E-value=5.4e-07  Score=72.27  Aligned_cols=56  Identities=20%  Similarity=0.244  Sum_probs=41.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCC-----CCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDN-----FEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE   73 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (210)
                      .++.++|.+|||||||+|+|....     .......+|+|.....+.+++.   ..++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence            479999999999999999998543     1123446777787777776543   3688999963

>cd01856 YlqF YlqF

Probab=98.38  E-value=1.2e-06  Score=62.85  Aligned_cols=91  Identities=15%  Similarity=0.077  Sum_probs=60.9

Q ss_pred             cchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEE
Q 028329           77 TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIE  156 (210)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  156 (210)
                      ......+.++|++++|+|++++...... . +...+      .+.|+++|+||+|+......  .....+....+..++.
T Consensus        11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~-i~~~~------~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~   80 (171)
T cd01856          11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-L-LEKIL------GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLF   80 (171)
T ss_pred             HHHHHHHhhCCEEEEEeeccCccCcCCh-h-hHhHh------cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEE
Confidence            3455668899999999999876543221 1 22221      24688999999998533211  1112223334556899


Q ss_pred             EccCCCCCHHHHHHHHHHHHH
Q 028329          157 CSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       157 ~sa~~~~~i~~~~~~l~~~~~  177 (210)
                      +|++++.|++++.+.+...+.
T Consensus        81 iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          81 VNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             EECCCcccHHHHHHHHHHHHH
Confidence            999999999999999888763

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.38  E-value=4.5e-06  Score=64.65  Aligned_cols=144  Identities=18%  Similarity=0.108  Sum_probs=90.4

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcC----------CC-----CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSD----------NF-----EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR   76 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (210)
                      ...++|.-+|+..=|||||-..++.-          +|     .......|.++....+.++...-.+-=.|+||+..|-
T Consensus        52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI  131 (449)
T KOG0460|consen   52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI  131 (449)
T ss_pred             CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence            34589999999999999998776421          11     1111144556655555555554455556999998887


Q ss_pred             cchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce---ecHHHHHHHHHHhCC-
Q 028329           77 TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV---VTKKEGINFAREYGC-  152 (210)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~~~-  152 (210)
                      .....-....|+.|+|+.++|..--+.-..  +.+-++   -.-..++|.+||.|+.+..+   .-..+++++...+++ 
T Consensus       132 KNMItGaaqMDGaILVVaatDG~MPQTrEH--lLLArQ---VGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~  206 (449)
T KOG0460|consen  132 KNMITGAAQMDGAILVVAATDGPMPQTREH--LLLARQ---VGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD  206 (449)
T ss_pred             HHhhcCccccCceEEEEEcCCCCCcchHHH--HHHHHH---cCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence            666666677899999999998643222221  111111   11245788889999963332   233456677677654 


Q ss_pred             ----cEEEEccC
Q 028329          153 ----LFIECSAK  160 (210)
Q Consensus       153 ----~~~~~sa~  160 (210)
                          |++.-||.
T Consensus       207 Gd~~PvI~GSAL  218 (449)
T KOG0460|consen  207 GDNTPVIRGSAL  218 (449)
T ss_pred             CCCCCeeecchh
Confidence                57776654

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.38  E-value=5e-06  Score=65.42  Aligned_cols=165  Identities=14%  Similarity=0.105  Sum_probs=99.2

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-------------Cce--eeeEEEEEEECCe-------------
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-------------TIG--VDFKVKYVDVGGK-------------   60 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-------------~~~--~~~~~~~~~~~~~-------------   60 (210)
                      ++....+.|.+.|+.+.|||||+-.|..+......-             ..+  .+.....+.+++.             
T Consensus       112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE  191 (527)
T COG5258         112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE  191 (527)
T ss_pred             cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence            344567899999999999999998887554221110             001  1111122222221             


Q ss_pred             --------EEEEEEEeCCCccccccchh--hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028329           61 --------KLKLAIWDTAGQERFRTLTS--SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV  130 (210)
Q Consensus        61 --------~~~~~l~D~~g~~~~~~~~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~  130 (210)
                              +--+.|.|+.|++.|-+...  .+-.+.|-.++++.+++.-+-..-..     +.. ...-+.|++|+.+|+
T Consensus       192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEH-----Lgi-~~a~~lPviVvvTK~  265 (527)
T COG5258         192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEH-----LGI-ALAMELPVIVVVTKI  265 (527)
T ss_pred             HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHh-----hhh-hhhhcCCEEEEEEec
Confidence                    13578889999988776432  23457899999999998765433332     111 113468999999999


Q ss_pred             CCCCCceec--HHHHHHHH----------------------HHh---CCcEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028329          131 DKESERVVT--KKEGINFA----------------------REY---GCLFIECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       131 D~~~~~~~~--~~~~~~~~----------------------~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      |+.......  .+++....                      -+.   =+|+|.+|+.+|+|++- ++.+...+.+++
T Consensus       266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gldl-L~e~f~~Lp~rr  341 (527)
T COG5258         266 DMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDL-LDEFFLLLPKRR  341 (527)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHH-HHHHHHhCCccc
Confidence            985432211  11111111                      111   24789999999999876 555555555553

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.38  E-value=8.7e-07  Score=70.97  Aligned_cols=57  Identities=25%  Similarity=0.349  Sum_probs=42.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNF-----EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER   74 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (210)
                      .++.++|.+|||||||+|+|++...     ......+++|.....+.++..   +.++||||...
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~~  216 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGIIN  216 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCCC
Confidence            4899999999999999999997432     234446777777776665332   56889999543

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.38  E-value=9.5e-07  Score=61.29  Aligned_cols=79  Identities=15%  Similarity=0.126  Sum_probs=52.7

Q ss_pred             hhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEcc
Q 028329           80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  159 (210)
                      ...+..+|++++|+|+.++.+.... . +...+...  ..++|+++|+||+|+..+..  ...........+..++.+||
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~-~-l~~~l~~~--~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa   79 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPP-D-LERYVKEV--DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA   79 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCH-H-HHHHHHhc--cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence            3457789999999999987654421 1 33333321  14689999999999854332  22334455566778999999


Q ss_pred             CCCCC
Q 028329          160 KTRVN  164 (210)
Q Consensus       160 ~~~~~  164 (210)
                      +++.+
T Consensus        80 ~~~~~   84 (141)
T cd01857          80 LKENA   84 (141)
T ss_pred             cCCCc
Confidence            88753

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.37  E-value=4.1e-06  Score=65.87  Aligned_cols=94  Identities=17%  Similarity=0.141  Sum_probs=54.7

Q ss_pred             EEEEEEEeCCCccccccc----hhhc--------ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEe
Q 028329           61 KLKLAIWDTAGQERFRTL----TSSY--------YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN  128 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~n  128 (210)
                      .+.+.++||||.......    ....        -...+..++|+|++...  ..+.+ .......    . .+.-+|.|
T Consensus       196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~----~-~~~giIlT  267 (318)
T PRK10416        196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA----V-GLTGIILT  267 (318)
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh----C-CCCEEEEE
Confidence            357899999996543221    1111        12467889999998543  22222 1111111    1 23368999


Q ss_pred             CCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329          129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus       129 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  168 (210)
                      |.|....    .-.+...+...+.|+..++  +|.+++++
T Consensus       268 KlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl  301 (318)
T PRK10416        268 KLDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDL  301 (318)
T ss_pred             CCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence            9995432    2245556677799988888  66666664

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.31  E-value=3.2e-06  Score=59.85  Aligned_cols=65  Identities=14%  Similarity=0.149  Sum_probs=37.5

Q ss_pred             EEEEEEEeCCCccccccchhh--------cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028329           61 KLKLAIWDTAGQERFRTLTSS--------YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK  132 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~  132 (210)
                      .....++|++|..........        ..-..|.++.++|+............+...+..       .-+|+.||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~-------ad~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF-------ADRILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH-------CCEEEEecccC
Confidence            356788899996543333322        233579999999976533222111223333332       12689999995

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.30  E-value=3.4e-06  Score=64.96  Aligned_cols=94  Identities=13%  Similarity=0.105  Sum_probs=55.5

Q ss_pred             EEEEEEEeCCCccccccchhh-------c-----ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEe
Q 028329           61 KLKLAIWDTAGQERFRTLTSS-------Y-----YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN  128 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~-------~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~n  128 (210)
                      .+.+.++||+|..........       .     -..+|.+++|+|++-..  ..+.. .....+.    .+ +--+|.|
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~-~~~f~~~----~~-~~g~IlT  225 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQ-AKVFNEA----VG-LTGIILT  225 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHH-HHHHHhh----CC-CCEEEEE
Confidence            467899999997554332211       1     12379999999997432  22221 2121111    11 3468999


Q ss_pred             CCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329          129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus       129 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  168 (210)
                      |.|.....    ..+..+....+.|+.+++  +|.+++++
T Consensus       226 KlDe~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl  259 (272)
T TIGR00064       226 KLDGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDL  259 (272)
T ss_pred             ccCCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhC
Confidence            99974332    234555667789988887  66666664

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.29  E-value=3.7e-06  Score=65.37  Aligned_cols=100  Identities=20%  Similarity=0.123  Sum_probs=65.9

Q ss_pred             CCCccccc-cchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH
Q 028329           69 TAGQERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA  147 (210)
Q Consensus        69 ~~g~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~  147 (210)
                      +|||..-. ......+..+|++++|+|+.++.+.... . +...+      .+.|+++|.||+|+.....  .+....+.
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~-~-l~~~~------~~kp~iiVlNK~DL~~~~~--~~~~~~~~   76 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENP-M-IDKII------GNKPRLLILNKSDLADPEV--TKKWIEYF   76 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCCh-h-HHHHh------CCCCEEEEEEchhcCCHHH--HHHHHHHH
Confidence            46653322 2345567889999999999887553322 1 22222      1578999999999853311  11222223


Q ss_pred             HHhCCcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329          148 REYGCLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       148 ~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      ...+.+++.+|++++.|++++.+.+...+.+
T Consensus        77 ~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         77 EEQGIKALAINAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             HHcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence            3446778999999999999999988887654

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.28  E-value=2e-06  Score=64.28  Aligned_cols=73  Identities=21%  Similarity=0.191  Sum_probs=50.3

Q ss_pred             eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcc-------cHHHHHHH--HHHHHhhhccCCCCcEEEEEeCC
Q 028329           60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD-------TFTNLSDV--WAKEIDLYSTNQDCIKLLVGNKV  130 (210)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~--~~~~~~~~~~~~~~piivv~nK~  130 (210)
                      ..+.++++|.+|+...+..|...+..+.++|+|+..+..+       +-..+.+.  +...+=.......+.+|+..||.
T Consensus       200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq  279 (379)
T KOG0099|consen  200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ  279 (379)
T ss_pred             cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence            4457899999999999999999999999999999987532       11222210  11111111222457889999999


Q ss_pred             CC
Q 028329          131 DK  132 (210)
Q Consensus       131 D~  132 (210)
                      |+
T Consensus       280 Dl  281 (379)
T KOG0099|consen  280 DL  281 (379)
T ss_pred             HH
Confidence            97

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.28  E-value=7.6e-06  Score=64.32  Aligned_cols=166  Identities=16%  Similarity=0.188  Sum_probs=93.4

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-----------------C-------CCceeeeE-------------EEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-----------------S-------PTIGVDFK-------------VKYV   55 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-----------------~-------~~~~~~~~-------------~~~~   55 (210)
                      ..++|.++|...+|||||+-.|+.+.....                 .       ...+++..             ..++
T Consensus       132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv  211 (641)
T KOG0463|consen  132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV  211 (641)
T ss_pred             eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence            468999999999999999877753321100                 0       01111110             1111


Q ss_pred             EE-CCeEEEEEEEeCCCccccccchhhccc--CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028329           56 DV-GGKKLKLAIWDTAGQERFRTLTSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK  132 (210)
Q Consensus        56 ~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~  132 (210)
                      .+ +....-++|+|++|++.|-.....-..  -.|..++++-++..---...     +.+.. .....+|++||++|+|+
T Consensus       212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTK-----EHLgL-ALaL~VPVfvVVTKIDM  285 (641)
T KOG0463|consen  212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTK-----EHLGL-ALALHVPVFVVVTKIDM  285 (641)
T ss_pred             eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccH-----Hhhhh-hhhhcCcEEEEEEeecc
Confidence            11 222345789999999988765443332  35777888877653211111     11111 12346899999999998


Q ss_pred             CCCceecHHHHHHHHH-----------------------------HhCCcEEEEccCCCCCHHHHHHHHHHHHHcCCCcc
Q 028329          133 ESERVVTKKEGINFAR-----------------------------EYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL  183 (210)
Q Consensus       133 ~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~  183 (210)
                      -....... ..+.+.+                             +.-+++|.+|..+|.|++- +...++.+--+++..
T Consensus       286 CPANiLqE-tmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L-LkmFLNlls~R~~~~  363 (641)
T KOG0463|consen  286 CPANILQE-TMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL-LKMFLNLLSLRRQLN  363 (641)
T ss_pred             CcHHHHHH-HHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH-HHHHHhhcCcccccc
Confidence            54432221 1111111                             1125689999999999875 555566665555544


Q ss_pred             ccc
Q 028329          184 AEG  186 (210)
Q Consensus       184 ~~~  186 (210)
                      +.+
T Consensus       364 E~~  366 (641)
T KOG0463|consen  364 END  366 (641)
T ss_pred             cCC
Confidence            433

>PRK14974 cell division protein FtsY; Provisional

Probab=98.25  E-value=7.8e-06  Score=64.58  Aligned_cols=94  Identities=13%  Similarity=0.111  Sum_probs=55.3

Q ss_pred             EEEEEEeCCCccccccch----hhc--ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329           62 LKLAIWDTAGQERFRTLT----SSY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~  135 (210)
                      ..+.++||+|........    ..+  ..+.|.+++|+|+............+...       .++ --+|.||.|....
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~-------~~~-~giIlTKlD~~~~  294 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA-------VGI-DGVILTKVDADAK  294 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhc-------CCC-CEEEEeeecCCCC
Confidence            458999999965432211    111  22578999999987643222211112221       122 3689999997533


Q ss_pred             ceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329          136 RVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  169 (210)
                      --    .+...+...+.|+.+++  +|.+++++.
T Consensus       295 ~G----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~  322 (336)
T PRK14974        295 GG----AALSIAYVIGKPILFLG--VGQGYDDLI  322 (336)
T ss_pred             cc----HHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence            22    34555566789988877  677777754

>PRK00098 GTPase RsgA; Reviewed

Probab=98.24  E-value=2.9e-06  Score=66.30  Aligned_cols=57  Identities=28%  Similarity=0.294  Sum_probs=37.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCc-------eeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTI-------GVDFKVKYVDVGGKKLKLAIWDTAGQER   74 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (210)
                      ..++++|++|||||||+|+|.+..........       .+|.....+.+.+.   ..++|+||...
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~  228 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS  228 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence            46889999999999999999976543322211       13333444444432   36789999654

>PRK01889 GTPase RsgA; Reviewed

Probab=98.24  E-value=8.3e-06  Score=65.24  Aligned_cols=85  Identities=11%  Similarity=0.007  Sum_probs=56.1

Q ss_pred             cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCC
Q 028329           82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT  161 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  161 (210)
                      ...++|.+++|+++..+-....+.. ++.....    .+++.+||+||+|+........+....+  ..+.+++.+|+++
T Consensus       109 iaANvD~vliV~s~~p~~~~~~ldr-~L~~a~~----~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~  181 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRRIER-YLALAWE----SGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALD  181 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhHHHH-HHHHHHH----cCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCC
Confidence            4678999999999974433333332 4444443    4667799999999964311111111221  3467899999999


Q ss_pred             CCCHHHHHHHHH
Q 028329          162 RVNVQQCFEELV  173 (210)
Q Consensus       162 ~~~i~~~~~~l~  173 (210)
                      +.|++++..++.
T Consensus       182 g~gl~~L~~~L~  193 (356)
T PRK01889        182 GEGLDVLAAWLS  193 (356)
T ss_pred             CccHHHHHHHhh
Confidence            999999888764

>PRK13796 GTPase YqeH; Provisional

Probab=98.23  E-value=1e-05  Score=64.95  Aligned_cols=84  Identities=21%  Similarity=0.239  Sum_probs=56.7

Q ss_pred             ccCcc-EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHH----HHHHHhCC---cE
Q 028329           83 YRGAQ-GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGI----NFAREYGC---LF  154 (210)
Q Consensus        83 ~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~----~~~~~~~~---~~  154 (210)
                      +...| .+++|+|+.+...-      |...+....  .+.|+++|+||+|+... ....+.+.    .++...++   .+
T Consensus        66 i~~~~~lIv~VVD~~D~~~s------~~~~L~~~~--~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g~~~~~v  136 (365)
T PRK13796         66 IGDSDALVVNVVDIFDFNGS------WIPGLHRFV--GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELGLRPVDV  136 (365)
T ss_pred             hcccCcEEEEEEECccCCCc------hhHHHHHHh--CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcCCCcCcE
Confidence            34444 99999999875421      444444432  25789999999999543 22222333    33445565   58


Q ss_pred             EEEccCCCCCHHHHHHHHHHH
Q 028329          155 IECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       155 ~~~sa~~~~~i~~~~~~l~~~  175 (210)
                      +.+||+++.|++++++.+.+.
T Consensus       137 ~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        137 VLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999998765

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.22  E-value=9.8e-06  Score=74.14  Aligned_cols=112  Identities=19%  Similarity=0.203  Sum_probs=64.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCC-----C--CceeeeEEEEEEECCeEEEEEEEeCCCcc--------ccccchhh
Q 028329           17 LLMIGDSGVGKSSLLLSFTSDNFEELS-----P--TIGVDFKVKYVDVGGKKLKLAIWDTAGQE--------RFRTLTSS   81 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~   81 (210)
                      .+|+|++|+||||++..- +..++-..     .  ..+.+..+... +..   .-.++|++|.-        .....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~ww-f~~---~avliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWW-FTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceE-ecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence            589999999999999887 33442211     0  12222222222 222   24688999921        12234555


Q ss_pred             cc---------cCccEEEEEEeCCCccc-----H----HHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329           82 YY---------RGAQGIIMVYDVTRRDT-----F----TNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        82 ~~---------~~~d~~i~v~d~~~~~s-----~----~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~  135 (210)
                      ++         +-.|++|+++|+.+--.     .    ..++. .+..+.. ......|++|++||+|+...
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~-rl~el~~-~lg~~~PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQ-RLQELRE-QLGARFPVYLVLTKADLLAG  258 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHH-HHHHHHH-HhCCCCCEEEEEecchhhcC
Confidence            44         24799999999775321     1    12222 2233333 23457999999999998533

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.21  E-value=3.2e-06  Score=65.68  Aligned_cols=58  Identities=24%  Similarity=0.272  Sum_probs=38.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-------CceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-------TIGVDFKVKYVDVGGKKLKLAIWDTAGQERF   75 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (210)
                      ..++++|++|+|||||+|.|.+........       ...+|.....+.....   ..++|+||...+
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence            579999999999999999999765432221       1123444444454422   258899997554

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.18  E-value=3.1e-06  Score=66.87  Aligned_cols=160  Identities=18%  Similarity=0.125  Sum_probs=96.0

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCC------------------------------CCCCCCCceeeeEEEEEEECC
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDN------------------------------FEELSPTIGVDFKVKYVDVGG   59 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~   59 (210)
                      +....++++|+|+..+||||+-..+....                              .......-+.+...-...+..
T Consensus        75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt  154 (501)
T KOG0459|consen   75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET  154 (501)
T ss_pred             CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence            34567999999999999999866553210                              001111222333333334444


Q ss_pred             eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcc---cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329           60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~  136 (210)
                      ..-.+++.|.||+..|......-..++|..++|+++...+   .|+.--+ -.+.........-...|+++||+|-+...
T Consensus       155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQ-TREha~Lakt~gv~~lVv~vNKMddPtvn  233 (501)
T KOG0459|consen  155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQ-TREHAMLAKTAGVKHLIVLINKMDDPTVN  233 (501)
T ss_pred             cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccc-hhHHHHHHHhhccceEEEEEEeccCCccC
Confidence            5567899999999998887777788899999999986432   2322211 11111111112335678999999964221


Q ss_pred             ------eecHHHHHHHHHHhC------CcEEEEccCCCCCHHHHHH
Q 028329          137 ------VVTKKEGINFAREYG------CLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus       137 ------~~~~~~~~~~~~~~~------~~~~~~sa~~~~~i~~~~~  170 (210)
                            ....+....+....|      ..++++|..+|.++++..+
T Consensus       234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence                  111222333333333      3499999999999988654

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=4.9e-05  Score=56.69  Aligned_cols=158  Identities=25%  Similarity=0.372  Sum_probs=93.7

Q ss_pred             EEEEEEEcCCCC--cHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeE--EEEEEEeCCC-ccccccchhhcccCcc
Q 028329           14 LFKLLMIGDSGV--GKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKK--LKLAIWDTAG-QERFRTLTSSYYRGAQ   87 (210)
Q Consensus        14 ~~~i~v~G~~~~--GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~l~D~~g-~~~~~~~~~~~~~~~d   87 (210)
                      ...++++|.+|+  ||.+|+.+|....+..... ...++++-..  ++++.  ..+.+.-.+- ++.+-... ....-..
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwt--id~kyysadi~lcishicde~~lpn~-~~a~pl~   80 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWT--IDNKYYSADINLCISHICDEKFLPNA-EIAEPLQ   80 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceE--ecceeeecceeEEeecccchhccCCc-cccccee
Confidence            356789999999  9999999999887754433 3333333222  22221  1122211111 11111111 1123357


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC--------------------------------
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE--------------------------------  135 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--------------------------------  135 (210)
                      ++++|||++....+..+.. |+..-...  ..++ .+-++||.|....                                
T Consensus        81 a~vmvfdlse~s~l~alqd-wl~htdin--sfdi-llcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgise  156 (418)
T KOG4273|consen   81 AFVMVFDLSEKSGLDALQD-WLPHTDIN--SFDI-LLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISE  156 (418)
T ss_pred             eEEEEEeccchhhhHHHHh-hccccccc--cchh-heecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccc
Confidence            8999999999988888887 87755432  1222 3567799986211                                


Q ss_pred             ------------ceecHHHHHHHHHHhCCcEEEEccCCC------------CCHHHHHHHHHHHHHc
Q 028329          136 ------------RVVTKKEGINFAREYGCLFIECSAKTR------------VNVQQCFEELVLKILD  178 (210)
Q Consensus       136 ------------~~~~~~~~~~~~~~~~~~~~~~sa~~~------------~~i~~~~~~l~~~~~~  178 (210)
                                  .-.......+|+.++++.+++.++.+.            .|++.+|..+...+..
T Consensus       157 tegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwp  223 (418)
T KOG4273|consen  157 TEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWP  223 (418)
T ss_pred             cccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCc
Confidence                        001123356788888999999888543            2788888888765543

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.15  E-value=2e-06  Score=67.79  Aligned_cols=59  Identities=24%  Similarity=0.338  Sum_probs=50.6

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ   72 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (210)
                      -.+.+++.|+|.|++||||+||+|...........+|.|.....+..+.   .+.|.|.||.
T Consensus       249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccC---CceeccCCce
Confidence            3578999999999999999999999988888888888888877777655   4788899994

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.13  E-value=5.2e-06  Score=63.77  Aligned_cols=58  Identities=26%  Similarity=0.300  Sum_probs=38.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC------CCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNF------EELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR   76 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (210)
                      ..+++|.+|||||||+|+|.....      ++.. ....+|....-+.+.+..   .++||||...+.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence            567889999999999999986432      2222 133345556666664322   456999976544

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.11  E-value=1.7e-05  Score=59.97  Aligned_cols=118  Identities=25%  Similarity=0.395  Sum_probs=72.7

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---CceeeeE--EEEEEECCeEEEEEEEeCCCc-------cccccc--
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP---TIGVDFK--VKYVDVGGKKLKLAIWDTAGQ-------ERFRTL--   78 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~l~D~~g~-------~~~~~~--   78 (210)
                      -.|+|+.+|..|.|||||+..|.+..+.....   .++....  ...+.-.+..+++++.||.|.       +.|.+.  
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd  120 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD  120 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence            46999999999999999999999877643222   2222222  333344777889999999982       111111  


Q ss_pred             -----hhhc-------------c--cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329           79 -----TSSY-------------Y--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        79 -----~~~~-------------~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~  136 (210)
                           ...+             +  ...++++|.+..+. .++..+.......+.     ..+.||-++-|.|-....
T Consensus       121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld-----skVNIIPvIAKaDtisK~  192 (406)
T KOG3859|consen  121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD-----SKVNIIPVIAKADTISKE  192 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh-----hhhhhHHHHHHhhhhhHH
Confidence                 1111             1  24688888888774 445555443333333     346667777788865443

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.10  E-value=5.7e-05  Score=61.47  Aligned_cols=87  Identities=13%  Similarity=0.089  Sum_probs=48.7

Q ss_pred             EEEEEEEeCCCccccccchhh----c--ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329           61 KLKLAIWDTAGQERFRTLTSS----Y--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~----~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~  134 (210)
                      .+.+.|+||+|..........    .  ....|-+++|+|+.-...-.....    .+..   . -.+--+|.||.|...
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~----~F~~---~-~~~~g~IlTKlD~~a  253 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAK----AFKD---S-VDVGSVIITKLDGHA  253 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHH----HHHh---c-cCCcEEEEECccCCC
Confidence            467899999996544322111    1  234688999999875543322222    2221   1 124468999999743


Q ss_pred             CceecHHHHHHHHHHhCCcEEEEcc
Q 028329          135 ERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~sa  159 (210)
                      .-    -.+.......+.|+.+++.
T Consensus       254 rg----G~aLs~~~~t~~PI~fig~  274 (429)
T TIGR01425       254 KG----GGALSAVAATKSPIIFIGT  274 (429)
T ss_pred             Cc----cHHhhhHHHHCCCeEEEcC
Confidence            21    1234445566776555543

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK13695 putative NTPase; Provisional

Probab=98.04  E-value=0.00017  Score=51.88  Aligned_cols=80  Identities=11%  Similarity=0.012  Sum_probs=43.2

Q ss_pred             cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCC
Q 028329           82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT  161 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  161 (210)
                      .+..+++  +++|--.+  .+.....+...+.... ..+.|++++.|+....       .....+....+..++++   +
T Consensus        93 ~l~~~~~--lllDE~~~--~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~~-------~~~~~i~~~~~~~i~~~---~  157 (174)
T PRK13695         93 ALEEADV--IIIDEIGK--MELKSPKFVKAVEEVL-DSEKPVIATLHRRSVH-------PFVQEIKSRPGGRVYEL---T  157 (174)
T ss_pred             ccCCCCE--EEEECCCc--chhhhHHHHHHHHHHH-hCCCeEEEEECchhhH-------HHHHHHhccCCcEEEEE---c
Confidence            3445666  67883211  1122222445554433 4568989999885321       12233444456667776   4


Q ss_pred             CCCHHHHHHHHHHHH
Q 028329          162 RVNVQQCFEELVLKI  176 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~  176 (210)
                      .+|=+++...+++.+
T Consensus       158 ~~~r~~~~~~~~~~~  172 (174)
T PRK13695        158 PENRDSLPFEILNRL  172 (174)
T ss_pred             chhhhhHHHHHHHHH
Confidence            455567777777755

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.97  E-value=2e-05  Score=65.42  Aligned_cols=119  Identities=16%  Similarity=0.178  Sum_probs=82.2

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCC-----C------------CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNF-----E------------ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER   74 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~-----~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (210)
                      ...-+|.+.-+-.+||||+-++.+...-     .            +.....+.+...........++.+.++||||+-.
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD  116 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD  116 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence            4566788889999999999988753210     0            1111234444454455555688999999999988


Q ss_pred             cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329           75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~  136 (210)
                      |.-.....++--|+.|+|+|+...-.-....- |.+.-     .-++|.+..+||+|.....
T Consensus       117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV-~rQ~~-----ry~vP~i~FiNKmDRmGa~  172 (721)
T KOG0465|consen  117 FTFEVERALRVLDGAVLVLDAVAGVESQTETV-WRQMK-----RYNVPRICFINKMDRMGAS  172 (721)
T ss_pred             EEEEehhhhhhccCeEEEEEcccceehhhHHH-HHHHH-----hcCCCeEEEEehhhhcCCC
Confidence            88777778888899999999876543333332 44433     2479999999999975443

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.97  E-value=5.9e-05  Score=60.40  Aligned_cols=142  Identities=15%  Similarity=0.122  Sum_probs=72.8

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCC-C-CC--Cceeee------------------EEEEEEE---------CCeEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEE-L-SP--TIGVDF------------------KVKYVDV---------GGKKL   62 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~-~-~~--~~~~~~------------------~~~~~~~---------~~~~~   62 (210)
                      .-.++++|++||||||++..|....... . ..  ....+.                  ......-         .....
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~  216 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK  216 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence            4578899999999999998886431100 0 00  000000                  0000000         11234


Q ss_pred             EEEEEeCCCccccccchhh---cc---cCccEEEEEEeCCCc-ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329           63 KLAIWDTAGQERFRTLTSS---YY---RGAQGIIMVYDVTRR-DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~---~~---~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~  135 (210)
                      .+.++||+|..........   .+   ....-.++|++++.. +....+...|......-.....-+-=+|.||.|... 
T Consensus       217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~-  295 (374)
T PRK14722        217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS-  295 (374)
T ss_pred             CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC-
Confidence            7889999996654432211   12   223456888888754 333434332322211000000012247889999643 


Q ss_pred             ceecHHHHHHHHHHhCCcEEEEcc
Q 028329          136 RVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~sa  159 (210)
                         ..-.+..+....+.++.+++.
T Consensus       296 ---~~G~~l~~~~~~~lPi~yvt~  316 (374)
T PRK14722        296 ---NLGGVLDTVIRYKLPVHYVST  316 (374)
T ss_pred             ---CccHHHHHHHHHCcCeEEEec
Confidence               333456677777888666654

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.96  E-value=5e-05  Score=55.66  Aligned_cols=86  Identities=15%  Similarity=0.062  Sum_probs=49.0

Q ss_pred             EEEEEEeCCCccccccch----hhcc--cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329           62 LKLAIWDTAGQERFRTLT----SSYY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~----~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~  135 (210)
                      +.+.++||+|........    ..++  ...+-+++|++++....-...   .......    .++ -=+|.||.|... 
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~---~~~~~~~----~~~-~~lIlTKlDet~-  154 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQ---ALAFYEA----FGI-DGLILTKLDETA-  154 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHH---HHHHHHH----SST-CEEEEESTTSSS-
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHH---HHHHhhc----ccC-ceEEEEeecCCC-
Confidence            458999999965544321    1111  156789999998865432221   2222221    111 247799999642 


Q ss_pred             ceecHHHHHHHHHHhCCcEEEEcc
Q 028329          136 RVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~sa  159 (210)
                         ..-.+..+....+.|+-.++.
T Consensus       155 ---~~G~~l~~~~~~~~Pi~~it~  175 (196)
T PF00448_consen  155 ---RLGALLSLAYESGLPISYITT  175 (196)
T ss_dssp             ---TTHHHHHHHHHHTSEEEEEES
T ss_pred             ---CcccceeHHHHhCCCeEEEEC
Confidence               233456777788888666654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.95  E-value=0.00012  Score=56.37  Aligned_cols=93  Identities=22%  Similarity=0.136  Sum_probs=67.4

Q ss_pred             chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEE
Q 028329           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIEC  157 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (210)
                      +.+....++|-.++|+.+.+|+--......++-....    .++.-+|+.||+|+........++........+.+++.+
T Consensus        72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~----~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~  147 (301)
T COG1162          72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA----GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV  147 (301)
T ss_pred             eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH----cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence            4444556688888999988887655555534444443    456668889999997665444345666777889999999


Q ss_pred             ccCCCCCHHHHHHHHHH
Q 028329          158 SAKTRVNVQQCFEELVL  174 (210)
Q Consensus       158 sa~~~~~i~~~~~~l~~  174 (210)
                      |++++.+++++.+.+..
T Consensus       148 s~~~~~~~~~l~~~l~~  164 (301)
T COG1162         148 SAKNGDGLEELAELLAG  164 (301)
T ss_pred             cCcCcccHHHHHHHhcC
Confidence            99999999887776544

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.91  E-value=0.00021  Score=56.31  Aligned_cols=98  Identities=14%  Similarity=0.160  Sum_probs=56.4

Q ss_pred             EEEEEEeCCCccccccchhhccc--------CccEEEEEEeCCCcccHHH-HHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028329           62 LKLAIWDTAGQERFRTLTSSYYR--------GAQGIIMVYDVTRRDTFTN-LSDVWAKEIDLYSTNQDCIKLLVGNKVDK  132 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~piivv~nK~D~  132 (210)
                      +...++++.|-....+....+..        ..|+++-|+|+.+-..... ..+.+...+..    .   =+|++||.|+
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~----A---D~ivlNK~Dl  157 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF----A---DVIVLNKTDL  157 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh----C---cEEEEecccC
Confidence            45677788885554443333322        3588999999887544332 22323333332    1   2799999999


Q ss_pred             CCCceecHHHHHHHHHHh--CCcEEEEccCCCCCHHHHH
Q 028329          133 ESERVVTKKEGINFAREY--GCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~~~~i~~~~  169 (210)
                      .....  .+..+...+..  .++++.++. .+.+..+++
T Consensus       158 v~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll  193 (323)
T COG0523         158 VDAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELL  193 (323)
T ss_pred             CCHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence            76653  33344455544  356777776 344444333

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.89  E-value=5.4e-05  Score=52.94  Aligned_cols=58  Identities=17%  Similarity=0.202  Sum_probs=35.7

Q ss_pred             EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCC
Q 028329           61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD  131 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D  131 (210)
                      .+.+.|+|++|...   ....++..+|-++++...+-.+.+.-++.   ..+       ...-++++||.|
T Consensus        91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~~-------~~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIKA---GIM-------EIADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhhh---hHh-------hhcCEEEEeCCC
Confidence            46789999988542   22347788999999988773332222211   111       123478999987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.88  E-value=7.3e-05  Score=53.63  Aligned_cols=82  Identities=16%  Similarity=0.157  Sum_probs=43.9

Q ss_pred             EEEEEEeCCCccccccc----hhhc--ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329           62 LKLAIWDTAGQERFRTL----TSSY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~  135 (210)
                      ..+.++|++|.......    ...+  ....+.+++|+|+.....   ... +...+....   + ..-+|.||.|....
T Consensus        83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~-~~~~~~~~~---~-~~~viltk~D~~~~  154 (173)
T cd03115          83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVN-QAKAFNEAL---G-ITGVILTKLDGDAR  154 (173)
T ss_pred             CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHH-HHHHHHhhC---C-CCEEEEECCcCCCC
Confidence            45788999997533221    1111  124899999999864432   222 222222211   2 24577799997433


Q ss_pred             ceecHHHHHHHHHHhCCcEE
Q 028329          136 RVVTKKEGINFAREYGCLFI  155 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~  155 (210)
                      ..    .+...+...+.|+.
T Consensus       155 ~g----~~~~~~~~~~~p~~  170 (173)
T cd03115         155 GG----AALSIRAVTGKPIK  170 (173)
T ss_pred             cc----hhhhhHHHHCcCeE
Confidence            22    23335556666643

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.85  E-value=8.5e-05  Score=59.62  Aligned_cols=86  Identities=12%  Similarity=0.104  Sum_probs=48.1

Q ss_pred             EEEEEEeCCCccccccc----hhhcc--cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329           62 LKLAIWDTAGQERFRTL----TSSYY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~  135 (210)
                      +.+.|+||+|.......    ....+  ...+.+++|+|++-...  .+.. ....+..    .+ +-=+|+||.|... 
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~--d~~~-i~~~F~~----~~-idglI~TKLDET~-  391 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK--DMIE-IITNFKD----IH-IDGIVFTKFDETA-  391 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH--HHHH-HHHHhcC----CC-CCEEEEEcccCCC-
Confidence            57899999996443221    22222  23577889998753321  1112 2222221    12 2258899999643 


Q ss_pred             ceecHHHHHHHHHHhCCcEEEEcc
Q 028329          136 RVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~sa  159 (210)
                         ..-.+..++...+.|+..++.
T Consensus       392 ---k~G~iLni~~~~~lPIsyit~  412 (436)
T PRK11889        392 ---SSGELLKIPAVSSAPIVLMTD  412 (436)
T ss_pred             ---CccHHHHHHHHHCcCEEEEeC
Confidence               233456667778888666554

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.80  E-value=0.00016  Score=58.81  Aligned_cols=135  Identities=13%  Similarity=0.103  Sum_probs=70.8

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCcee-eeE-----------------EEEEE-E-----------CCeE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGV-DFK-----------------VKYVD-V-----------GGKK   61 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~-~~~-----------------~~~~~-~-----------~~~~   61 (210)
                      ..-.|+++|++|+||||++..|.+....... ...+. +..                 -..+. .           .-..
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~  269 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG  269 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence            3458999999999999999877642100000 00000 000                 00000 0           1122


Q ss_pred             EEEEEEeCCCcccccc----chhhcc--cCccEEEEEEeCCC-cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329           62 LKLAIWDTAGQERFRT----LTSSYY--RGAQGIIMVYDVTR-RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~  134 (210)
                      ..+.++||+|......    ....+.  ....-.++|+|++- ......+..    .+..    .+ +-=+|+||.|...
T Consensus       270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~----~f~~----~~-~~~~I~TKlDEt~  340 (420)
T PRK14721        270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVIS----AYQG----HG-IHGCIITKVDEAA  340 (420)
T ss_pred             CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHH----HhcC----CC-CCEEEEEeeeCCC
Confidence            4678899999554322    111111  22456778889874 333333222    2211    11 2248899999643


Q ss_pred             CceecHHHHHHHHHHhCCcEEEEccC
Q 028329          135 ERVVTKKEGINFAREYGCLFIECSAK  160 (210)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~sa~  160 (210)
                          ..-.+..++...+.++.+++.-
T Consensus       341 ----~~G~~l~~~~~~~lPi~yvt~G  362 (420)
T PRK14721        341 ----SLGIALDAVIRRKLVLHYVTNG  362 (420)
T ss_pred             ----CccHHHHHHHHhCCCEEEEECC
Confidence                3334566777888887666543

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.79  E-value=0.00044  Score=54.52  Aligned_cols=96  Identities=10%  Similarity=0.151  Sum_probs=51.0

Q ss_pred             EEEEEEeCCCccccccchhhccc--------CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329           62 LKLAIWDTAGQERFRTLTSSYYR--------GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~  133 (210)
                      ....++++.|.....+....++.        ..++++.|+|+.+......-.......+..       --+|+.||+|+.
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~-------AD~IvlnK~Dl~  163 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-------ADRILLTKTDVA  163 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh-------CCEEEEeccccC
Confidence            45677899887655544433321        248899999987533221111112222221       227999999987


Q ss_pred             CCceecHHHHHHHHHHhC--CcEEEEccCCCCCHHHHH
Q 028329          134 SERVVTKKEGINFAREYG--CLFIECSAKTRVNVQQCF  169 (210)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~  169 (210)
                      ...    +......+..+  ++++.++ ........+|
T Consensus       164 ~~~----~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~  196 (318)
T PRK11537        164 GEA----EKLRERLARINARAPVYTVV-HGDIDLSLLF  196 (318)
T ss_pred             CHH----HHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence            532    34444444443  4566543 3334444444

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.79  E-value=0.0001  Score=53.26  Aligned_cols=82  Identities=23%  Similarity=0.257  Sum_probs=43.8

Q ss_pred             EEEEEEEeCCCccccccch--hh---cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329           61 KLKLAIWDTAGQERFRTLT--SS---YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~--~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~  135 (210)
                      .....++++.|........  ..   ..-..+.++.|+|+.+-.........+...+..       .=+|+.||.|+...
T Consensus        84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~-------ADvIvlnK~D~~~~  156 (178)
T PF02492_consen   84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF-------ADVIVLNKIDLVSD  156 (178)
T ss_dssp             C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT--------SEEEEE-GGGHHH
T ss_pred             CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh-------cCEEEEeccccCCh
Confidence            3566777888855444441  00   012468999999997643333444434455443       12799999998544


Q ss_pred             ceecHHHHHHHHHHh
Q 028329          136 RVVTKKEGINFAREY  150 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~  150 (210)
                      . ...+......+..
T Consensus       157 ~-~~i~~~~~~ir~l  170 (178)
T PF02492_consen  157 E-QKIERVREMIREL  170 (178)
T ss_dssp             H---HHHHHHHHHHH
T ss_pred             h-hHHHHHHHHHHHH
Confidence            4 2223344444443

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.75  E-value=0.00066  Score=55.70  Aligned_cols=86  Identities=17%  Similarity=0.148  Sum_probs=48.7

Q ss_pred             EEEEEEeCCCccccccch----h--hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329           62 LKLAIWDTAGQERFRTLT----S--SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~  135 (210)
                      ..+.++||+|........    .  ..+..+|.+++|+|++...   .... ....+..   ..+ ..-+|.||.|....
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~-~a~~F~~---~l~-i~gvIlTKlD~~a~  247 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKN-QAKAFHE---AVG-IGGIIITKLDGTAK  247 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHH-HHHHHHh---cCC-CCEEEEecccCCCc
Confidence            368999999965543221    1  1133578999999987642   2212 1122221   111 23578899996422


Q ss_pred             ceecHHHHHHHHHHhCCcEEEEcc
Q 028329          136 RVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~sa  159 (210)
                          .-.+.......+.|+.+++.
T Consensus       248 ----~G~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        248 ----GGGALSAVAETGAPIKFIGT  267 (437)
T ss_pred             ----ccHHHHHHHHHCcCEEEEec
Confidence                22455666677887665554

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.72  E-value=0.00013  Score=50.44  Aligned_cols=107  Identities=15%  Similarity=0.144  Sum_probs=59.8

Q ss_pred             EEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCC
Q 028329           18 LMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR   97 (210)
Q Consensus        18 ~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~   97 (210)
                      +.-|.+|+|||++.-.+...-..........+..   .......+.+.++|+|+..  .......+..+|.++++.+.+.
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~   78 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP   78 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh
Confidence            3457889999998766542211111111111111   0001112678999999743  3344567888999999999874


Q ss_pred             cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329           98 RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        98 ~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~  133 (210)
                       .++..... .+..+...  ....++.+|.|+.+..
T Consensus        79 -~s~~~~~~-~l~~l~~~--~~~~~~~lVvN~~~~~  110 (139)
T cd02038          79 -TSITDAYA-LIKKLAKQ--LRVLNFRVVVNRAESP  110 (139)
T ss_pred             -hHHHHHHH-HHHHHHHh--cCCCCEEEEEeCCCCH
Confidence             34444333 33333322  1345677999999753

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.72  E-value=0.00048  Score=57.42  Aligned_cols=88  Identities=15%  Similarity=0.190  Sum_probs=48.3

Q ss_pred             EEEEEEEeCCCccccccchhh---ccc--CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329           61 KLKLAIWDTAGQERFRTLTSS---YYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~  135 (210)
                      .+.+.|+|++|..........   .+.  .....++|++.+..  ...+..    .++.+..  ..+.-+|+||.|... 
T Consensus       428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~e----ii~~f~~--~~~~gvILTKlDEt~-  498 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDE----VVRRFAH--AKPQGVVLTKLDETG-  498 (559)
T ss_pred             cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHH----HHHHHHh--hCCeEEEEecCcCcc-
Confidence            467899999996543322110   011  12345677776642  222222    2222211  135579999999632 


Q ss_pred             ceecHHHHHHHHHHhCCcEEEEccC
Q 028329          136 RVVTKKEGINFAREYGCLFIECSAK  160 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~sa~  160 (210)
                         ....+.......+.++.+++.-
T Consensus       499 ---~lG~aLsv~~~~~LPI~yvt~G  520 (559)
T PRK12727        499 ---RFGSALSVVVDHQMPITWVTDG  520 (559)
T ss_pred             ---chhHHHHHHHHhCCCEEEEeCC
Confidence               3345677777888887666643

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.70  E-value=4.2e-05  Score=58.75  Aligned_cols=60  Identities=22%  Similarity=0.370  Sum_probs=41.6

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCC-----CCCCCCCceeeeEEEE-EEECCeEEEEEEEeCCCc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDN-----FEELSPTIGVDFKVKY-VDVGGKKLKLAIWDTAGQ   72 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~D~~g~   72 (210)
                      ...+.+.|+|-||+|||||+|++....     .......+|.|..+.. +.+.. .-.+.+.||||.
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~-rp~vy~iDTPGi  206 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISH-RPPVYLIDTPGI  206 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEecc-CCceEEecCCCc
Confidence            456899999999999999999885433     2344446666665554 33333 234778899995

>TIGR00959 ffh signal recognition particle protein

Probab=97.68  E-value=0.00039  Score=56.85  Aligned_cols=86  Identities=16%  Similarity=0.132  Sum_probs=48.7

Q ss_pred             EEEEEEeCCCccccccchhh----c--ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329           62 LKLAIWDTAGQERFRTLTSS----Y--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~----~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~  135 (210)
                      +.+.++||+|..........    +  .-..|.+++|+|+....   .... +...+...   .++ .=+|.||.|....
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~-~a~~f~~~---v~i-~giIlTKlD~~~~  254 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVN-TAKTFNER---LGL-TGVVLTKLDGDAR  254 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHH-HHHHHHhh---CCC-CEEEEeCccCccc
Confidence            46899999995443221111    1  22478899999987442   2222 22222221   122 2577999996422


Q ss_pred             ceecHHHHHHHHHHhCCcEEEEcc
Q 028329          136 RVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~sa  159 (210)
                      .    -.+.......++|+.++..
T Consensus       255 ~----G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       255 G----GAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             c----cHHHHHHHHHCcCEEEEeC
Confidence            2    2366667778888666554

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.64  E-value=0.00047  Score=56.48  Aligned_cols=86  Identities=15%  Similarity=0.134  Sum_probs=47.2

Q ss_pred             EEEEEEeCCCccccccc----hhhc--ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329           62 LKLAIWDTAGQERFRTL----TSSY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~  135 (210)
                      +.+.++||+|.......    ...+  .-..+.+++|+|+....   .... ....+..   ..++ .-+|.||.|....
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~-~a~~F~~---~~~i-~giIlTKlD~~~r  255 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVN-TAKAFNE---ALGL-TGVILTKLDGDAR  255 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHH-HHHHHHh---hCCC-CEEEEeCccCccc
Confidence            56899999995433221    1111  12467889999986432   2222 2222221   1122 2477799996432


Q ss_pred             ceecHHHHHHHHHHhCCcEEEEcc
Q 028329          136 RVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~sa  159 (210)
                      .    -.+.......++|+.+++.
T Consensus       256 g----G~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        256 G----GAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             c----cHHHHHHHHHCcCEEEEeC
Confidence            2    2356666777888665554

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.64  E-value=0.00017  Score=65.20  Aligned_cols=110  Identities=25%  Similarity=0.235  Sum_probs=61.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCC--CCCC-----CceeeeEEEEEEECCeEEEEEEEeCCCc--------cccccchhh
Q 028329           17 LLMIGDSGVGKSSLLLSFTSDNFE--ELSP-----TIGVDFKVKYVDVGGKKLKLAIWDTAGQ--------ERFRTLTSS   81 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~l~D~~g~--------~~~~~~~~~   81 (210)
                      -+|+|++|+||||++..-- ..|+  +...     ..+ |..+...    .+-.-.++||.|-        ......|..
T Consensus       128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~g-T~~cdww----f~deaVlIDtaGry~~q~s~~~~~~~~W~~  201 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPG-TRNCDWW----FTDEAVLIDTAGRYITQDSADEVDRAEWLG  201 (1188)
T ss_pred             eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCC-CcccCcc----cccceEEEcCCcceecccCcchhhHHHHHH
Confidence            4789999999999886543 2221  1111     112 2222211    1224577898882        122334554


Q ss_pred             c---------ccCccEEEEEEeCCCccc-----H----HHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329           82 Y---------YRGAQGIIMVYDVTRRDT-----F----TNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        82 ~---------~~~~d~~i~v~d~~~~~s-----~----~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~  134 (210)
                      +         .+..|++|+.+|+.+--+     -    ..++. -+..+.. ......|++|++||.|+..
T Consensus       202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~-RL~El~~-tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRA-RLQELRE-TLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHH-HHHHHHH-hhccCCceEEEEecccccc
Confidence            4         245799999999775211     1    11222 2334443 2345789999999999854

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.61  E-value=0.00047  Score=43.94  Aligned_cols=69  Identities=17%  Similarity=0.186  Sum_probs=44.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc-hhhcccCccEEEEEEeC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL-TSSYYRGAQGIIMVYDV   95 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~   95 (210)
                      +++.|.+|+||||+...+...-........         .++    .+.++|+++....... .......+|.++++++.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~---------~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~   68 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGKRVL---------LID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP   68 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEE---------EEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence            678899999999999887643211111111         111    6888899976443321 14556678999999987


Q ss_pred             CCc
Q 028329           96 TRR   98 (210)
Q Consensus        96 ~~~   98 (210)
                      ...
T Consensus        69 ~~~   71 (99)
T cd01983          69 EAL   71 (99)
T ss_pred             chh
Confidence            754

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.60  E-value=0.0002  Score=55.35  Aligned_cols=106  Identities=12%  Similarity=0.205  Sum_probs=66.6

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc-----------------
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ-----------------   72 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-----------------   72 (210)
                      ...+...++++|++|.|||+++++|.....+. ......            .+.+.....|..                 
T Consensus        57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~~~------------~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP  123 (302)
T PF05621_consen   57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SDEDAE------------RIPVVYVQMPPEPDERRFYSAILEALGAP  123 (302)
T ss_pred             cccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CCCCCc------------cccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence            44567889999999999999999999755332 221111            123333444331                 


Q ss_pred             -------cccccchhhcccCccEEEEEEeCCCc---ccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028329           73 -------ERFRTLTSSYYRGAQGIIMVYDVTRR---DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK  129 (210)
Q Consensus        73 -------~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~piivv~nK  129 (210)
                             ..........++...+=++++|--+.   -+...... ++..++...+.-.+|+|.+|+.
T Consensus       124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~-~Ln~LK~L~NeL~ipiV~vGt~  189 (302)
T PF05621_consen  124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQRE-FLNALKFLGNELQIPIVGVGTR  189 (302)
T ss_pred             cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHH-HHHHHHHHhhccCCCeEEeccH
Confidence                   11122233456677888999994432   23334444 7777777778889999999864

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.59  E-value=0.00032  Score=57.42  Aligned_cols=114  Identities=20%  Similarity=0.286  Sum_probs=76.1

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcC------------CCCCCC---CCceeeeEEEEEEE----------------CCeE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSD------------NFEELS---PTIGVDFKVKYVDV----------------GGKK   61 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~------------~~~~~~---~~~~~~~~~~~~~~----------------~~~~   61 (210)
                      ..-++.++.+..-|||||-..|...            .|....   ...+.++.+..+..                ++..
T Consensus        18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~   97 (842)
T KOG0469|consen   18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG   97 (842)
T ss_pred             ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence            3456788899999999999988522            121111   12333443333322                4557


Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028329           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK  132 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~  132 (210)
                      +-+.++|.||+..+.+...+.++-.|+.++|+|.-+.--.+.-.- +.+.+..    +-+| +++.||.|.
T Consensus        98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETV-LrQA~~E----RIkP-vlv~NK~DR  162 (842)
T KOG0469|consen   98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETV-LRQAIAE----RIKP-VLVMNKMDR  162 (842)
T ss_pred             eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHH-HHHHHHh----hccc-eEEeehhhH
Confidence            889999999999999999999999999999999876533222111 3333332    2355 788999996

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.59  E-value=6.2e-05  Score=50.54  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .|+|.|++||||||+++.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999864

...

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.59  E-value=0.00068  Score=54.36  Aligned_cols=109  Identities=17%  Similarity=0.146  Sum_probs=56.8

Q ss_pred             EEEEEEEeCCCccccccch----hhccc--CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcE-EEEEeCCCCC
Q 028329           61 KLKLAIWDTAGQERFRTLT----SSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK-LLVGNKVDKE  133 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~----~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pi-ivv~nK~D~~  133 (210)
                      .+.+.|+||.|.+.++...    ..++.  ...-+.+|++++...  ..+    ...+..+.   .+|+ =+|+||.|..
T Consensus       281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dl----kei~~~f~---~~~i~~~I~TKlDET  351 (407)
T COG1419         281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDL----KEIIKQFS---LFPIDGLIFTKLDET  351 (407)
T ss_pred             cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHH----HHHHHHhc---cCCcceeEEEccccc
Confidence            3578999999977666432    22222  234456677776442  222    22233322   1221 3888999953


Q ss_pred             CCceecHHHHHHHHHHhCCcEEEEccCCC--CCHHHH-HHHHHHHHHcCCCc
Q 028329          134 SERVVTKKEGINFAREYGCLFIECSAKTR--VNVQQC-FEELVLKILDTPSL  182 (210)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~--~~i~~~-~~~l~~~~~~~~~~  182 (210)
                          -..-.........+.|+-.++.-.+  ++|... -+|+++.+..-...
T Consensus       352 ----~s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~~  399 (407)
T COG1419         352 ----TSLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTFAN  399 (407)
T ss_pred             ----CchhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhccccc
Confidence                2333455566667777655554332  232221 34566665554433

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.57  E-value=0.00089  Score=54.94  Aligned_cols=88  Identities=15%  Similarity=0.150  Sum_probs=49.8

Q ss_pred             EEEEEEEeCCCcccccc----chhhccc---CccEEEEEEeCCCc-ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028329           61 KLKLAIWDTAGQERFRT----LTSSYYR---GAQGIIMVYDVTRR-DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK  132 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~----~~~~~~~---~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~  132 (210)
                      .+.+.|+|++|......    ....++.   ...-+++|++++-. ..+..+.    ..+..    .+. --+|.||.|.
T Consensus       299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~----~~f~~----~~~-~~vI~TKlDe  369 (424)
T PRK05703        299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIY----KHFSR----LPL-DGLIFTKLDE  369 (424)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHH----HHhCC----CCC-CEEEEecccc
Confidence            35789999999654431    2222333   23466778887643 2222222    22221    111 2588999996


Q ss_pred             CCCceecHHHHHHHHHHhCCcEEEEccCC
Q 028329          133 ESERVVTKKEGINFAREYGCLFIECSAKT  161 (210)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  161 (210)
                      ...    ...+..+....+.++.+++.-.
T Consensus       370 t~~----~G~i~~~~~~~~lPv~yit~Gq  394 (424)
T PRK05703        370 TSS----LGSILSLLIESGLPISYLTNGQ  394 (424)
T ss_pred             ccc----ccHHHHHHHHHCCCEEEEeCCC
Confidence            422    2346777788899877766543

>PRK08118 topology modulation protein; Reviewed

Probab=97.54  E-value=7.4e-05  Score=53.37  Aligned_cols=23  Identities=35%  Similarity=0.599  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -||+|+|++|||||||.+.|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            38999999999999999999854

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.53  E-value=0.00051  Score=47.11  Aligned_cols=25  Identities=32%  Similarity=0.590  Sum_probs=21.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~   39 (210)
                      -.+++.|++|+|||++++.+.....
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhh
Confidence            4688999999999999999986543

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.53  E-value=7e-05  Score=54.42  Aligned_cols=24  Identities=17%  Similarity=0.354  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .-|+|+|++|||||||+++|....
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            458899999999999999998643

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.53  E-value=0.00068  Score=54.32  Aligned_cols=88  Identities=10%  Similarity=0.102  Sum_probs=48.1

Q ss_pred             EEEEEEEeCCCccccccch----hhccc--CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329           61 KLKLAIWDTAGQERFRTLT----SSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~----~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~  134 (210)
                      .+.+.|+||+|........    ..+..  ..+.+++|.+++..  ...+.. ....+.    ..+ +--+|.||.|...
T Consensus       285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~-i~~~f~----~l~-i~glI~TKLDET~  356 (407)
T PRK12726        285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMT-ILPKLA----EIP-IDGFIITKMDETT  356 (407)
T ss_pred             CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHH-HHHhcC----cCC-CCEEEEEcccCCC
Confidence            3578999999975443321    11221  34666777776322  222222 211111    111 2358899999642


Q ss_pred             CceecHHHHHHHHHHhCCcEEEEccC
Q 028329          135 ERVVTKKEGINFAREYGCLFIECSAK  160 (210)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~sa~  160 (210)
                          ..-.+...+...+.|+..++.-
T Consensus       357 ----~~G~~Lsv~~~tglPIsylt~G  378 (407)
T PRK12726        357 ----RIGDLYTVMQETNLPVLYMTDG  378 (407)
T ss_pred             ----CccHHHHHHHHHCCCEEEEecC
Confidence                2334566777888887666643

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.49  E-value=9.1e-05  Score=53.37  Aligned_cols=23  Identities=30%  Similarity=0.680  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .||+|+|+|||||||+...|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999865

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.48  E-value=3.8e-05  Score=60.84  Aligned_cols=85  Identities=19%  Similarity=0.243  Sum_probs=55.8

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc--cchhhcccCcc
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR--TLTSSYYRGAQ   87 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--~~~~~~~~~~d   87 (210)
                      +....|-|.++|.||+||||+||.|.......+.|.+|.|--=..+.   -.-.+-|+|+||.....  +.....+   -
T Consensus       303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYIt---LmkrIfLIDcPGvVyps~dset~ivL---k  376 (572)
T KOG2423|consen  303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYIT---LMKRIFLIDCPGVVYPSSDSETDIVL---K  376 (572)
T ss_pred             cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHH---HHhceeEecCCCccCCCCCchHHHHh---h
Confidence            34567999999999999999999999888877777666443111111   22357788999954433  2233333   3


Q ss_pred             EEEEEEeCCCccc
Q 028329           88 GIIMVYDVTRRDT  100 (210)
Q Consensus        88 ~~i~v~d~~~~~s  100 (210)
                      +++-|=.+.+++.
T Consensus       377 GvVRVenv~~pe~  389 (572)
T KOG2423|consen  377 GVVRVENVKNPED  389 (572)
T ss_pred             ceeeeeecCCHHH
Confidence            5566666666643

>PRK07261 topology modulation protein; Provisional

Probab=97.46  E-value=0.00011  Score=52.75  Aligned_cols=22  Identities=41%  Similarity=0.625  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      +|+|+|.+|||||||++.|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999998743

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.45  E-value=0.00015  Score=53.67  Aligned_cols=26  Identities=27%  Similarity=0.446  Sum_probs=21.7

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ....-|+|+|++|||||||++.|...
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            35566888999999999999999754

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.45  E-value=0.00089  Score=54.36  Aligned_cols=133  Identities=17%  Similarity=0.229  Sum_probs=69.0

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCC-CC----------CCCC------------CceeeeEEEE-E-----EECCeEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDN-FE----------ELSP------------TIGVDFKVKY-V-----DVGGKKLKL   64 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~-~~----------~~~~------------~~~~~~~~~~-~-----~~~~~~~~~   64 (210)
                      ...++++|++||||||++..|.... ..          +.+.            ..+..+.... .     .+....+.+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            3568899999999999998886321 00          0000            0000010000 0     001124567


Q ss_pred             EEEeCCCcccccc----chhhccc-----CccEEEEEEeCCCcc-cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329           65 AIWDTAGQERFRT----LTSSYYR-----GAQGIIMVYDVTRRD-TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        65 ~l~D~~g~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~  134 (210)
                      .++||+|......    .+..++.     ...-.++|+|++-.. ......    ..+..    .+. -=+|.||.|...
T Consensus       303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~----~~f~~----~~~-~glIlTKLDEt~  373 (432)
T PRK12724        303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL----KAYES----LNY-RRILLTKLDEAD  373 (432)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH----HHhcC----CCC-CEEEEEcccCCC
Confidence            8999999643221    1222221     134578899987653 222222    22211    122 258899999642


Q ss_pred             CceecHHHHHHHHHHhCCcEEEEcc
Q 028329          135 ERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~sa  159 (210)
                      .    .-.+...+...+.|+..++.
T Consensus       374 ~----~G~il~i~~~~~lPI~ylt~  394 (432)
T PRK12724        374 F----LGSFLELADTYSKSFTYLSV  394 (432)
T ss_pred             C----ccHHHHHHHHHCCCEEEEec
Confidence            2    23356667777888666654

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.45  E-value=0.00049  Score=39.30  Aligned_cols=44  Identities=23%  Similarity=0.219  Sum_probs=26.4

Q ss_pred             CccEEEEEEeCCCc--ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCC
Q 028329           85 GAQGIIMVYDVTRR--DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD  131 (210)
Q Consensus        85 ~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D  131 (210)
                      -.++++|++|++..  .+.+.-.. ++..++.  ...+.|+++|.||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~-L~~~ik~--~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLS-LFKEIKP--LFPNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHH-HHHHHHH--HTTTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHH-HHHHHHH--HcCCCCEEEEEeccC
Confidence            46899999999854  45555555 4555544  245899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.43  E-value=0.00011  Score=50.77  Aligned_cols=20  Identities=30%  Similarity=0.599  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028329           17 LLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~   36 (210)
                      |+++|+||||||||++.|..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999974

...

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.43  E-value=0.0016  Score=56.76  Aligned_cols=137  Identities=14%  Similarity=0.134  Sum_probs=71.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCC-C-C--CceeeeE---------------EEEEE-E-----------CCeEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEEL-S-P--TIGVDFK---------------VKYVD-V-----------GGKKLK   63 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~-~-~--~~~~~~~---------------~~~~~-~-----------~~~~~~   63 (210)
                      --|+|+|++||||||.+..|........ . .  -...+.+               ...+. .           ......
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D  265 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH  265 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence            4688999999999999988874321100 0 0  0000000               00000 0           112346


Q ss_pred             EEEEeCCCccccccc----hhhc--ccCccEEEEEEeCCCc-ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329           64 LAIWDTAGQERFRTL----TSSY--YRGAQGIIMVYDVTRR-DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        64 ~~l~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~  136 (210)
                      +.|+||+|.......    ....  ....+-.++|+|++-. +.+..+...|....     ..+ +-=+|+||.|.... 
T Consensus       266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~-----~~~-i~glIlTKLDEt~~-  338 (767)
T PRK14723        266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGA-----GED-VDGCIITKLDEATH-  338 (767)
T ss_pred             EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcc-----cCC-CCEEEEeccCCCCC-
Confidence            899999994432221    1111  2235667899998743 33333322111100     001 22488999996432 


Q ss_pred             eecHHHHHHHHHHhCCcEEEEccCC
Q 028329          137 VVTKKEGINFAREYGCLFIECSAKT  161 (210)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~sa~~  161 (210)
                         .-.+..+....+.|+.+++.=.
T Consensus       339 ---~G~iL~i~~~~~lPI~yit~GQ  360 (767)
T PRK14723        339 ---LGPALDTVIRHRLPVHYVSTGQ  360 (767)
T ss_pred             ---ccHHHHHHHHHCCCeEEEecCC
Confidence               3345666777888876666433

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.40  E-value=0.0025  Score=51.56  Aligned_cols=87  Identities=13%  Similarity=0.110  Sum_probs=48.3

Q ss_pred             EEEEEEEeCCCcccccc----chhhcccC--cc-EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329           61 KLKLAIWDTAGQERFRT----LTSSYYRG--AQ-GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~----~~~~~~~~--~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~  133 (210)
                      .+.+.++|++|......    ....++..  .+ -.++|+|++....  .+.    ..+..+...  -+-=+|+||.|..
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~--~~~----~~~~~~~~~--~~~~~I~TKlDet  325 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS--DVK----EIFHQFSPF--SYKTVIFTKLDET  325 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHH--HHH----HHHHHhcCC--CCCEEEEEeccCC
Confidence            45789999999654332    11222222  23 5789999886522  222    222222111  1225889999964


Q ss_pred             CCceecHHHHHHHHHHhCCcEEEEcc
Q 028329          134 SERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~sa  159 (210)
                      ..    .-.+..++...+.|+..++.
T Consensus       326 ~~----~G~~l~~~~~~~~Pi~yit~  347 (388)
T PRK12723        326 TC----VGNLISLIYEMRKEVSYVTD  347 (388)
T ss_pred             Cc----chHHHHHHHHHCCCEEEEeC
Confidence            32    23456666777888666554

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.38  E-value=7.9e-05  Score=53.27  Aligned_cols=48  Identities=25%  Similarity=0.314  Sum_probs=30.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLK   63 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   63 (210)
                      .=+++.|++|||||||++.|.... .-......+|........+|..+.
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY~   52 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDYF   52 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCceeE
Confidence            447888999999999999999765 211113333334444445555443

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.37  E-value=0.0024  Score=49.15  Aligned_cols=86  Identities=12%  Similarity=0.111  Sum_probs=48.9

Q ss_pred             EEEEEEEeCCCccccccc----hhhcc--cCccEEEEEEeCCCc-ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329           61 KLKLAIWDTAGQERFRTL----TSSYY--RGAQGIIMVYDVTRR-DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~  133 (210)
                      .+.+.++|++|.......    +...+  ...+-+++|+|++.. +.....    ...+..    .+ +-=+|.||.|..
T Consensus       154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~----~~~f~~----~~-~~~~I~TKlDet  224 (270)
T PRK06731        154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI----ITNFKD----IH-IDGIVFTKFDET  224 (270)
T ss_pred             CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH----HHHhCC----CC-CCEEEEEeecCC
Confidence            467899999996543221    22222  245678999998643 222222    222221    12 225889999965


Q ss_pred             CCceecHHHHHHHHHHhCCcEEEEcc
Q 028329          134 SERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~sa  159 (210)
                      ..    .-.+..++...+.|+..++.
T Consensus       225 ~~----~G~~l~~~~~~~~Pi~~it~  246 (270)
T PRK06731        225 AS----SGELLKIPAVSSAPIVLMTD  246 (270)
T ss_pred             CC----ccHHHHHHHHHCcCEEEEeC
Confidence            32    33456667777888666654

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.36  E-value=0.00082  Score=43.79  Aligned_cols=79  Identities=15%  Similarity=0.199  Sum_probs=47.1

Q ss_pred             EEEEc-CCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeC
Q 028329           17 LLMIG-DSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   95 (210)
Q Consensus        17 i~v~G-~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (210)
                      |.+.| ..|+||||+...+...-.....+...       +..+. .+.+.++|+|+....  .....+..+|.++++.+.
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~-------~d~d~-~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~   71 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLL-------IDLDP-QYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP   71 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEE-------EeCCC-CCCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC
Confidence            55666 56899999987765322111111111       11121 167899999986432  233667789999999987


Q ss_pred             CCcccHHHHHH
Q 028329           96 TRRDTFTNLSD  106 (210)
Q Consensus        96 ~~~~s~~~~~~  106 (210)
                      +. .++.....
T Consensus        72 ~~-~s~~~~~~   81 (104)
T cd02042          72 SP-LDLDGLEK   81 (104)
T ss_pred             CH-HHHHHHHH
Confidence            64 44555544

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.35  E-value=0.00023  Score=41.67  Aligned_cols=21  Identities=38%  Similarity=0.578  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..+|.|+.|+|||||+..+.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999988754

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.34  E-value=0.0016  Score=53.99  Aligned_cols=89  Identities=9%  Similarity=0.067  Sum_probs=44.2

Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  167 (210)
                      .+|+|=|+=+..-...... +.+.+..+......|+|+|++-+-...-...+......+-...++..+..+.-...-+..
T Consensus       196 ~liLveDLPn~~~~d~~~~-f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK  274 (634)
T KOG1970|consen  196 KLILVEDLPNQFYRDDSET-FREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKK  274 (634)
T ss_pred             eEEEeeccchhhhhhhHHH-HHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHH
Confidence            3466666644333332222 555555666677889999887665432221111112222233455555555544444555


Q ss_pred             HHHHHHHHHH
Q 028329          168 CFEELVLKIL  177 (210)
Q Consensus       168 ~~~~l~~~~~  177 (210)
                      .+..++....
T Consensus       275 ~L~ric~~e~  284 (634)
T KOG1970|consen  275 FLKRICRIEA  284 (634)
T ss_pred             HHHHHHHHhc
Confidence            5555544443

>PRK04195 replication factor C large subunit; Provisional

Probab=97.33  E-value=0.0028  Score=53.08  Aligned_cols=25  Identities=40%  Similarity=0.573  Sum_probs=21.3

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .-.+++.|++|+||||+++.+....
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            3568999999999999999998643

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.33  E-value=0.00015  Score=51.51  Aligned_cols=22  Identities=18%  Similarity=0.576  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999855

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.31  E-value=0.00023  Score=48.90  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++|+|++|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            57899999999999999999764

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.30  E-value=0.00027  Score=52.88  Aligned_cols=24  Identities=33%  Similarity=0.419  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~   39 (210)
                      -|.++|++|||||||++.+.+-..
T Consensus        31 fvsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            378999999999999999987654

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.30  E-value=0.0023  Score=51.06  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .++.|.-|||||||+++++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            567799999999999999753

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.30  E-value=0.00026  Score=42.65  Aligned_cols=21  Identities=29%  Similarity=0.537  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~   37 (210)
                      |.+.|++|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999999854

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.27  E-value=0.00036  Score=51.17  Aligned_cols=25  Identities=36%  Similarity=0.448  Sum_probs=21.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~   39 (210)
                      =.++++|++|||||||++.+.+-..
T Consensus        29 evv~iiGpSGSGKSTlLRclN~LE~   53 (240)
T COG1126          29 EVVVIIGPSGSGKSTLLRCLNGLEE   53 (240)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCcC
Confidence            3578999999999999999986654

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.27  E-value=0.0025  Score=53.54  Aligned_cols=23  Identities=30%  Similarity=0.514  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      -+++.|++||||||.++.|+...
T Consensus        47 iLlLtGP~G~GKtttv~~La~el   69 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAKEL   69 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            45668999999999999998553

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.24  E-value=0.00031  Score=52.23  Aligned_cols=25  Identities=32%  Similarity=0.384  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFE   40 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~   40 (210)
                      -++++|++|||||||++-+.+-.-+
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld~p   57 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLDKP   57 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcccCC
Confidence            4789999999999999999876543

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.23  E-value=0.0077  Score=44.88  Aligned_cols=49  Identities=22%  Similarity=0.234  Sum_probs=31.9

Q ss_pred             hhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCC-CcEEEEEeCCCCC
Q 028329           79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD-CIKLLVGNKVDKE  133 (210)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~piivv~nK~D~~  133 (210)
                      -+...+++|.+++|+|.+. .++.....     +........ .++.+|+||.|-.
T Consensus       149 gRg~~~~vD~vivVvDpS~-~sl~taer-----i~~L~~elg~k~i~~V~NKv~e~  198 (255)
T COG3640         149 GRGTIEGVDLVIVVVDPSY-KSLRTAER-----IKELAEELGIKRIFVVLNKVDEE  198 (255)
T ss_pred             ccccccCCCEEEEEeCCcH-HHHHHHHH-----HHHHHHHhCCceEEEEEeeccch
Confidence            3445678999999999875 33433332     222222344 7889999999953

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.22  E-value=0.039  Score=39.19  Aligned_cols=144  Identities=13%  Similarity=0.083  Sum_probs=97.4

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      +....-.|+++|..+.++..|..++...+-.         +. ..+..-.        -+|-..+.....    ...|.+
T Consensus        11 p~ln~atiLLVg~e~~~~~~LA~a~l~~~~~---------~~-l~Vh~a~--------sLPLp~e~~~lR----prIDlI   68 (176)
T PF11111_consen   11 PELNTATILLVGTEEALLQQLAEAMLEEDKE---------FK-LKVHLAK--------SLPLPSENNNLR----PRIDLI   68 (176)
T ss_pred             CCcceeEEEEecccHHHHHHHHHHHHhhccc---------ee-EEEEEec--------cCCCcccccCCC----ceeEEE
Confidence            3445789999999999999999999953211         11 1111100        111111112122    238999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  169 (210)
                      ++++|.....|+..+.. =+..+...--..  -+.++++-........+...++.+++..+.++++.+...+..+...+-
T Consensus        69 VFvinl~sk~SL~~ve~-SL~~vd~~fflG--KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lA  145 (176)
T PF11111_consen   69 VFVINLHSKYSLQSVEA-SLSHVDPSFFLG--KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLA  145 (176)
T ss_pred             EEEEecCCcccHHHHHH-HHhhCChhhhcc--ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHH
Confidence            99999999999988877 444443211111  245666666666777888999999999999999999999998888877


Q ss_pred             HHHHHHHHc
Q 028329          170 EELVLKILD  178 (210)
Q Consensus       170 ~~l~~~~~~  178 (210)
                      +.|++.+.-
T Consensus       146 qRLL~~lqi  154 (176)
T PF11111_consen  146 QRLLRMLQI  154 (176)
T ss_pred             HHHHHHHHH
Confidence            777776643

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.17  E-value=0.00036  Score=47.31  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      |++.|++|+|||++++.+...-
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999998653

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.17  E-value=0.0014  Score=44.72  Aligned_cols=23  Identities=30%  Similarity=0.524  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      -|++.|+.|+|||||++.+...-
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58899999999999999998653

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK06217 hypothetical protein; Validated

Probab=97.16  E-value=0.00036  Score=50.57  Aligned_cols=23  Identities=22%  Similarity=0.478  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .+|+|+|.+|||||||.+.|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999754

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.15  E-value=0.00036  Score=47.12  Aligned_cols=21  Identities=19%  Similarity=0.365  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~   37 (210)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998754

...

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.15  E-value=0.00047  Score=47.53  Aligned_cols=21  Identities=43%  Similarity=0.738  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~   37 (210)
                      |+++|++|||||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            688999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.13  E-value=0.00042  Score=47.96  Aligned_cols=22  Identities=18%  Similarity=0.472  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .|.|+|++|||||||++.|...
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998754

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.13  E-value=0.00042  Score=50.34  Aligned_cols=23  Identities=35%  Similarity=0.609  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .|+|+|++|||||||++.|.+..
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58899999999999999997543

>PRK03839 putative kinase; Provisional

Probab=97.12  E-value=0.00044  Score=49.92  Aligned_cols=22  Identities=23%  Similarity=0.456  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      +|+++|.|||||||+.+.|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998753

>PRK01889 GTPase RsgA; Reviewed

Probab=97.12  E-value=0.00059  Score=54.74  Aligned_cols=25  Identities=32%  Similarity=0.594  Sum_probs=21.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~   39 (210)
                      -+++++|.+|+|||||++.|.+...
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~  220 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV  220 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc
Confidence            4789999999999999999987543

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.11  E-value=0.00062  Score=49.08  Aligned_cols=22  Identities=36%  Similarity=0.655  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .|+++|++|||||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4789999999999999999864

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.11  E-value=0.0016  Score=42.77  Aligned_cols=99  Identities=14%  Similarity=0.105  Sum_probs=54.0

Q ss_pred             cCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcc
Q 028329           21 GDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD   99 (210)
Q Consensus        21 G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   99 (210)
                      +..|+||||+...|...-... .......+..     .... ..+.++|+|+...  ......+..+|.++++.+.+. .
T Consensus         7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d-----~~~~-~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~-~   77 (106)
T cd03111           7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLD-----LQFG-DDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDL-P   77 (106)
T ss_pred             CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECC-----CCCC-CCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCCh-H
Confidence            556799999877664322111 1111111111     1111 1688899998543  233456778999999998764 4


Q ss_pred             cHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028329          100 TFTNLSDVWAKEIDLYSTNQDCIKLLVGNK  129 (210)
Q Consensus       100 s~~~~~~~~~~~~~~~~~~~~~piivv~nK  129 (210)
                      ++..... +...++.........+.+|+|+
T Consensus        78 s~~~~~~-~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          78 SIRNAKR-LLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHH-HHHHHHHcCCCCcCceEEEecC
Confidence            4555554 5555544221213355677764

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.11  E-value=0.0005  Score=46.74  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=22.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFE   40 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~   40 (210)
                      -.++++|++|+||||++..+...-..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            36899999999999999999865543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.09  E-value=0.00042  Score=49.95  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .++|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK14530 adenylate kinase; Provisional

Probab=97.09  E-value=0.00046  Score=51.34  Aligned_cols=22  Identities=23%  Similarity=0.520  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .+|+|+|+|||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999863

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.08  E-value=0.00045  Score=51.98  Aligned_cols=27  Identities=33%  Similarity=0.603  Sum_probs=23.4

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .+..++++|+|.+|||||+|+..|+..
T Consensus        10 ~~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   10 LKDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHh
Confidence            356799999999999999999988754

This is thought to be an ATPase involved in viral DNA packaging [].

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.07  E-value=0.00045  Score=54.52  Aligned_cols=22  Identities=36%  Similarity=0.617  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      ++++|++|||||||++.+.+-.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6788999999999999998654

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.07  E-value=0.00052  Score=44.95  Aligned_cols=21  Identities=43%  Similarity=0.790  Sum_probs=18.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHh
Q 028329           15 FKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~   35 (210)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            457999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK13949 shikimate kinase; Provisional

Probab=97.05  E-value=0.00056  Score=48.92  Aligned_cols=22  Identities=23%  Similarity=0.591  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      +|+++|++||||||+.+.|...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988743

>TIGR00235 udk uridine kinase

Probab=97.05  E-value=0.00066  Score=50.22  Aligned_cols=26  Identities=19%  Similarity=0.183  Sum_probs=22.1

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      +...-|+|.|++|||||||++.|.+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            34467999999999999999999853

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.02  E-value=0.00082  Score=48.44  Aligned_cols=25  Identities=16%  Similarity=0.311  Sum_probs=21.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~   39 (210)
                      =.++++|++|+|||||++.+.+...
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~   50 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQLI   50 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCC
Confidence            4688999999999999999997643

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.02  E-value=0.00064  Score=50.35  Aligned_cols=25  Identities=20%  Similarity=0.320  Sum_probs=22.2

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ..+.|+|.|++|||||||++.|...
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            5688999999999999999998753

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.02  E-value=0.00056  Score=51.93  Aligned_cols=21  Identities=33%  Similarity=0.515  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -++++|+.|||||||++.+.+
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            367889999999999999975

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.02  E-value=0.00053  Score=50.31  Aligned_cols=21  Identities=24%  Similarity=0.428  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~   37 (210)
                      |+|.|++|||||||++.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999754

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.01  E-value=0.0061  Score=47.72  Aligned_cols=86  Identities=16%  Similarity=0.225  Sum_probs=49.7

Q ss_pred             EEEEEEEeCCCccccccc-------hhhcccCcc-----EEEEEEeCCCc-ccHHHHHHHHHHHHhhhccCCCCcEEEEE
Q 028329           61 KLKLAIWDTAGQERFRTL-------TSSYYRGAQ-----GIIMVYDVTRR-DTFTNLSDVWAKEIDLYSTNQDCIKLLVG  127 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~-------~~~~~~~~d-----~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~piivv~  127 (210)
                      .+.+.|+||+|.......       ....+...+     =+++++|++-. +++.+.+. |.+.+..        -=+|.
T Consensus       221 ~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~-F~eav~l--------~GiIl  291 (340)
T COG0552         221 GIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKI-FNEAVGL--------DGIIL  291 (340)
T ss_pred             CCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHH-HHHhcCC--------ceEEE
Confidence            357899999994332221       122233333     38888898765 44555544 5554432        14889


Q ss_pred             eCCCCCCCceecHHHHHHHHHHhCCcEEEEcc
Q 028329          128 NKVDKESERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       128 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  159 (210)
                      ||.|....--+    +..++..+++|+.++-.
T Consensus       292 TKlDgtAKGG~----il~I~~~l~~PI~fiGv  319 (340)
T COG0552         292 TKLDGTAKGGI----ILSIAYELGIPIKFIGV  319 (340)
T ss_pred             EecccCCCcce----eeeHHHHhCCCEEEEeC
Confidence            99996433322    23456677888666543

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.00  E-value=0.0093  Score=42.89  Aligned_cols=86  Identities=19%  Similarity=0.132  Sum_probs=58.2

Q ss_pred             eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec
Q 028329           60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT  139 (210)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~  139 (210)
                      ..+.+.++|+|+...  ......+..+|.+++++..+. .+...... +.+.++.    .+.|+.+|+|+.|....   .
T Consensus        91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~-~~~~l~~----~~~~~~vV~N~~~~~~~---~  159 (179)
T cd03110          91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLER-AVELVRH----FGIPVGVVINKYDLNDE---I  159 (179)
T ss_pred             cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHH-HHHHHHH----cCCCEEEEEeCCCCCcc---h
Confidence            456889999997533  233455678999999999884 35555555 4555543    24677899999996432   3


Q ss_pred             HHHHHHHHHHhCCcEEE
Q 028329          140 KKEGINFAREYGCLFIE  156 (210)
Q Consensus       140 ~~~~~~~~~~~~~~~~~  156 (210)
                      .+++..+....+++++.
T Consensus       160 ~~~~~~~~~~~~~~vl~  176 (179)
T cd03110         160 AEEIEDYCEEEGIPILG  176 (179)
T ss_pred             HHHHHHHHHHcCCCeEE
Confidence            44566777777887654

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.99  E-value=0.00063  Score=46.86  Aligned_cols=22  Identities=27%  Similarity=0.566  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .|+++|++|+|||+|++.+...
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            3799999999999999988743

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.99  E-value=0.00068  Score=48.81  Aligned_cols=22  Identities=32%  Similarity=0.321  Sum_probs=19.6

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHh
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~   35 (210)
                      --.++++|++|+|||||++.+.
T Consensus        21 G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          21 NVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            3578999999999999999886

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.99  E-value=0.00062  Score=49.34  Aligned_cols=21  Identities=19%  Similarity=0.392  Sum_probs=19.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHh
Q 028329           15 FKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~   35 (210)
                      ..|+++|++||||||+++.|.
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            368899999999999999997

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.99  E-value=0.00069  Score=50.46  Aligned_cols=23  Identities=35%  Similarity=0.476  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|+|||||++.+.+..
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Confidence            67899999999999999999754

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.98  E-value=0.00029  Score=52.90  Aligned_cols=158  Identities=17%  Similarity=0.227  Sum_probs=85.9

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhcccC----cc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLTSSYYRG----AQ   87 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~----~d   87 (210)
                      ....|++.|..+.  ||+|++.....-....++...++..-.-.. ++..-...+|+++|......+..-.++.    .=
T Consensus        44 ~E~~I~~~Gn~~~--tt~I~~~FdR~e~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~~  121 (363)
T KOG3929|consen   44 FEFFIGSKGNGGK--TTIILRCFDRDEPPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRTF  121 (363)
T ss_pred             ceeEEEEecCCce--eEeehhhcCcccCCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhhh
Confidence            3577888886654  999999887665555554444443222222 2234456899999876655544433332    23


Q ss_pred             EEEEEEeCCCcccH----HHHHHH------------------HHHHHhhh--------------ccCCCCcEEEEEeCCC
Q 028329           88 GIIMVYDVTRRDTF----TNLSDV------------------WAKEIDLY--------------STNQDCIKLLVGNKVD  131 (210)
Q Consensus        88 ~~i~v~d~~~~~s~----~~~~~~------------------~~~~~~~~--------------~~~~~~piivv~nK~D  131 (210)
                      .+|++.|.++++.+    +...+-                  +.+.++..              ++.-++|+++|+.|.|
T Consensus       122 slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsKYD  201 (363)
T KOG3929|consen  122 SLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSKYD  201 (363)
T ss_pred             hheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccchh
Confidence            67899999987532    111110                  11111111              2234789999999999


Q ss_pred             CCCCceecHHH-------HHHHHHHhCCcEEEEccCCCCCHHHHHHHHHH
Q 028329          132 KESERVVTKKE-------GINFAREYGCLFIECSAKTRVNVQQCFEELVL  174 (210)
Q Consensus       132 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~  174 (210)
                      .-  .....+.       .+..+..+|......|++...-.+.+-+.+..
T Consensus       202 vF--q~FesekRkH~C~~LRf~Ah~yGaaLlmfSskMe~l~K~~r~~i~H  249 (363)
T KOG3929|consen  202 VF--QDFESEKRKHICKTLRFVAHYYGAALLMFSSKMEALLKKIRGVINH  249 (363)
T ss_pred             hh--ccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhhHHH
Confidence            63  2222222       34444555666666777744433333333333

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.98  E-value=0.0017  Score=51.69  Aligned_cols=54  Identities=17%  Similarity=0.251  Sum_probs=33.7

Q ss_pred             eEEEEEEEeCCCccccccch-hh-----cccCccEEEEEEeCCCcccHHHHHHHHHHHHh
Q 028329           60 KKLKLAIWDTAGQERFRTLT-SS-----YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEID  113 (210)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~-~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  113 (210)
                      ..+.+.|.||.|........ ..     -.-+.|-+|+|+|++-...-+.....+.+.+.
T Consensus       182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vd  241 (483)
T KOG0780|consen  182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVD  241 (483)
T ss_pred             cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhc
Confidence            34689999999954433221 11     12357999999999876655444443555554

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.97  E-value=0.00084  Score=48.01  Aligned_cols=25  Identities=28%  Similarity=0.343  Sum_probs=21.4

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ...-+.|+|.+|||||||++++...
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHH
Confidence            3457899999999999999999854

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=96.97  E-value=0.0099  Score=42.55  Aligned_cols=84  Identities=7%  Similarity=-0.027  Sum_probs=49.1

Q ss_pred             EEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHH
Q 028329           63 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKE  142 (210)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~  142 (210)
                      .+.++|+|+....  .....+..+|.++++++.+.. ++..... +.+.+..   .......++.|+.+.....  ..+.
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~-~~~~~~~---~~~~~~~iv~N~~~~~~~~--~~~~  134 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADR-VKGLLEA---LGIKVVGVIVNRVRPDMVE--GGDM  134 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHH-HHHHHHH---cCCceEEEEEeCCcccccc--hhhH
Confidence            6889999975432  244556789999999988753 3444444 4444443   1223467899999864221  1112


Q ss_pred             HHHHHHHhCCcEE
Q 028329          143 GINFAREYGCLFI  155 (210)
Q Consensus       143 ~~~~~~~~~~~~~  155 (210)
                      ...+....+.+++
T Consensus       135 ~~~~~~~~~~~v~  147 (179)
T cd02036         135 VEDIEEILGVPLL  147 (179)
T ss_pred             HHHHHHHhCCCEE
Confidence            2334444566654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.95  E-value=0.00077  Score=49.94  Aligned_cols=23  Identities=35%  Similarity=0.488  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|+|||||++.+.+..
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999999754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.95  E-value=0.00077  Score=49.73  Aligned_cols=24  Identities=21%  Similarity=0.285  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      =.++++|++|+|||||++.+.+..
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          27 EIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            368899999999999999999754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.95  E-value=0.00077  Score=50.13  Aligned_cols=23  Identities=30%  Similarity=0.533  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|+|||||++.+.+..
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            67899999999999999999754

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.94  E-value=0.00073  Score=50.22  Aligned_cols=21  Identities=48%  Similarity=0.713  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .|+++|++|+|||||++.+.+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999987

>PRK08233 hypothetical protein; Provisional

Probab=96.94  E-value=0.00088  Score=48.26  Aligned_cols=23  Identities=26%  Similarity=0.265  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      +-|+|.|.+|||||||.+.|...
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            67888999999999999999853

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.93  E-value=0.00082  Score=48.86  Aligned_cols=24  Identities=29%  Similarity=0.456  Sum_probs=21.2

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .-.++++|++|||||||++.|++.
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            456899999999999999999864

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.93  E-value=0.00073  Score=50.06  Aligned_cols=23  Identities=22%  Similarity=0.429  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|+|||||++.+.+..
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999999753

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.93  E-value=0.00098  Score=52.92  Aligned_cols=24  Identities=29%  Similarity=0.463  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSDNFE   40 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~~~~   40 (210)
                      +.++|++||||||+++.+.+-..+
T Consensus        34 ~~lLGPSGcGKTTlLR~IAGfe~p   57 (352)
T COG3842          34 VTLLGPSGCGKTTLLRMIAGFEQP   57 (352)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCC
Confidence            678999999999999999875543

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.93  E-value=0.00082  Score=50.70  Aligned_cols=23  Identities=43%  Similarity=0.472  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|+|||||++.+.+..
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          28 ILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999754

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=96.92  E-value=0.00067  Score=50.70  Aligned_cols=21  Identities=24%  Similarity=0.271  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~   37 (210)
                      |.+.|++|||||||++.|.+.
T Consensus         2 igI~G~sGSGKTTla~~L~~~   22 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQAL   22 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHH
Confidence            689999999999999999853

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.92  E-value=0.00087  Score=48.83  Aligned_cols=23  Identities=39%  Similarity=0.606  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|+|||||++.+.+..
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999998754

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK14532 adenylate kinase; Provisional

Probab=96.92  E-value=0.00084  Score=48.79  Aligned_cols=21  Identities=19%  Similarity=0.431  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      +|+++|+|||||||+..+|..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999974

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.92  E-value=0.00086  Score=49.79  Aligned_cols=23  Identities=35%  Similarity=0.486  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|+|||||++.+.+..
T Consensus        30 ~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        30 FLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999998754

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.92  E-value=0.00087  Score=49.44  Aligned_cols=23  Identities=39%  Similarity=0.470  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|+|||||++.+.+..
T Consensus        26 ~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        26 MYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58899999999999999999754

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.92  E-value=0.00086  Score=49.75  Aligned_cols=23  Identities=35%  Similarity=0.599  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|+|||||++.+.+..
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          29 FVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999999753

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.91  E-value=0.0011  Score=47.59  Aligned_cols=25  Identities=32%  Similarity=0.365  Sum_probs=21.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~   39 (210)
                      =.+.|+|++|+|||||+|-+.+-..
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAGF~~   50 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAGFET   50 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHhccC
Confidence            4689999999999999999986543

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.91  E-value=0.0027  Score=46.63  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      |+|.|++||||||+++.+....
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999987543

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=96.91  E-value=0.00087  Score=48.26  Aligned_cols=23  Identities=35%  Similarity=0.551  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~~~   39 (210)
                      +.++|++|+|||||++.++...-
T Consensus        31 ~fl~GpSGAGKSTllkLi~~~e~   53 (223)
T COG2884          31 VFLTGPSGAGKSTLLKLIYGEER   53 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHhhhc
Confidence            67889999999999999986543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	210
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		7e-55
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		3e-47
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		5e-46
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		2e-45
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		2e-45
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		3e-45
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		4e-45
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		5e-45
4fmc_B	171	Espg-Rab1 Complex Length = 171		5e-45
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		4e-44
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		5e-44
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		1e-43
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		2e-43
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		3e-42
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		3e-42
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		4e-42
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		5e-42
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		8e-42
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		1e-41
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		1e-41
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		1e-41
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-41
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		2e-41
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-41
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		2e-41
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		3e-41
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		5e-41
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		5e-41
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		8e-41
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		1e-40
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		1e-39
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		2e-39
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		2e-37
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		8e-37
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		1e-36
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		4e-36
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		5e-36
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		9e-36
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		1e-35
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		1e-35
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		1e-35
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		1e-35
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		2e-35
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		3e-35
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		3e-35
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		3e-35
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		4e-35
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		3e-34
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		9e-34
4fmc_F	117	Espg-Rab1 Complex Length = 117		2e-33
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		2e-31
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		3e-31
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		1e-30
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		2e-30
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		7e-30
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		1e-29
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		2e-29
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		2e-29
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		4e-29
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		6e-29
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		6e-29
2efc_B	181	Ara7-GdpATVPS9A Length = 181		7e-29
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		8e-29
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		8e-29
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		9e-29
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		9e-29
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		1e-28
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		1e-28
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		1e-28
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		2e-28
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		2e-28
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		2e-28
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		2e-28
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-28
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		3e-28
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-28
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		7e-28
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		7e-28
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		8e-28
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		8e-28
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		4e-27
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		5e-27
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		7e-27
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		8e-27
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		9e-27
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		9e-27
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		1e-26
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		1e-26
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		2e-26
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		3e-26
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		3e-26
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		3e-26
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		4e-26
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		6e-26
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		6e-26
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		1e-25
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-25
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		1e-25
1vg1_A	185	Gdp-bound Rab7 Length = 185		2e-25
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		2e-25
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		7e-25
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		7e-25
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		1e-24
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		2e-23
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		2e-23
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		3e-23
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		3e-23
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		3e-23
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		6e-23
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		2e-22
1byu_A	216	Canine Gdp-Ran Length = 216		8e-22
2bku_A	177	Kap95p:rangtp Complex Length = 177		1e-21
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		2e-21
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		7e-21
1s1c_A	183	Crystal Structure Of The Complex Between The Human		9e-21
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		9e-21
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		1e-20
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		1e-20
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		1e-20
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		1e-20
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		1e-20
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		1e-20
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		1e-20
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		1e-20
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		1e-20
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		2e-20
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		2e-20
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-20
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-20
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		3e-20
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		4e-20
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		4e-20
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		5e-20
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		7e-20
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		7e-20
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		9e-20
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-19
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-19
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		1e-19
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		1e-19
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		1e-19
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		1e-19
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		1e-19
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		1e-19
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-19
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		2e-19
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		3e-19
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		3e-19
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		3e-19
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		4e-19
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		5e-19
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		8e-19
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		9e-19
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		1e-18
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-18
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-18
3icq_B	171	Karyopherin Nuclear State Length = 171		2e-18
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		2e-18
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		2e-18
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		4e-18
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		1e-17
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		1e-17
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		2e-17
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		2e-17
1mh1_A	186	Small G-Protein Length = 186		3e-17
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		3e-17
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		3e-17
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		3e-17
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		4e-17
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		4e-17
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		4e-17
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		4e-17
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		4e-17
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		4e-17
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		4e-17
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		4e-17
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		4e-17
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		4e-17
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		4e-17
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		5e-17
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		5e-17
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		6e-17
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		6e-17
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		6e-17
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		6e-17
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		7e-17
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		9e-17
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		9e-17
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		1e-16
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		1e-16
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		1e-16
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		1e-16
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		1e-16
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		1e-16
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		1e-16
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		1e-16
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		1e-16
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		2e-16
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		2e-16
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-16
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-16
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		2e-16
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		3e-16
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		3e-16
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		3e-16
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		3e-16
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		3e-16
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		3e-16
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		4e-16
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		4e-16
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		4e-16
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		5e-16
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		5e-16
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		6e-16
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		6e-16
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		6e-16
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		6e-16
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		7e-16
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		7e-16
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		8e-16
4q21_A	189	Molecular Switch For Signal Transduction: Structura		8e-16
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		9e-16
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		1e-15
2kb0_A	178	Cdc42(T35a) Length = 178		1e-15
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		1e-15
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-15
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		2e-15
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		2e-15
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		2e-15
6q21_A	171	Molecular Switch For Signal Transduction: Structura		2e-15
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		2e-15
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		2e-15
1wq1_R	166	Ras-Rasgap Complex Length = 166		2e-15
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-15
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-15
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		2e-15
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-15
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		2e-15
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		3e-15
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		3e-15
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		3e-15
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		3e-15
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		3e-15
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		4e-15
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		4e-15
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		5e-15
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		5e-15
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		6e-15
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		6e-15
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		6e-15
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		6e-15
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		7e-15
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		7e-15
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		7e-15
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		7e-15
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		8e-15
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		1e-14
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		1e-14
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		2e-14
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-14
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		2e-14
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		2e-14
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		2e-14
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		3e-14
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		3e-14
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		4e-14
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		6e-14
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		7e-14
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		8e-14
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		1e-13
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		3e-13
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		4e-13
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		5e-13
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		5e-13
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		1e-12
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		8e-11
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		8e-11
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		9e-11
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		9e-11
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		1e-10
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		3e-10
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		5e-10
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		6e-10
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		6e-10
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		1e-09
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		1e-09
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		2e-09
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		2e-09
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		3e-09
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		3e-09
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		4e-09
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		5e-09
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		5e-09
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		5e-09
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		5e-09
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		6e-09
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		7e-09
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		1e-08
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		2e-08
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		2e-08
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		2e-08
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		2e-08
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		2e-08
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		2e-08
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		3e-08
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		1e-07
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		1e-07
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		1e-07
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		1e-07
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		1e-07
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		1e-07
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		1e-07
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		2e-07
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		2e-07
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		2e-07
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		2e-07
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		2e-07
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		2e-07
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		4e-07
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		4e-07
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		4e-07
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		5e-07
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		6e-07
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		6e-07
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		8e-07
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-06
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		1e-06
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-06
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		2e-06
3bh6_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		3e-06
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		4e-06
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		5e-06
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		1e-05
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		2e-05
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		2e-04
1upt_A	171	Structure Of A Complex Of The Golgin-245 Grip Domai		2e-04
2h57_A	190	Crystal Structure Of Human Adp-Ribosylation Factor-		3e-04

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  209 bits (533), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 110/169 (65%), Positives = 128/169 (75%), Gaps = 3/169 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D +  LVGNK+DKE
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNXLVGNKIDKE 134
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           + R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L
Sbjct: 135 N-REVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPGL 182

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  184 bits (467), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 119/168 (70%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFKLL+IGDSGVGKS LLL F  D + +    TIGVDFK++ + +  K +KL IWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWD 64
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFRT+TSSYYRGA GII+VYDVT RD+F N+   W +EID Y+  ++  KLLVGN
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQ-WIQEIDRYAM-ENVNKLLVGN 122
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D  S+RVVT  EG   A  +G  FIE SAK   NV+Q F  +  +I
Sbjct: 123 KCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  180 bits (456), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 94/177 (53%), Positives = 123/177 (69%), Gaps = 3/177 (1%)
Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGG 59
           + S S+   E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ G
Sbjct: 3   LGSMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG 62
Query: 60  KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ 119
           K +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ +
Sbjct: 63  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-E 120
Query: 120 DCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           +  KLLVGNK D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I
Sbjct: 121 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  178 bits (452), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/177 (52%), Positives = 123/177 (69%), Gaps = 3/177 (1%)
Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGG 59
           + S S+   E+DYLFKLL+IGDSGVGK+ LLL F  D + E    TIGVDFK++ +++ G
Sbjct: 3   LGSMSSMNPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDG 62
Query: 60  KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ 119
           K +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ +
Sbjct: 63  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-E 120
Query: 120 DCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           +  KLLVGNK D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I
Sbjct: 121 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  177 bits (450), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/168 (54%), Positives = 119/168 (70%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +KL IWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFRT+TSSYYRGA GII+VYDVT ++++ N+   W +EID Y++ ++  KLLVGN
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYAS-ENVNKLLVGN 122
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I
Sbjct: 123 KSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  177 bits (450), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 91/168 (54%), Positives = 119/168 (70%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +KL IWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFRT+TSSYYRGA GII+VYDVT ++++ N+   W +EID Y++ ++  KLLVGN
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYAS-ENVNKLLVGN 122
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I
Sbjct: 123 KSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  177 bits (448), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 93/173 (53%), Positives = 120/173 (69%), Gaps = 3/173 (1%)
Query: 5   SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLK 63
           S+   E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +K
Sbjct: 24  SSXNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 83
Query: 64  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
           L IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  K
Sbjct: 84  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNK 141
Query: 124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           LLVGNK D  +++VV       FA   G  F+E SAK   NV+Q F     +I
Sbjct: 142 LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  177 bits (448), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 92/168 (54%), Positives = 119/168 (70%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +KL IWD
Sbjct: 21  EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 80
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  KLLVGN
Sbjct: 81  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGN 138
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I
Sbjct: 139 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  177 bits (448), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 92/168 (54%), Positives = 119/168 (70%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +KL IWD
Sbjct: 2   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  KLLVGN
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGN 119
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I
Sbjct: 120 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  174 bits (440), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 91/168 (54%), Positives = 118/168 (70%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+D LFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +KL IWD
Sbjct: 2   EYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  KLLVGN
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGN 119
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I
Sbjct: 120 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  173 bits (439), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 91/168 (54%), Positives = 118/168 (70%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +KL IWD
Sbjct: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  KLLVG 
Sbjct: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGI 121
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  172 bits (436), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/160 (52%), Positives = 116/160 (72%), Gaps = 3/160 (1%)
Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDT 69
           + YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + + + GK++KL IWDT
Sbjct: 7   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 66
Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQE FR++T SYYRGA G ++VYD+TRRDTF +L+  W ++   +S N + + +L+GNK
Sbjct: 67  AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHS-NSNMVIMLIGNK 124
Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169
            D ES R V K+EG  FARE+G +F+E SAKT  NV++ F
Sbjct: 125 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 164

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 94/191 (49%), Positives = 129/191 (67%), Gaps = 7/191 (3%)
Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGG 59
           + +SS + + +D + K+L+IGDSGVGKS LL+ F  D F      TIG+DFK+K VD+ G
Sbjct: 7   VSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING 66
Query: 60  KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ 119
           KK+KL +WDTAGQERFRT+T++YYRGA GII+VYDVT   TFTN+   W K ++ ++ N 
Sbjct: 67  KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-ND 124
Query: 120 DCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF---EELVLKI 176
           +   LLVGNK D E+ RVVT  +G   A+E G  FIE SAK   NV + F    +L+ + 
Sbjct: 125 EAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183
Query: 177 LDTPSLLAEGS 187
           +D+  L+  G+
Sbjct: 184 IDSNKLVGVGN 194

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  168 bits (425), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 83/158 (52%), Positives = 116/158 (73%), Gaps = 3/158 (1%)
Query: 13  YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAG 71
           YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + V++ GK++KL IWDTAG
Sbjct: 20  YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           QE FR++T SYYRGA G ++VYD+TRR+TF +L+  W ++   +S++   I +L+GNK D
Sbjct: 80  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTS-WLEDARQHSSSNMVI-MLIGNKSD 137
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169
            ES R V ++EG  FARE+G +F+E SAKT  NV++ F
Sbjct: 138 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  167 bits (424), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 97/205 (47%), Positives = 127/205 (61%), Gaps = 6/205 (2%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFKLL+IG+SGVGKS LLL F+ D +  +   TIGVDFK+K V++ GK +KL IWD
Sbjct: 4   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFRT+TSSYYRG+ GII+VYDVT +++F  +  +W +EID Y+T+   +KLLVGN
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYATST-VLKLLVGN 121
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS---LLAE 185
           K D + +RVV       FA      F+E SA    NV+  F  +  +I ++ S   L   
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181
Query: 186 GSKGLKKNIFKQKPPEADAAASGCC 210
             K   K     K         GCC
Sbjct: 182 TQKKEDKGNVNLKGQSLTNTGGGCC 206

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  167 bits (422), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 87/174 (50%), Positives = 114/174 (65%), Gaps = 3/174 (1%)
Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKL 62
           S+ +   + Y+FK ++IGD GVGKS LL  FT   F    P TIGV+F  + ++V G+K+
Sbjct: 5   SATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI 64
Query: 63  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI 122
           KL IWDTAGQERFR +T SYYRGA G +MVYD+TRR T+ +LS       +L  TN + +
Sbjct: 65  KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPNTV 122
Query: 123 KLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            +L+GNK D E++R VT +E   FA E G LF+E SAKT  NV+  F E   KI
Sbjct: 123 IILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  167 bits (422), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 118/174 (67%), Gaps = 13/174 (7%)
Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIW 67
           +++D+LFKLL+IGDSGVGKSSLLL F  + F      TIGVDFK++ V++ G+K+KL IW
Sbjct: 4   RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 63
Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC---IKL 124
           DTAGQERFRT+TS+YYRG  G+I+VYDVT  ++F N+   W  EI     NQ+C    ++
Sbjct: 64  DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR-WLHEI-----NQNCDDVCRI 117
Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ---CFEELVLK 175
           LVGNK D    +VV  ++   FA + G    E SAK  VNV++   C  ELVL+
Sbjct: 118 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 171

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  166 bits (420), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 120/173 (69%), Gaps = 3/173 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFKLL+IG+SGVGKS LLL F+ D +  +   TIGVDFK+K V++ GK +KL IWD
Sbjct: 4   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFRT+TSSYYRG+ GII+VYDVT +++F  +  +W +EID Y+T+   +KLLVGN
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYATST-VLKLLVGN 121
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
           K D + +RVV       FA      F+E SA    NV+  F  +  +I ++ S
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 80/169 (47%), Positives = 118/169 (69%), Gaps = 3/169 (1%)
Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIW 67
           + +DYLFKLL+IGDSGVGK+ +L  F+ D F      TIG+DFK++ +++ GK++KL IW
Sbjct: 3   KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62
Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ +++  D  K+++G
Sbjct: 63  DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHAS-ADVEKMILG 120
Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           NK D   +R V+K+ G   A +YG  F+E SAK  +NV+  F  L   I
Sbjct: 121 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 88/159 (55%), Positives = 111/159 (69%), Gaps = 4/159 (2%)
Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           D + K+L+IGDSGVGKS LL+ F  D F      TIG+DFK+K VD+ GKK+KL IWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQERFRT+T++YYRGA GII+VYD+T   TFTN+   W K ++ ++ N +   LLVGNK 
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKS 118
Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169
           D E+ RVVT  +G   A+E G  FIE SAK   NV + F
Sbjct: 119 DMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 89/168 (52%), Positives = 117/168 (69%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFKLL+IG+SGVGKS LLL F+ D +  +   TIGVDFK+K V++ GK +KL IWD
Sbjct: 17  EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 76
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFRT+TSSYYRG+ GII+VYDVT +++F  +  +W +EID Y+T+   +KLLVGN
Sbjct: 77  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYATST-VLKLLVGN 134
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D + +RVV       FA      F+E SA    NV+  F  +  +I
Sbjct: 135 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 87/162 (53%), Positives = 113/162 (69%), Gaps = 3/162 (1%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +KL IWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           FRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  KLLVGNK D  +
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGNKCDLTT 118
Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ++VV       FA   G  F+E SAK   NV+Q F  +  +I
Sbjct: 119 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 88/159 (55%), Positives = 111/159 (69%), Gaps = 4/159 (2%)
Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           D + K+L+IGDSGVGKS LL+ F  D F      TIG+DFK+K VD+ GKK+KL IWDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQERFRT+T++YYRGA GII+VYD+T   TFTN+   W K ++ ++ N +   LLVGNK 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKS 118
Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169
           D E+ RVVT  +G   A+E G  FIE SAK   NV + F
Sbjct: 119 DXET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/203 (44%), Positives = 121/203 (59%), Gaps = 10/203 (4%)
Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIW 67
             FDY FK+L+IG+S VGK+S L  +  D+F      T+G+DFKVK +    K++KL IW
Sbjct: 3   HXFDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIW 62
Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAG ER+RT+T++YYRGA G I+ YD+T  ++F  + D W+ +I  YS +   + LLVG
Sbjct: 63  DTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQD-WSTQIKTYSWDNAQV-LLVG 120
Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI-------LDTP 180
           NK D E ERVV+ + G   A   G  F E SAK  +NV+Q FE LV  I       LDT 
Sbjct: 121 NKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESLDTA 180
Query: 181 SLLAEGSKGLKKNIFKQKPPEAD 203
                G+K   +   +Q PP  D
Sbjct: 181 DPAVTGAKQGPQLTDQQAPPHQD 203

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  164 bits (416), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/168 (47%), Positives = 116/168 (69%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWD 68
             DYLFKLL+IGDSGVGK+ +L  F+ D F      TIG+DFK++ +++ GK++KL IWD
Sbjct: 2   HMDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 61
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ +++  D  K+++GN
Sbjct: 62  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHAS-ADVEKMILGN 119
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D   +R V+K+ G   A +YG  F+E SAK  +NV+  F  L   I
Sbjct: 120 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  164 bits (415), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 88/159 (55%), Positives = 111/159 (69%), Gaps = 4/159 (2%)
Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           D + K+L+IGDSGVGKS LL+ F  D F      TIG+DFK+K VD+ GKK+KL +WDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQERFRT+T++YYRGA GII+VYDVT   TFTN+   W K ++ ++ N +   LLVGNK 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKS 118
Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169
           D E+ RVVT  +G   A+E G  FIE SAK   NV + F
Sbjct: 119 DXET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  164 bits (414), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 86/175 (49%), Positives = 113/175 (64%), Gaps = 3/175 (1%)
Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKK 61
           S + +   + Y+FK ++IGD GVGKS LL  FT   F    P TIGV+F  + ++V G+K
Sbjct: 19  SMATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK 78
Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           +KL IWDTAGQ RFR +T SYYRGA G +MVYD+TRR T+ +LS       +L  TN + 
Sbjct: 79  IKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPNT 136
Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + +L+GNK D E++R VT +E   FA E G LF+E SAKT  NV+  F E   KI
Sbjct: 137 VIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  164 bits (414), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 87/157 (55%), Positives = 110/157 (70%), Gaps = 4/157 (2%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           + K+L+IGDSGVGKS LL+ F  D F      TIG+DFK+K VD+ GKK+KL +WDTAGQ
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           ERFRT+T++YYRGA GII+VYDVT   TFTN+   W K ++ ++ N +   LLVGNK D 
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDM 124
Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169
           E+ RVVT  +G   A+E G  FIE SAK   NV + F
Sbjct: 125 ET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 160

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  163 bits (412), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 86/175 (49%), Positives = 115/175 (65%), Gaps = 3/175 (1%)
Query: 8   QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAI 66
           Q  FDY+FKLL+IG+S VGK+S L  +  D F      T+G+DFKVK V    K++KL I
Sbjct: 17  QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQI 76
Query: 67  WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLV 126
           WDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D WA +I  YS +   + +LV
Sbjct: 77  WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYSWDNAQV-ILV 134
Query: 127 GNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
           GNK D E ERVV  ++G   A + G  F E SAK  ++V+Q FE LV  I D  S
Sbjct: 135 GNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/164 (49%), Positives = 111/164 (67%), Gaps = 3/164 (1%)
Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDT 69
           FDY+FK+L+IG+S VGK+S L  +  D+F      T+G+DFKVK +    K++KL IWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS +   + LLVGNK
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-LLVGNK 119
Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
            D E ERVV+ + G   A   G  F E SAK  +NV+Q FE LV
Sbjct: 120 CDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 163

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 85/174 (48%), Positives = 123/174 (70%), Gaps = 4/174 (2%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKL 64
            S +  D+  ++++IG  GVGK+SL+  FT D F E    T+GVDFK+K V++ GKK++L
Sbjct: 18  GSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRL 77
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL 124
            IWDTAGQERF ++TS+YYR A+GII+VYD+T+++TF +L   W K ID Y++ +D   L
Sbjct: 78  QIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYAS-EDAELL 135
Query: 125 LVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEELVLKIL 177
           LVGNK+D E++R +T+++G  FA++  G  F E SAK   NV + F +LV  IL
Sbjct: 136 LVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  158 bits (400), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/163 (49%), Positives = 111/163 (68%), Gaps = 3/163 (1%)
Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           DY+FKLL+IG+S VGK+S L  +  D+F      T+G+DFKVK V    K++KL IWDTA
Sbjct: 20  DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQER+RT+T++YYRGA G +++YD+  +++F  + D WA +I  YS +   + +LVGNK 
Sbjct: 80  GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQD-WATQIKTYSWDNAQV-ILVGNKC 137
Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
           D E ERVV  ++G   A + G  F E SAK  +NV+Q FE LV
Sbjct: 138 DLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 107/161 (66%), Gaps = 4/161 (2%)
Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNF--EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           +D  FK++++GDSGVGK+ LL+ F    F       T+G+DF+ K +DV G K+KL +WD
Sbjct: 7   YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFR++T +YYR A  ++++YDVT + +F N+   W  EI  Y+   D   +L+GN
Sbjct: 67  TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQ-AWLTEIHEYA-QHDVALMLLGN 124
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169
           KVD   ERVV +++G   A+EYG  F+E SAKT +NV   F
Sbjct: 125 KVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 165

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  149 bits (377), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 79/171 (46%), Positives = 117/171 (68%), Gaps = 3/171 (1%)
Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIW 67
           + +D+LFK L+IG++G GKS LL  F    F++ S  TIGV+F  K ++VGGK +KL IW
Sbjct: 5   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAGQERFR++T SYYRGA G ++VYD+T R+T+  L++ W  +  + ++ Q+ + +L G
Sbjct: 65  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIILCG 122
Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           NK D +++R VT  E   FA+E   +F+E SA T  NV++ F +   KIL+
Sbjct: 123 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 173

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 110/168 (65%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFK+++IGDSGVGKS+LL  FT + F  E   TIGV+F  + + V GK +K  IWD
Sbjct: 25  EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 84
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + + +LVGN
Sbjct: 85  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGN 142
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D    R V   E   FA + G  FIE SA    NV+  F+ ++ +I
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  147 bits (371), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 78/171 (45%), Positives = 117/171 (68%), Gaps = 3/171 (1%)
Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIW 67
           + +D+LFK L+IG++G GKS LL  F    F++ S  TIGV+F  K ++VGGK +KL IW
Sbjct: 6   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 65
Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAGQERFR++T SYYRGA G ++VYD+T R+T+  L++ W  +  + ++ Q+ + +L G
Sbjct: 66  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIILCG 123
Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           NK D +++R VT  E   FA+E   +F+E SA T  +V++ F +   KIL+
Sbjct: 124 NKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 174

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  147 bits (370), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 76/167 (45%), Positives = 109/167 (65%), Gaps = 3/167 (1%)
Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDT 69
           +DYLFK+++IGDSGVGKS+LL  FT + F  E   TIGV+F  + + V GK +K  IWDT
Sbjct: 17  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 76
Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + + +LVGNK
Sbjct: 77  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGNK 134
Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            D    R V   E   FA + G  FIE SA    NV+  F+ ++ +I
Sbjct: 135 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 181

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  146 bits (368), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 113/170 (66%), Gaps = 4/170 (2%)
Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKL-KLAIWD 68
           +DYLFK+++IGDSGVGKS+LL  FT D F  E   TIGV+F  K + +   K+ K  IWD
Sbjct: 4   YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQER+R +TS+YYRGA G ++VYD+T++++F N+ + W KE+   + + + + LLVGN
Sbjct: 64  TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELR-DNADSNIVILLVGN 121
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           K D +  RV+   +   +A++    FIE SA    NV+  F +L+ +I +
Sbjct: 122 KSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYN 171

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/167 (44%), Positives = 109/167 (65%), Gaps = 3/167 (1%)
Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDT 69
           +DYLFK+++IGDSGVGKS+LL  FT + F  E   TIGV+F  + + V GK +K  IWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + + +LVGNK
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGNK 119
Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            D    R V   E   FA +    FIE SA    NV++ F+ ++ +I
Sbjct: 120 SDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 166

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/168 (45%), Positives = 109/168 (64%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFK+++IGDSGVGKS+LL  FT + F  E   TIGV+F  + + V GK +K  IWD
Sbjct: 25  EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 84
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAG ER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + + +LVGN
Sbjct: 85  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGN 142
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D    R V   E   FA + G  FIE SA    NV+  F+ ++ +I
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/173 (42%), Positives = 116/173 (67%), Gaps = 3/173 (1%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKL 64
            S +++D+LFK+++IG++GVGK+ L+  FT   F      TIGVDF +K V++ G+K+KL
Sbjct: 18  GSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKL 77
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL 124
            IWDTAGQERFR++T SYYR A  +I+ YD+T  ++F  L + W +EI+ Y++N+  I +
Sbjct: 78  QIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE-WLREIEQYASNK-VITV 135
Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           LVGNK+D    R V+++    F+      ++E SAK   NV++ F +L  +++
Sbjct: 136 LVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 188

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/168 (45%), Positives = 109/168 (64%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFK+++IGDSGVGKS+LL  FT + F  E   TIGV+F  + + V GK +K  IWD
Sbjct: 4   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 63
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAG ER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + + +LVGN
Sbjct: 64  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGN 121
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D    R V   E   FA + G  FIE SA    NV+  F+ ++ +I
Sbjct: 122 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 169

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/174 (45%), Positives = 108/174 (62%), Gaps = 5/174 (2%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           ++DYLFK+++IGDSGVGKS+LL  FT+D F  E   TIGV+F  + ++V  KK+K  IWD
Sbjct: 6   DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWD 65
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVG 127
           TAG ER+R +TS+YYRGA G ++VYD+++  ++ N +  W  E  L     D + + L+G
Sbjct: 66  TAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNH-WLTE--LRENADDNVAVGLIG 122
Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
           NK D    R V   E  NFA E   LF E SA    NV + F EL++ I    S
Sbjct: 123 NKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVS 176

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFK+++IGDSGVGKS+LL  FT + F  E   TIGV+F  + + V GK +K  IWD
Sbjct: 1   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 60
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAG ER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + +  LVGN
Sbjct: 61  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIXLVGN 118
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D    R V   E   FA + G  FIE SA    NV+  F+ ++ +I
Sbjct: 119 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  144 bits (363), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 116/171 (67%), Gaps = 3/171 (1%)
Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIW 67
           + +D+LFK L+IG++G GKS LL  F    F++ S  TIGV+F  K ++VGGK +KL IW
Sbjct: 3   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 62
Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAG ERFR++T SYYRGA G ++VYD+T R+T+  L++ W  +  + ++ Q+ + +L G
Sbjct: 63  DTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIILCG 120
Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           NK D +++R VT  E   FA+E   +F+E SA T  +V++ F +   KIL+
Sbjct: 121 NKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 171

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  144 bits (363), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 3/168 (1%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFK+++IGDSGVGKS+LL  FT + F  E   TIGV+F  + + V GK +K  IWD
Sbjct: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 66
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAG ER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + +  LVGN
Sbjct: 67  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIXLVGN 124
Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D    R V   E   FA + G  FIE SA    NV+  F+ ++ +I
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 80/168 (47%), Positives = 109/168 (64%), Gaps = 3/168 (1%)
Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           D+LFK L+IG +G GKS LL  F  + F++ S  TIGV+F  + V+VGGK +KL IWDTA
Sbjct: 23  DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQERFR++T SYYRGA G ++VYD+T R+T+ +L+        L S N   + +L GNK 
Sbjct: 83  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKK 140
Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           D + ER VT  E   FA+E   +F+E SA T  NV++ F +    IL+
Sbjct: 141 DLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 188

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 108/169 (63%), Gaps = 5/169 (2%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           ++D LFK+++IGDSGVGKS+LL  FT + F  +   TIGV+F  + +++ GK++K  IWD
Sbjct: 9   DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWD 68
Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVG 127
           TAGQER+R +TS+YYRGA G ++VYD+++  ++ N +  W  E  L     D + + L+G
Sbjct: 69  TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNH-WLSE--LRENADDNVAVGLIG 125
Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           NK D    R V  +E   FA+E   LF E SA    NV + FEEL+  I
Sbjct: 126 NKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTI 174

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  139 bits (351), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 73/173 (42%), Positives = 113/173 (65%), Gaps = 8/173 (4%)
Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIW 67
           +++D+LFKL+++GD+ VGK+ ++  F +  F E    TIGVDF +K +++ GK++KL IW
Sbjct: 24  EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIW 83
Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAGQERFRT+T SYYR A G I+ YD+T+R +F ++   W +++  Y+   + ++LL+G
Sbjct: 84  DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPH-WIEDVRKYA-GSNIVQLLIG 141
Query: 128 NKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCF----EELVLK 175
           NK D    R V+  E  + A  Y  L  IE SAK   NV++ F     EL+++
Sbjct: 142 NKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 90/116 (77%), Gaps = 3/116 (2%)
Query: 17  LLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           LL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +KL IWDTAGQERF
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           RT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  KLLVGNK D
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGNKCD 114

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 109/174 (62%), Gaps = 5/174 (2%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKL 64
           +  ++++++FK+++IG+SGVGK++LL  FT + F   S  TIGV+F  + V +G   +K 
Sbjct: 2   SHMEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKA 61
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-K 123
            IWDTAG ER+R +TS+YYRGA G ++V+D+T+  T+  + + W KE  LY   +  I  
Sbjct: 62  QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKE--LYDHAEATIVV 118
Query: 124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           +LVGNK D    R V  +E   FA   G LF+E SA    NV+  FE ++ +I 
Sbjct: 119 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 172

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 108/171 (63%), Gaps = 5/171 (2%)
Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIW 67
           ++++++FK+++IG+SGVGK++LL  FT + F   S  TIGV+F  + V +G   +K  IW
Sbjct: 20  EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 79
Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLV 126
           DTAG ER+R +TS+YYRGA G ++V+D+T+  T+  + + W KE  LY   +  I  +LV
Sbjct: 80  DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKE--LYDHAEATIVVMLV 136
Query: 127 GNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           GNK D    R V  +E   FA   G LF+E SA    NV+  FE ++ +I 
Sbjct: 137 GNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 187

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/158 (44%), Positives = 95/158 (60%), Gaps = 6/158 (3%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++G++ VGKSS++L F S++F E   PTIG  F  + V +    +K  IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           F +L   YYR AQ  ++VYDVT+  +F      W KE+     ++D I  LVGNK+D   
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARH-WVKELH-EQASKDIIIALVGNKIDXLQ 122
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169
           +  ER V ++EG   A E G LF E SAKT  NV   F
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 98/163 (60%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+ ++GD+GVGKSS++  F  D+F+  +SPTIG  F  K V  G +  K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RF +L   YYRG+   ++VYD+T++D+F  L   W KE+  +   ++ +  + GNK D  
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKK-WVKELKEHGP-ENIVMAIAGNKCDLS 141
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
             R V  K+   +A   G + +E SAK  +N+++ F+ +  +I
Sbjct: 142 DIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  126 bits (317), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 70/163 (42%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  DTF    + W KE+   ++    I  L GNK D  
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-WVKELQRQASPNIVIA-LAGNKADLA 121
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           S+R V  +E   +A +   LF+E SAKT +NV + F  +  K+
Sbjct: 122 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 104/168 (61%), Gaps = 3/168 (1%)
Query: 13  YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAG 71
           Y FK++++G+  VGK+SL+L +  + F +    T+G  F  K +++GGK++ LAIWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           QERF  L   YYR + G I+VYD+T  D+F  + + W KE+     N+ C+  +VGNK+D
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKID 122
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
            E ER V+ +E  ++A   G      SAK    +++ F +L  ++++T
Sbjct: 123 LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 170

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 110/184 (59%), Gaps = 12/184 (6%)
Query: 5   SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYV-------- 55
           S S  ++DYL K L +GDSGVGK+S+L  +T   F  +   T+G+DF+ K V        
Sbjct: 2   SMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPD 61
Query: 56  -DVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEID 113
             VG G+++ L +WDTAG ERFR+LT++++R A G ++++D+T   +F N+ + W  ++ 
Sbjct: 62  GAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQ 120
Query: 114 LYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
           +++ +++   +L GNK D E +R V ++E    A +YG  + E SA    N+    E L+
Sbjct: 121 MHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180
Query: 174 LKIL 177
             I+
Sbjct: 181 DLIM 184

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 98/166 (59%), Gaps = 3/166 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+ ++GD+GVGKSS++  F  D+F+  ++PTIG  F  K V    +  K  IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFR L   YYRG+   I+VYD+T+ +TF+ L + W +E+  +      +  + GNK D  
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHGP-PSIVVAIAGNKCDLT 123
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
             R V +++  ++A     +F+E SAK  +N+ + F E+  +I  T
Sbjct: 124 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPST 169

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T ++TF   +  W KE+   ++    I  L GNK D  
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFAR-AKTWVKELQRQASPSIVIA-LAGNKADLA 126
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ++R+V  +E   +A +   LF+E SAKT +NV   F  +  K+
Sbjct: 127 NKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TI   F  + V +    +K  IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  DTF    + W KE+   ++    I  L GNK D  
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-WVKELQRQASPNIVIA-LAGNKADLA 123
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           S+R V  +E   +A +   LF+E SAKT +NV + F  +  K+
Sbjct: 124 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  DTF    + W KE+   ++    I  L GNK D  
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-WVKELQRQASPNIVIA-LAGNKADLA 123
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           S+R V  +E   +A +   LF+E SAKT +NV + F  +  K+
Sbjct: 124 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  123 bits (308), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 66/162 (40%), Positives = 94/162 (58%), Gaps = 3/162 (1%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD G GKSSL+L F  D F E    TIG  F  + + V    +K  IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           + +L   YYRGA   I+V+DVT + +F   +  W +E+     N + +  L GNK D   
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFER-AKKWVQELQAQG-NPNMVMALAGNKSDLLD 131
Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            R VT ++   +A+E G  F+E SAKT  NV++ F E+  ++
Sbjct: 132 ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  123 bits (308), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  ++F    + W KE+   ++  + +  L GNK D  
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 125
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ++R V  +E  ++A +   LF+E SAKT +NV + F  +  K+
Sbjct: 126 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  123 bits (308), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  ++F    + W KE+   ++  + +  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ++R V  +E  ++A +   LF+E SAKT +NV + F  +  K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  123 bits (308), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 109/181 (60%), Gaps = 16/181 (8%)
Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGK-------- 60
           ++DYL KLL +GDSGVGK++ L  +T + F  +   T+G+DF+ K V    +        
Sbjct: 21  DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80
Query: 61  --KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEI--DLYS 116
             K+ L +WDTAGQERFR+LT++++R A G ++++D+T + +F N+ + W  ++  + Y 
Sbjct: 81  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYC 139
Query: 117 TNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            N D +  L+GNK D   +R V +++    A +YG  + E SA T  NV++  E L+  I
Sbjct: 140 ENPDIV--LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197
Query: 177 L 177
           +
Sbjct: 198 M 198

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  123 bits (308), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 103/168 (61%), Gaps = 3/168 (1%)
Query: 13  YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAG 71
           Y FK++++G+  VGK+SL+L +  + F +    T+   F  K +++GGK++ LAIWDTAG
Sbjct: 19  YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           QERF  L   YYR + G I+VYD+T  D+F  + + W KE+     N+ C+  +VGNK+D
Sbjct: 79  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKID 136
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
            E ER V+ +E  ++A   G      SAK    +++ F +L  ++++T
Sbjct: 137 LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 184

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 103/168 (61%), Gaps = 3/168 (1%)
Query: 13  YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAG 71
           Y FK++++G+  VGK+SL+L +  + F +    T+   F  K +++GGK++ LAIWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           QERF  L   YYR + G I+VYD+T  D+F  + + W KE+     N+ C+  +VGNK+D
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKID 122
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
            E ER V+ +E  ++A   G      SAK    +++ F +L  ++++T
Sbjct: 123 LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 170

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 97/166 (58%), Gaps = 3/166 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+ ++GD+GVGKSS++  F  D+F+  ++PTIG  F  K V    +  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFR L   YYRG+   I+VYD+T+ +TF+ L + W +E+  +      +  + GNK D  
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHGP-PSIVVAIAGNKCDLT 124
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
             R V +++  ++A     +F+E SAK  +N+ + F E+  +I  T
Sbjct: 125 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPST 170

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  ++F    + W KE+   ++  + +  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ++R V  +E  ++A +   LF+E SAKT +NV + F  +  K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  ++F    + W KE+   ++  + +  L GNK D  
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 125
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ++R V  +E  ++A +   LF E SAKT  NV + F  +  K+
Sbjct: 126 NKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  ++F    + W KE+   ++  + +  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ++R V  +E  ++A +   LF+E SAKT +NV + F  +  K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  ++F    + W KE+   ++  + +  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ++R V  +E  ++A +   LF+E SAKT +NV + F  +  K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  ++F    + W KE+   ++  + +  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ++R V  +E  ++A +   LF+E SAKT +NV + F  +  K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 111/186 (59%), Gaps = 16/186 (8%)
Query: 5   SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYV--DVGGK- 60
           S +  ++DYL KLL +GDSGVGK++ L  +T + F  +   T+G+DF+ K V  D  G  
Sbjct: 2   SMTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 61  -------KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEI- 112
                  K+ L +WDTAG ERFR+LT++++R A G ++++D+T + +F N+ + W  ++ 
Sbjct: 62  GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQ 120
Query: 113 -DLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171
            + Y  N D +  L+GNK D   +R V +++    A +YG  + E SA T  NV++  E 
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 172 LVLKIL 177
           L+  I+
Sbjct: 179 LLDLIM 184

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  121 bits (303), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  ++F    + W KE+   ++  + +  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ++R V  +E  ++A +   LF+E SAKT +NV + F  +  K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  121 bits (303), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 111/186 (59%), Gaps = 16/186 (8%)
Query: 5   SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYV--DVGGK- 60
           S +  ++DYL KLL +GDSGVGK++ L  +T + F  +   T+G+DF+ K V  D  G  
Sbjct: 2   SMTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 61  -------KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEI- 112
                  K+ L +WDTAG ERFR+LT++++R A G ++++D+T + +F N+ + W  ++ 
Sbjct: 62  GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQ 120
Query: 113 -DLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171
            + Y  N D +  L+GNK D   +R V +++    A +YG  + E SA T  NV++  E 
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 172 LVLKIL 177
           L+  I+
Sbjct: 179 LLDLIM 184

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  120 bits (300), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 108/182 (59%), Gaps = 16/182 (8%)
Query: 5   SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYV--DVGGK- 60
           S +  ++DYL KLL +GDSGVGK++ L  +T + F  +   T+G+DF+ K V  D  G  
Sbjct: 2   SXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 61  -------KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEI- 112
                  K+ L +WDTAG ERFR+LT++++R A G ++ +D+T + +F N+ + W  ++ 
Sbjct: 62  GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRN-WXSQLQ 120
Query: 113 -DLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171
            + Y  N D +  L+GNK D   +R V +++    A +YG  + E SA T  NV++  E 
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 172 LV 173
           L+
Sbjct: 179 LL 180

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  120 bits (300), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  ++F    + W KE+   ++  + +  L GNK D  
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 123
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ++R V  +E  ++A +   LF+E SAKT +NV + F  +  K+
Sbjct: 124 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  120 bits (300), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 101/167 (60%), Gaps = 7/167 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+ +G+  VGK+SL+  F  D+F+     TIG+DF  K + +  + ++L +WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVGNKVD 131
           RFR+L  SY R +   ++VYD+T  ++F   S    K ID   T +  D I +LVGNK D
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTS----KWIDDVRTERGSDVIIMLVGNKTD 118
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
              +R +T +EG   A+E   +FIE SAKT  NV+Q F  +   +L+
Sbjct: 119 LADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  120 bits (300), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 108/182 (59%), Gaps = 16/182 (8%)
Query: 5   SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYV--DVGGK- 60
           S +  ++DYL KLL +GDSGVGK++ L  +T + F  +   T+G+DF+ K V  D  G  
Sbjct: 2   SXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 61  -------KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEI- 112
                  K+ L +WDTAG ERFR+LT++++R A G ++ +D+T + +F N+ + W  ++ 
Sbjct: 62  GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRN-WXSQLQ 120
Query: 113 -DLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171
            + Y  N D +  L+GNK D   +R V +++    A +YG  + E SA T  NV++  E 
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 172 LV 173
           L+
Sbjct: 179 LL 180

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  117 bits (293), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 98/165 (59%), Gaps = 7/165 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDF--KVKYVDVGGKKLKLAIWDTAG 71
           +KL+ +G+  VGK+S++  F  D F+     TIG+DF  K  Y+D G  +L+L  WDTAG
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQL--WDTAG 59
Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           QERFR+L  SY R +   I+VYD+T R +F N +  W ++I L    +D I  LVGNK D
Sbjct: 60  QERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK-WIQDI-LNERGKDVIIALVGNKTD 117
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
               R VT +EG   A+EY   F E SAK   N++  F++   K+
Sbjct: 118 LGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  117 bits (293), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 97/161 (60%), Gaps = 7/161 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+ +G+  VGK+SL+  F  D+F+     TIG+DF  K + +  + ++L +WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVGNKVD 131
           RFR+L  SY R +   ++VYD+T  ++F   S    K ID   T +  D I +LVGNK D
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTS----KWIDDVRTERGSDVIIMLVGNKTD 130
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172
              +R V+ +EG   A+E   +FIE SAK   NV+Q F  +
Sbjct: 131 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  116 bits (291), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 97/161 (60%), Gaps = 7/161 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+ +G+  VGK+SL+  F  D+F+     TIG+DF  K + +  + ++L +WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVGNKVD 131
           RFR+L  SY R +   ++VYD+T  ++F   +    K ID   T +  D I +LVGNK D
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT----KWIDDVRTERGSDVIIMLVGNKTD 122
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172
              +R V+ +EG   A+E   +FIE SAK   NV+Q F  +
Sbjct: 123 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  116 bits (291), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 110/199 (55%), Gaps = 8/199 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+ +G+  VGK+SL+  F  D+F+     TIG+DF  K + +  + ++L +WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVGNKVD 131
           RFR+L  SY R +   ++VYD+T  ++F   +    K ID   T +  D I +LVGNK D
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT----KWIDDVRTERGSDVIIMLVGNKTD 129
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLK 191
              +R V+ +EG   A+E   +FIE SAK   NV+Q F  +   +    S   + S+   
Sbjct: 130 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES-TQDRSREDM 188
Query: 192 KNIFKQKPPEADAAASGCC 210
            +I  +KP E   +  GC 
Sbjct: 189 IDIKLEKPQEQPVSEGGCS 207

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  116 bits (290), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 107/171 (62%), Gaps = 7/171 (4%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           LFK++++GD GVGKSSL+  + ++ F+ +L  TIGV+F  K ++V G  + + IWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNK 129
           ERFR+L + +YRG+   ++ + V    +F NLS+ W KE   Y+  ++      +++GNK
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNK 127
Query: 130 VDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEELVLKILDT 179
           +D  SER V+ +E   + R+ G   + E SAK   NV   FEE V ++L T
Sbjct: 128 IDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 177

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  116 bits (290), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 107/171 (62%), Gaps = 7/171 (4%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           LFK++++GD GVGKSSL+  + ++ F+ +L  TIGV+F  K ++V G  + + IWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNK 129
           ERFR+L + +YRG+   ++ + V    +F NLS+ W KE   Y+  ++      +++GNK
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNK 125
Query: 130 VDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEELVLKILDT 179
           +D  SER V+ +E   + R+ G   + E SAK   NV   FEE V ++L T
Sbjct: 126 IDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 106/169 (62%), Gaps = 7/169 (4%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++++GD GVGKSSL+  + ++ F+  +  TIGV+F  + ++V G+ + L IWDTAGQ
Sbjct: 7   LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNK 129
           ERF++L + +YRGA   ++ + V  R +F NL + W KE   Y+  +D      +++GNK
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGN-WQKEFIYYADVKDPEHFPFVVLGNK 125
Query: 130 VDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           VDKE +R VT +E   +  E G   ++E SAK   NV   FEE V ++L
Sbjct: 126 VDKE-DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 100/169 (59%), Gaps = 9/169 (5%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +K+++ GD+ VGKSS L+    + F E +S T+GVDF++K + V G++  L +WDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD-- 131
           RFR++  SY+R A G++++YDVT   +F N+ + W   I+  + ++    +LVGNK D  
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE-WVDMIE-DAAHETVPIMLVGNKADIR 146
Query: 132 ----KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
                E ++ V    G   A  YG LF E SAK   N+ +    L  ++
Sbjct: 147 DTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 102/164 (62%), Gaps = 4/164 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L + F    F E+  PTI   ++ K V+V  ++  L I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  +   Y +  QG  +VY +T + TF +L D+  + + +  T+ D   +LVGNK D E
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD-DVPMILVGNKCDLE 121
Query: 134 SERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEELVLKI 176
            ERVV K++G N AR++  C F+E SAK+++NV + F +LV +I
Sbjct: 122 DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 102/164 (62%), Gaps = 4/164 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L + F    F E+  PTI   ++ K V+V  ++  L I DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 64
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  +   Y +  QG  +VY +T + TF +L D+  + + +  T+ D   +LVGNK D E
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD-DVPMILVGNKCDLE 123
Query: 134 SERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEELVLKI 176
            ERVV K++G N AR++  C F+E SAK+++NV + F +LV +I
Sbjct: 124 DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 97/161 (60%), Gaps = 7/161 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+ +G+  VGK+SL+  F  D+F+     TIG+DF  K + +  + ++L +WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVGNKVD 131
           RFR+L  SY R +   ++VYD+T  ++F   +    K ID   T +  D I +LVGNK D
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT----KWIDDVRTERGSDVIIMLVGNKTD 117
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172
              +R V+ +EG   A+E   +FIE SAK   NV+Q F  +
Sbjct: 118 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 110/199 (55%), Gaps = 8/199 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+ +G+  VGK+SL+  F  D+F+     TIG+DF  K + +  + ++L +WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVGNKVD 131
           RFR+L  SY R +   ++VYD+T  ++F   +    K ID   T +  D I +LVGNK D
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT----KWIDDVRTERGSDVIIMLVGNKTD 132
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLK 191
              +R V+ +EG   A+E   +FIE SAK   NV+Q F  +   +    S   + S+   
Sbjct: 133 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES-TQDRSREDM 191
Query: 192 KNIFKQKPPEADAAASGCC 210
            +I  +KP E   +  GC 
Sbjct: 192 IDIKLEKPQEQPVSEGGCL 210

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 102/164 (62%), Gaps = 4/164 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L + F    F +E  PTI   ++ K V+V  ++  L I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  +   Y +  QG  +VY +T + TF +L D+  + + +  T +D   +LVGNK D E
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLE 121
Query: 134 SERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEELVLKI 176
            ERVV K++G N AR++  C F+E SAK+++NV + F +LV +I
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score =  114 bits (284), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 102/164 (62%), Gaps = 4/164 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L + F    F E+  PTI   ++ K V+V  ++  L I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  +   Y +  QG  +VY +T + TF +L D+  + + +  T +D   +LVGNK D E
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLE 121
Query: 134 SERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEELVLKI 176
            ERVV K++G N AR++  C F+E SAK+++NV + F +LV +I
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  113 bits (283), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 106/171 (61%), Gaps = 7/171 (4%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           LFK++++GD GVGKSSL+  + ++ F+ +L  TIGV+F  K ++V G  + + IWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNK 129
           ERFR+L + +YRG+   ++ + V    +F NLS+ W KE   Y+  ++      +++GNK
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNK 129
Query: 130 VDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEELVLKILDT 179
            D + ER V+ +E   + ++ G   + E SAK   NV   FEE V +IL T
Sbjct: 130 TDIK-ERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILAT 179

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 100/168 (59%), Gaps = 5/168 (2%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++++GDSGVGK+SL+  + +  F  +   TIG DF  K V V  + + + IWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNK 129
           ERF++L  ++YRGA   ++V+DVT  +TF  L D W  E  + ++ +D      +++GNK
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           +D E+ +V TK+       +    + E SAK  +NV+Q F+ +    L
Sbjct: 127 IDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 100/168 (59%), Gaps = 5/168 (2%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++++GDSGVGK+SL+  + +  F  +   TIG DF  K V V  + + + IWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNK 129
           ERF++L  ++YRGA   ++V+DVT  +TF  L D W  E  + ++ +D      +++GNK
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           +D E+ +V TK+       +    + E SAK  +NV+Q F+ +    L
Sbjct: 127 IDFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/173 (38%), Positives = 106/173 (61%), Gaps = 12/173 (6%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLK-LAIWDTAG 71
           + K++++GDSGVGK+SL+  + +D + ++   TIG DF  K V V G K+  + +WDTAG
Sbjct: 8   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK----LLVG 127
           QERF++L  ++YRGA   ++VYDVT   +F N+   W  E  L   N +  +    +++G
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS-WRDEF-LVHANVNSPETFPFVILG 125
Query: 128 NKVD-KESERVVTKKEGINFAREYG--CLFIECSAKTRVNVQQCFEELVLKIL 177
           NK+D +ES+++V++K     A+  G   LF+  SAK  +NV   FEE+    L
Sbjct: 126 NKIDAEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEIARSAL 177

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 100/168 (59%), Gaps = 5/168 (2%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++++GDSGVGK+SL+  + +  F  +   TIG DF  K V V  + + + IWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNK 129
           ERF++L  ++YRGA   ++V+DVT  +TF  L D W  E  + ++ +D      +++GNK
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           +D E+ +V TK+       +    + E SAK  +NV+Q F+ +    L
Sbjct: 127 IDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 96/161 (59%), Gaps = 7/161 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+ +G+  VGK+SL+  F  D+F+     TIG+DF  K + +  + ++L +WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVGNKVD 131
           RFR+L  SY R +   ++VYD+T  ++F   +    K ID   T +  D I +LVGNK D
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT----KWIDDVRTERGSDVIIMLVGNKTD 122
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172
              +R V+ +EG   A+E   +FIE SAK   NV+Q F  +
Sbjct: 123 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 92/168 (54%), Gaps = 6/168 (3%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           +FK+++IGDS VGK+ L   F +  F + +  TIGVDF+ + VD+ G+++K+ +WDTAGQ
Sbjct: 29  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 73  ERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           ERFR ++   YYR    ++ VYD T   +F +L   W +E   +    D  ++LVGNK D
Sbjct: 89  ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLP-AWIEECKQHLLANDIPRILVGNKCD 147
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKT---RVNVQQCFEELVLKI 176
             S   V       FA  +     E SAK      +V+  F  L  K+
Sbjct: 148 LRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 86/150 (57%), Gaps = 3/150 (2%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           +FK+++IGDS VGK+ L   F +  F + +  TIGVDF+ + VD+ G+++K+ +WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 73  ERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           ERFR ++   YYR    ++ VYD+T   +F +L   W +E   +    D  ++LVGNK D
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNKCD 138
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKT 161
             S   V       FA  +     E SAK 
Sbjct: 139 LRSAIQVPTDLAQKFADTHSMPLFETSAKN 168

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 99/168 (58%), Gaps = 5/168 (2%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++++GDSGVGK+SL+  + +  F  +   TIG DF  K V V  + + + IWDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNK 129
           ERF++L  ++YRGA   ++V+DVT  +TF  L D W  E  + ++ +D      +++GNK
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           +D E+ +V TK+       +    + E SAK  +NV+Q F+ +    L
Sbjct: 127 IDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 100/165 (60%), Gaps = 4/165 (2%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++M+G  GVGKS+L L F  D F E+  PT    ++ K V + G+++++ I DTAG 
Sbjct: 7   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 65
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLL-VGNKVD 131
           E +  +  +Y+R  +G ++V+ +T  ++FT  ++ + ++I      +D I LL VGNK D
Sbjct: 66  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAE-FREQILRVKAEEDKIPLLVVGNKSD 124
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            E  R V  +E  + A E+G  ++E SAKTR NV + F +L+ +I
Sbjct: 125 LEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 100/165 (60%), Gaps = 4/165 (2%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++M+G  GVGKS+L L F  D F E+  PT    ++ K V + G+++++ I DTAG 
Sbjct: 3   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 61
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLL-VGNKVD 131
           E +  +  +Y+R  +G ++V+ +T  ++FT  ++ + ++I      +D I LL VGNK D
Sbjct: 62  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAE-FREQILRVKAEEDKIPLLVVGNKSD 120
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            E  R V  +E  + A E+G  ++E SAKTR NV + F +L+ +I
Sbjct: 121 LEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++M+G  GVGKS+L L F  D F E+  PT    ++ K V + G+++++ I DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 76
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E +  +  +Y+R  +G + V+ +T  ++F   +D + ++I     +++   LLVGNK D 
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDL 135
Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           E +R V+ +E  N A ++   ++E SAKTR NV + F +L+ +I
Sbjct: 136 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++M+G  GVGKS+L L F  D F E+  PT    ++ K V + G+++++ I DTAGQ
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 64
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E +  +  +Y+R  +G + V+ +T  ++F   +D + ++I     +++   LLVGNK D 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDL 123
Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           E +R V+ +E  N A ++   ++E SAKTR NV + F +L+ +I
Sbjct: 124 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++M+G  GVGKS+L L F  D F E+  PT    ++ K V + G+++++ I DTAGQ
Sbjct: 14  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E +  +  +Y+R  +G + V+ +T  ++F   +D + ++I     +++   LLVGNK D 
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDL 131
Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           E +R V+ +E  N A ++   ++E SAKTR NV + F +L+ +I
Sbjct: 132 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score =  103 bits (257), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++M+G  GVGKS+L L F  D F E+  PT    ++ K V + G+++++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E +  +  +Y+R  +G + V+ +T  ++F   +D + ++I     +++   LLVGNK D 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDL 121
Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           E +R V+ +E  N A ++   ++E SAKTR NV + F +L+ +I
Sbjct: 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 99/164 (60%), Gaps = 3/164 (1%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++M+G  GVGKS+L L F  D F E+  PT    ++ K V + G+++++ I DTAG 
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 64
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E +  +  +Y+R  +G + V+ +T  ++F   +D + ++I     +++   LLVGNK D 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDL 123
Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           E +R V+ +E  N A ++   ++E SAKTR NV + F +L+ +I
Sbjct: 124 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score =  100 bits (248), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 97/178 (54%), Gaps = 6/178 (3%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKL 64
           A+Q E    FKL+++GD G GK++ +    +  FE+   PT+GV+            +K 
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKF 61
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL 124
            +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +
Sbjct: 62  NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIV 118
Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 97/178 (54%), Gaps = 6/178 (3%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKL 64
           A+Q E    FKL+++GD G GK++ +    +  FE+   PT+GV+            +K 
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKF 61
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL 124
            +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +
Sbjct: 62  NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIV 118
Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 98/180 (54%), Gaps = 6/180 (3%)
Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKL 62
           +SA+Q E    FKL+++GD G GK++ +    +  FE+    T+GV+            +
Sbjct: 5   ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI 64
Query: 63  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI 122
           K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++  
Sbjct: 65  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 121
Query: 123 KLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
            +L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 122 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 99/180 (55%), Gaps = 6/180 (3%)
Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLL-LSFTSDNFEELSPTIGVDFKVKYVDVGGKKL 62
           +SA+Q E    FKL+++GD G GK++ +    T ++ ++   T+GV+            +
Sbjct: 5   ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPI 64
Query: 63  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI 122
           K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++  
Sbjct: 65  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 121
Query: 123 KLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
            +L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 122 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 125
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 126 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 69
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 127
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 128 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 176

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 124
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 125 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 125
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 126 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 124
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 125 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 96/178 (53%), Gaps = 6/178 (3%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKL 64
           A+Q E    FKL+++GD G GK++ +    +  FE+    T+GV+            +K 
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL 124
            +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +
Sbjct: 62  NVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIV 118
Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 125
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 126 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 96/178 (53%), Gaps = 6/178 (3%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKL 64
           A+Q E    FKL+++GD G GK++ +    +  FE+    T+GV+            +K 
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL 124
            +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +
Sbjct: 62  NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIV 118
Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 96/178 (53%), Gaps = 6/178 (3%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKL 64
           A+Q E    FKL+++GD G GK++ +    +  FE+    T+GV+            +K 
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL 124
            +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +
Sbjct: 62  NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIV 118
Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 68
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 126
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 127 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 96/178 (53%), Gaps = 6/178 (3%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKL 64
           A+Q E    FKL+++GD G GK++ +    +  FE+    T+GV+            +K 
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL 124
            +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +
Sbjct: 62  NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIV 118
Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 6/178 (3%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKL 64
           A+Q E    FKL+++GD G GK++ +    +  FE+    T+GV+            +K 
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL 124
            +WDTAGQE+F  L   YY  AQ  I+ +DVT R T+ N+ + W +  DL    ++   +
Sbjct: 62  NVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPN-WHR--DLVRVCENIPIV 118
Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     ++D   +LVGNK D  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKSDLP 122
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           S R V  K+  + AR YG  FIE SAKTR  V   F  LV +I
Sbjct: 123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     ++D   +LVGNK D  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLP 122
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           S R V  K+  + AR YG  FIE SAKTR  V   F  LV +I
Sbjct: 123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 96/178 (53%), Gaps = 6/178 (3%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKL 64
           A+Q E    FKL+++GD G GK++ +    +  FE+    T+GV+            +K 
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL 124
            +WDTAGQE++  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +
Sbjct: 62  NVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIV 118
Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 99/191 (51%), Gaps = 18/191 (9%)
Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKL 62
           SS +      + K +++GD  VGK+ LL+S+ +D F EE  PT+   + V  V VGGK+ 
Sbjct: 8   SSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVS-VTVGGKQY 66
Query: 63  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI 122
            L ++DTAGQE +  L    Y      ++ + V    +F N+ + W  E+  Y+ N    
Sbjct: 67  LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-- 124
Query: 123 KLLVGNKVDKE------------SERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCF 169
            LL+G ++D               E+ +  ++G   A+E G C ++ECSA T+  ++  F
Sbjct: 125 FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184
Query: 170 EELVLKILDTP 180
           +E ++ IL TP
Sbjct: 185 DEAIIAIL-TP 194

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 96/181 (53%), Gaps = 6/181 (3%)
Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKK 61
            S A+Q E    FKL+++GD G GK++ +    +  FE+    T+GV+            
Sbjct: 1   GSMAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 60
Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           +K  +WDTAG E+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++ 
Sbjct: 61  IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENI 117
Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
             +L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+
Sbjct: 118 PIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPN 175
Query: 182 L 182
           L
Sbjct: 176 L 176

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 4/164 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K++++G+  VGKSS++  +    F ++   TIGVDF  + + V  + ++L +WDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            F  +T +YYRGAQ  ++V+  T R++F  +S  W +++   +   D    LV NK+D  
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISS-WREKV--VAEVGDIPTALVQNKIDLL 122
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
            +  +  +E    A+     F   S K  +NV + F+ L  K L
Sbjct: 123 DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 166

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 92/169 (54%), Gaps = 6/169 (3%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++GD G GK++ +    +  FE+    T+GV+            +K  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD +
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDIK 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
             +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 121 DRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 167

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ +  ++V GK+++LA+WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPII--LVGNKKDLRQ 143
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A       ++ECSAKT+  V++ FE
Sbjct: 144 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ +  ++V GK+++LA+WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRQ 143
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A       ++ECSAKT+  V++ FE
Sbjct: 144 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 95/178 (53%), Gaps = 6/178 (3%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKL 64
           A+Q E    FKL+++GD G GK++ +    +  FE+    T+GV+            +K 
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL 124
            +WDTAG E+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +
Sbjct: 62  NVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIV 118
Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
           L GNKVD +  +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 121
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 122 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 170

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 121
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 122 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 170

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 92/167 (55%), Gaps = 5/167 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGK-KLKLAIWDTAGQ 72
            K++++GD   GK+SL   F  + F ++   TIG+DF ++ + + G   + L IWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVW--AKEIDLYSTNQDCIKLLVGNKV 130
                +   Y  GAQG+++VYD+T   +F NL D +   K++   S  Q  +  LVGNK+
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVA-LVGNKI 125
Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           D E  R +  ++ + F +E G      SAKT  +V  CF+++  +IL
Sbjct: 126 DLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEIL 172

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F  +  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +       Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V   EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 124 DEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFE 172

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 13/185 (7%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKL 64
            S        K + +GD  VGK+ +L+ +TS+ F  +  PT+  +F    V V G+ + L
Sbjct: 1   GSHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGQIVNL 59
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL 124
            +WDTAGQE +  L    YRGA   ++ + +  + ++ N+   W  E+  ++ N   +  
Sbjct: 60  GLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIV-- 117
Query: 125 LVGNKVDKESER--------VVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEELVLK 175
           LVG K+D   ++        V+T  +G    ++ G   +IECS+KT+ NV+  F+  +  
Sbjct: 118 LVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKV 177
Query: 176 ILDTP 180
           +L  P
Sbjct: 178 VLQPP 182

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 95/188 (50%), Gaps = 13/188 (6%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++GD G GK++ +    +  FE+    TIGV+           ++K  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD +
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVDVK 129
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKN 193
             +V  K + I F R+    + + SAK+  N ++ F  L  K+   P L    S  L   
Sbjct: 130 ERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPAL--- 184
Query: 194 IFKQKPPE 201
                PPE
Sbjct: 185 ----APPE 188

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 15/169 (8%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++++GD G GK+SLL+ F    F E  +PT+   + V  + V GK + L IWDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQDD 94
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-----------K 123
           +  L   +Y  A  +++ +DVT  ++F N+ + W  E++ +      I           K
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDK 154
Query: 124 LLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEE 171
            LV NK+ +     VT   G   AR  G + ++ECSA+   NV   F+E
Sbjct: 155 SLV-NKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ V  ++V GK+++LA+WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLED 68
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 126
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A   G   ++ECSAKT+  V++ FE
Sbjct: 127 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 90.1 bits (222), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 6/169 (3%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++GD G GK++ +    +  FE+    T+GV+            +K  +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD +
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDIK 123
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
             +V  K + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 124 DRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 170

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ +  ++V GK+++LA+WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 65
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRQ 123
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    K  +  V  +EG + A       ++ECSAKT+  V++ FE
Sbjct: 124 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 172

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 91/176 (51%), Gaps = 15/176 (8%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
             K + +GD  VGK+ +L+S+TS+ F  +  PT+  +F    V V G  + L +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQ 64
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E +  L    YRGA   I+ + +  + ++ N++  W  E+  Y+     I  LVG K+D 
Sbjct: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII--LVGTKLDL 122
Query: 133 ESER----------VVTKKEGINFAREYGC-LFIECSAKTRVNVQQCFEELVLKIL 177
             ++           +T  +G    +  G  ++IECS+KT+ NV+  F+  +  +L
Sbjct: 123 RDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVL 178

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 6/169 (3%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++GD G GK++ +    +  FE+    TIGV+           ++K  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD +
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVDVK 122
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
             +V  K + I F R+    + + SAK+  N ++ F  L  K+   P L
Sbjct: 123 ERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 169

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 6/169 (3%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++GD G GK++ +    +  FE+    TIGV+           ++K  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD +
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVDVK 121
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
             +V  K + I F R+    + + SAK+  N ++ F  L  K+   P L
Sbjct: 122 ERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 168

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 92/181 (50%), Gaps = 4/181 (2%)
Query: 5   SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIG-VDFKVKYVDVGGKKL 62
             S +  +  +K+ +IGD GVGK++ +       FE+  + T+G V+  V ++D  G  +
Sbjct: 2   PGSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVI 61
Query: 63  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI 122
           K  +WDTAGQE+   L   YY GA G I+ +DVT R T  NL+  W KE      N+  I
Sbjct: 62  KFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLAR-WVKEFQAVVGNEAPI 120
Query: 123 KLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
            ++  NK+D ++ + ++KK  +   +     + E SAKT  N    F  L       P L
Sbjct: 121 -VVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDL 179
Query: 183 L 183
           +
Sbjct: 180 I 180

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +  L    Y     I+M + V   D+  N+ + W  E+  +  N   I  LV NK D  S
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPII--LVANKKDLRS 143
Query: 135 ERVV------TKKEGIN-------FAREYGCLFIECSAKTRVNVQQCFE 170
           +  V       K+E +          R     ++ECSAKT+  V++ FE
Sbjct: 144 DEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFE 192

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 15/176 (8%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
             K + +GD  VGK+ LL+S+TS+ F  +  PT+  +F    V V G  + L +WDTAGQ
Sbjct: 8   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQ 66
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E +  L    YRGA   I+ + +  + ++ N+S  W  E+  Y+     +  LVG K+D 
Sbjct: 67  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIV--LVGTKLDL 124
Query: 133 ESER----------VVTKKEGINFAREYGC-LFIECSAKTRVNVQQCFEELVLKIL 177
             ++           +T  +G    +  G   +IECS+K++ NV+  F+  +  +L
Sbjct: 125 RDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 3/148 (2%)
Query: 27  KSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG 85
           KS+L + F    F  +  PTI  D   K   +  +  +L I DTAGQE F  +   Y R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 86  AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN 145
            +G ++V+ VT R +F  +   + ++I       +   +L+GNK D + +R VT++EG  
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYK-FQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQ 135
Query: 146 FAREYGCLFIECSAKTRVNVQQCFEELV 173
            AR+    ++E SAK R+NV Q F ELV
Sbjct: 136 LARQLKVTYMEASAKIRMNVDQAFHELV 163

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 3/151 (1%)
Query: 27  KSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG 85
           KS+L + F    F  +  PTI  D   K   V G   +L I DTAGQE F  +   Y R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 86  AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN 145
             G ++V+ +  R +F  +  ++ + + +   + D   +LVGNK D ES+R V + E   
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD-DFPVVLVGNKADLESQRQVPRSEASA 139
Query: 146 FAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           F   +   + E SAK R+NV + FE+LV  +
Sbjct: 140 FGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 17/182 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L  P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 181 SL 182
            +
Sbjct: 181 PV 182

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 94/190 (49%), Gaps = 17/190 (8%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L  P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 181 SLLAEGSKGL 190
            +     K L
Sbjct: 181 PVKKRKRKCL 190

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 17/182 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 64
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 122
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L  P
Sbjct: 123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182
Query: 181 SL 182
            +
Sbjct: 183 PV 184

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 17/182 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 67  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 124
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L  P
Sbjct: 125 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 184
Query: 181 SL 182
            +
Sbjct: 185 PV 186

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VXIGGEPYTLGLFDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 178 DTP 180
           + P
Sbjct: 178 EPP 180

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 17/182 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L  P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 181 SL 182
            +
Sbjct: 181 PV 182

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 119
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 120 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 179
Query: 178 DTP 180
           + P
Sbjct: 180 EPP 182

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 17/182 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L  P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 181 SL 182
            +
Sbjct: 181 PV 182

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 72
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 73  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 127
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 128 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 187
Query: 178 DTP 180
           + P
Sbjct: 188 EPP 190

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K+ ++G   VGKSSL + F    F +   PTI   F  K + V G++  L + DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +     +Y     G I+VY VT   +F  +  +  K +D+    Q  I +LVGNK D   
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKDLHM 125
Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLK 175
           ERV++ +EG   A  +   F+E SAK        F  ++L+
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 120
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 121 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 180
Query: 178 DTP 180
           + P
Sbjct: 181 EPP 183

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 178 DTP 180
           + P
Sbjct: 178 EPP 180

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 120
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 121 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 180
Query: 178 DTP 180
           + P
Sbjct: 181 EPP 183

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 63
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 64  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 118
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 119 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 178
Query: 178 DTP 180
           + P
Sbjct: 179 EPP 181

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 178 DTP 180
           + P
Sbjct: 178 EPP 180

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 178 DTP 180
           + P
Sbjct: 178 EPP 180

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 124
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 125 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 184
Query: 178 DTP 180
           + P
Sbjct: 185 EPP 187

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 124
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 125 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 184
Query: 178 DTP 180
           + P
Sbjct: 185 EPP 187

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K+ ++G   VGKSSL + F    F +   PTI   F  K + V G++  L + DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +     +Y     G I+VY VT   +F  +  +  K +D+    Q  I +LVGNK D   
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKDLHM 125
Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLK 175
           ERV++ +EG   A  +   F+E SAK        F  ++L+
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 178 DTP 180
           + P
Sbjct: 178 EPP 180

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K+ ++G   VGKSSL + F    F +   PTI   F  K + V G++  L + DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +     +Y     G I+VY VT   +F  +  +  K +D+    Q  I +LVGNK D   
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKDLHM 120
Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLK 175
           ERV++ +EG   A  +   F+E SAK        F  ++L+
Sbjct: 121 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 161

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K+ ++G   VGKSSL + F    F +   PTI   F  K + V G++  L + DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +     +Y     G I+VY VT   +F  +  +  K +D+    Q  I +LVGNK D   
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKDLHM 123
Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLK 175
           ERV++ +EG   A  +   F+E SAK        F  ++L+
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 95/200 (47%), Gaps = 43/200 (21%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGK------------- 60
           +K +++G+S VGKSS++L  T D F E  + TIG  F    V++                
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 61  ------------------------KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT 96
                                    +K  IWDTAGQER+ ++   YYRGA   I+V+D++
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 97  RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIE 156
             +T  + +  W  ++ + S   + I +LV NK+DK   + V   E   +A++   LFI+
Sbjct: 128 NSNTL-DRAKTWVNQLKISS---NYIIILVANKIDKNKFQ-VDILEVQKYAQDNNLLFIQ 182
Query: 157 CSAKTRVNVQQCFEELVLKI 176
            SAKT  N++  F  L  +I
Sbjct: 183 TSAKTGTNIKNIFYMLAEEI 202

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 15/172 (8%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
             K + +GD  VGK+ +L+S+T + F  +  PT+  +F    V V G  + L +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E +  L    YRGA   ++ + +  + ++ N+   W  E+  Y+     +  LVG K+D 
Sbjct: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIV--LVGTKLDL 122
Query: 133 ESER----------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELV 173
             ++           +T  +G    +  G + ++ECS+KT+ NV+  F+  +
Sbjct: 123 RDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAI 174

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 81
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 139
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L
Sbjct: 140 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 196

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 89
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 147
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 69
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 127
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L
Sbjct: 128 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 184

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 72
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 73  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 130
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L
Sbjct: 131 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 187

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 92/169 (54%), Gaps = 17/169 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+  +   F E+  PT+  ++ V  V+V G++++LA+WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENY-VADVEVDGRRVELALWDTAGQED 70
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y  +  +++ + +   D+  N+ + W  E+  +   Q    +LVG KVD   
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFC--QGVPIILVGCKVDLRN 128
Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFE 170
                    +E ++ VT +EG + A + G   + ECSAKT   V++ FE
Sbjct: 129 DPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFE 177

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 63
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  +     LLVG K+D  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLDLR 121
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  ARE G + ++ECSA T+  ++  F+E +  +L
Sbjct: 122 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 63
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  +     LLVG K+D  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLDLR 121
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  ARE G + ++ECSA T+  ++  F+E +  +L
Sbjct: 122 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  +     LLVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLDLR 120
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  ARE G + ++ECSA T+  ++  F+E +  +L
Sbjct: 121 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 17/182 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGLE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L  P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 181 SL 182
            +
Sbjct: 181 PV 182

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 17/182 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGLE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L  P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 181 SL 182
            +
Sbjct: 181 PV 182

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 5   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     ++D   +LVGNK D  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKSDLP 122
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           S R V  K+  + AR YG  FIE SAKTR  V   F  LV +I
Sbjct: 123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 5   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     ++D   +LVGNK D  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKSDLP 122
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           S R V  K+  + AR YG  FIE SAKTR  V   F  LV +I
Sbjct: 123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 11/179 (6%)
Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFK--VKYVDV 57
           M++ +   +      K++++GD  VGK+ LLL+F+         PT+  +F   +KY + 
Sbjct: 10  MNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKN- 68
Query: 58  GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST 117
             ++  L +WDTAGQE +  L    Y  +  +++ + V  R +F N+S  W  EI  Y  
Sbjct: 69  --EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID 126
Query: 118 NQDCIKLLVGNKVD--KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELV 173
               +  LVG KVD  K+    VTK+EG +  ++ GC+ +IE S+  ++ + + FE+ V
Sbjct: 127 TAKTV--LVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSV 183

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 17/173 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELV 173
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 178 D 178
           +
Sbjct: 178 E 178

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 90/165 (54%), Gaps = 11/165 (6%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFK--VKYVDVGGKKLKLAIWDTAG 71
            K++++GD  VGK+ LLL+F+         PT+  +F   +KY +   ++  L +WDTAG
Sbjct: 23  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKN---EEFILHLWDTAG 79
Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           QE +  L    Y  +  +++ + V  R +F N+S  W  EI  Y      +  LVG KVD
Sbjct: 80  QEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV--LVGLKVD 137
Query: 132 --KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELV 173
             K+    VTK+EG +  ++ GC+ +IE S+  ++ + + FE+ V
Sbjct: 138 LRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSV 182

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 121
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 122 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 181
Query: 178 D 178
           +
Sbjct: 182 E 182

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 178 DTP 180
           + P
Sbjct: 178 EPP 180

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 119
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 120 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 179
Query: 178 D 178
           +
Sbjct: 180 E 180

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 178 D 178
           +
Sbjct: 178 E 178

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 23/183 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 66
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 121
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 122 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 181
Query: 178 DTP 180
           + P
Sbjct: 182 EPP 184

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177
Query: 178 D 178
           +
Sbjct: 178 E 178

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++    E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 89
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 147
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 90/180 (50%), Gaps = 23/180 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 17/181 (9%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGL 213
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E +  L    Y      ++ + +    +F ++   W  E+  +  N   I  LVG K+D 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII--LVGTKLDL 271
Query: 133 ESER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDT 179
             ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L  
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
Query: 180 P 180
           P
Sbjct: 332 P 332

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 17/181 (9%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGL 213
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E +  L    Y      ++ + +    +F ++   W  E+  +  N   I  LVG K+D 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII--LVGTKLDL 271
Query: 133 ESER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDT 179
             ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L  
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
Query: 180 P 180
           P
Sbjct: 332 P 332

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 17/181 (9%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGL 213
Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E +  L    Y      ++ + +    +F ++   W  E+  +  N   I  LVG K+D 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII--LVGTKLDL 271
Query: 133 ESER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDT 179
             ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L  
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
Query: 180 P 180
           P
Sbjct: 332 P 332

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGLE 65
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 123
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L
Sbjct: 124 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 180

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 2/160 (1%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +++ + G  GVGKSSL+L F    F E   PT+   ++ + +        L I DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  +           I+VY +T R +   L  ++ +  ++    +    +LVGNK D+ 
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
             R V   E    AR + C F+E SAK   NV++ F+EL+
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 80
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     ++D   +LVGNK D  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLP 139
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           S R V  K+  + AR YG  FIE SAKTR  V   F  LV +I
Sbjct: 140 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAG E
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGLE 89
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 147
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 99/196 (50%), Gaps = 19/196 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKN 193
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I              +  
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI-------------RQHK 167
Query: 194 IFKQKPPEADAAASGC 209
           + K  PP  D +  GC
Sbjct: 168 LRKLNPP--DESGPGC 181

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 91/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++ +++ ++I     + D   +LVGNK D  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLP 139
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  K+    A+ YG  FIE SAKTR  V+  F  LV +I
Sbjct: 140 T-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 90/181 (49%), Gaps = 23/181 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ V  V +GG+   L + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLRDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 178 D 178
           +
Sbjct: 178 E 178

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 90/181 (49%), Gaps = 23/181 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  P +  ++ V  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 178 D 178
           +
Sbjct: 178 E 178

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 9   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 125
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 126 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 125
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 126 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 90/181 (49%), Gaps = 23/181 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++    E  PT+  ++ V  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK---LLVGNKV 130
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           D            K  ++ +T +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 178 D 178
           +
Sbjct: 178 E 178

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 11  YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 69
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 70  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 127
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 128 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F E+  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 36/201 (17%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V GK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 64
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRD-------------------TFTNLSDVWAKEIDL 114
            +  L    Y    G     D+T R                    +F N+   W  E+  
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 115 YSTNQDCIKLLVGNKVDKESER------------VVTKKEGINFAREYGCL-FIECSAKT 161
           +  N   I  LVG K+D   ++             +T  +G+  A+E G + ++ECSA T
Sbjct: 125 HCPNTPII--LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 182
Query: 162 RVNVQQCFEELVLKILDTPSL 182
           +  ++  F+E +  +L  P +
Sbjct: 183 QRGLKTVFDEAIRAVLCPPPV 203

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 88/152 (57%), Gaps = 3/152 (1%)
Query: 26  GKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR 84
           GKS+L + F +  F E+  PTI  DF  K ++V      L I DTAG E+F ++   Y +
Sbjct: 15  GKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIK 73
Query: 85  GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGI 144
             QG I+VY +  + +F ++  +  + I +    +  + +LVGNKVD ESER V+  EG 
Sbjct: 74  NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPV-ILVGNKVDLESEREVSSSEGR 132
Query: 145 NFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
             A E+GC F+E SAK++  V + F E+V ++
Sbjct: 133 ALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGEICLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  P+I   ++ K V + G+   L I DTAGQE
Sbjct: 10  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 68
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 69  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 126
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 127 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGN+ D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNRCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 3/162 (1%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++++G   VGK+SL   F    F E   PT+   +  K V +G  +  L + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAGQDE 84
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +  L  S+  G  G ++VY VT   +F  +  ++ K  + +   +  + +LVGNK D   
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPV-VLVGNKADLSP 143
Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ER V   EG   A  +G  F+E SA+     Q  F +++ +I
Sbjct: 144 EREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  P+I   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 88/160 (55%), Gaps = 4/160 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGK++L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKXDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DT GQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKXDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DT GQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAG+E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGKE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
               +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F ++  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 5/163 (3%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL + G +GVGKS+L++ F +  F  E  PT+   ++ +   +  + + + I DTAGQE 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQ-ATIDDEVVSMEILDTAGQED 88
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
                  + R  +G ++VYD+T R +F  +  +    +D     ++   +LVGNK D + 
Sbjct: 89  -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPL-KNILDEIKKPKNVTLILVGNKADLDH 146
Query: 135 ERVVTKKEGINFAREYGCLFIECSAKT-RVNVQQCFEELVLKI 176
            R V+ +EG   A E  C F ECSA T   N+ + F EL  ++
Sbjct: 147 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETXLLDILDTAGGE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 67
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 125
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 126 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGGE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 17/173 (9%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K +++GD  VGK+SL++S+T++ +  E  PT   +F    V V G+ ++L + DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSA-VVSVDGRPVRLQLCDTAGQDE 80
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK----- 129
           F  L    Y      ++ + V    +F N+S+ W  EI  +      I  LVG +     
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPII--LVGTQSDLRE 138
Query: 130 -------VDKESERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEELVL 174
                  +DK  E+ V ++     A E     +IECSA T+ N+++ F+  ++
Sbjct: 139 DVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIV 191

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 93/173 (53%), Gaps = 4/173 (2%)
Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
           ++SA   E    +KL+++GD GVGKS+L + F    F  E  PTI  D  +K+ ++  + 
Sbjct: 7   ATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIE-DSYLKHTEIDNQW 65
Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
             L + DTAGQE F  +   Y R   G ++VY VT + +F ++ D + + I      +  
Sbjct: 66  AILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESF 124
Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK-TRVNVQQCFEELV 173
             +LV NKVD    R VT+ +G   A +Y   +IE SAK   +NV + F +LV
Sbjct: 125 PMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 94/173 (54%), Gaps = 4/173 (2%)
Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
           ++SA   E    +KL+++GD GVGKS+L + F    F +E  PTI   ++ K+ ++  + 
Sbjct: 7   ATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYR-KHTEIDNQW 65
Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
             L + DTAGQE F  +   Y R   G ++VY VT + +F ++ D + + I      +  
Sbjct: 66  AILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESF 124
Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK-TRVNVQQCFEELV 173
             +LV NKVD    R VT+ +G   A +Y   +IE SAK   +NV + F +LV
Sbjct: 125 PMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V  K + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDSKPVNLGLWDTAGQE 62
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    ++ N+   W  E+  +  +   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII--LVGTKLDLR 120
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E   + ++ECSA T+  ++  F+E +  +L
Sbjct: 121 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 94/173 (54%), Gaps = 4/173 (2%)
Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
           ++SA   E    +KL+++GD GVGKS+L + F    F ++  PTI  D  +K+ ++  + 
Sbjct: 7   ATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQW 65
Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
             L + DTAGQE F  +   Y R   G ++VY VT + +F ++ D + + I      +  
Sbjct: 66  AILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESF 124
Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK-TRVNVQQCFEELV 173
             +LV NKVD    R VT+ +G   A +Y   +IE SAK   +NV + F +LV
Sbjct: 125 PMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V  K + L +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDSKPVNLGLWDTAGQE 68
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    ++ N+   W  E+  +  +   I  LVG K+D  
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII--LVGTKLDLR 126
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E   + ++ECSA T+  ++  F+E +  +L
Sbjct: 127 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 183

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 17/177 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++    V V  K + L +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDSKPVNLGLWDTAGQE 69
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + +    ++ N+   W  E+  +  +   I  LVG K+D  
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII--LVGTKLDLR 127
Query: 134 SER------------VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
            ++             +T  +G+  A+E   + ++ECSA T+  ++  F+E +  +L
Sbjct: 128 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 184

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 4/173 (2%)
Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
           ++SA   E    +KL+++GD GVGKS+L + F    F  +  PTI  D  +K+ ++  + 
Sbjct: 2   ATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQW 60
Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
             L + DTAGQE F  +   Y R   G ++VY VT + +F ++ D + + I      +  
Sbjct: 61  AILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESF 119
Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK-TRVNVQQCFEELV 173
             +LV NKVD    R VT+ +G   A +Y   +IE SAK   +NV + F +LV
Sbjct: 120 PMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 172

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 7/161 (4%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           L++++++GD GVGK+SL   F      +L   +G D   + + V G+   L + DT   E
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63
Query: 74  RFRTLTS--SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ-DCIKL-LVGNK 129
           +     S  S  +G    ++VY +  R +F + S++    I L  T+Q D + + LVGNK
Sbjct: 64  KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASEL---RIQLRRTHQADHVPIILVGNK 120
Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170
            D    R V+ +EG   A  + C FIE SA  + NV + FE
Sbjct: 121 ADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 81/158 (51%), Gaps = 17/158 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++++GDS  GK++LL  F  D F E   PT+  ++   + ++  ++++L++WDT+G   
Sbjct: 25  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 83
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  +    Y  +  +++ +D++R +T  ++   W  EI  +  N     LLVG K D   
Sbjct: 84  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRT 141
Query: 132 ---------KESERVVTKKEGINFAREYG-CLFIECSA 159
                       +  V+  +G N A++ G   +IECSA
Sbjct: 142 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 179

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 81/158 (51%), Gaps = 17/158 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++++GDS  GK++LL  F  D F E   PT+  ++   + ++  ++++L++WDT+G   
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 88
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  +    Y  +  +++ +D++R +T  ++   W  EI  +  N     LLVG K D   
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRT 146
Query: 132 ---------KESERVVTKKEGINFAREYG-CLFIECSA 159
                       +  V+  +G N A++ G   +IECSA
Sbjct: 147 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 184

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 81/158 (51%), Gaps = 17/158 (10%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++++GDS  GK++LL  F  D F E   PT+  ++   + ++  ++++L++WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 67
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  +    Y  +  +++ +D++R +T  ++   W  EI  +  N     LLVG K D   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRT 125
Query: 132 ---------KESERVVTKKEGINFAREYG-CLFIECSA 159
                       +  V+  +G N A++ G   +IECSA
Sbjct: 126 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 3/148 (2%)
Query: 27  KSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG 85
           KSSL+L F    F +   PTI   ++ + +        L I DT G  +F  +       
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 86  AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN 145
               I+V+ VT + +   L  ++   + +  + +D   +LVGNK D E++R V  +E   
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQA 138
Query: 146 FAREYGCLFIECSAKTRVNVQQCFEELV 173
            A+E+ C F+E SAK   NV++ F+EL+
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELFQELL 166

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           ++K+L++G  GVGKS+L   F        +   G  +    V V G++  L ++D   Q+
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIV-VDGEEASLMVYDIWEQD 65
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVGNKVD 131
             R L           ++VY VT + +F   S++    + L    Q  D   +LVGNK D
Sbjct: 66  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSD 122
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
               R V+  EG   A  + C FIE SA    NVQ  FE +V +I
Sbjct: 123 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 6/165 (3%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           ++K+L++G  GVGKS+L   F        +   G  +  + + V G++  L ++D   Q+
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 65
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVGNKVD 131
             R L           ++VY VT + +F   S++    + L    Q  D   +LVGNK D
Sbjct: 66  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSD 122
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
               R V+  EG   A  + C FIE SA    NVQ  FE +V +I
Sbjct: 123 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 12/169 (7%)
Query: 15  FKLLMIGDSGVGKSSL--LLSFTSDNFEELSPTIGVDFKVKYVDVGGKK---LKLAIWDT 69
           +++++IG+ GVGKS+L  + +   D+ +     +G D   + + V G+    + L +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVG 127
            G+  +  L     +     ++VY +T R +F   S++    I L    Q  D   +LVG
Sbjct: 67  KGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQTEDIPIILVG 121
Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           NK D    R V+  EG   A  + C FIE SA  + NV++ FE +V ++
Sbjct: 122 NKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 6/165 (3%)
Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           ++K+L++G  GVGKS+L   F        +   G  +  + + V G++  L ++D   Q+
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 60
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVGNKVD 131
             R L           ++VY VT + +F   S++    + L    Q  D   +LVGNK D
Sbjct: 61  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSD 117
Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
               R V+  EG   A  + C FIE SA    NVQ  FE +V +I
Sbjct: 118 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 15/165 (9%)
Query: 17  LLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           L ++G  G GKS+L + F +  F  E  P +   +  +   V  + + L + DTA  +  
Sbjct: 24  LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEET-VDHQPVHLRVMDTADLDTP 82
Query: 76  RTLTSSYYRGAQGIIMVYDV------TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           R     Y   A   ++VY V          ++  L  + AKE     T +    LL+GNK
Sbjct: 83  RN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKE-----TQRSIPALLLGNK 136
Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRV-NVQQCFEELV 173
           +D    R VTK EG+  A  +GCLF E SA     +VQ  F E V
Sbjct: 137 LDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 7/173 (4%)
Query: 8   QQEFDYLFKLLMIGDSGVGKSSLLLSF---TSDNFEELSPTIGVDFKVKYVDVGGKKLKL 64
           Q + D +FK++++G+SGVGKS+L  +F     D+  E  P    D   + + V  +++ L
Sbjct: 17  QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHE--PENPEDTYERRIMVDKEEVTL 74
Query: 65  AIWDTAGQ-ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
            ++D   Q +    L     +     ++V+ VT R +F+ + +   + +     + D   
Sbjct: 75  VVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPV 133
Query: 124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           +LVGNK D    R V+ +EG + A    C  IE SA    N ++ FE  V +I
Sbjct: 134 ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 12  DYLFKLLMIGDSGVGKSSLLLSF---TSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           D +FK++++G+SGVGKS+L  +F     DN  E+  +   D   + + V  +++ L ++D
Sbjct: 10  DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENS--EDTYERRIMVDKEEVTLIVYD 67
Query: 69  TAGQ-ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
              Q +    L     +     ++V+ VT R +F+ + +   + +     + D   +LVG
Sbjct: 68  IWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPVILVG 126
Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           NK D    R V+ +EG + A    C  IE SA    N ++ FE  V +I
Sbjct: 127 NKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 12/180 (6%)
Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSL--LLSFTSDNFEELSPTIGVDFKVKYVDVGGKK 61
           S  S +  +  +++++IG+ GVGKS+L  + +   D+ +     +G D   + + V G+ 
Sbjct: 27  SVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGES 86
Query: 62  ---LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTN 118
              + L +W+  G+  +  L     +     ++VY +T R +F   S++    I L    
Sbjct: 87  ATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRAR 141
Query: 119 Q--DCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           Q  D   +LVGNK D    R V+  EG   A  + C FIE SA  + NV++ FE +V ++
Sbjct: 142 QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 12/169 (7%)
Query: 15  FKLLMIGDSGVGKSSL--LLSFTSDNFEELSPTIGVDFKVKYVDVGGKK---LKLAIWDT 69
           +++++IG+ GVGKS+L  + +   D+ +     +G D   + + V G+    + L +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVG 127
            G+  +  L     +     ++VY +T R +F   S++    I L    Q  D   +LVG
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQTEDIPIILVG 121
Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           NK D    R V+  EG   A  + C FIE SA  + NV++ FE +V ++
Sbjct: 122 NKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 17/154 (11%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G  G GK+++L            PTIG  F V+ V    K +   +WD  GQ+R
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIG--FNVETVQY--KNISFTVWDVGGQDR 56
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK----LLVGNKV 130
            R+L   YYR  +G+I V D   R          A+E+     N+D ++    L+  NK 
Sbjct: 57  IRSLWRHYYRNTEGVIFVVDSNDRSRIGE-----AREVMQRMLNEDELRNAAWLVFANKQ 111
Query: 131 D---KESERVVTKKEGINFAREYGCLFIECSAKT 161
           D     S   +T+K G++  R     FI+ +  T
Sbjct: 112 DLPEAMSAAEITEKLGLHSIRNR-PWFIQATCAT 144

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 17/154 (11%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G  G GK+++L            PTIG  F V+ V    K +   +WD  GQ+R
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIG--FNVETVQY--KNISFTVWDVGGQDR 73
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK----LLVGNKV 130
            R+L   YYR  +G+I V D   R          A+E+     N+D ++    L+  NK 
Sbjct: 74  IRSLWRHYYRNTEGVIFVVDSNDRSRIGE-----AREVMQRMLNEDELRNAAWLVFANKQ 128
Query: 131 D---KESERVVTKKEGINFAREYGCLFIECSAKT 161
           D     S   +T+K G++  R     FI+ +  T
Sbjct: 129 DLPEAMSAAEITEKLGLHSIRNR-PWFIQATCAT 161

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 17/154 (11%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G  G GK+++L            PTIG  F V+ V    K +   +WD  GQ+R
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIG--FNVETVQY--KNISFTVWDVGGQDR 73
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD----CIKLLVGNKV 130
            R+L   YYR  +G+I V D   R          A+E+     N+D     + L+  NK 
Sbjct: 74  IRSLWRHYYRNTEGVIFVIDSNDRSRIGE-----AREVMQRMLNEDELRNAVWLVFANKQ 128
Query: 131 D---KESERVVTKKEGINFAREYGCLFIECSAKT 161
           D     S   +T+K G++  R     FI+ +  T
Sbjct: 129 DLPEAMSAAEITEKLGLHSIRNR-PWFIQSTCAT 161

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PTIG  F V+ V+   K +   +WD  GQ+R
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNICFTVWDVGGQDR 73
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
            R L   Y++  QG+I V D   R+    ++D   K + L    +D + LL  NK D
Sbjct: 74  IRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKML-LVDELRDAVLLLFANKQD 129

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 83/167 (49%), Gaps = 7/167 (4%)
Query: 14  LFKLLMIGDSGVGKSSLLLSF---TSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           +FK++++G+SGVGKS+L  +F     D+  E+  +   D   + + V  +++ L ++D  
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENS--EDTYERRIMVDKEEVTLIVYDIW 59
Query: 71  GQ-ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
            Q +    L     +     ++V+ VT R +F+ + +   + +     + D   +LVGNK
Sbjct: 60  EQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPVILVGNK 118
Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            D    R V+ +EG + A    C  IE SA    N ++ FE  V +I
Sbjct: 119 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 12/169 (7%)
Query: 15  FKLLMIGDSGVGKSSL--LLSFTSDNFEELSPTIGVDFKVKYVDVGGKK---LKLAIWDT 69
           +++++IG+ GVGKS+L  + +   D+ +     +G D   + + V G+    + L +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ--DCIKLLVG 127
            G+  +  L     +     ++VY +T R +F   S++    I L    Q  D   +LVG
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQTEDIPIILVG 121
Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           NK D    R V+  EG   A  +   FIE SA  + NV++ FE +V ++
Sbjct: 122 NKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PT+G  F V+ V    K +K  +WD  GQ++
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 378
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 379 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 434

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+++L     D + E   PT+  ++    ++   ++++L++WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 70
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  +    Y  +  +++ +D++R +T  +    W  EI  Y  +     LL+G K D   
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR--VLLIGCKTDLRT 128
Query: 132 ---------KESERVVTKKEGINFAREYGC-LFIECSAKT-RVNVQQCFEELVLKILDTP 180
                     + +  ++ ++G   A++ G  +++E SA T   ++   F    +  L+ P
Sbjct: 129 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 188
Query: 181 SLLAEGSK 188
           S L + S 
Sbjct: 189 SPLPQKSP 196

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           +LLM+G    GK+++L  F  ++ + +SPT+G  F +K ++  G   KL IWD  GQ+ 
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDIDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKS 72
Query: 75 FRTLTSSYYRGAQGIIMVYDVTRR 98
           R+   +Y+    G+I V D   R
Sbjct: 73 LRSYWRNYFESTDGLIWVVDSADR 96

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+++L     D + E   PT+  ++    ++   ++++L++WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 71
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  +    Y  +  +++ +D++R +T  +    W  EI  Y  +     LL+G K D   
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR--VLLIGCKTDLRT 129
Query: 132 ---------KESERVVTKKEGINFAREYGC-LFIECSAKT-RVNVQQCFEELVLKILDTP 180
                     + +  ++ ++G   A++ G  +++E SA T   ++   F    +  L+ P
Sbjct: 130 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 189
Query: 181 SLLAEGSK 188
           S L + S 
Sbjct: 190 SPLPQKSP 197

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+++L     D + E   PT+  ++    ++   ++++L++WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 87
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  +    Y  +  +++ +D++R +T  +    W  EI  Y  +     LL+G K D   
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV--LLIGCKTDLRT 145
Query: 132 ---------KESERVVTKKEGINFAREYGC-LFIECSAKT-RVNVQQCFEELVLKILDTP 180
                     + +  ++ ++G   A++ G  +++E SA T   ++   F    +  L+ P
Sbjct: 146 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205
Query: 181 SLLAEGSK 188
           S L + S 
Sbjct: 206 SPLPQKSP 213

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           +LLM+G    GK+++L  F  ++ + +SPT+G  F +K ++  G   KL IWD  GQ+ 
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKS 74
Query: 75 FRTLTSSYYRGAQGIIMVYDVTRR 98
           R+   +Y+    G+I V D   R
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADR 98

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           +LLM+G    GK+++L  F  ++ + +SPT+G  F +K ++  G   KL IWD  GQ+ 
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKS 74
Query: 75 FRTLTSSYYRGAQGIIMVYDVTRR 98
           R+   +Y+    G+I V D   R
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADR 98

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 14/160 (8%)
Query: 11  FDYLF-----KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLA 65
           F+ LF     ++LM+G    GK+++L            PTIG  F V+ V+   + +   
Sbjct: 9   FNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIG--FNVETVEF--RNISFT 64
Query: 66  IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLL 125
           +WD  GQ++ R L   YY    G+I V D   R+   +  +   + I+     +D I L+
Sbjct: 65  VWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEEL-KDAIILV 123
Query: 126 VGNKVD---KESERVVTKKEGINFAREYGCLFIECSAKTR 162
             NK D     S   VT+K  +N  RE    FI+ +  TR
Sbjct: 124 FANKQDLPNAMSAAEVTEKLHLNTIRERNW-FIQSTCATR 162

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+S+L            PTIG  F V+ V+   K +   +WD  GQ++
Sbjct: 18  MRILMVGLDAAGKTSILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD----CIKLLVGNKV 130
            R L   YY+  Q II V D   RD         A+E  +   N+D     I L+  NK 
Sbjct: 74  IRPLWRHYYQNTQAIIFVVDSNDRDRIGE-----AREELMKMLNEDEMRNAILLVFANKH 128
Query: 131 D 131
           D
Sbjct: 129 D 129

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PT+G  F V+ V    K +K  +WD  GQ++
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 69
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 70  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 125

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PT+G  F V+ V    K +K  +WD  GQ++
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 68
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 69  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 124

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PT+G  F V+ V    K +K  +WD  GQ++
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 56
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 112

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PT+G  F V+ V    K +K  +WD  GQ++
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 56
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 112

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PTIG  F V+ V+   K +   +WD  GQ++
Sbjct: 21  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 76
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
            R L   Y++  QG+I V D   RD      D   + ++     +D + L+  NK D
Sbjct: 77  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN-EDELRDAVLLVFANKQD 132

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
          + +LLM+G    GK+++L  F  ++ + +SPT+G  F +K ++  G   KL IWD  G +
Sbjct: 1  MLRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG--FNIKTLEHRG--FKLNIWDVGGLK 56
Query: 74 RFRTLTSSYYRGAQGIIMVYDVTRR 98
            R+   +Y+    G+I V D   R
Sbjct: 57 SLRSYWRNYFESTDGLIWVVDSADR 81

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 8/137 (5%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PTIG  F V+ V+   K +   +WD  GQ++
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNICFTVWDVGGQDK 85
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
            R L   Y++  QG+I V D   R+     +D   K +      +D + L+  NK D  +
Sbjct: 86  IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQ-EDELRDAVLLVFANKQDMPN 144
Query: 135 ERVV---TKKEGINFAR 148
              V   T K G+   R
Sbjct: 145 AMPVSELTDKLGLQHLR 161

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 19/155 (12%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFK-VKYVDVGGKKLKLAIWDTAGQE 73
            ++LM+G  G GK+++L            PTIG + + V+Y ++        +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYCNI-----SFTVWDVGGQD 72
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD----CIKLLVGNK 129
           R R+L   YY   +G+I V D   R          A+E+     N+D       L+  NK
Sbjct: 73  RIRSLWRHYYCNTEGVIFVVDSNDRSRIGE-----AREVMQRMLNEDELCNAAWLVFANK 127
Query: 130 VD---KESERVVTKKEGINFAREYGCLFIECSAKT 161
            D     S   +T+K G++  R     FI+ +  T
Sbjct: 128 QDLPEAMSAAEITEKLGLHSIRNRP-WFIQATCAT 161

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 11/157 (7%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            +L ++G    GK++ +    S  F E++ PT+G  F ++ V  G   +K  IWD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQP 78
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFR++   Y RG   I+ + D   R+      +     +D     Q    L++GNK D  
Sbjct: 79  RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL-QGIPVLVLGNKRDLP 137
Query: 134 S---ERVVTKKEGINFA--REYGCLFIECSAKTRVNV 165
           +   E+ + +K  ++    RE  C  I C  K  +++
Sbjct: 138 NALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDI 174

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 5   SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKL 64
           SA  QE     ++L++G    GK++LL    S++   ++PT G  F +K V   G   KL
Sbjct: 12  SAPDQEV----RILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQSQG--FKL 63
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTF 101
            +WD  GQ + R    SY+     +I V D   R  F
Sbjct: 64  NVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRF 100

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 5   SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKL 64
           SA  QE     ++L++G    GK++LL    S++   ++PT G  F +K V   G   KL
Sbjct: 11  SAPDQEV----RILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQSQG--FKL 62
Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTF 101
            +WD  GQ + R    SY+     +I V D   R  F
Sbjct: 63  NVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRF 99

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           ++L +G    GK+++L            PT+G  F V+ V    K +K  +WD  GQ++ 
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDKI 57
Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 58  RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIN-DREXRDAIILIFANKQD 112

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PTIG  F V+ V+   K +   +WD  GQ++
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 221
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRD 99
            R L   Y++  QG+I V D   R+
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDRE 246

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PT+G  F V+ V    K +K  +WD  G ++
Sbjct: 4   MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGLDK 59
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 60  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 115

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PT+G  F V+ V    K +K  +WD  G ++
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGLDK 69
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 70  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 125

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PT+G  F V+ V    K +K  +WD  G ++
Sbjct: 3   MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGLDK 58
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 59  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 114

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           ++LM+G    GK+++L            PTIG  F V+ V+   K +   +WD  GQ++
Sbjct: 1  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 56
Query: 75 FRTLTSSYYRGAQGIIMVYDVTRRD 99
           R L   Y++  QG+I V D   R+
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRE 81

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           ++LM+G    GK+++L            PTIG  F V+ V+   K +   +WD  GQ++
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 72
Query: 75 FRTLTSSYYRGAQGIIMVYDVTRRD 99
           R L   Y++  QG+I V D   R+
Sbjct: 73 IRPLWRHYFQNTQGLIFVVDSNDRE 97

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           ++LM+G    GK+++L            PTIG  F V+ V+   K +   +WD  GQ++
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
Query: 75 FRTLTSSYYRGAQGIIMVYDVTRRD 99
           R L   Y++  QG+I V D   R+
Sbjct: 74 IRPLWRHYFQNTQGLIFVVDSNDRE 98

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 11/121 (9%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++L++G  G GK+++L            PTIG  F V+ +    K LKL +WD  GQ  
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTTKPTIG--FNVETLSY--KNLKLNVWDLGGQTS 74
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTN---QDCIKLLVGNKVD 131
            R     YY     +I V D T +D  +  S    KE+ L       QD   L+  NK D
Sbjct: 75  IRPYWRCYYADTAAVIFVVDSTDKDRMSTAS----KELHLMLQEEELQDAALLVFANKQD 130
Query: 132 K 132
           +
Sbjct: 131 Q 131

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           ++L++G    GK++LL    S++   ++PT G  F +K V   G   KL +WD  GQ + 
Sbjct: 6   RILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKI 61
Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTF 101
           R    SY+     +I V D   R  F
Sbjct: 62  RPYWRSYFENTDILIYVIDSADRKRF 87

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLA 65
            S QE     K++++G    GK+++L  F+ +     SPTIG + +   ++      +  
Sbjct: 18  GSHQEH----KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVIN----NTRFL 69
Query: 66  IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD 99
           +WD  GQE  R+  ++YY   + +I+V D T R+
Sbjct: 70  MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 103

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
          K++++G    GK+++L  F+ +     SPTIG + +    ++     +  +WD  GQE  
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQESL 73
Query: 76 RTLTSSYYRGAQGIIMVYDVTRRD 99
          R+  ++YY   + +I+V D T R+
Sbjct: 74 RSSWNTYYTNTEFVIVVVDSTDRE 97

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
          K++++G    GK+++L  F+ +     SPTIG + +    ++     +  +WD  GQE  
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQESL 73
Query: 76 RTLTSSYYRGAQGIIMVYDVTRRD 99
          R+  ++YY   + +I+V D T R+
Sbjct: 74 RSSWNTYYTNTEFVIVVVDSTDRE 97

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            K++++G    GK+++L  F+ +     SPTIG + +   ++      +  +WD  GQE 
Sbjct: 22  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVIN----NTRFLMWDIGGQES 77
Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRD 99
            R+  ++YY   + +I+V D T R+
Sbjct: 78  LRSSWNTYYTNTEFVIVVVDSTDRE 102

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
          K++++G    GK+++L  F  +     SPTIG + +    ++  K     +WD  GQE  
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVE----EIVVKNTHFLMWDIGGQESL 73
Query: 76 RTLTSSYYRGAQGIIMVYDVTRRD 99
          R+  ++YY   + II+V D   R+
Sbjct: 74 RSSWNTYYSNTEFIILVVDSIDRE 97

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 19/161 (11%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            +L ++G    GK++ +    S  F E++ PT+G  F ++ +  G   +KL  WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 78
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD-- 131
           RFR++   Y RG   I+ + D   ++      +     +D     Q    L++GNK D  
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL-QGIPVLVLGNKRDLP 137
Query: 132 ---KESERVVTKKEGINFA----REYGCLFIECSAKTRVNV 165
               E E +    E +N +    RE  C  I C  K  +++
Sbjct: 138 GALDEKELI----EKMNLSAIQDREICCYSISCKEKDNIDI 174

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 25 VGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR 84
           GK+++L  F  ++ + +SPT+G  F +K ++  G   KL IWD  GQ+  R+   +Y+ 
Sbjct: 29 AGKTTILKKFNGEDVDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFE 84
Query: 85 GAQGIIMVYDVTRR 98
             G+I V D   R
Sbjct: 85 STDGLIWVVDSADR 98

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 11/157 (7%)
Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            +L ++G    GK++ +    S  F E++ PT+G  F ++ +  G   +KL  WD  GQ 
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 87
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFR++   Y RG   I+ + D   ++      +     +D     Q    L++GNK D  
Sbjct: 88  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLD-KPQLQGIPVLVLGNKRDLP 146
Query: 134 S---ERVVTKKEGINFA--REYGCLFIECSAKTRVNV 165
               E+ + +K  ++    RE  C  I C  K  +++
Sbjct: 147 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 183

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           ++LM+G    GK+++L            PTIG  F V+ V+   K +   +WD  G ++
Sbjct: 3  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGLDK 58
Query: 75 FRTLTSSYYRGAQGIIMVYDVTRRD 99
           R L   Y++  QG+I V D   R+
Sbjct: 59 IRPLWRHYFQNTQGLIFVVDSNDRE 83

>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           ++L++G    GK++LL    S++   ++PT G  F +K V   G   KL +WD  G  + 
Sbjct: 6   RILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQSQG--FKLNVWDIGGLRKI 61
Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTF 101
           R    SY+     +I V D   R  F
Sbjct: 62  RPYWRSYFENTDILIYVIDSADRKRF 87

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL---SPTIGVDFK---VKYVDVGGKKLKLAIWDT 69
           KL ++G++G GK++LL         +L   S T+G+D K   ++  D   + L L +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AG+E F +    +       + VYD+++     +    W   I   +++   I  LVG  
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI--LVGTH 119
Query: 130 VDKESER 136
           +D   E+
Sbjct: 120 LDVSDEK 126

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEEL---SPTIGVDFK---VKYVDVGGKKLKLAIWDT 69
           KL ++G++G GK++LL         +L   S T+G+D K   ++  D   + L L +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AG+E F +    +       + VYD+++     +    W   I   +++   I  LVG  
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI--LVGTH 121
Query: 130 VDKESER 136
           +D   E+
Sbjct: 122 LDVSDEK 128

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 67/128 (52%), Gaps = 8/128 (6%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDN---FEELSPTIGVDFKVKYVDVGGK--KLKLAIWDTA 70
           K+ ++G++ VGKS+L+  FTS      ++ + T GV+  V  V +      ++L + DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD--CIKLLVGN 128
           G + ++   S Y+ G    I+V+DV+  ++F +    W + +     +++     +LV N
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCK-AWFELLKSARPDRERPLRAVLVAN 140
Query: 129 KVDKESER 136
           K D   +R
Sbjct: 141 KTDLPPQR 148

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           ++L++G  G GK+++L            PTIG  F V+ V    K LK  +WD  GQ  
Sbjct: 3  MRILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGQTS 58
Query: 75 FRTLTSSYYRGAQGIIMVYDVTRRD 99
           R     YY     +I V D   RD
Sbjct: 59 IRPYWRCYYSNTDAVIYVVDSCDRD 83

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           ++L++G  G GK+++L            PTIG  F V+ V    K LK  +WD  G   
Sbjct: 5  MRILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGLTS 60
Query: 75 FRTLTSSYYRGAQGIIMVYDVTRRD 99
           R     YY     +I V D   RD
Sbjct: 61 IRPYWRCYYSNTDAVIYVVDSCDRD 85

>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
          ++L++G  G GK+++L            PTIG  F V+ V    K LK  +WD  G    
Sbjct: 9  RILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGLTSI 64
Query: 76 RTLTSSYYRGAQGIIMVYDVTRRD 99
          R     YY     +I V D   RD
Sbjct: 65 RPYWRCYYSNTDAVIYVVDSCDRD 88

>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 25/128 (19%)
Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFE--ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            +L +G    GK++++      N +   + PTIG   +          L   ++D +GQ 
Sbjct: 23  HVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE----KFKSSSLSFTVFDMSGQG 78
Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLSDVWAKEIDLYSTNQDCIK 123
           R+R L   YY+  Q II V D + R          DT  N  D+  + I +         
Sbjct: 79  RYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPI--------- 129
Query: 124 LLVGNKVD 131
           L   NK+D
Sbjct: 130 LFFANKMD 137

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-103
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	2e-99
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	5e-99
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	6e-99
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	7e-99
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	7e-99
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	4e-98
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	5e-98
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-97
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-97
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	2e-97
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	2e-97
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-97
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	6e-97
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	3e-96
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	4e-96
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	7e-96
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	9e-96
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	9e-96
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-95
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-95
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	2e-95
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	2e-95
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	5e-95
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-93
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	2e-93
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	3e-92
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	2e-91
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	2e-91
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	3e-91
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	7e-91
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	3e-90
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	2e-89
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-88
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-87
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	2e-87
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	2e-87
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	2e-86
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	4e-86
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-84
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	6e-83
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-81
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	3e-81
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	8e-81
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	3e-79
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-78
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	2e-76
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	5e-76
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	3e-75
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	3e-75
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	6e-75
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	2e-74
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	3e-74
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	8e-74
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	4e-73
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	1e-72
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-72
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	5e-72
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	7e-72
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	5e-71
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	1e-70
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	1e-68
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	4e-67
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	9e-67
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	4e-65
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	1e-62
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	9e-62
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	3e-61
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	4e-61
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	5e-58
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	3e-53
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-49
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	2e-49
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	5e-49
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	5e-47
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	4e-46
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	6e-46
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	7e-45
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-44
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	3e-44
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	7e-44
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	8e-43
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	9e-42
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	8e-32
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	2e-29
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	2e-23
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-20
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	4e-20
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	8e-20
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	2e-19
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	2e-19
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	2e-19
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	3e-19
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	9e-19
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	3e-18
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	4e-18
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-16
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	2e-16
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	3e-16
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	1e-15
3llu_A	196	RAS-related GTP-binding protein C; structural geno	4e-15
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	7e-15
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-13
2fh5_B	214	SR-beta, signal recognition particle receptor beta	2e-12
2ged_A	193	SR-beta, signal recognition particle receptor beta	1e-10
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	4e-10
1nrj_B	218	SR-beta, signal recognition particle receptor beta	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	1e-04
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	3e-04
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	4e-04

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  294 bits (755), Expect = e-103
 Identities = 111/188 (59%), Positives = 133/188 (70%), Gaps = 3/188 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
            SS   ++     K+L+IG+SGVGKSSLLL FT D F  EL+ TIGVDFKVK + V G K
Sbjct: 4   GSSGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNK 63

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
            KLAIWDTAGQERFRTLT SYYRGAQG+I+VYDVTRRDTF  L + W  E++ Y T  D 
Sbjct: 64  AKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDN-WLNELETYCTRNDI 122

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
           + +LVGNK+DKE  R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP 
Sbjct: 123 VNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPG 181

Query: 182 LLAEGSKG 189
           L    ++ 
Sbjct: 182 LWESENQN 189

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  285 bits (731), Expect = 2e-99
 Identities = 86/180 (47%), Positives = 115/180 (63%), Gaps = 3/180 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
            +   Q  FDY+FKLL+IG+S VGK+S L  +  D F      T+G+DFKVK V    K+
Sbjct: 12  ENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKR 71

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           +KL IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D WA +I  YS   + 
Sbjct: 72  VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYS-WDNA 129

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
             +LVGNK D E ERVV  ++G   A + G  F E SAK  ++V+Q FE LV  I D  S
Sbjct: 130 QVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  284 bits (729), Expect = 5e-99
 Identities = 97/195 (49%), Positives = 127/195 (65%), Gaps = 3/195 (1%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGG 59
           + S S+   E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ G
Sbjct: 3   LGSMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG 62

Query: 60  KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ 119
           K +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y+ ++
Sbjct: 63  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SE 120

Query: 120 DCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
           +  KLLVGNK D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I   
Sbjct: 121 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 180

Query: 180 PSLLAEGSKGLKKNI 194
               A      K N+
Sbjct: 181 MGPGATAGGAEKSNV 195

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  284 bits (729), Expect = 6e-99
 Identities = 94/205 (45%), Positives = 127/205 (61%), Gaps = 5/205 (2%)

Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIW 67
            E+DYLFKLL+IG+SGVGKS LLL F+ D +  +   TIGVDFK+K V++ GK +KL IW
Sbjct: 3   SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 62

Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAGQERFRT+TSSYYRG+ GII+VYDVT +++F  +   W +EID Y+     +KLLVG
Sbjct: 63  DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKM-WLQEIDRYA-TSTVLKLLVG 120

Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS--LLAE 185
           NK D + +RVV       FA      F+E SA    NV+  F  +  +I ++ S   L E
Sbjct: 121 NKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNE 180

Query: 186 GSKGLKKNIFKQKPPEADAAASGCC 210
            ++  +         ++     GCC
Sbjct: 181 TTQKKEDKGNVNLKGQSLTNTGGCC 205

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  283 bits (727), Expect = 7e-99
 Identities = 83/177 (46%), Positives = 115/177 (64%), Gaps = 3/177 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
           SS    +  DY+FKLL+IG+S VGK+S L  +  D+F      T+G+DFKVK V    K+
Sbjct: 11  SSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKR 70

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           +KL IWDTAGQER+RT+T++YYRGA G +++YD+  +++F  + D WA +I  YS   + 
Sbjct: 71  IKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQD-WATQIKTYS-WDNA 128

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
             +LVGNK D E ERVV  ++G   A + G  F E SAK  +NV+Q FE LV  I +
Sbjct: 129 QVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICE 185

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  284 bits (728), Expect = 7e-99
 Identities = 88/204 (43%), Positives = 122/204 (59%), Gaps = 10/204 (4%)

Query: 8   QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAI 66
              FDY+FK+L+IG+S VGK+S L  +  D+F      T+G+DFKVK +    K++KL I
Sbjct: 2   SHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61

Query: 67  WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLV 126
           WDTAG ER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS   +   LLV
Sbjct: 62  WDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYS-WDNAQVLLV 119

Query: 127 GNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAE- 185
           GNK D E ERVV+ + G   A   G  F E SAK  +NV+Q FE LV  I +  S   + 
Sbjct: 120 GNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDT 179

Query: 186 ------GSKGLKKNIFKQKPPEAD 203
                 G+K   +   +Q PP  D
Sbjct: 180 ADPAVTGAKQGPQLTDQQAPPHQD 203

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  282 bits (723), Expect = 4e-98
 Identities = 76/175 (43%), Positives = 109/175 (62%), Gaps = 3/175 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKK 61
           +      E+DYLFK+++IGDSGVGKS+LL  FT + F   S  TIGV+F  + + V GK 
Sbjct: 18  AMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           +K  IWDTAG ER+R +TS+YYRGA G ++VYD+ +  T+ N+   W KE+  ++ + + 
Sbjct: 78  IKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVER-WLKELRDHA-DSNI 135

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + +LVGNK D    R V   E   FA + G  FIE SA    NV+  F+ ++ +I
Sbjct: 136 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  281 bits (722), Expect = 5e-98
 Identities = 93/177 (52%), Positives = 121/177 (68%), Gaps = 3/177 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
             S+   E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK 
Sbjct: 22  PMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT 81

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y+ +++ 
Sbjct: 82  IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENV 139

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
            KLLVGNK D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I  
Sbjct: 140 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  280 bits (719), Expect = 1e-97
 Identities = 75/175 (42%), Positives = 112/175 (64%), Gaps = 4/175 (2%)

Query: 6   ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS--PTIGVDFKVKYVDVGGKKLK 63
           +    +D  FK++++GDSGVGK+ LL+ F    F   +   T+G+DF+ K +DV G K+K
Sbjct: 2   SGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVK 61

Query: 64  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
           L +WDTAGQERFR++T +YYR A  ++++YDVT + +F N+   W  EI  Y+   D   
Sbjct: 62  LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQA-WLTEIHEYA-QHDVAL 119

Query: 124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           +L+GNKVD   ERVV +++G   A+EYG  F+E SAKT +NV   F  +  ++  
Sbjct: 120 MLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  280 bits (719), Expect = 1e-97
 Identities = 85/179 (47%), Positives = 123/179 (68%), Gaps = 4/179 (2%)

Query: 2   DSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGK 60
                S +  D+  ++++IG  GVGK+SL+  FT D F E    T+GVDFK+K V++ GK
Sbjct: 14  LVPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGK 73

Query: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
           K++L IWDTAGQERF ++TS+YYR A+GII+VYD+T+++TF +L   W K ID Y+ ++D
Sbjct: 74  KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYA-SED 131

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEELVLKILD 178
              LLVGNK+D E++R +T+++G  FA++  G  F E SAK   NV + F +LV  IL 
Sbjct: 132 AELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  279 bits (717), Expect = 2e-97
 Identities = 83/172 (48%), Positives = 114/172 (66%), Gaps = 4/172 (2%)

Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIW 67
           +++D+LFKLL+IGDSGVGKSSLLL F  + F      TIGVDFK++ V++ G+K+KL IW
Sbjct: 4   RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 63

Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAGQERFRT+TS+YYRG  G+I+VYDVT  ++F N+   W  EI+    +    ++LVG
Sbjct: 64  DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR-WLHEINQNCDD--VCRILVG 120

Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
           NK D    +VV  ++   FA + G    E SAK  VNV++ F  +   +L  
Sbjct: 121 NKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRA 172

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  279 bits (717), Expect = 2e-97
 Identities = 85/176 (48%), Positives = 114/176 (64%), Gaps = 3/176 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
            S+ +   + Y+FK ++IGD GVGKS LL  FT   F  +   TIGV+F  + ++V G+K
Sbjct: 4   GSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK 63

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           +KL IWDTAGQERFR +T SYYRGA G +MVYD+TRR T+ +LS  W  +    + N + 
Sbjct: 64  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDARNLT-NPNT 121

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           + +L+GNK D E++R VT +E   FA E G LF+E SAKT  NV+  F E   KI 
Sbjct: 122 VIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  280 bits (718), Expect = 2e-97
 Identities = 72/177 (40%), Positives = 114/177 (64%), Gaps = 3/177 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
               S +++D+LFK+++IG++GVGK+ L+  FT   F      TIGVDF +K V++ G+K
Sbjct: 15  VPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK 74

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           +KL IWDTAGQERFR++T SYYR A  +I+ YD+T  ++F  L + W +EI+ Y+ +   
Sbjct: 75  VKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE-WLREIEQYA-SNKV 132

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           I +LVGNK+D    R V+++    F+      ++E SAK   NV++ F +L  +++ 
Sbjct: 133 ITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLIS 189

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  279 bits (715), Expect = 6e-97
 Identities = 63/179 (35%), Positives = 94/179 (52%), Gaps = 6/179 (3%)

Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKL 62
           S   +     +FK+++IGDS VGK+ L   F +  F +    TIGVDF+ + VD+ G+++
Sbjct: 10  SLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERI 69

Query: 63  KLAIWDTAGQERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           K+ +WDTAGQERFR ++   YYR    ++ VYD+T   +F +L   W +E   +    D 
Sbjct: 70  KIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPA-WIEECKQHLLANDI 128

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR---VNVQQCFEELVLKIL 177
            ++LVGNK D  S   V       FA  +     E SAK      +V+  F  L  K+ 
Sbjct: 129 PRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  277 bits (711), Expect = 3e-96
 Identities = 85/177 (48%), Positives = 120/177 (67%), Gaps = 3/177 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKK 61
            SS       YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + V++ GK+
Sbjct: 10  HSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQ 69

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           +KL IWDTAGQE FR++T SYYRGA G ++VYD+TRR+TF +L+  W ++   +S + + 
Sbjct: 70  IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTS-WLEDARQHS-SSNM 127

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           + +L+GNK D ES R V ++EG  FARE+G +F+E SAKT  NV++ F     +I  
Sbjct: 128 VIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 184

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  277 bits (711), Expect = 4e-96
 Identities = 96/210 (45%), Positives = 129/210 (61%), Gaps = 6/210 (2%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGG 59
           + +SS + + +D + K+L+IGDSGVGKS LL+ F  D F      TIG+DFK+K VD+ G
Sbjct: 7   VSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING 66

Query: 60  KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ 119
           KK+KL +WDTAGQERFRT+T++YYRGA GII+VYDVT   TFTN+   W K ++ ++ N 
Sbjct: 67  KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-ND 124

Query: 120 DCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
           +   LLVGNK D E  RVVT  +G   A+E G  FIE SAK   NV + F  L   I + 
Sbjct: 125 EAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183

Query: 180 --PSLLAEGSKGLKKNIFKQKPPEADAAAS 207
              + L     G + NI         + ++
Sbjct: 184 IDSNKLVGVGNGKEGNISINSGSGNSSKSN 213

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  275 bits (707), Expect = 7e-96
 Identities = 80/171 (46%), Positives = 118/171 (69%), Gaps = 3/171 (1%)

Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIW 67
           + +DYLFKLL+IGDSGVGK+ +L  F+ D F      TIG+DFK++ +++ GK++KL IW
Sbjct: 3   KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62

Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ ++ + D  K+++G
Sbjct: 63  DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHA-SADVEKMILG 120

Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           NK D   +R V+K+ G   A +YG  F+E SAK  +NV+  F  L   I  
Sbjct: 121 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA 171

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  276 bits (708), Expect = 9e-96
 Identities = 72/181 (39%), Positives = 113/181 (62%), Gaps = 4/181 (2%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
            S    +++D+LFKL+++GD+ VGK+ ++  F +  F E    TIGVDF +K +++ GK+
Sbjct: 18  GSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR 77

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           +KL IWDTAGQERFRT+T SYYR A G I+ YD+T+R +F ++   W +++  Y+   + 
Sbjct: 78  VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPH-WIEDVRKYA-GSNI 135

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
           ++LL+GNK D    R V+  E  + A  Y  L  IE SAK   NV++ F  +  +++   
Sbjct: 136 VQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRH 195

Query: 181 S 181
            
Sbjct: 196 G 196

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  276 bits (707), Expect = 9e-96
 Identities = 69/177 (38%), Positives = 107/177 (60%), Gaps = 3/177 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKK 61
                 ++++++FK+++IG+SGVGK++LL  FT + F   S  TIGV+F  + V +G   
Sbjct: 14  LVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAA 73

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           +K  IWDTAG ER+R +TS+YYRGA G ++V+D+T+  T+  +   W KE+  ++     
Sbjct: 74  VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVER-WLKELYDHA-EATI 131

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           + +LVGNK D    R V  +E   FA   G LF+E SA    NV+  FE ++ +I  
Sbjct: 132 VVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFA 188

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  276 bits (709), Expect = 1e-95
 Identities = 82/224 (36%), Positives = 119/224 (53%), Gaps = 18/224 (8%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKK 61
           SS     ++D LFK+++IGDSGVGKS+LL  FT + F   S  TIGV+F  + +++ GK+
Sbjct: 2   SSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKR 61

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           +K  IWDTAGQER+R +TS+YYRGA G ++VYD+++  ++ N +  W  E+   + + + 
Sbjct: 62  IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNH-WLSELRENA-DDNV 119

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
              L+GNK D    R V  +E   FA+E   LF E SA    NV + FEEL+  I    S
Sbjct: 120 AVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVS 179

Query: 182 ---------------LLAEGSKGLKKNIFKQKPPEADAAASGCC 210
                            A    G   ++         A  + CC
Sbjct: 180 KHQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  276 bits (707), Expect = 1e-95
 Identities = 64/185 (34%), Positives = 107/185 (57%), Gaps = 12/185 (6%)

Query: 5   SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDV------ 57
           S S  ++DYL K L +GDSGVGK+S+L  +T   F      T+G+DF+ K V        
Sbjct: 2   SMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPD 61

Query: 58  ----GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEID 113
                G+++ L +WDTAG ERFR+LT++++R A G ++++D+T   +F N+ + W  ++ 
Sbjct: 62  GAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQ 120

Query: 114 LYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
           +++ +++   +L GNK D E +R V ++E    A +YG  + E SA    N+    E L+
Sbjct: 121 MHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180

Query: 174 LKILD 178
             I+ 
Sbjct: 181 DLIMK 185

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  274 bits (704), Expect = 2e-95
 Identities = 79/174 (45%), Positives = 117/174 (67%), Gaps = 3/174 (1%)

Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIW 67
           + +D+LFK L+IG++G GKS LL  F    F++ S  TIGV+F  K ++VGGK +KL IW
Sbjct: 5   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64

Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAGQERFR++T SYYRGA G ++VYD+T R+T+  L++ W  +  + + +Q+ + +L G
Sbjct: 65  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLA-SQNIVIILCG 122

Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
           NK D +++R VT  E   FA+E   +F+E SA T  NV++ F +   KIL+   
Sbjct: 123 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIE 176

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  275 bits (705), Expect = 2e-95
 Identities = 78/175 (44%), Positives = 111/175 (63%), Gaps = 3/175 (1%)

Query: 5   SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLK 63
                  D+LFK L+IG +G GKS LL  F  + F++ S  TIGV+F  + V+VGGK +K
Sbjct: 16  PRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVK 75

Query: 64  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
           L IWDTAGQERFR++T SYYRGA G ++VYD+T R+T+ +L+  W  +    + + + + 
Sbjct: 76  LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAA-WLTDARTLA-SPNIVV 133

Query: 124 LLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           +L GNK D + ER VT  E   FA+E   +F+E SA T  NV++ F +    IL+
Sbjct: 134 ILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 188

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  274 bits (704), Expect = 5e-95
 Identities = 63/188 (33%), Positives = 108/188 (57%), Gaps = 12/188 (6%)

Query: 2   DSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGK 60
                   ++DYL KLL +GDSGVGK++ L  +T + F  +   T+G+DF+ K V    +
Sbjct: 13  GLVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQ 72

Query: 61  ----------KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAK 110
                     K+ L +WDTAGQERFR+LT++++R A G ++++D+T + +F N+ + W  
Sbjct: 73  GPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMS 131

Query: 111 EIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170
           ++   +  ++   +L+GNK D   +R V +++    A +YG  + E SA T  NV++  E
Sbjct: 132 QLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVE 191

Query: 171 ELVLKILD 178
            L+  I+ 
Sbjct: 192 TLLDLIMK 199

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  269 bits (690), Expect = 2e-93
 Identities = 90/168 (53%), Positives = 113/168 (67%), Gaps = 4/168 (2%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           D + K+L+IGDSGVGKS LL+ F  D F      TIG+DFK+K VD+ GKK+KL IWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60

Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQERFRT+T++YYRGA GII+VYD+T   TFTN+   W K ++ ++ N +   LLVGNK 
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKS 118

Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           D E  RVVT  +G   A+E G  FIE SAK   NV + F  L   I +
Sbjct: 119 DME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  270 bits (692), Expect = 2e-93
 Identities = 76/172 (44%), Positives = 109/172 (63%), Gaps = 3/172 (1%)

Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDT 69
           +DYLFK+++IGDSGVGKS+LL  FT + F   S  TIGV+F  + + V GK +K  IWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61

Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQER+R +TS+YYRGA G ++VYD+ +  T+ N+   W KE+  ++ + + + +LVGNK
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVER-WLKELRDHA-DSNIVIMLVGNK 119

Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
            D    R V   E   FA +    FIE SA    NV++ F+ ++ +I    S
Sbjct: 120 SDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVS 171

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  266 bits (682), Expect = 3e-92
 Identities = 63/170 (37%), Positives = 101/170 (59%), Gaps = 3/170 (1%)

Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDT 69
             Y FK++++G+  VGK+SL+L +  + F +    T+G  F  K +++GGK++ LAIWDT
Sbjct: 3   RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDT 62

Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQERF  L   YYR + G I+VYD+T  D+F  + + W KE+       +    +VGNK
Sbjct: 63  AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKML-GNEICLCIVGNK 120

Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
           +D E ER V+ +E  ++A   G      SAK    +++ F +L  ++++T
Sbjct: 121 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 170

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  265 bits (680), Expect = 2e-91
 Identities = 66/183 (36%), Positives = 102/183 (55%), Gaps = 9/183 (4%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
             SA        +K+++ GD+ VGKSS L+    + F E +S T+GVDF++K + V G++
Sbjct: 17  RGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGER 76

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
             L +WDTAGQERFR++  SY+R A G++++YDVT   +F N+ + W   I+  + ++  
Sbjct: 77  TVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE-WVDMIEDAA-HETV 134

Query: 122 IKLLVGNKVD------KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLK 175
             +LVGNK D       E ++ V    G   A  YG LF E SAK   N+ +    L  +
Sbjct: 135 PIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLARE 194

Query: 176 ILD 178
           +  
Sbjct: 195 VKK 197

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  264 bits (677), Expect = 2e-91
 Identities = 53/168 (31%), Positives = 90/168 (53%), Gaps = 4/168 (2%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
           +   K++++G+  VGKSS++  +    F ++   TIGVDF  + + V  + ++L +WDTA
Sbjct: 3   EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTA 62

Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQE F  +T +YYRGAQ  ++V+  T R++F  +S  W +++     +      LV NK+
Sbjct: 63  GQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISS-WREKVVAEVGD--IPTALVQNKI 119

Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           D   +  +  +E    A+     F   S K  +NV + F+ L  K L 
Sbjct: 120 DLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  265 bits (680), Expect = 3e-91
 Identities = 71/209 (33%), Positives = 110/209 (52%), Gaps = 4/209 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKK 61
           S+          FKL+ +G+  VGK+SL+  F  D+F+     TIG+DF  K + +  + 
Sbjct: 5   STGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 64

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           ++L +WDTAG ERFR+L  SY R +   ++VYD+T  ++F   +  W  ++       D 
Sbjct: 65  VRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTK-WIDDVRTER-GSDV 122

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
           I +LVGNK D   +R V+ +EG   A+E   +FIE SAK   NV+Q F  +   +    S
Sbjct: 123 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 182

Query: 182 LLAEGSKGLKKNIFKQKPPEADAAASGCC 210
              + S+    +I  +KP E   +  GC 
Sbjct: 183 -TQDRSREDMIDIKLEKPQEQPVSEGGCL 210

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  263 bits (674), Expect = 7e-91
 Identities = 56/175 (32%), Positives = 88/175 (50%), Gaps = 5/175 (2%)

Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGK-KLKLAIWD 68
                K++++GD   GK+SL   F  + F +    TIG+DF ++ + + G   + L IWD
Sbjct: 3   HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWD 62

Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST--NQDCIKLLV 126
             GQ     +   Y  GAQG+++VYD+T   +F NL D W   +   S       +  LV
Sbjct: 63  IGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLED-WYTVVKKVSEESETQPLVALV 121

Query: 127 GNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
           GNK+D E  R +  ++ + F +E G      SAKT  +V  CF+++  +IL    
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKL 176

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  263 bits (674), Expect = 3e-90
 Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 4/201 (1%)

Query: 5   SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGV-DFKVKYVDVGGKKL 62
             S +  +  +K+ +IGD GVGK++ +       FE+    T+G  +  V ++D  G  +
Sbjct: 2   PGSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVI 61

Query: 63  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI 122
           K  +WDTAGQE+   L   YY GA G I+ +DVT R T  NL+  W KE      N +  
Sbjct: 62  KFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLAR-WVKEFQAVVGN-EAP 119

Query: 123 KLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
            ++  NK+D ++ + ++KK  +   +     + E SAKT  N    F  L       P L
Sbjct: 120 IVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDL 179

Query: 183 LAEGSKGLKKNIFKQKPPEAD 203
           +   +  L+           +
Sbjct: 180 IFVSNVNLEPTEVNYDYHSPE 200

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  259 bits (664), Expect = 2e-89
 Identities = 68/174 (39%), Positives = 105/174 (60%), Gaps = 7/174 (4%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
             LFK++++GD GVGKSSL+  + ++ F  +L  TIGV+F  K ++V G  + + IWDTA
Sbjct: 5   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 64

Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC---IKLLVG 127
           GQERFR+L + +YRG+   ++ + V    +F NLS+ W KE   Y+  ++      +++G
Sbjct: 65  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILG 123

Query: 128 NKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
           NK+D   ER V+ +E   + R+ G   + E SAK   NV   FEE V ++L T 
Sbjct: 124 NKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  257 bits (659), Expect = 1e-88
 Identities = 68/179 (37%), Positives = 96/179 (53%), Gaps = 3/179 (1%)

Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKL 62
           S A+        KL+++GD G GKSSL+L F  D F E    TIG  F  + + V    +
Sbjct: 2   SMAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATV 61

Query: 63  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI 122
           K  IWDTAGQER+ +L   YYRGA   I+V+DVT + +F      W +E+     N + +
Sbjct: 62  KFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKK-WVQELQAQG-NPNMV 119

Query: 123 KLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
             L GNK D    R VT ++   +A+E G  F+E SAKT  NV++ F E+  ++     
Sbjct: 120 MALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQP 178

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  254 bits (651), Expect = 2e-87
 Identities = 62/166 (37%), Positives = 95/166 (57%), Gaps = 3/166 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+ ++GD+GVGKSS++  F  D+F+    PTIG  F  K V    +  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFR L   YYRG+   I+VYD+T+ +TF+ L + W +E+  +      +  + GNK D  
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHG-PPSIVVAIAGNKCDLT 124

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
             R V +++  ++A     +F+E SAK  +N+ + F E+  +I  T
Sbjct: 125 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPST 170

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  255 bits (654), Expect = 2e-87
 Identities = 69/206 (33%), Positives = 108/206 (52%), Gaps = 6/206 (2%)

Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIW 67
                L K++++GDSGVGK+SL+  + +  F      TIG DF  K V V  + + + IW
Sbjct: 3   SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 62

Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC---IKL 124
           DTAGQERF++L  ++YRGA   ++V+DVT  +TF  L   W  E  + ++ +D      +
Sbjct: 63  DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFV 121

Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLA 184
           ++GNK+D E+ +V TK+       +    + E SAK  +NV+Q F+ +    L   +   
Sbjct: 122 VLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET-EV 180

Query: 185 EGSKGLKKNIFKQKPPEADAAASGCC 210
           E      + I   K   A A+A  C 
Sbjct: 181 ELYNEFPEPIKLDKNERAKASAESCS 206

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  256 bits (655), Expect = 2e-87
 Identities = 59/180 (32%), Positives = 96/180 (53%), Gaps = 6/180 (3%)

Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKL 62
           +SA+Q E    FKL+++GD G GK++ +    +  FE+    T+GV+            +
Sbjct: 5   ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI 64

Query: 63  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI 122
           K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +++     N    
Sbjct: 65  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCEN--IP 121

Query: 123 KLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
            +L GNKVD +  +V    + I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 122 IVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  252 bits (646), Expect = 2e-86
 Identities = 63/180 (35%), Positives = 98/180 (54%), Gaps = 3/180 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKK 61
           S    +       K+ ++GD+GVGKSS++  F  D+F+    PTIG  F  K V  G + 
Sbjct: 12  SGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNEL 71

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
            K  IWDTAGQERF +L   YYRG+   ++VYD+T++D+F  L   W KE+  +   ++ 
Sbjct: 72  HKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKK-WVKELKEHG-PENI 129

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 181
           +  + GNK D    R V  K+   +A   G + +E SAK  +N+++ F+ +  +I     
Sbjct: 130 VMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDP 189

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  251 bits (643), Expect = 4e-86
 Identities = 66/174 (37%), Positives = 98/174 (56%), Gaps = 3/174 (1%)

Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKL 62
           SS         FKL+ +G+  VGK+SL+  F  D+F+     TIG+DF  K + +  + +
Sbjct: 4   SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV 63

Query: 63  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI 122
           +L +WDTAGQERFR+L  SY R +   ++VYD+T  ++F   S  W  ++       D I
Sbjct: 64  RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSK-WIDDVRTER-GSDVI 121

Query: 123 KLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            +LVGNK D   +R V+ +EG   A+E   +FIE SAK   NV+Q F  +   +
Sbjct: 122 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  247 bits (632), Expect = 1e-84
 Identities = 66/166 (39%), Positives = 97/166 (58%), Gaps = 3/166 (1%)

Query: 13  YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAG 71
             FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAG
Sbjct: 5   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64

Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           QER+ +L   YYRGAQ  I+VYD+T  ++F    + W KE+   + + + +  L GNK D
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQA-SPNIVIALSGNKAD 122

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
             ++R V  +E  ++A +   LF+E SAKT +NV + F  +  K+ 
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  243 bits (622), Expect = 6e-83
 Identities = 63/178 (35%), Positives = 104/178 (58%), Gaps = 8/178 (4%)

Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKL-KLAI 66
                + K++++GDSGVGK+SL+  + +D + +    TIG DF  K V V G K+  + +
Sbjct: 3   SRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQV 62

Query: 67  WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS---TNQDCIK 123
           WDTAGQERF++L  ++YRGA   ++VYDVT   +F N+   W  E  +++   + +    
Sbjct: 63  WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPF 121

Query: 124 LLVGNKVD-KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDT 179
           +++GNK+D +ES+++V++K     A+  G +     SAK  +NV   FEE+    L  
Sbjct: 122 VILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  240 bits (614), Expect = 2e-81
 Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 3/176 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKK 61
            +   Q + D +FK++++G+SGVGKS+L  +F     +    P    D   + + V  ++
Sbjct: 12  ENLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEE 71

Query: 62  LKLAIWDTAGQERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
           + L ++D   Q      L     +     ++V+ VT R +F+ + +     +     + D
Sbjct: 72  VTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHD 130

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
              +LVGNK D    R V+ +EG + A    C  IE SA    N ++ FE  V +I
Sbjct: 131 LPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  239 bits (613), Expect = 3e-81
 Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 10/186 (5%)

Query: 2   DSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFT--SDNFEELS-PTIGVDFKVKYVDVG 58
                         K+ ++G++ VGKS+L+  FT     F +    T GV+  V  V + 
Sbjct: 8   KEVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIP 67

Query: 59  GKKLKLAIW--DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS 116
              + + ++  DTAG + ++   S Y+ G    I+V+DV+  ++F +    W + +    
Sbjct: 68  DTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKA-WFELLKSAR 126

Query: 117 --TNQDCIKLLVGNKVDKESER-VVTKKEGINFAREYGCLFIECSAK-TRVNVQQCFEEL 172
               +    +LV NK D   +R  V      ++A      F + SA     +    F  +
Sbjct: 127 PDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSI 186

Query: 173 VLKILD 178
                 
Sbjct: 187 ATTFYR 192

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  238 bits (610), Expect = 8e-81
 Identities = 67/211 (31%), Positives = 114/211 (54%), Gaps = 8/211 (3%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGG 59
           M ++    Q    L K++M+G  GVGKS+L L F  D F E+  PT    ++ K V + G
Sbjct: 1   MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDG 59

Query: 60  KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ 119
           +++++ I DTAGQE +  +  +Y+R  +G + V+ +T  ++F   +D + ++I     ++
Sbjct: 60  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDE 118

Query: 120 DCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
           +   LLVGNK D E +R V+ +E  N A ++   ++E SAKTR NV + F +L+ +I   
Sbjct: 119 NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA- 177

Query: 180 PSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210
                +     +KN  K++   A      CC
Sbjct: 178 ----RKMEDSKEKNGKKKRKSLAKRIRERCC 204

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  233 bits (598), Expect = 3e-79
 Identities = 60/177 (33%), Positives = 102/177 (57%), Gaps = 3/177 (1%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGG 59
           +       Q    L K++M+G  GVGKS+L L F  D F E+  PT    ++ K V + G
Sbjct: 5   ISGGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDG 63

Query: 60  KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ 119
           +++++ I DTAGQE +  +  +Y+R  +G + V+ +T  ++F   +D + ++I     ++
Sbjct: 64  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDE 122

Query: 120 DCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           +   LLVGNK D E +R V+ +E  N A ++   ++E SAKTR NV + F +L+ +I
Sbjct: 123 NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  231 bits (592), Expect = 2e-78
 Identities = 58/168 (34%), Positives = 82/168 (48%), Gaps = 3/168 (1%)

Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
                 KL+++G  GVGKS+L + F    F  +  PTI  D   K   V G   +L I D
Sbjct: 5   PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILD 63

Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQE F  +   Y R   G ++V+ +  R +F  +      +I       D   +LVGN
Sbjct: 64  TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGN 122

Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D ES+R V + E   F   +   + E SAK R+NV + FE+LV  +
Sbjct: 123 KADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  227 bits (581), Expect = 2e-76
 Identities = 60/208 (28%), Positives = 93/208 (44%), Gaps = 43/208 (20%)

Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLK----- 63
           E    +K +++G+S VGKSS++L  T D F E +  TIG  F    V++    +K     
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 64  --------------------------------LAIWDTAGQERFRTLTSSYYRGAQGIIM 91
                                             IWDTAGQER+ ++   YYRGA   I+
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122

Query: 92  VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG 151
           V+D++  +T       W  ++     + + I +LV NK+DK  +  V   E   +A++  
Sbjct: 123 VFDISNSNTLDRAKT-WVNQLK---ISSNYIIILVANKIDKN-KFQVDILEVQKYAQDNN 177

Query: 152 CLFIECSAKTRVNVQQCFEELVLKILDT 179
            LFI+ SAKT  N++  F  L  +I   
Sbjct: 178 LLFIQTSAKTGTNIKNIFYMLAEEIYKN 205

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  225 bits (575), Expect = 5e-76
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 3/165 (1%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           +FK++++G+SGVGKS+L  +F     +         D   + + V  +++ L ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 73  ERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
                 L     +     ++V+ VT R +F+ + +     +     + D   +LVGNK D
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSD 120

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
               R V+ +EG + A    C  IE SA    N ++ FE  V +I
Sbjct: 121 LARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  224 bits (573), Expect = 3e-75
 Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 10/205 (4%)

Query: 7   SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLA 65
           S  E    +++++ G  GVGKSSL+L F    F +   PTI   ++ + +        L 
Sbjct: 1   SMPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQ 59

Query: 66  IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLL 125
           I DT G  +F  +           I+V+ VT + +   L  ++   + +  + +D   +L
Sbjct: 60  ITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVML 119

Query: 126 VGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAE 185
           VGNK D E++R V  +E    A+E+ C F+E SAK   NV++ F+EL+         L  
Sbjct: 120 VGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNI 178

Query: 186 GSKGLKKNIFKQKPPEADAAASGCC 210
             K   K     +         G C
Sbjct: 179 DGKRSGKQKRTDRV-------KGKC 196

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  223 bits (570), Expect = 3e-75
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 2/163 (1%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           ++K+L++G  GVGKS+L   F        +   G  +  + + V G++  L ++D   Q+
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
             R L           ++VY VT + +F   S+    ++       D   +LVGNK D  
Sbjct: 61  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLV 119

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
             R V+  EG   A  + C FIE SA    NVQ  FE +V +I
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  222 bits (568), Expect = 6e-75
 Identities = 59/164 (35%), Positives = 100/164 (60%), Gaps = 3/164 (1%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++M+G  GVGKS+L L F  D F E+  PT    ++ K V + G+++++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62

Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           E +  +  +Y+R  +G + V+ +T  ++F   +D + ++I     +++   LLVGNK D 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDL 121

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           E +R V+ +E  N A ++   ++E SAKTR NV + F +L+ +I
Sbjct: 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  221 bits (566), Expect = 2e-74
 Identities = 60/176 (34%), Positives = 94/176 (53%), Gaps = 4/176 (2%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
           ++SA   E    +KL+++GD GVGKS+L + F    F ++  PTI  D  +K+ ++  + 
Sbjct: 7   ATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQW 65

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
             L + DTAGQE F  +   Y R   G ++VY VT + +F ++   + + I      +  
Sbjct: 66  AILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDR-FHQLILRVKDRESF 124

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT-RVNVQQCFEELVLKI 176
             +LV NKVD    R VT+ +G   A +Y   +IE SAK   +NV + F +LV  I
Sbjct: 125 PMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  221 bits (565), Expect = 3e-74
 Identities = 55/177 (31%), Positives = 84/177 (47%), Gaps = 3/177 (1%)

Query: 13  YLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71
              K+ ++G   VGKSSL + F    F +   PTI   F  K + V G++  L + DTAG
Sbjct: 5   KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAG 63

Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           Q+ +     +Y     G I+VY VT   +F  +  +  K +D+    Q  I +LVGNK D
Sbjct: 64  QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKD 122

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSK 188
              ERV++ +EG   A  +   F+E SAK        F  ++L+        ++G  
Sbjct: 123 LHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACSQGKS 179

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  219 bits (561), Expect = 8e-74
 Identities = 56/163 (34%), Positives = 89/163 (54%), Gaps = 4/163 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDLA 121

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
             R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I
Sbjct: 122 -ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  217 bits (556), Expect = 4e-73
 Identities = 61/163 (37%), Positives = 94/163 (57%), Gaps = 3/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +K++++G  GVGKS+L + F +  F E+  PTI  DF  K ++V      L I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F ++   Y +  QG I+VY +  + +F ++      +I      +    +LVGNKVD E
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLE 121

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           SER V+  EG   A E+GC F+E SAK++  V + F E+V ++
Sbjct: 122 SEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  217 bits (554), Expect = 1e-72
 Identities = 57/163 (34%), Positives = 89/163 (54%), Gaps = 4/163 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F +++  + ++I     + D   +LVGNK D  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINL-YREQIKRVKDSDDVPMVLVGNKCDLP 139

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
             R V  K+    A+ YG  FIE SAKTR  V+  F  LV +I
Sbjct: 140 -TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  217 bits (555), Expect = 2e-72
 Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 3/175 (1%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
           +            K++++G   VGK+SL   F    F E   PT+   +  K V +G  +
Sbjct: 13  NLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDE 71

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
             L + DTAGQ+ +  L  S+  G  G ++VY VT   +F  +     +++         
Sbjct: 72  FHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIES-LYQKLHEGHGKTRV 130

Query: 122 IKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
             +LVGNK D   ER V   EG   A  +G  F+E SA+     Q  F +++ +I
Sbjct: 131 PVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  215 bits (551), Expect = 5e-72
 Identities = 61/179 (34%), Positives = 95/179 (53%), Gaps = 4/179 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L +    ++F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +   Y R  +G + V+ +    +F ++   + ++I     ++D   +LVGNK D  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLP 122

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKK 192
             R V  K+  + AR YG  FIE SAKTR  V   F  LV +I      +++  K  KK
Sbjct: 123 -SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKK 180

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  215 bits (549), Expect = 7e-72
 Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 2/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +++ + G  GVGKSSL+L F    F E   PT+   ++ + +        L I DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  +           I+VY +T R +   L  ++ +  ++    +    +LVGNK D+ 
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
             R V   E    AR + C F+E SAK   NV++ F+EL+   
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  212 bits (542), Expect = 5e-71
 Identities = 66/164 (40%), Positives = 100/164 (60%), Gaps = 4/164 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           +KL+++G  GVGKS+L + F    F E+  PTI   ++ K V+V  ++  L I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  +   Y +  QG  +VY +T + TF +L D   ++I      +D   +LVGNK D E
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLE 121

Query: 134 SERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEELVLKI 176
            ERVV K++G N AR++  C F+E SAK+++NV + F +LV +I
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  211 bits (540), Expect = 1e-70
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 3/165 (1%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           L++++++GD GVGK+SL   F      +L   +G D   + + V G+   L + DT   E
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63

Query: 74  RFRTLTS--SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           +     S  S  +G    ++VY +  R +F + S+    ++           +LVGNK D
Sbjct: 64  KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASE-LRIQLRRTHQADHVPIILVGNKAD 122

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
               R V+ +EG   A  + C FIE SA  + NV + FE +V ++
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQL 167

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  207 bits (530), Expect = 1e-68
 Identities = 47/180 (26%), Positives = 84/180 (46%), Gaps = 10/180 (5%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF---EELSPTIGVDFKVKYVDVGG 59
            S  S +  +  +++++IG+ GVGKS+L   F   +     +       D   + + V G
Sbjct: 26  DSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLG-EDTYERTLMVDG 84

Query: 60  KK---LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS 116
           +    + L +W+  G+  +  L     +     ++VY +T R +F   S+    ++    
Sbjct: 85  ESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASE-LRIQLRRAR 141

Query: 117 TNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
             +D   +LVGNK D    R V+  EG   A  + C FIE SA  + NV++ FE +V ++
Sbjct: 142 QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  203 bits (519), Expect = 4e-67
 Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 5/178 (2%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGG 59
            ++            KL + G +GVGKS+L++ F +  F  E  PT+   ++     +  
Sbjct: 15  TENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDD 73

Query: 60  KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ 119
           + + + I DTAGQE        + R  +G ++VYD+T R +F  +       +D     +
Sbjct: 74  EVVSMEILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEIKKPK 131

Query: 120 DCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT-RVNVQQCFEELVLKI 176
           +   +LVGNK D +  R V+ +EG   A E  C F ECSA T   N+ + F EL  ++
Sbjct: 132 NVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  201 bits (514), Expect = 9e-67
 Identities = 73/168 (43%), Positives = 99/168 (58%), Gaps = 6/168 (3%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            KL+++G++ VGKSS++L F S++F E   PTIG  F  + V +    +K  IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD-- 131
           RF +L   YYR AQ  ++VYDVT+  +F      W KE+   + ++D I  LVGNK+D  
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARH-WVKELHEQA-SKDIIIALVGNKIDXL 121

Query: 132 -KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
            +  ER V ++EG   A E G LF E SAKT  NV   F  +  KI  
Sbjct: 122 QEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  198 bits (505), Expect = 4e-65
 Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 9/177 (5%)

Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKL 62
           +   Q   +    L ++G  G GKS+L + F +  F  E  P +   +      V  + +
Sbjct: 13  NLYFQGPLEV--NLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPV 69

Query: 63  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLY--STNQD 120
            L + DTA  +  R     Y   A   ++VY V  R +F + S  + + + L+   T + 
Sbjct: 70  HLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSS-YLELLALHAKETQRS 127

Query: 121 CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV-NVQQCFEELVLKI 176
              LL+GNK+D    R VTK EG+  A  +GCLF E SA     +VQ  F E V + 
Sbjct: 128 IPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREA 184

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  191 bits (488), Expect = 1e-62
 Identities = 36/178 (20%), Positives = 74/178 (41%), Gaps = 16/178 (8%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELS---PTIGVDFKVKYVDVGGKK---LKLAIWD 68
            KL+++G++G GK++LL         +L     T+G+D K   + +  K+   L L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
            AG+E F +    +       + VYD+++     +    W   I   +++     +LVG 
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASS--SPVILVGT 120

Query: 129 KVDKESER---VVTKKEGINFAREYGCLFI-----ECSAKTRVNVQQCFEELVLKILD 178
            +D   E+       K       + G   I       + +    + +  + ++ + L+
Sbjct: 121 HLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  189 bits (483), Expect = 9e-62
 Identities = 30/167 (17%), Positives = 70/167 (41%), Gaps = 10/167 (5%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            K+ ++G+   GKS+L+  + +  + +     G  FK K + V G+   L I D  G   
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFK-KEIVVDGQSYLLLIRDEGGPPE 79

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--K 132
            +     +      ++ V+ +    +F  + + +   +  +    +   +LVG +     
Sbjct: 80  LQ-----FAAWVDAVVFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 133 ESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEELVLKILD 178
            + RV+        + +   C + E  A   +NV++ F+++  K++ 
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVA 180

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  188 bits (479), Expect = 3e-61
 Identities = 39/180 (21%), Positives = 74/180 (41%), Gaps = 16/180 (8%)

Query: 4   SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLK 63
           S  S  E     +L ++GD+  GKSSL+  F + +++ L  T    +K K + V G+   
Sbjct: 1   SMRSIPEL----RLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK-KEMLVDGQTHL 55

Query: 64  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLY----STNQ 119
           + I + AG    +     +   A  +I V+ +   ++F  +S     ++           
Sbjct: 56  VLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSR-LHGQLSSLRGEGRGGL 109

Query: 120 DCIKLLVGNKVDKESERVVTKKEGINF-AREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
               +   +++   S RVV         A    C + E  A   +NV + F+E+  K++ 
Sbjct: 110 ALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVT 169

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  188 bits (479), Expect = 4e-61
 Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 8/168 (4%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFT--SDNFEELSPTIGVDFKVKYVDVGGKK---LKLAIWD 68
            +++++IG+ GVGKS+L   F    D+ +     +G D   + + V G+    + L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65

Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
             G+  +  L     +     ++VY +T R +F   S+    ++      +D   +LVGN
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGN 122

Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           K D    R V+  EG   A  +   FIE SA  + NV++ FE +V ++
Sbjct: 123 KSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  180 bits (459), Expect = 5e-58
 Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 7/184 (3%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGG 59
           M++ +   +      K++++GD  VGK+ LLL+F+         PT+  +F    +    
Sbjct: 10  MNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKN 68

Query: 60  KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ 119
           ++  L +WDTAGQE +  L    Y  +  +++ + V  R +F N+S  W  EI  Y    
Sbjct: 69  EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT- 127

Query: 120 DCIKLLVGNKVD--KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKI 176
               +LVG KVD  K+    VTK+EG +  ++ GC+ +IE S+  ++ + + FE+ V  I
Sbjct: 128 -AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCI 186

Query: 177 LDTP 180
               
Sbjct: 187 FSNK 190

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  177 bits (451), Expect = 3e-53
 Identities = 40/191 (20%), Positives = 67/191 (35%), Gaps = 15/191 (7%)

Query: 2   DSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYV----- 55
             S           K+ +IGD   GK+SLL     + F  + S T G++   K       
Sbjct: 29  ARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKG 88

Query: 56  ---DVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEI 112
              D   K+     WD  GQE        +   +   +++ D     T +N    W + I
Sbjct: 89  LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHY-WLRHI 144

Query: 113 DLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172
           + Y        ++V NK+D+     + +K+           F   S K    V+   + L
Sbjct: 145 EKYGGK--SPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSL 202

Query: 173 VLKILDTPSLL 183
              +L   S+ 
Sbjct: 203 KSAVLHPDSIY 213

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  159 bits (405), Expect = 1e-49
 Identities = 58/206 (28%), Positives = 100/206 (48%), Gaps = 15/206 (7%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K + +GD  VGK+ +L+ +TS+ F  +  PT+  +F    V V G+ + L +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQE 68

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD-- 131
            +  L    YRGA   ++ + +  + ++ N+   W  E+  ++ N   +  LVG K+D  
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIV--LVGTKLDLR 126

Query: 132 ------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTPSLLA 184
                  +   V+T  +G    ++ G   +IECS+KT+ NV+  F+  +  +L  P    
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPR--R 184

Query: 185 EGSKGLKKNIFKQKPPEADAAASGCC 210
           +     +KN  +     A     GC 
Sbjct: 185 KEVPRRRKNHRRSGCSIASIVCGGCT 210

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  157 bits (400), Expect = 2e-49
 Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 15/175 (8%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K + +GD  VGK+ LL+S+TS+ F  +  PT+  +F    V V G  + L +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQE 67

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD-- 131
            +  L    YRGA   I+ + +  + ++ N+S  W  E+  Y+     +  LVG K+D  
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIV--LVGTKLDLR 125

Query: 132 --------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
                         +T  +G    +  G   +IECS+K++ NV+  F+  +  +L
Sbjct: 126 DDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  158 bits (400), Expect = 5e-49
 Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 17/180 (9%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K++++GD G GK+SLL+ F    F E  +PT+   + +  + V GK + L IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQD 93

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD-- 131
            +  L   +Y  A  +++ +DVT  ++F N+ + W  E++ +        ++VG K D  
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKK--VPIIVVGCKTDLR 151

Query: 132 ----------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
                     +     VT   G   AR  G + ++ECSA+   NV   F+E     L + 
Sbjct: 152 KDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR 211

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  152 bits (386), Expect = 5e-47
 Identities = 56/182 (30%), Positives = 91/182 (50%), Gaps = 20/182 (10%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
               KL+++GD   GK+ LL+ F+ D F E   PT+  +  +  ++V GK+++LA+WDTA
Sbjct: 23  AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTA 81

Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130
           GQE +  L    Y     I+M + +   D+  N+ + W  E+  +  N     +LVGNK 
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKK 139

Query: 131 D------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEE---LVL 174
           D            K  +  V  +EG + A       ++ECSAKT+  V++ FE      L
Sbjct: 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199

Query: 175 KI 176
           ++
Sbjct: 200 QV 201

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  150 bits (380), Expect = 4e-46
 Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 17/189 (8%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
           S   +        K +++GD  VGK+ LL+S+T++ F  E  PT+  D     V V GK 
Sbjct: 19  SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKP 77

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           + L +WDTAGQE +  L    Y      ++ + +    +F N+   W  E+  +  N   
Sbjct: 78  VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN--T 135

Query: 122 IKLLVGNKVD------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQC 168
             +LVG K+D            ++    +T  +G+  A+E G + ++ECSA T+  ++  
Sbjct: 136 PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 195

Query: 169 FEELVLKIL 177
           F+E +  +L
Sbjct: 196 FDEAIRAVL 204

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  150 bits (380), Expect = 6e-46
 Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 17/179 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++GD   GK+ LL+ F+ D F E   PT+  ++ V  ++V GK+++LA+WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  L    Y     I+M + V   D+  N+ + W  E+  +  N     +LV NK D   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPN--VPIILVANKKDLRS 143

Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
                    +  +  V   +G   A       ++ECSAKT+  V++ FE      L   
Sbjct: 144 DEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKR 202

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  146 bits (371), Expect = 7e-45
 Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 15/178 (8%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           K +++GD  VGK+ LL+S+T++ F         D     V V GK + L +WDTAGQE +
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 66

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD---- 131
             L    Y      ++ + +    +F N+   W  E+  +  N     +LVG K+D    
Sbjct: 67  DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN--TPIILVGTKLDLRDD 124

Query: 132 --------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTP 180
                   ++    +T  +G+  A+E G + ++ECSA T+  ++  F+E +  +L  P
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  146 bits (371), Expect = 1e-44
 Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 17/180 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K +++GD  VGK+SL++S+T++ +  E  PT   D     V V G+ ++L + DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQDE 80

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           F  L    Y      ++ + V    +F N+S+ W  EI  +        +LVG + D   
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPK--APIILVGTQSDLRE 138

Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTPS 181
                    K  E+ V ++     A E     +IECSA T+ N+++ F+  ++  +    
Sbjct: 139 DVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSD 198

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  145 bits (368), Expect = 3e-44
 Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 18/186 (9%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGG 59
           +   S      +   K++++GDS  GK++LL  F  D F E   PT+  ++     ++  
Sbjct: 15  VPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDT 73

Query: 60  KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ 119
           ++++L++WDT+G   +  +    Y  +  +++ +D++R +T  ++   W  EI  +  N 
Sbjct: 74  QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN- 132

Query: 120 DCIKLLVGNKVD------------KESERVVTKKEGINFAREYGCL-FIECSAK-TRVNV 165
               LLVG K D               +  V+  +G N A++ G   +IECSA  +  +V
Sbjct: 133 -TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSV 191

Query: 166 QQCFEE 171
           +  F  
Sbjct: 192 RDIFHV 197

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  144 bits (365), Expect = 7e-44
 Identities = 57/189 (30%), Positives = 95/189 (50%), Gaps = 17/189 (8%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
            SS +      + K +++GD  VGK+ LL+S+ +D F EE  PT+  D     V VGGK+
Sbjct: 7   RSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQ 65

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
             L ++DTAGQE +  L    Y      ++ + V    +F N+ + W  E+  Y+ N   
Sbjct: 66  YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN--V 123

Query: 122 IKLLVGNKVD------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQC 168
             LL+G ++D               E+ +  ++G   A+E G   ++ECSA T+  ++  
Sbjct: 124 PFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTV 183

Query: 169 FEELVLKIL 177
           F+E ++ IL
Sbjct: 184 FDEAIIAIL 192

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  142 bits (359), Expect = 8e-43
 Identities = 41/194 (21%), Positives = 88/194 (45%), Gaps = 18/194 (9%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
               + Q      KL+++GD   GK+++L     D + E   PT+  ++    ++   ++
Sbjct: 16  FQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQR 74

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC 121
           ++L++WDT+G   +  +    Y  +  +++ +D++R +T  +    W  EI  Y  +   
Sbjct: 75  VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS--T 132

Query: 122 IKLLVGNKVD------------KESERVVTKKEGINFAREYGCL-FIECSAKTR-VNVQQ 167
             LL+G K D             + +  ++ ++G   A++ G   ++E SA T   ++  
Sbjct: 133 RVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHS 192

Query: 168 CFEELVLKILDTPS 181
            F    +  L+ PS
Sbjct: 193 IFRTASMLCLNKPS 206

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  138 bits (350), Expect = 9e-42
 Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 18/171 (10%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++++GDS  GK++LL  F  D F E   PT+  ++     ++  ++++L++WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 67

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           +  +    Y  +  +++ +D++R +T  ++   W  EI  +  N     LLVG K D   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN--TKMLLVGCKSDLRT 125

Query: 132 ---------KESERVVTKKEGINFAREYGCL-FIECSAK-TRVNVQQCFEE 171
                       +  V+  +G N A++ G   +IECSA  +  +V+  F  
Sbjct: 126 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 176

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  117 bits (293), Expect = 8e-32
 Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 15/193 (7%)

Query: 1   MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK 60
             ++    +    L K +++GD  VGK+ LL+S+T++ F         D     V V GK
Sbjct: 142 KKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGK 201

Query: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD 120
            + L +WDTAG E +  L    Y      ++ + +    +F ++   W  E+  +  N  
Sbjct: 202 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTP 261

Query: 121 CIKLLVGNKVD------------KESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQ 167
            I  LVG K+D            ++    +T  +G+  A+E G + ++ECSA T+  ++ 
Sbjct: 262 II--LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKT 319

Query: 168 CFEELVLKILDTP 180
            F+E +  +L  P
Sbjct: 320 VFDEAIRAVLCPP 332

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  108 bits (272), Expect = 2e-29
 Identities = 39/221 (17%), Positives = 66/221 (29%), Gaps = 67/221 (30%)

Query: 21  GDSGVGKSSLLLSF---TSDNF-EELSPTIG-VDFKVKYVD--------------VGGKK 61
           G  G+GKS L   F   ++D F  + +  +   DF  + V+                  +
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 62  LKLAIW-------DTAGQERFRTLTSSYYRGA---------------------------- 86
            K+ I        D   Q    T    Y + A                            
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 87  ---------QGIIMVYDVTRRD--TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135
                     G ++  DV+R     F +    +   +           ++V  K D+  E
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLK-FVSNLYNQLAKTKKPIVVVLTKCDEGVE 213

Query: 136 RVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           R +        +++     +E SA++ VNV   F  LV  I
Sbjct: 214 RYIRDAHTFALSKK-NLQVVETSARSNVNVDLAFSTLVQLI 253

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 92.1 bits (229), Expect = 2e-23
 Identities = 34/182 (18%), Positives = 59/182 (32%), Gaps = 22/182 (12%)

Query: 15  FKLLMIGDSGVGKSSLL----LSFTSDNFEEL-------SPTIGVDF-KVKYVDVGGKKL 62
           FK++  G    GK++ L             E+         T+  DF  +   +V G K 
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 63  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLS--DVWAKEIDLYSTNQD 120
           +  ++   GQ  +        RG  GI+ V D        N        + +  Y    D
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134

Query: 121 CIKLLVG-NKVDKE---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            + +++  NK D        +V          E     +E  A     V +  +E+   +
Sbjct: 135 DVPIVIQVNKRDLPDALPVEMVRAV----VDPEGKFPVLEAVATEGKGVFETLKEVSRLV 190

Query: 177 LD 178
           L 
Sbjct: 191 LA 192

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 83.5 bits (207), Expect = 2e-20
 Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 20/178 (11%)

Query: 11  FDYLF------KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKL 64
           FD L+      ++L++G  G GK+++L            PTIG  F V+ +    K LKL
Sbjct: 9   FDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIG--FNVETLSY--KNLKL 64

Query: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAK---EIDLYSTNQDC 121
            +WD  GQ   R     YY     +I V D T +D  +  S        E +L    QD 
Sbjct: 65  NVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEEL----QDA 120

Query: 122 IKLLVGNKVDKE---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
             L+  NK D+    S   V+K+  +   ++     +  SA     + +  + L+  I
Sbjct: 121 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 82.7 bits (205), Expect = 4e-20
 Identities = 39/191 (20%), Positives = 77/191 (40%), Gaps = 28/191 (14%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            K++++G    GK+++L  F+ +     SPTIG    V+ + +     +  +WD  GQE 
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG--SNVEEIVI--NNTRFLMWDIGGQES 72

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAK---EIDLYSTNQDCIKLLVGNKVD 131
            R+  ++YY   + +I+V D T R+  +   +   K     DL    +    L+  NK D
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL----RKAGLLIFANKQD 128

Query: 132 KE---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSK 188
            +   +   +++   +   +++      C A T   + Q  E ++               
Sbjct: 129 VKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM--------------S 174

Query: 189 GLKKNIFKQKP 199
            LK  +     
Sbjct: 175 RLKIRLEHHHH 185

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 81.5 bits (202), Expect = 8e-20
 Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 20/168 (11%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++L++G  G GK+++L            PTIG  F V+ V    K LK  +WD  G   
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGLTS 63

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWA------KEIDLYSTNQDCIKLLVGN 128
            R     YY     +I V D   RD    +    +      +E +L    +  I ++  N
Sbjct: 64  IRPYWRCYYSNTDAVIYVVDSCDRD---RIGISKSELVAMLEEEEL----RKAILVVFAN 116

Query: 129 KVDKE---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
           K D E   +   +    G+   ++      + SA     + +  E LV
Sbjct: 117 KQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 164

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 81.2 bits (201), Expect = 2e-19
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 19/177 (10%)

Query: 11  FDYLF-----KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLA 65
           F  +F     ++LM+G    GK+++L            PTIG  F V+ V+   K +   
Sbjct: 21  FSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNICFT 76

Query: 66  IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAK---EIDLYSTNQDCI 122
           +WD  GQ++ R L   Y++  QG+I V D   R+     +D   K   E +L    +D +
Sbjct: 77  VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDEL----RDAV 132

Query: 123 KLLVGNKVDKE---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            L+  NK D         +T K G+   R          A     +    + L  ++
Sbjct: 133 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 80.3 bits (199), Expect = 2e-19
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 14/167 (8%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           ++LM+G    GK+++L            PTIG  F V+ V+   K +   +WD  GQ++ 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKI 57

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAK---EIDLYSTNQDCIKLLVGNKVDK 132
           R L   Y++  QG+I V D   R+      +   +   E +L    +D + L+  NK D 
Sbjct: 58  RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL----RDAVLLVFANKQDL 113

Query: 133 E---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
               +   +T K G++  R          A +   + +  + L  ++
Sbjct: 114 PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 80.8 bits (200), Expect = 2e-19
 Identities = 41/189 (21%), Positives = 80/189 (42%), Gaps = 21/189 (11%)

Query: 1   MDSSSASQQEFDYLF-------KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVK 53
           M SS         L        K++++G    GK+++L  F+ +     SPTIG    V+
Sbjct: 1   MGSSHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG--SNVE 58

Query: 54  YVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAK--- 110
            + +     +  +WD  GQE  R+  ++YY   + +I+V D T R+  +   +   K   
Sbjct: 59  EIVI--NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA 116

Query: 111 EIDLYSTNQDCIKLLVGNKVDKE---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167
             DL    +    L+  NK D +   +   +++   +   +++      C A T   + Q
Sbjct: 117 HEDL----RKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ 172

Query: 168 CFEELVLKI 176
             E ++ ++
Sbjct: 173 GLEWMMSRL 181

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 80.4 bits (199), Expect = 3e-19
 Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 14/168 (8%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            +LLM+G    GK+++L  F  ++ + +SPT+G  F +K ++   +  KL IWD  GQ+ 
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG--FNIKTLEH--RGFKLNIWDVGGQKS 74

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAK---EIDLYSTNQDCIKLLVGNKVD 131
            R+   +Y+    G+I V D   R    +          E  L         L+  NK D
Sbjct: 75  LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL----AGATLLIFANKQD 130

Query: 132 KE---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
                S   + +   ++  R +      CSA T  ++    + L+  I
Sbjct: 131 LPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 79.2 bits (196), Expect = 9e-19
 Identities = 37/168 (22%), Positives = 67/168 (39%), Gaps = 20/168 (11%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+S+L      +     PT+G    ++ +    K +   +WD  GQ  
Sbjct: 23  IRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVG--VNLETLQY--KNISFEVWDLGGQTG 78

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWA------KEIDLYSTNQDCIKLLVGN 128
            R     Y+     +I V D T RD    +            E +L    +  + L+  N
Sbjct: 79  VRPYWRCYFSDTDAVIYVVDSTDRD---RMGVAKHELYALLDEDEL----RKSLLLIFAN 131

Query: 129 KVDKE---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
           K D     SE  + ++ G++         ++ S+KT   + +  + LV
Sbjct: 132 KQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLV 179

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 77.7 bits (192), Expect = 3e-18
 Identities = 40/192 (20%), Positives = 73/192 (38%), Gaps = 23/192 (11%)

Query: 1   MDSSSASQQEFDYLFK-------LLMIGDSGVGKSSLL--LSFTSDNFEELSPTIGVDFK 51
           M SS         L         +L +G    GK++++  L  ++   + + PTIG  F 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FS 58

Query: 52  VKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTF----TNLSDV 107
           ++        L   ++D +GQ R+R L   YY+  Q II V D + R         L  +
Sbjct: 59  IEKFKS--SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTL 116

Query: 108 WAKEIDLYSTNQDCIKLLVGNKVDKE---SERVVTKKEGINFAREYGCLFIECSAKTRVN 164
                D+   ++    L   NK+D     +   V++   +   ++         A     
Sbjct: 117 LNHP-DI--KHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEG 173

Query: 165 VQQCFEELVLKI 176
           +Q+  + L  +I
Sbjct: 174 LQEGVDWLQDQI 185

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 77.2 bits (191), Expect = 4e-18
 Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 14/168 (8%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++L++G    GK++LL    S++   ++PT G  F +K V    +  KL +WD  GQ +
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQS--QGFKLNVWDIGGQRK 72

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTN---QDCIKLLVGNKVD 131
            R    SY+     +I V D   R  F    +   +E+              L+  NK D
Sbjct: 73  IRPYWRSYFENTDILIYVIDSADRKRF----EETGQELTELLEEEKLSCVPVLIFANKQD 128

Query: 132 KE---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
                    + +   ++  R+       CSA T   VQ     +   +
Sbjct: 129 LLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 73.8 bits (182), Expect = 1e-16
 Identities = 40/178 (22%), Positives = 77/178 (43%), Gaps = 19/178 (10%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKK 61
               S++E     +L ++G    GK++ +    S  F E++ PT+G  F ++ +  G   
Sbjct: 15  VPRGSKEEM----ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVT 68

Query: 62  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDL---YSTN 118
           +K  +WD  GQ RFR++   Y RG   I+ + D   ++      +    E+         
Sbjct: 69  IK--LWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKI----EASKNELHNLLDKPQL 122

Query: 119 QDCIKLLVGNKVDKE---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
           Q    L++GNK D      E+ + +K  ++  ++        S K + N+    + L+
Sbjct: 123 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 180

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 73.4 bits (181), Expect = 2e-16
 Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 25/173 (14%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           KLL +G    GK++LL    +D    L PT       + + +    +K   +D  G  + 
Sbjct: 25  KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWH--PTSEELAI--GNIKFTTFDLGGHIQA 80

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS-----TNQDCIKLLVGNKV 130
           R L   Y+    GI+ + D    + F       A+  +L +       +D   +++GNK+
Sbjct: 81  RRLWKDYFPEVNGIVFLVDAADPERFDE-----ARV-ELDALFNIAELKDVPFVILGNKI 134

Query: 131 DKE---SERVVTKKEGINFAREYGCLFIE-------CSAKTRVNVQQCFEELV 173
           D     SE  +    G+        +  +       CS   R    + F+ L 
Sbjct: 135 DAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 187

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 72.7 bits (179), Expect = 3e-16
 Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 26/176 (14%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           KL+ +G    GK++LL     D   +  PT+      + + + G  +    +D  G  + 
Sbjct: 27  KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLH--PTSEELTIAG--MTFTTFDLGGHIQA 82

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDL---YSTNQDCIKLLVGNKVDK 132
           R +  +Y     GI+ + D    +          +E+D      T  +   L++GNK+D+
Sbjct: 83  RRVWKNYLPAINGIVFLVDCADHERL----LESKEELDSLMTDETIANVPILILGNKIDR 138

Query: 133 E---SERVVTKKEGINFAREYGCLF------------IECSAKTRVNVQQCFEELV 173
               SE  + +  G+                        CS   R    + F  + 
Sbjct: 139 PEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 194

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 73.1 bits (179), Expect = 1e-15
 Identities = 36/197 (18%), Positives = 80/197 (40%), Gaps = 22/197 (11%)

Query: 16  KLLMIGDSGVGKSS----LLLSFTSDNFEELSPTIGVDFK-VKYVDVGGKKLKLAIWDTA 70
           KLL++G SG GKSS    +  ++++ +   L  TI V+   +++       + L +WD  
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF----LGNMTLNLWDCG 60

Query: 71  GQERF-----RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLL 125
           GQ+ F            ++  Q +I V+DV   +   ++         L   + D    +
Sbjct: 61  GQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFV 120

Query: 126 VGNKVD--KESERVVTKKEGINFARE------YGCLFIECSAKTRVNVQQCFEELVLKIL 177
           + +K+D  +  +R    +  +    E      +  L    ++    ++ + + ++V  ++
Sbjct: 121 LLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLI 180

Query: 178 DTPSLLAEGSKGLKKNI 194
              S      K  K+ +
Sbjct: 181 PNMSNHQSNLKKFKEIM 197

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 69.6 bits (170), Expect = 4e-15
 Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 17/130 (13%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEE----LSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71
           ++L++G    GKSS+               L  T         +      +   IWD  G
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNK--IYKDDISNSS-FVNFQIWDFPG 78

Query: 72  QERFRTLTS---SYYRGAQGIIMVYDVTRR--DTFTNLSDVWAKEIDLYSTNQDCIKLLV 126
           Q  F   T      +RG   +I V D      +  T L      +    + +   +   V
Sbjct: 79  QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHI-TVSKAYKVNPD---MNFEV 134

Query: 127 -GNKVDKESE 135
             +KVD  S+
Sbjct: 135 FIHKVDGLSD 144

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 70.7 bits (173), Expect = 7e-15
 Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 20/178 (11%)

Query: 8   QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIW 67
                   ++LM+G    GK+++L            PTIG  F V+ V+   K +   +W
Sbjct: 159 GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVW 214

Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWA------KEIDLYSTNQDC 121
           D  GQ++ R L   Y++  QG+I V D   R+    +++          E +L    +D 
Sbjct: 215 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE---RVNEAREELMRMLAEDEL----RDA 267

Query: 122 IKLLVGNKVDKE---SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + L+  NK D     +   +T K G++  R          A +   + +  + L  ++
Sbjct: 268 VLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 325

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 10/122 (8%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKK-LKLAIWDTAGQER 74
            +L +G    GK+ L +   +  + +   +I          V   +   L + D  G E 
Sbjct: 9   AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT--DSSAIYKVNNNRGNSLTLIDLPGHES 66

Query: 75  FR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTN---QDCIKLLV-GNK 129
            R  L   +   A+ ++ V D         + DV      +   +   ++   LL+  NK
Sbjct: 67  LRFQLLDRFKSSARAVVFVVDSA--AFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124

Query: 130 VD 131
            D
Sbjct: 125 QD 126

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 24/141 (17%)

Query: 3   SSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKL 62
           S      +      +++ G    GK+SLL   T+D+      +        Y        
Sbjct: 41  SGGGGSYQP----SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGS 91

Query: 63  KLAIWDTAGQERFRTLTSSYYR----GAQGIIMVYD-VTRRDTFTNLSDVWAKEI-DLYS 116
            + + D  G  + R   S Y +      +G+I + D          L+   A+ + D+ S
Sbjct: 92  GVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPK---KLTTT-AEFLVDILS 147

Query: 117 TNQDCIK-----LLVGNKVDK 132
             +   +     L+  NK + 
Sbjct: 148 ITESSCENGIDILIACNKSEL 168

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 57.4 bits (138), Expect = 4e-10
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 9/124 (7%)

Query: 17  LLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR 76
           +L++G    GKSS+      +     +  +               + LA+ +  GQ  + 
Sbjct: 2   VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFST-LIDLAVMELPGQLNYF 60

Query: 77  TLT---SSYYRGAQGIIMVYDVTR--RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
             +      ++    ++ V D      +  TNL+ +       Y  N      ++ +KVD
Sbjct: 61  EPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEY---AYKVNPSINIEVLIHKVD 117

Query: 132 KESE 135
             SE
Sbjct: 118 GLSE 121

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 56.3 bits (136), Expect = 4e-10
 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 18/126 (14%)

Query: 17  LLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR 76
           +++ G    GK+SLL   T+D+      +        Y         + + D  G  + R
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLR 69

Query: 77  TLTSSYY----RGAQGIIMVYD-VTRRDTFTNLSDVWAKEIDLYSTNQDCIK-----LLV 126
              S Y     +  +G+I + D          L+      +D+ S  +   +     L+ 
Sbjct: 70  YKLSDYLKTRAKFVKGLIFMVDSTVDPK---KLTTTAEFLVDILSITESSCENGIDILIA 126

Query: 127 GNKVDK 132
            NK + 
Sbjct: 127 CNKSEL 132

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-06
 Identities = 29/197 (14%), Positives = 59/197 (29%), Gaps = 46/197 (23%)

Query: 21  GDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS 80
           G  G GK+ + L               +DFK+ ++++        + +   Q+    +  
Sbjct: 157 GVLGSGKTWVALDVCLSY----KVQCKMDFKIFWLNLKNCNSPETVLEML-QKLLYQIDP 211

Query: 81  SYY---RGAQGIIMVYDVTR---RDTFTN---------LSDVWAKEIDLYSTNQDCIKLL 125
           ++      +  I +     +   R    +         L +V   +    + N  C K+L
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-WNAFNLSC-KIL 269

Query: 126 VGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAE 185
                      + T+ + +             SA T  ++      + L   +  SLL  
Sbjct: 270 -----------LTTRFKQVTDFL---------SAATTTHISLDHHSMTLTPDEVKSLLL- 308

Query: 186 GSKGLKKNIFKQKPPEA 202
             K L        P E 
Sbjct: 309 --KYLDCRPQDL-PREV 322

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 33/189 (17%), Positives = 54/189 (28%), Gaps = 52/189 (27%)

Query: 25  VGKSSLL--LSF------------TSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
            GKS+LL  L              T D  EE                     +L   DTA
Sbjct: 244 AGKSTLLNTLLGQERAIVSHMPGTTRDYIEE------------CFIHDKTMFRLT--DTA 289

Query: 71  GQ------------ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTN 118
           G              R    +      A  I+ + D+          D   +  +L + +
Sbjct: 290 GLREAGEEIEHEGIRR----SRMKMAEADLILYLLDLGTERL----DDELTEIRELKAAH 341

Query: 119 QDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
                L V NK+D+ +      +   +     G   I  SA     +    ++ +  ++ 
Sbjct: 342 PAAKFLTVANKLDRAANADALIRAIADGT---GTEVIGISALNGDGIDT-LKQHMGDLVK 397

Query: 179 TPSLLAEGS 187
               L E S
Sbjct: 398 NLDKLHEAS 406

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Length = 301

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 10/78 (12%)

Query: 15 FKLLMIGDSGVGKSSLLLS-FTSDNF---------EELSPTIGVDFKVKYVDVGGKKLKL 64
          F L+++G+SG+GKS+L+ S F +D +         E++  T+ ++     ++  G KL+L
Sbjct: 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRL 78

Query: 65 AIWDTAGQERFRTLTSSY 82
           + DT G          +
Sbjct: 79 TVVDTPGYGDAINCRDCF 96

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 15  FKLLMIGDSGVGKSSLL-----LSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDT 69
           F +L +G++G+GKS+L+       F  +      P + +      +     +LKL I  T
Sbjct: 43  FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVST 102

Query: 70  AG 71
            G
Sbjct: 103 VG 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.98
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.98
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.98
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.98
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.97
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.97
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.97
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.97
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.96
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.96
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.96
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.95
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.94
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.94
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.94
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.94
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.94
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.93
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.93
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.93
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.93
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.93
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.92
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.91
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.91
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.91
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.91
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.91
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.9
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.9
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.9
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.89
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.89
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.89
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.89
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.88
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.88
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.88
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.87
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.87
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.87
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.87
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.87
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.86
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.86
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.86
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.86
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.86
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.86
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.86
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.86
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.86
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.85
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.85
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.85
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.85
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.84
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.84
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.84
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.84
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.84
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.83
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.83
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.83
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.83
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.83
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.83
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.82
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.81
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.81
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.8
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.8
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.8
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.79
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.79
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.79
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.78
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.77
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.77
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.76
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.76
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.76
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.75
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.75
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.74
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.73
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.73
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.72
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.72
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.71
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.69
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.66
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.65
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.64
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.63
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.63
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.62
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.62
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.6
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.56
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.54
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.54
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.53
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.51
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.5
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.49
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.44
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.41
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.4
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.36
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.29
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.24
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.23
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.09
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.94
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.88
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.88
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.88
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.84
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.83
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.79
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.76
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.76
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.75
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.48
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.33
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.32
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.27
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.14
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.04
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.04
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.01
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.9
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.89
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.88
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.76
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.54
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.45
2xxa_A	433	Signal recognition particle protein; protein trans	97.44
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.43
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.4
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.38
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.37
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.31
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.31
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.31
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.27
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.27
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.26
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.26
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.24
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.23
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.18
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.18
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.17
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.17
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.16
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.13
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.1
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.09
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.09
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.08
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.07
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.07
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.07
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.07
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.06
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.06
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.06
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.05
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.04
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.04
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.03
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.03
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.03
1g6h_A	257	High-affinity branched-chain amino acid transport	97.03
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.02
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.02
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.01
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.01
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.99
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.97
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.97
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.97
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.96
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.96
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.96
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.95
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.95
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.94
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.94
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.94
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.92
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.92
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.92
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.92
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.92
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.92
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.91
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.91
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.9
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.9
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.89
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.89
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.88
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.88
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.88
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.87
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.87
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.86
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.85
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.85
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.84
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.83
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.83
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.82
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.81
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.81
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.81
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.8
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.79
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.78
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.78
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.77
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.77
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.77
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.76
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.76
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.75
1via_A	175	Shikimate kinase; structural genomics, transferase	96.74
3uc9_A	233	Increased recombination centers protein 6; rossman	96.74
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.73
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.72
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.71
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.7
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.7
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.7
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.7
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.69
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.68
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.68
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.68
3co5_A	143	Putative two-component system transcriptional RES	96.67
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.66
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.66
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.65
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.65
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.64
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.64
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.64
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.63
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.61
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.61
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.61
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.6
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.6
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.6
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.59
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.58
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.57
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.56
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.55
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.55
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.55
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.55
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.53
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.53
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.53
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.52
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.52
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.51
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.51
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.51
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.51
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.51
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.5
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.5
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.48
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.48
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.48
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.47
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.47
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.46
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.45
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.44
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.44
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.43
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.43
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.43
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.41
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.41
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.4
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.39
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.39
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.39
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.37
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.37
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.37
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.36
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.32
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.31
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.3
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.29
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.28
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.27
3bos_A	242	Putative DNA replication factor; P-loop containing	96.27
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.24
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.23
2og2_A	359	Putative signal recognition particle receptor; nuc	96.23
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.23
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.2
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.19
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.18
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.18
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.17
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.15
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.12
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.12
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.11
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.1
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.08
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.08
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.06
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.05
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.04
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.04
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.03
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.02
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.02
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.01
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.01
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.97
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.94
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.92
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.91
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.87
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.85
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.83
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.83
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.83
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.8
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.8
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.79
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.77
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.75
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.75
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.74
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.72
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.72
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.71
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.7
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.7
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.69
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.69
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.69
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.65
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.65
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.64
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.64
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.62
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.61
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.61
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.59
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.59
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.59
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.57
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.52
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.51
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.5
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.48
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.47
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.46
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.46
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.45
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.44
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.43
2qgz_A	308	Helicase loader, putative primosome component; str	95.41
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.41
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.41
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.35
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.34
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.33
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.33
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.32
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.32
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.31
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.29
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.29
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.28
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.28
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.28
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.27
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.27
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.26
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.23
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.19
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.17

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=8.7e-41  Score=247.39  Aligned_cols=206  Identities=34%  Similarity=0.580  Sum_probs=142.8

Q ss_pred             CCCCcccccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccch
Q 028329            1 MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLT   79 (210)
Q Consensus         1 ~~s~~~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~   79 (210)
                      |.++... .+..+.+||+|+|++|||||||+++|+.+.|...+ +|.+.++....+..++..+.+.||||+|++.+..++
T Consensus         1 ms~~~~~-~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~   79 (216)
T 4dkx_A            1 MSTGGDF-GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLI   79 (216)
T ss_dssp             -------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGH
T ss_pred             CCCCCCC-CCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHH
Confidence            4444433 23346699999999999999999999999987665 488888888888999999999999999999999999


Q ss_pred             hhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEcc
Q 028329           80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  159 (210)
                      ..+++++|++++|||+++.++|+.+.. |+..+.... ..++|++|||||+|+...+.+..+++..++..+++.|++|||
T Consensus        80 ~~~~~~a~~~ilv~di~~~~Sf~~i~~-~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SA  157 (216)
T 4dkx_A           80 PSYIRDSAAAVVVYDITNVNSFQQTTK-WIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSA  157 (216)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBT
T ss_pred             HHHhccccEEEEEeecchhHHHHHHHH-HHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeC
Confidence            999999999999999999999999998 777776543 457999999999999888899999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCcccccccCcccccccCCCCccCccCCCCC
Q 028329          160 KTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC  210 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
                      ++|.||+++|.+|++.+.+............ ......+++++++.+++||
T Consensus       158 ktg~nV~e~F~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~C~  207 (216)
T 4dkx_A          158 KAGYNVKQLFRRVAAALPGMESTQDRSREDM-IDIKLEKPQEQPVSEGGCS  207 (216)
T ss_dssp             TTTBSHHHHHHHHHHHC----------------------------------
T ss_pred             CCCcCHHHHHHHHHHHHHhhhcccccccccc-cccccCCCCCCCCCCCCCc
Confidence            9999999999999999876554433322221 2223344455556666774

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=2e-36  Score=222.56  Aligned_cols=178  Identities=34%  Similarity=0.526  Sum_probs=147.4

Q ss_pred             CCCCcccccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccch
Q 028329            1 MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLT   79 (210)
Q Consensus         1 ~~s~~~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~   79 (210)
                      |.+......+....++|+|+|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||+..+...+
T Consensus         1 m~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   79 (206)
T 2bov_A            1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIR   79 (206)
T ss_dssp             ----------CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHH
T ss_pred             CCcccccCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHH
Confidence            44445555566778999999999999999999999888766555 444433 4567788888999999999999999999


Q ss_pred             hhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEcc
Q 028329           80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  159 (210)
                      ..++..+|++++|||+++..++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||
T Consensus        80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (206)
T 2bov_A           80 DNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSA  158 (206)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECT
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeC
Confidence            999999999999999999999999887 7777776665668999999999999777777888889999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCC
Q 028329          160 KTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      +++.|++++|++|.+.+.+..
T Consensus       159 ~~g~gi~~l~~~l~~~i~~~~  179 (206)
T 2bov_A          159 KTRANVDKVFFDLMREIRARK  179 (206)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHcc
Confidence            999999999999999997653

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=1.8e-35  Score=217.65  Aligned_cols=171  Identities=51%  Similarity=0.846  Sum_probs=151.2

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      .+..++|+++|++|||||||+++|.+..+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..++..+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v   84 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   84 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence            467899999999999999999999998876544 4777778778888899999999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  169 (210)
                      ++|||++++.++..+.. |+..+.... ..++|++||+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus        85 ilv~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  162 (206)
T 2bcg_Y           85 IIVYDVTDQESFNGVKM-WLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF  162 (206)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999888 877776543 4578999999999998777778888889999999999999999999999999


Q ss_pred             HHHHHHHHcCCCcc
Q 028329          170 EELVLKILDTPSLL  183 (210)
Q Consensus       170 ~~l~~~~~~~~~~~  183 (210)
                      .+|.+.+.+.....
T Consensus       163 ~~l~~~i~~~~~~~  176 (206)
T 2bcg_Y          163 LTMARQIKESMSQQ  176 (206)
T ss_dssp             HHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999998765443

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-35  Score=218.05  Aligned_cols=174  Identities=43%  Similarity=0.735  Sum_probs=143.6

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      ...+..++|+|+|++|||||||+++|.+..+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus         8 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   87 (223)
T 3cpj_B            8 YDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAV   87 (223)
T ss_dssp             --CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCC
T ss_pred             CCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCC
Confidence            34577899999999999999999999998886554 47777777777888998899999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  167 (210)
                      ++|+|||++++.++..+.. |+..+.... ..++|++||+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus        88 ~vilV~D~~~~~s~~~~~~-~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  165 (223)
T 3cpj_B           88 GALIVYDISKSSSYENCNH-WLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDK  165 (223)
T ss_dssp             EEEEEEC-CCHHHHHHHHH-HHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHH
T ss_pred             EEEEEEeCCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999887 887776643 45789999999999977667777888899999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCccc
Q 028329          168 CFEELVLKILDTPSLLA  184 (210)
Q Consensus       168 ~~~~l~~~~~~~~~~~~  184 (210)
                      +|++|.+.+.+......
T Consensus       166 l~~~l~~~i~~~~~~~~  182 (223)
T 3cpj_B          166 AFEELINTIYQKVSKHQ  182 (223)
T ss_dssp             HHHHHHHHHTTCC----
T ss_pred             HHHHHHHHHHHHhhhcc
Confidence            99999999987765543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=4.7e-34  Score=204.54  Aligned_cols=167  Identities=29%  Similarity=0.429  Sum_probs=136.0

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc--cccchhhcccCccEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER--FRTLTSSYYRGAQGI   89 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~~~~~~~~d~~   89 (210)
                      ...+||+++|++|||||||+++|++..+...+++.+.++....+.+++..+.+.+||+||...  +......+++.+|++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            357999999999999999999999998877777777787777788899999999999999887  566677788999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  169 (210)
                      ++|||++++.++..+.. |...+.......++|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|
T Consensus        82 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           82 VIVYSIADRGSFESASE-LRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            99999999999999987 77766654445579999999999998777777888888888899999999999999999999


Q ss_pred             HHHHHHHHcC
Q 028329          170 EELVLKILDT  179 (210)
Q Consensus       170 ~~l~~~~~~~  179 (210)
                      ++|.+.+.++
T Consensus       161 ~~l~~~~~~~  170 (175)
T 2nzj_A          161 EGVVRQLRLR  170 (175)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988653

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=6.3e-34  Score=206.27  Aligned_cols=169  Identities=33%  Similarity=0.513  Sum_probs=143.8

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...+||+++|++|||||||+++|.++.+...++....+.....+.+++..+.+.+||+||++.+...+..++..+|++++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            35799999999999999999999998877666544445556667789999999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  171 (210)
                      |||++++.++..+.. |...+.......+.|+++|+||+|+. .+....+.+..++...+++++++||+++.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A           82 VFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            999999999999888 77777766666789999999999996 4456667788899999999999999999999999999


Q ss_pred             HHHHHHcCCCc
Q 028329          172 LVLKILDTPSL  182 (210)
Q Consensus       172 l~~~~~~~~~~  182 (210)
                      |.+.+.+....
T Consensus       160 l~~~~~~~~~~  170 (189)
T 4dsu_A          160 LVREIRKHKEK  170 (189)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhhhh
Confidence            99999766543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=2.2e-33  Score=204.68  Aligned_cols=172  Identities=53%  Similarity=0.894  Sum_probs=152.5

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      ...+..+||+++|++|||||||+++|++..+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|
T Consensus        11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   90 (196)
T 3tkl_A           11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH   90 (196)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence            44467899999999999999999999998876554 47777888888888999999999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  167 (210)
                      ++++|||++++.+++.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus        91 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  168 (196)
T 3tkl_A           91 GIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ  168 (196)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHH
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            9999999999999999988 888776643 45789999999999988888888889999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCc
Q 028329          168 CFEELVLKILDTPSL  182 (210)
Q Consensus       168 ~~~~l~~~~~~~~~~  182 (210)
                      +|++|.+.+.++...
T Consensus       169 l~~~l~~~i~~~~~~  183 (196)
T 3tkl_A          169 SFMTMAAEIKKRMGP  183 (196)
T ss_dssp             HHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999876543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=2.5e-33  Score=202.35  Aligned_cols=167  Identities=34%  Similarity=0.507  Sum_probs=148.1

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      .....+||+++|++|||||||+++|++..+...+. +.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   92 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG   92 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            34568999999999999999999999888766555 555444 6667889999999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccC-CCCCHHH
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK-TRVNVQQ  167 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~-~~~~i~~  167 (210)
                      +++|||++++.+++.+.. |...+.......++|+++|+||+|+...+.+..+++..++...+++++++||+ ++.|+++
T Consensus        93 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~  171 (183)
T 3kkq_A           93 FLIVYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK  171 (183)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence            999999999999999988 77777665666789999999999998888888899999999999999999999 9999999


Q ss_pred             HHHHHHHHHHc
Q 028329          168 CFEELVLKILD  178 (210)
Q Consensus       168 ~~~~l~~~~~~  178 (210)
                      +|++|.+.+.+
T Consensus       172 l~~~l~~~i~~  182 (183)
T 3kkq_A          172 TFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999998865

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=3.6e-34  Score=210.68  Aligned_cols=169  Identities=36%  Similarity=0.635  Sum_probs=142.9

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ....++|+++|++|||||||+++|++..+...+. +.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            4567999999999999999999999988765444 777778788888888889999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCCceecHHHHHHHHH-HhCCcEEEEccCCCCCH
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYST---NQDCIKLLVGNKVDKESERVVTKKEGINFAR-EYGCLFIECSAKTRVNV  165 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i  165 (210)
                      |+|||++++.++..+.. |+..+.....   ..++|+++|+||+|+. .+.+..+++..++. ..+++++++||+++.|+
T Consensus        85 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  162 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV  162 (207)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            99999999999999877 7776655432   1468999999999997 44556667777777 56788999999999999


Q ss_pred             HHHHHHHHHHHHcCCC
Q 028329          166 QQCFEELVLKILDTPS  181 (210)
Q Consensus       166 ~~~~~~l~~~~~~~~~  181 (210)
                      +++|++|.+.+.+...
T Consensus       163 ~~l~~~l~~~~~~~~~  178 (207)
T 1vg8_A          163 EQAFQTIARNALKQET  178 (207)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999987553

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=2.3e-33  Score=202.25  Aligned_cols=169  Identities=29%  Similarity=0.428  Sum_probs=146.4

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ....++|+++|++|||||||+++|+++.+...+. +.+.++ ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY   81 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence            3467999999999999999999999888765554 666655 66678899999999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  169 (210)
                      ++|||++++++++.+.. |...+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus        82 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  160 (181)
T 3t5g_A           82 ILVYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF  160 (181)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Confidence            99999999999999988 77777665666689999999999998888888999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCC
Q 028329          170 EELVLKILDTPS  181 (210)
Q Consensus       170 ~~l~~~~~~~~~  181 (210)
                      +++.+.+.+...
T Consensus       161 ~~l~~~~~~~~~  172 (181)
T 3t5g_A          161 RRIILEAEKMDG  172 (181)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHHHHHhcC
Confidence            999999987664

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=3.8e-33  Score=202.64  Aligned_cols=171  Identities=47%  Similarity=0.827  Sum_probs=149.8

Q ss_pred             cccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccC
Q 028329            7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG   85 (210)
Q Consensus         7 ~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (210)
                      .....+..++|+++|++|||||||+++|++..+...+ ++.+.++....+..++..+.+.+||+||+..+...+..++..
T Consensus        15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   94 (189)
T 2gf9_A           15 VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRG   94 (189)
T ss_dssp             CCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTT
T ss_pred             CCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccC
Confidence            3445567899999999999999999999998876544 477777877778888889999999999999999999999999


Q ss_pred             ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCH
Q 028329           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNV  165 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  165 (210)
                      +|++++|||++++.+++.+.. |+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|+
T Consensus        95 ~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  172 (189)
T 2gf9_A           95 AMGFLLMYDIANQESFAAVQD-WATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINV  172 (189)
T ss_dssp             CSEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence            999999999999999999887 777776643 457899999999999776777778889999999999999999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 028329          166 QQCFEELVLKILDT  179 (210)
Q Consensus       166 ~~~~~~l~~~~~~~  179 (210)
                      +++|++|.+.+.++
T Consensus       173 ~~l~~~l~~~i~~~  186 (189)
T 2gf9_A          173 KQVFERLVDVICEK  186 (189)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=207.64  Aligned_cols=171  Identities=41%  Similarity=0.775  Sum_probs=143.2

Q ss_pred             ccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028329            8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA   86 (210)
Q Consensus         8 ~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (210)
                      +++.+..+||+++|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..+++.+
T Consensus        23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  102 (201)
T 2hup_A           23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA  102 (201)
T ss_dssp             ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred             ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence            355567899999999999999999999988876544 4666677777788888889999999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCCCH
Q 028329           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNV  165 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i  165 (210)
                      |++++|||++++.+++.+.. |+..+.... ..++|++||+||+|+...+.+..+++..++...++ +++++||+++.|+
T Consensus       103 d~iilv~D~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi  180 (201)
T 2hup_A          103 NGAILAYDITKRSSFLSVPH-WIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNV  180 (201)
T ss_dssp             SEEEEEEETTBHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred             CEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCH
Confidence            99999999999999999887 877776643 46799999999999987677788888999999999 8999999999999


Q ss_pred             HHHHHHHHHHHHcCC
Q 028329          166 QQCFEELVLKILDTP  180 (210)
Q Consensus       166 ~~~~~~l~~~~~~~~  180 (210)
                      +++|++|.+.+.++.
T Consensus       181 ~~l~~~l~~~i~~~~  195 (201)
T 2hup_A          181 EEAFLRVATELIMRH  195 (201)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999987643

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=4.9e-33  Score=202.82  Aligned_cols=174  Identities=29%  Similarity=0.547  Sum_probs=146.5

Q ss_pred             cccccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcc
Q 028329            5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYY   83 (210)
Q Consensus         5 ~~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~   83 (210)
                      ..........+||+++|++|||||||+++|+++.+...+. +.+.++. ..+.+++..+.+.+||+||++.+...+..++
T Consensus        14 ~~~~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   92 (194)
T 3reg_A           14 AGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSY   92 (194)
T ss_dssp             -------CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGC
T ss_pred             cccccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhc
Confidence            3334455678999999999999999999999988765544 6655554 4577889999999999999999999999999


Q ss_pred             cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC--ceecHHHHHHHHHHhCCc-EEEEccC
Q 028329           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE--RVVTKKEGINFAREYGCL-FIECSAK  160 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~sa~  160 (210)
                      +++|++++|||++++.++..+...|...+...  ..++|+++|+||+|+...  +.+..+++..++...++. ++++||+
T Consensus        93 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  170 (194)
T 3reg_A           93 ADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSV  170 (194)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTT
T ss_pred             cCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecC
Confidence            99999999999999999999866688888764  357999999999999653  667888899999999998 9999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCC
Q 028329          161 TRVNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~~~  181 (210)
                      ++.|++++|+++.+.+.+++.
T Consensus       171 ~~~gi~~l~~~l~~~i~~~~~  191 (194)
T 3reg_A          171 AKIGLNEVFEKSVDCIFSNKP  191 (194)
T ss_dssp             TTBSHHHHHHHHHHHHHCSCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCC
Confidence            999999999999999987654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=2.5e-33  Score=201.37  Aligned_cols=168  Identities=51%  Similarity=0.855  Sum_probs=147.6

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      .+.+..++|+++|++|||||||+++|++..+...+. +.+.++....+.+++..+.+.+||+||+..+...+..+++.+|
T Consensus        10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (179)
T 1z0f_A           10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (179)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence            345678999999999999999999999988765554 7777787888888999999999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  167 (210)
                      ++++|||++++.++..+.. |+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus        90 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  167 (179)
T 1z0f_A           90 GALMVYDITRRSTYNHLSS-WLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVED  167 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             EEEEEEeCcCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999998887 777776543 35789999999999977677778888999999999999999999999999


Q ss_pred             HHHHHHHHHHc
Q 028329          168 CFEELVLKILD  178 (210)
Q Consensus       168 ~~~~l~~~~~~  178 (210)
                      +|+++.+.+.+
T Consensus       168 l~~~l~~~i~~  178 (179)
T 1z0f_A          168 AFLEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHhh
Confidence            99999998854

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.3e-33  Score=202.91  Aligned_cols=174  Identities=61%  Similarity=0.961  Sum_probs=151.3

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      +....++|+++|++|||||||+++|++..+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   90 (195)
T 1x3s_A           11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG   90 (195)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence            3346799999999999999999999998876444 477788888888889999999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  168 (210)
                      +++|||++++.++..+.. |+..+.......++|+++|+||+|+. .+.+..+++..++...+++++++||+++.|++++
T Consensus        91 ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  168 (195)
T 1x3s_A           91 VILVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCA  168 (195)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence            999999999999999887 88887765555689999999999994 4456677788899999999999999999999999


Q ss_pred             HHHHHHHHHcCCCcccc
Q 028329          169 FEELVLKILDTPSLLAE  185 (210)
Q Consensus       169 ~~~l~~~~~~~~~~~~~  185 (210)
                      |++|.+.+.+.......
T Consensus       169 ~~~l~~~~~~~~~~~~~  185 (195)
T 1x3s_A          169 FEELVEKIIQTPGLWES  185 (195)
T ss_dssp             HHHHHHHHHTSGGGTCC
T ss_pred             HHHHHHHHHhhhhhhcc
Confidence            99999999877655443

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=8.8e-34  Score=201.54  Aligned_cols=164  Identities=30%  Similarity=0.405  Sum_probs=122.5

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      .+||+++|++|||||||+++|.+.......++.+.++ ...+.+++..+.+.+||++|+..+...+..++..+|++++||
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   80 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence            4799999999999999999999877665556666655 455688999999999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  173 (210)
                      |++++++++.+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|++|.
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           81 SVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             ETTCHHHHHHHHH-HHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            9999999999988 666666544556899999999999988888888888999999999999999999999999999999


Q ss_pred             HHHHcC
Q 028329          174 LKILDT  179 (210)
Q Consensus       174 ~~~~~~  179 (210)
                      +.+.++
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988654

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.6e-33  Score=204.81  Aligned_cols=169  Identities=42%  Similarity=0.806  Sum_probs=148.6

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      .+.+..+||+++|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus        21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (201)
T 2ew1_A           21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN  100 (201)
T ss_dssp             -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence            34467899999999999999999999988876544 47777888888888999999999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  167 (210)
                      ++++|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus       101 ~~i~v~D~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  178 (201)
T 2ew1_A          101 ALILTYDITCEESFRCLPE-WLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEK  178 (201)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999887 888776643 45789999999999977667778888888888999999999999999999


Q ss_pred             HHHHHHHHHHcC
Q 028329          168 CFEELVLKILDT  179 (210)
Q Consensus       168 ~~~~l~~~~~~~  179 (210)
                      +|.+|.+.+.+.
T Consensus       179 l~~~l~~~i~~~  190 (201)
T 2ew1_A          179 LFLDLACRLISE  190 (201)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.3e-33  Score=198.97  Aligned_cols=170  Identities=44%  Similarity=0.824  Sum_probs=140.1

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCC--CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE--LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA   86 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (210)
                      +..+..++|+++|++|||||||+++|++..+..  ..++.+.++....+.+++..+.+.+||+||++.+...+..++..+
T Consensus         5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   84 (180)
T 2g6b_A            5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA   84 (180)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred             ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence            344678999999999999999999999988742  334777777777778899899999999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  166 (210)
                      |++++|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++
T Consensus        85 d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  162 (180)
T 2g6b_A           85 HALLLLYDVTNKASFDNIQA-WLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVD  162 (180)
T ss_dssp             SEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred             CEEEEEEECCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence            99999999999999999887 777776643 3678999999999998777778888888999999999999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 028329          167 QCFEELVLKILDTP  180 (210)
Q Consensus       167 ~~~~~l~~~~~~~~  180 (210)
                      ++|+++.+.+.++.
T Consensus       163 ~l~~~l~~~~~~~~  176 (180)
T 2g6b_A          163 LAFTAIAKELKRRS  176 (180)
T ss_dssp             HHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-33  Score=206.59  Aligned_cols=167  Identities=29%  Similarity=0.437  Sum_probs=138.6

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...++|+++|++|||||||+++|.++.+...+. +.+.++ ...+..++..+.+.+||+||+..+...+..++..+|+++
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            456999999999999999999999988765443 444333 344567888899999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  169 (210)
                      +|||++++.++..+.. |+..+..... ..++|+++|+||+|+.. +.+..+++..++..++++++++||+++.|++++|
T Consensus        85 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGP-IYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF  162 (199)
T ss_dssp             EEEETTCHHHHHTTHH-HHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence            9999999999999887 6555554322 24689999999999964 4456677788888899999999999999999999


Q ss_pred             HHHHHHHHcCCC
Q 028329          170 EELVLKILDTPS  181 (210)
Q Consensus       170 ~~l~~~~~~~~~  181 (210)
                      ++|.+.+.++..
T Consensus       163 ~~l~~~~~~~~~  174 (199)
T 2gf0_A          163 QELLTLETRRNM  174 (199)
T ss_dssp             HHHHHHCSSSCE
T ss_pred             HHHHHHHhhhhc
Confidence            999998866543

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=1.2e-33  Score=208.89  Aligned_cols=168  Identities=30%  Similarity=0.593  Sum_probs=140.2

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...++|+++|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            467999999999999999999999888765544 555443 445677888899999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--------ecHHHHHHHHHHhCC-cEEEEccCC
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--------VTKKEGINFAREYGC-LFIECSAKT  161 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~sa~~  161 (210)
                      +|||+++++++..+...|+..+....  .++|++||+||+|+...+.        +..+++..++...++ +++++||++
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  163 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT  163 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence            99999999999999855888887653  4799999999999965543        367778888888886 899999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCc
Q 028329          162 RVNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~~~~~~~  182 (210)
                      +.|++++|++|.+.+.+....
T Consensus       164 g~gi~~l~~~l~~~~~~~~~~  184 (212)
T 2j0v_A          164 QQNVKAVFDTAIKVVLQPPRR  184 (212)
T ss_dssp             CTTHHHHHHHHHHHHHCC---
T ss_pred             CCCHHHHHHHHHHHHhhhhhh
Confidence            999999999999999876543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=5.1e-33  Score=202.32  Aligned_cols=170  Identities=49%  Similarity=0.845  Sum_probs=147.3

Q ss_pred             ccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028329            8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA   86 (210)
Q Consensus         8 ~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (210)
                      .......+||+++|++|||||||+++|+++.+...+. +.+.++....+.+++..+.+.+||+||+..+...+..+++.+
T Consensus        15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   94 (191)
T 2a5j_A           15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA   94 (191)
T ss_dssp             CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence            3445678999999999999999999999988765544 667777777788899999999999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  166 (210)
                      |++++|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++
T Consensus        95 d~ii~v~d~~~~~s~~~~~~-~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (191)
T 2a5j_A           95 AGALLVYDITRRETFNHLTS-WLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVE  172 (191)
T ss_dssp             SEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred             CEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999888 777776543 4579999999999997766777888899999999999999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028329          167 QCFEELVLKILDT  179 (210)
Q Consensus       167 ~~~~~l~~~~~~~  179 (210)
                      ++|++|.+.+.++
T Consensus       173 ~l~~~l~~~i~~~  185 (191)
T 2a5j_A          173 EAFINTAKEIYRK  185 (191)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988753

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=7.2e-33  Score=199.46  Aligned_cols=169  Identities=39%  Similarity=0.658  Sum_probs=146.4

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      ......+||+++|++|||||||+++|++..+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|
T Consensus         7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   86 (181)
T 2efe_B            7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   86 (181)
T ss_dssp             ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred             CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence            44567899999999999999999999998876654 47777787788888888999999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  167 (210)
                      ++++|||++++.+++.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus        87 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  164 (181)
T 2efe_B           87 AAIIVFDVTNQASFERAKK-WVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKE  164 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHH
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence            9999999999999999887 777776543 35799999999999987777788888999999999999999999999999


Q ss_pred             HHHHHHHHHHcC
Q 028329          168 CFEELVLKILDT  179 (210)
Q Consensus       168 ~~~~l~~~~~~~  179 (210)
                      +|++|.+.+.+.
T Consensus       165 l~~~l~~~~~~~  176 (181)
T 2efe_B          165 IFYEIARRLPRV  176 (181)
T ss_dssp             HHHHHHHTCC--
T ss_pred             HHHHHHHHHHhc
Confidence            999999877554

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=3e-33  Score=199.32  Aligned_cols=165  Identities=27%  Similarity=0.369  Sum_probs=132.4

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCcccccc-chhhcccCccEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT-LTSSYYRGAQGIIM   91 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i~   91 (210)
                      .+||+++|++|||||||+++|++..+..... +.+.+.....+.+++..+.+.+||++|+..+.. .+..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            5899999999999999999999776654433 555666777778899999999999999988876 66777888999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  171 (210)
                      |||+++++++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  160 (169)
T 3q85_A           82 VFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG  160 (169)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCChHHHHHHHH-HHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence            999999999999988 6666666555568999999999999877888888999999999999999999999999999999


Q ss_pred             HHHHHHcC
Q 028329          172 LVLKILDT  179 (210)
Q Consensus       172 l~~~~~~~  179 (210)
                      +.+.+..+
T Consensus       161 l~~~i~~~  168 (169)
T 3q85_A          161 AVRQIRLR  168 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99988765

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=1e-32  Score=198.44  Aligned_cols=168  Identities=50%  Similarity=0.861  Sum_probs=147.4

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      ..+..+||+++|++|||||||+++|.+..+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..++..+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   84 (181)
T 3tw8_B            5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG   84 (181)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence            4567899999999999999999999988876444 477778888888889999999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  168 (210)
                      +++|||++++.++..+.. |+..+...  ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus        85 ~i~v~d~~~~~s~~~~~~-~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  161 (181)
T 3tw8_B           85 VIVVYDVTSAESFVNVKR-WLHEINQN--CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEM  161 (181)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHH--CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            999999999999999887 77777654  357999999999999877778888889999999999999999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028329          169 FEELVLKILDTP  180 (210)
Q Consensus       169 ~~~l~~~~~~~~  180 (210)
                      |++|.+.+.+..
T Consensus       162 ~~~l~~~~~~~~  173 (181)
T 3tw8_B          162 FNCITELVLRAK  173 (181)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999887654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=5.8e-33  Score=197.74  Aligned_cols=164  Identities=40%  Similarity=0.692  Sum_probs=144.7

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...++|+++|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..++..+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            46799999999999999999999988876654 47788887888888999999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      +|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|+
T Consensus        84 ~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  161 (170)
T 1r2q_A           84 VVYDITNEESFARAKN-WVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM  161 (170)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999999887 777666532 45799999999999976667777888899999999999999999999999999


Q ss_pred             HHHHHHH
Q 028329          171 ELVLKIL  177 (210)
Q Consensus       171 ~l~~~~~  177 (210)
                      +|.+.+.
T Consensus       162 ~i~~~~~  168 (170)
T 1r2q_A          162 AIAKKLP  168 (170)
T ss_dssp             HHHHTSC
T ss_pred             HHHHHHh
Confidence            9988764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=5.5e-33  Score=198.04  Aligned_cols=166  Identities=37%  Similarity=0.717  Sum_probs=139.2

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      .+..+||+++|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            356799999999999999999999988876544 4777777777788888899999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  169 (210)
                      ++|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus        83 i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKN-WVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF  160 (170)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence            99999999999999887 777776543 3468999999999997777777888899999999999999999999999999


Q ss_pred             HHHHHHHHc
Q 028329          170 EELVLKILD  178 (210)
Q Consensus       170 ~~l~~~~~~  178 (210)
                      ++|.+.+.+
T Consensus       161 ~~l~~~~~~  169 (170)
T 1z08_A          161 LDLCKRMIE  169 (170)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhh
Confidence            999998865

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=7.6e-33  Score=196.63  Aligned_cols=164  Identities=35%  Similarity=0.566  Sum_probs=140.4

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ..++|+++|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||+..+...+..++..+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            46899999999999999999999888765554 444433 4556788888999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  171 (210)
                      |||+++++++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (168)
T 1u8z_A           82 VFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence            999999999999987 7777776665668999999999999776677788889999999999999999999999999999


Q ss_pred             HHHHHHc
Q 028329          172 LVLKILD  178 (210)
Q Consensus       172 l~~~~~~  178 (210)
                      +.+.+.+
T Consensus       161 l~~~i~~  167 (168)
T 1u8z_A          161 LMREIRA  167 (168)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=6.6e-33  Score=200.71  Aligned_cols=165  Identities=18%  Similarity=0.334  Sum_probs=140.2

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      ......+||+++|++|||||||+++|+++.+...+.+.+..+ ...+.+++..+.+.+||++|++.+.     +++.+|+
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~   88 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA   88 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence            445678999999999999999999999998876555333333 4677889999999999999987766     6778999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC--CCCceecHHHHHHHHHHhC-CcEEEEccCCCCCH
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK--ESERVVTKKEGINFAREYG-CLFIECSAKTRVNV  165 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~--~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i  165 (210)
                      +++|||++++.+++.+.. |+..+.......++|+++|+||+|+  ...+.+..+++..++...+ ++++++||+++.|+
T Consensus        89 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv  167 (184)
T 3ihw_A           89 VVFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV  167 (184)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence            999999999999999988 8888876554467999999999999  3456678888999999987 89999999999999


Q ss_pred             HHHHHHHHHHHHcCC
Q 028329          166 QQCFEELVLKILDTP  180 (210)
Q Consensus       166 ~~~~~~l~~~~~~~~  180 (210)
                      +++|+++.+.+.+.+
T Consensus       168 ~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          168 ERVFQDVAQKVVALR  182 (184)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999887654

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=4.6e-33  Score=203.34  Aligned_cols=170  Identities=27%  Similarity=0.366  Sum_probs=141.4

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc-chhhcccCccE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT-LTSSYYRGAQG   88 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~   88 (210)
                      ....+||+++|++|||||||+++|++.... ...++.+.+.....+.+++..+.+.+||++|...+.. ++..+++.+|+
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~   99 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA   99 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence            356799999999999999999999765432 2234445555566678899999999999999987765 67778889999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  168 (210)
                      +++|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus       100 ~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l  178 (195)
T 3cbq_A          100 FLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL  178 (195)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence            999999999999999988 7777766544467999999999999877778888889999999999999999999999999


Q ss_pred             HHHHHHHHHcCCC
Q 028329          169 FEELVLKILDTPS  181 (210)
Q Consensus       169 ~~~l~~~~~~~~~  181 (210)
                      |+++.+.+.+...
T Consensus       179 f~~l~~~i~~~~~  191 (195)
T 3cbq_A          179 FEGAVRQIRLRRG  191 (195)
T ss_dssp             HHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999876543

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5e-33  Score=205.21  Aligned_cols=169  Identities=26%  Similarity=0.364  Sum_probs=137.7

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCC--CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc-cccchhhcccCc
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF--EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER-FRTLTSSYYRGA   86 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~   86 (210)
                      .....+||+++|++|||||||+++|++...  ...+++.+.++....+.+++..+.+.+||++|... +..+...+++.+
T Consensus        33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a  112 (211)
T 2g3y_A           33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG  112 (211)
T ss_dssp             --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence            345679999999999999999999996543  44445566666667778899999999999999776 445666778899


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  166 (210)
                      |++++|||+++..+|+.+.. |...+.......++|++||+||+|+...+.+..+++..++...+++++++||++|.|++
T Consensus       113 ~~~ilVydvt~~~sf~~~~~-~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~  191 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK  191 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             CEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999987 76666543334579999999999997666777778888888899999999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028329          167 QCFEELVLKILDT  179 (210)
Q Consensus       167 ~~~~~l~~~~~~~  179 (210)
                      ++|++|.+.+..+
T Consensus       192 elf~~l~~~i~~~  204 (211)
T 2g3y_A          192 ELFEGIVRQVRLR  204 (211)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=3.2e-33  Score=201.85  Aligned_cols=167  Identities=48%  Similarity=0.899  Sum_probs=119.3

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      .+..++|+++|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            457899999999999999999999988765433 3667677777788888899999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  169 (210)
                      ++|||++++.+++.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus        85 i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  162 (183)
T 2fu5_C           85 MLVYDITNEKSFDNIRN-WIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF  162 (183)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999887 877776542 3578999999999998777778888899999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q 028329          170 EELVLKILDT  179 (210)
Q Consensus       170 ~~l~~~~~~~  179 (210)
                      .+|.+.+.++
T Consensus       163 ~~l~~~i~~~  172 (183)
T 2fu5_C          163 FTLARDIKAK  172 (183)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988754

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=1.4e-32  Score=198.82  Aligned_cols=169  Identities=47%  Similarity=0.811  Sum_probs=148.7

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      ..+..++|+++|++|||||||+++|++..+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..++..+|+
T Consensus         6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   85 (186)
T 2bme_A            6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG   85 (186)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence            3467899999999999999999999998876544 477777877888889988999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  168 (210)
                      +++|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus        86 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  163 (186)
T 2bme_A           86 ALLVYDITSRETYNALTN-WLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEA  163 (186)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence            999999999999999887 777776533 357999999999999766677778888999999999999999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028329          169 FEELVLKILDTP  180 (210)
Q Consensus       169 ~~~l~~~~~~~~  180 (210)
                      |+++.+.+.++.
T Consensus       164 ~~~l~~~~~~~~  175 (186)
T 2bme_A          164 FVQCARKILNKI  175 (186)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999987643

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=2e-32  Score=200.90  Aligned_cols=168  Identities=48%  Similarity=0.850  Sum_probs=148.7

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      ..+..+||+++|++|||||||+++|++..+...+ ++.+.++....+..++..+.+.+||+||...+...+..++..+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (203)
T 1zbd_A            4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG   83 (203)
T ss_dssp             SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence            3457899999999999999999999998876544 477778887888889999999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  168 (210)
                      +++|||++++.++..+.. |+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus        84 ii~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  161 (203)
T 1zbd_A           84 FILMYDITNEESFNAVQD-WSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQT  161 (203)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHH
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHH
Confidence            999999999999998887 777776543 457899999999999877777888889999999999999999999999999


Q ss_pred             HHHHHHHHHcC
Q 028329          169 FEELVLKILDT  179 (210)
Q Consensus       169 ~~~l~~~~~~~  179 (210)
                      |++|.+.+.++
T Consensus       162 ~~~l~~~i~~~  172 (203)
T 1zbd_A          162 FERLVDVICEK  172 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.4e-33  Score=205.65  Aligned_cols=171  Identities=29%  Similarity=0.433  Sum_probs=140.7

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      +....+||+++|++|||||||+++|+++.+...+. +.+..+ ...+.+++..+.+.+||+||.+.+...+..+++.+|+
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   98 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG   98 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence            33568999999999999999999999998876554 555554 5556667778899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  168 (210)
                      +++|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus        99 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  177 (201)
T 3oes_A           99 YVLVYSVTSLHSFQVIES-LYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI  177 (201)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence            999999999999999987 7777766555668999999999999877888888899999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCc
Q 028329          169 FEELVLKILDTPSL  182 (210)
Q Consensus       169 ~~~l~~~~~~~~~~  182 (210)
                      |++|.+.+.+....
T Consensus       178 ~~~l~~~i~~~~~~  191 (201)
T 3oes_A          178 FTKVIQEIARVENS  191 (201)
T ss_dssp             HHHHHHHHHHC---
T ss_pred             HHHHHHHHHhhhhh
Confidence            99999999876543

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.9e-33  Score=202.62  Aligned_cols=171  Identities=37%  Similarity=0.668  Sum_probs=146.6

Q ss_pred             cccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccC
Q 028329            7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG   85 (210)
Q Consensus         7 ~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (210)
                      +.+..+..+||+++|++|||||||+++|++..+.. ..++.+.++....+.+++....+.+||+||+..+...+..++..
T Consensus        16 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   95 (192)
T 2fg5_A           16 PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRG   95 (192)
T ss_dssp             -----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTT
T ss_pred             cccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhcc
Confidence            33455678999999999999999999999988754 44588888888888888889999999999999999999999999


Q ss_pred             ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCH
Q 028329           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNV  165 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  165 (210)
                      +|++++|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|+
T Consensus        96 ~d~iilV~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi  173 (192)
T 2fg5_A           96 SAAAVIVYDITKQDSFYTLKK-WVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINI  173 (192)
T ss_dssp             CSEEEEEEETTCTHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSH
T ss_pred             CCEEEEEEeCCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCH
Confidence            999999999999999999977 877776643 457899999999999766677788889999999999999999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 028329          166 QQCFEELVLKILDT  179 (210)
Q Consensus       166 ~~~~~~l~~~~~~~  179 (210)
                      +++|++|.+.+.+.
T Consensus       174 ~~l~~~l~~~i~~~  187 (192)
T 2fg5_A          174 EELFQGISRQIPPL  187 (192)
T ss_dssp             HHHHHHHHHTCC--
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999877543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.5e-32  Score=200.06  Aligned_cols=169  Identities=41%  Similarity=0.732  Sum_probs=148.2

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      ++.+..++|+|+|++|||||||+++|++..+...+. +.+.++....+.+++..+.+.+||+||...+...+..++..+|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   99 (193)
T 2oil_A           20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV   99 (193)
T ss_dssp             CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence            344678999999999999999999999988875554 7777887788888899999999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  167 (210)
                      ++++|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus       100 ~vi~v~D~~~~~s~~~~~~-~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  177 (193)
T 2oil_A          100 GALLVFDLTKHQTYAVVER-WLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVEL  177 (193)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999998887 777776532 45789999999999977666777888889989999999999999999999


Q ss_pred             HHHHHHHHHHcC
Q 028329          168 CFEELVLKILDT  179 (210)
Q Consensus       168 ~~~~l~~~~~~~  179 (210)
                      +|++|.+.+.++
T Consensus       178 l~~~l~~~i~~~  189 (193)
T 2oil_A          178 AFETVLKEIFAK  189 (193)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988653

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=4e-33  Score=203.10  Aligned_cols=172  Identities=49%  Similarity=0.859  Sum_probs=142.4

Q ss_pred             ccccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhccc
Q 028329            6 ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR   84 (210)
Q Consensus         6 ~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~   84 (210)
                      ....+.+..++|+++|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..+++
T Consensus        18 ~~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~   97 (192)
T 2il1_A           18 GSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYR   97 (192)
T ss_dssp             ----CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHH
T ss_pred             CCCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhc
Confidence            33455678899999999999999999999988876543 47777888888888998999999999999999999999999


Q ss_pred             CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCcEEEEccCCCC
Q 028329           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRV  163 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~  163 (210)
                      .+|++++|||+++..+++.+.. |+..+... ...++|++||+||+|+...+.+..+++..++... +++++++||+++.
T Consensus        98 ~~d~iilV~D~~~~~s~~~~~~-~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~  175 (192)
T 2il1_A           98 SAKGIILVYDITKKETFDDLPK-WMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNF  175 (192)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTB
T ss_pred             CCCEEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence            9999999999999999999877 87777654 3457999999999999776777777888888774 7889999999999


Q ss_pred             CHHHHHHHHHHHHHcC
Q 028329          164 NVQQCFEELVLKILDT  179 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~  179 (210)
                      |++++|++|.+.+.++
T Consensus       176 gi~~l~~~l~~~i~~~  191 (192)
T 2il1_A          176 NVDEIFLKLVDDILKK  191 (192)
T ss_dssp             SHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999988653

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=6.4e-33  Score=205.41  Aligned_cols=172  Identities=24%  Similarity=0.471  Sum_probs=141.7

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      ......+||+++|++|||||||+++|+++.+...+. +.+.++ ...+.+++..+.+.+||++|++.+...+..+++++|
T Consensus        22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  100 (214)
T 3q3j_B           22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD  100 (214)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence            344567999999999999999999999998876654 666555 455677888899999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-cE
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LF  154 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~  154 (210)
                      ++|+|||+++++++..+...|+..+...  ..++|++||+||+|+...            +.+..+++..++...++ ++
T Consensus       101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  178 (214)
T 3q3j_B          101 AVLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIY  178 (214)
T ss_dssp             EEEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEE
Confidence            9999999999999999545588888775  357999999999999653            56788889999999999 89


Q ss_pred             EEEccCCCCC-HHHHHHHHHHHHHcCCCcc
Q 028329          155 IECSAKTRVN-VQQCFEELVLKILDTPSLL  183 (210)
Q Consensus       155 ~~~sa~~~~~-i~~~~~~l~~~~~~~~~~~  183 (210)
                      ++|||+++.| ++++|+++.+.+.+.....
T Consensus       179 ~e~SA~~g~g~v~~lf~~l~~~~~~~~~~~  208 (214)
T 3q3j_B          179 LEGSAFTSEKSIHSIFRTASMLCLNKPSPL  208 (214)
T ss_dssp             EECCTTTCHHHHHHHHHHHHHHHHC-----
T ss_pred             EEeccCCCcccHHHHHHHHHHHHhccCcCC
Confidence            9999999998 9999999999998766543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=6.9e-33  Score=201.23  Aligned_cols=168  Identities=37%  Similarity=0.638  Sum_probs=143.5

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccc-cchhhcccCcc
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-TLTSSYYRGAQ   87 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d   87 (210)
                      .....+||+++|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||.+.+. ..+..+++.+|
T Consensus        16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d   95 (189)
T 1z06_A           16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH   95 (189)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence            3356799999999999999999999988876544 477777777888889989999999999999888 78888999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCC---CC
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR---VN  164 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~---~~  164 (210)
                      ++++|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++   .|
T Consensus        96 ~iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~  174 (189)
T 1z06_A           96 AVVFVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDH  174 (189)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSC
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccC
Confidence            9999999999999999988 8887777665678999999999999777777788888999999999999999999   99


Q ss_pred             HHHHHHHHHHHHHc
Q 028329          165 VQQCFEELVLKILD  178 (210)
Q Consensus       165 i~~~~~~l~~~~~~  178 (210)
                      ++++|.+|.+.+.+
T Consensus       175 i~~l~~~l~~~i~~  188 (189)
T 1z06_A          175 VEAIFMTLAHKLKS  188 (189)
T ss_dssp             HHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999887743

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=9.1e-33  Score=196.44  Aligned_cols=164  Identities=33%  Similarity=0.587  Sum_probs=144.7

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      +..+||+++|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..++..+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999988876544 47777777778888888999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      +|||++++.++..+.. |+..+....  .+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|+
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  159 (168)
T 1z2a_A           83 LVFSTTDRESFEAISS-WREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFK  159 (168)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence            9999999999999888 777776544  5789999999999976666777888899999999999999999999999999


Q ss_pred             HHHHHHHc
Q 028329          171 ELVLKILD  178 (210)
Q Consensus       171 ~l~~~~~~  178 (210)
                      +|.+.+.+
T Consensus       160 ~l~~~~~~  167 (168)
T 1z2a_A          160 YLAEKHLQ  167 (168)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhh
Confidence            99998865

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=1e-32  Score=196.05  Aligned_cols=163  Identities=40%  Similarity=0.637  Sum_probs=140.8

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ..+||+++|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||+..+...+..++..+|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            35899999999999999999999988765554 555444 4556778888999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCcEEEEccCCCCCHHHHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~  170 (210)
                      |||++++.++..+.. |...+.......++|+++|+||+|+...+.+..+++..++... +.+++++||++|.|++++|+
T Consensus        81 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  159 (167)
T 1c1y_A           81 VYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence            999999999999888 7776666555678999999999999777777788888888887 78999999999999999999


Q ss_pred             HHHHHHH
Q 028329          171 ELVLKIL  177 (210)
Q Consensus       171 ~l~~~~~  177 (210)
                      +|.+.+.
T Consensus       160 ~l~~~i~  166 (167)
T 1c1y_A          160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998874

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=1.2e-32  Score=198.20  Aligned_cols=169  Identities=33%  Similarity=0.507  Sum_probs=145.7

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      +....++|+++|++|||||||+++|++..+...+. +.+..+. ..+.+++..+.+.+||+||+..+...+..++..+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   83 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   83 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence            44567999999999999999999999988766555 5555544 557788888999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  168 (210)
                      +++|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus        84 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  162 (181)
T 2fn4_A           84 FLLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA  162 (181)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence            999999999999999987 6666644445667999999999999777777788888898899999999999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028329          169 FEELVLKILDTP  180 (210)
Q Consensus       169 ~~~l~~~~~~~~  180 (210)
                      |++|.+.+.+..
T Consensus       163 ~~~l~~~~~~~~  174 (181)
T 2fn4_A          163 FEQLVRAVRKYQ  174 (181)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999987654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=2.3e-32  Score=198.80  Aligned_cols=170  Identities=35%  Similarity=0.697  Sum_probs=147.1

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeE-EEEEEECCe---------EEEEEEEeCCCcccccc
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFK-VKYVDVGGK---------KLKLAIWDTAGQERFRT   77 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~---------~~~~~l~D~~g~~~~~~   77 (210)
                      .+.+..++|+++|++|||||||+++|+++.+...+ ++.+.++. ...+..++.         .+.+.+||+||+..+..
T Consensus         6 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   85 (195)
T 3bc1_A            6 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS   85 (195)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH
T ss_pred             cccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH
Confidence            45678899999999999999999999988875443 46676666 555666665         78999999999999999


Q ss_pred             chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEE
Q 028329           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIEC  157 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (210)
                      .+..+++.+|++++|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++
T Consensus        86 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  164 (195)
T 3bc1_A           86 LTTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFET  164 (195)
T ss_dssp             HHHHTTTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEEC
T ss_pred             HHHHHHcCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEE
Confidence            99999999999999999999999999887 88877766555689999999999997766777788889999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcC
Q 028329          158 SAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       158 sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      ||+++.|++++|++|.+.+.++
T Consensus       165 Sa~~~~~v~~l~~~l~~~~~~~  186 (195)
T 3bc1_A          165 SAANGTNISHAIEMLLDLIMKR  186 (195)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999998654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=5.4e-33  Score=203.71  Aligned_cols=168  Identities=46%  Similarity=0.773  Sum_probs=139.9

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      +.+..+||+++|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|+
T Consensus        21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  100 (200)
T 2o52_A           21 WSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG  100 (200)
T ss_dssp             -CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCE
Confidence            3467899999999999999999999988876544 466777777778888989999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  168 (210)
                      +++|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus       101 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  178 (200)
T 2o52_A          101 ALLVYDITSRETYNSLAA-WLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEA  178 (200)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHH
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999887 777776533 367999999999999776777778888999999999999999999999999


Q ss_pred             HHHHHHHHHcC
Q 028329          169 FEELVLKILDT  179 (210)
Q Consensus       169 ~~~l~~~~~~~  179 (210)
                      |++|.+.+.++
T Consensus       179 ~~~l~~~i~~~  189 (200)
T 2o52_A          179 FLKCARTILNK  189 (200)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-32  Score=195.78  Aligned_cols=163  Identities=45%  Similarity=0.723  Sum_probs=142.8

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ..++|+++|++|||||||+++|.++.+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            4689999999999999999999988876544 577888877888889999999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC---ceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE---RVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  168 (210)
                      |+|++++.++..+.. |+..+.... ..++|+++|+||+|+...   +.+..+++..++...+++++++||+++.|++++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (170)
T 1ek0_A           82 VYDVTKPQSFIKARH-WVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV  159 (170)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred             EEecCChHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999888 777776543 457999999999999654   566777888888889999999999999999999


Q ss_pred             HHHHHHHHH
Q 028329          169 FEELVLKIL  177 (210)
Q Consensus       169 ~~~l~~~~~  177 (210)
                      |++|.+.+.
T Consensus       160 ~~~l~~~i~  168 (170)
T 1ek0_A          160 FLGIGEKIP  168 (170)
T ss_dssp             HHHHHTTSC
T ss_pred             HHHHHHHHh
Confidence            999987653

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=8e-33  Score=200.03  Aligned_cols=169  Identities=35%  Similarity=0.530  Sum_probs=144.4

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      ......+||+++|++|||||||+++|++..+...+. +.+.. ....+.+++..+.+.+||+||+..+...+..++..+|
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (187)
T 2a9k_A           13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE   91 (187)
T ss_dssp             ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceE-EEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence            334567999999999999999999999888766555 44433 3455677888899999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  167 (210)
                      ++++|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus        92 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  170 (187)
T 2a9k_A           92 GFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDK  170 (187)
T ss_dssp             EEEEEEETTCHHHHHHHHH-HHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence            9999999999999999988 777777666666899999999999977667778888999999999999999999999999


Q ss_pred             HHHHHHHHHHcC
Q 028329          168 CFEELVLKILDT  179 (210)
Q Consensus       168 ~~~~l~~~~~~~  179 (210)
                      +|++|.+.+.++
T Consensus       171 l~~~l~~~i~~~  182 (187)
T 2a9k_A          171 VFFDLMREIRAR  182 (187)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988654

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=3e-32  Score=194.10  Aligned_cols=164  Identities=37%  Similarity=0.674  Sum_probs=145.4

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      .+.++|+++|++|||||||+++|.+..+... .++.+.++....+.+.+....+.+||+||.+.+...+..++..+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            4679999999999999999999999887544 458888888888888999999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      +|||++++.++..+.. |+..+... .....|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|+
T Consensus        84 ~v~d~~~~~s~~~~~~-~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  161 (170)
T 1z0j_A           84 IVYDITKEETFSTLKN-WVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFI  161 (170)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            9999999999999877 87777663 346789999999999977677777888888889999999999999999999999


Q ss_pred             HHHHHHH
Q 028329          171 ELVLKIL  177 (210)
Q Consensus       171 ~l~~~~~  177 (210)
                      +|.+.+.
T Consensus       162 ~i~~~i~  168 (170)
T 1z0j_A          162 EISRRIP  168 (170)
T ss_dssp             HHHHHCC
T ss_pred             HHHHHHh
Confidence            9998764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4e-32  Score=197.92  Aligned_cols=167  Identities=30%  Similarity=0.571  Sum_probs=142.7

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      .+....++|+++|++|||||||+++|+++.+...+. +.+..+ ...+.+++..+.+.+||+||+..+...+..+++.+|
T Consensus        13 ~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   91 (194)
T 2atx_A           13 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTD   91 (194)
T ss_dssp             CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCC
Confidence            344678999999999999999999999988765544 554443 445677888899999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-cE
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LF  154 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~  154 (210)
                      ++++|||+++++++..+...|+..+...  ..++|+++|+||+|+...            +.+..+++..++...++ ++
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  169 (194)
T 2atx_A           92 VFLICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY  169 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEE
Confidence            9999999999999999985588888764  347899999999999653            35677888899999998 89


Q ss_pred             EEEccCCCCCHHHHHHHHHHHHHc
Q 028329          155 IECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       155 ~~~sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      +++||+++.|++++|++|.+.++.
T Consensus       170 ~~~Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          170 VECSALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999998864

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.3e-34  Score=206.49  Aligned_cols=169  Identities=50%  Similarity=0.841  Sum_probs=149.5

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      +.+..+||+|+|++|||||||+++|++..+...+. +.+.++....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus        19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   98 (191)
T 3dz8_A           19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG   98 (191)
T ss_dssp             EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred             ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence            34567999999999999999999999888765443 66777777888888888999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  168 (210)
                      +++|||++++.+++.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus        99 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  176 (191)
T 3dz8_A           99 FILMYDITNEESFNAVQD-WATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQA  176 (191)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            999999999999999988 888887643 457999999999999877788888899999999999999999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028329          169 FEELVLKILDTP  180 (210)
Q Consensus       169 ~~~l~~~~~~~~  180 (210)
                      |++|.+.+.++.
T Consensus       177 ~~~l~~~i~~~~  188 (191)
T 3dz8_A          177 FERLVDAICDKM  188 (191)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhc
Confidence            999999987643

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=199.84  Aligned_cols=164  Identities=30%  Similarity=0.451  Sum_probs=138.0

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...+||+++|++|||||||+++|+++.+...+. +.+..+ ...+.+++..+.+.+||++|++.+... ..+++.+|+++
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i   96 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL   96 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence            567999999999999999999999988765544 666554 445677888999999999999888775 56889999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEcc-CCCCCHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYST--NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA-KTRVNVQQ  167 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa-~~~~~i~~  167 (210)
                      +|||++++++++.+.. |+..+.....  ..++|+++|+||+|+...+.+..+++..++...+++++++|| +++.|+++
T Consensus        97 lv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~  175 (187)
T 3c5c_A           97 VVYSVDSRQSFDSSSS-YLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH  175 (187)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence            9999999999999987 7777766432  257899999999999777778888899999999999999999 89999999


Q ss_pred             HHHHHHHHHHc
Q 028329          168 CFEELVLKILD  178 (210)
Q Consensus       168 ~~~~l~~~~~~  178 (210)
                      +|++|.+.+.+
T Consensus       176 lf~~l~~~i~~  186 (187)
T 3c5c_A          176 VFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99999998864

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=1.2e-32  Score=195.50  Aligned_cols=165  Identities=35%  Similarity=0.560  Sum_probs=141.9

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      ..++|+++|++|||||||+++|.++.+...+.....+.....+.+++....+.+||+||+..+...+..++..+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            35899999999999999999999888766555333344466678888899999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  172 (210)
                      ||++++.+++.+.. |...+.......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|++|
T Consensus        82 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  160 (167)
T 1kao_A           82 YSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             EeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence            99999999999888 66666555555689999999999997777777888888999999999999999999999999999


Q ss_pred             HHHHHc
Q 028329          173 VLKILD  178 (210)
Q Consensus       173 ~~~~~~  178 (210)
                      .+.+.+
T Consensus       161 ~~~~~~  166 (167)
T 1kao_A          161 VRQMNY  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            988754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=8.1e-32  Score=193.28  Aligned_cols=167  Identities=40%  Similarity=0.700  Sum_probs=142.8

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ....++|+++|++|||||||+++|++..+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            456799999999999999999999988875443 4777777778888899899999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCCceecHHHHHHHHH-HhCCcEEEEccCCCCCH
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYST---NQDCIKLLVGNKVDKESERVVTKKEGINFAR-EYGCLFIECSAKTRVNV  165 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i  165 (210)
                      ++|||++++.++..+.. |...+.....   ..++|+++|+||+|+. .+.+..+++..++. ..+++++++||+++.|+
T Consensus        84 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  161 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV  161 (177)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            99999999999999877 7777765433   2678999999999996 45566777888887 55788999999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 028329          166 QQCFEELVLKILDT  179 (210)
Q Consensus       166 ~~~~~~l~~~~~~~  179 (210)
                      +++|+++.+.+.+.
T Consensus       162 ~~l~~~l~~~~~~~  175 (177)
T 1wms_A          162 AAAFEEAVRRVLAT  175 (177)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=2.6e-32  Score=194.42  Aligned_cols=164  Identities=54%  Similarity=0.854  Sum_probs=139.4

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ..++|+++|++|||||||+++|++..+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            4689999999999999999999988875443 466767777778888888999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  171 (210)
                      |||++++.++..+.. |+..+.... ..+.|+++|+||+|+ ..+....+++..++...+++++++||+++.|++++|.+
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  158 (170)
T 1g16_A           82 VYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT  158 (170)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            999999999998877 777776543 357899999999999 44556677788888899999999999999999999999


Q ss_pred             HHHHHHcC
Q 028329          172 LVLKILDT  179 (210)
Q Consensus       172 l~~~~~~~  179 (210)
                      |.+.+.++
T Consensus       159 l~~~~~~~  166 (170)
T 1g16_A          159 LAKLIQEK  166 (170)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99998765

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=1e-32  Score=201.98  Aligned_cols=167  Identities=37%  Similarity=0.663  Sum_probs=136.6

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      .....++|+++|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..++..+|+
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  103 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG  103 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence            3456799999999999999999999998875443 477778878888889999999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC------CCceecHHHHHHHHHHhCCcEEEEccCCC
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE------SERVVTKKEGINFAREYGCLFIECSAKTR  162 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  162 (210)
                      +++|||++++.++..+.. |+..+.... ..++|++||+||+|+.      ..+.+..+++..++...+++++++||+++
T Consensus       104 iilv~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g  181 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNIRE-WVDMIEDAA-HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDG  181 (199)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTC
T ss_pred             EEEEEECCChHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCC
Confidence            999999999999999887 887776542 3478999999999985      44567778888999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHc
Q 028329          163 VNVQQCFEELVLKILD  178 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~~  178 (210)
                      .|++++|.+|.+.+.+
T Consensus       182 ~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          182 SNIVEAVLHLAREVKK  197 (199)
T ss_dssp             TTHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999998864

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=1.2e-32  Score=197.73  Aligned_cols=169  Identities=33%  Similarity=0.550  Sum_probs=143.2

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECC-eEEEEEEEeCCCccccccchhhcccCccE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGG-KKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      ....++|+++|++|||||||+++|+++.+...+ ++.+.++....+.+++ ..+.+.+||+||++.+...+..+++.+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            346799999999999999999999988875433 3666667777777776 67899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhcc-CCCCc-EEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYST-NQDCI-KLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  166 (210)
                      +++|||++++.+++.+.. |+..+..... ..+.| +++|+||+|+...+.+..+++..++...+++++++||+++.|++
T Consensus        83 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  161 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLED-WYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVF  161 (178)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Confidence            999999999999998876 7777765432 12344 89999999997766777788889999999999999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 028329          167 QCFEELVLKILDTP  180 (210)
Q Consensus       167 ~~~~~l~~~~~~~~  180 (210)
                      ++|++|.+.+.+..
T Consensus       162 ~l~~~l~~~~~~~~  175 (178)
T 2hxs_A          162 LCFQKVAAEILGIK  175 (178)
T ss_dssp             HHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999987654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2e-32  Score=199.96  Aligned_cols=166  Identities=31%  Similarity=0.479  Sum_probs=143.0

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...+||+++|++|||||||+++|+++.+...+. +.+..+ ...+.+++..+.+.+||+||... ...+..++..+|+++
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            457999999999999999999999988766554 544433 45567888899999999999887 777888899999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCC-CHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV-NVQQCF  169 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~-~i~~~~  169 (210)
                      +|||++++++++.+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++. |++++|
T Consensus       104 lv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~  182 (196)
T 2atv_A          104 LVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF  182 (196)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence            9999999999999987 77777765556789999999999997767778888899999999999999999999 999999


Q ss_pred             HHHHHHHHcCC
Q 028329          170 EELVLKILDTP  180 (210)
Q Consensus       170 ~~l~~~~~~~~  180 (210)
                      ++|.+.+.+++
T Consensus       183 ~~l~~~i~~~~  193 (196)
T 2atv_A          183 YELCREVRRRR  193 (196)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhc
Confidence            99999987643

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=3.4e-32  Score=195.37  Aligned_cols=166  Identities=39%  Similarity=0.648  Sum_probs=144.3

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ....++|+++|++|||||||+++|++..+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..++..+|++
T Consensus        11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   90 (179)
T 2y8e_A           11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA   90 (179)
T ss_dssp             -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            346699999999999999999999988876554 4777777778888899999999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  169 (210)
                      ++|||++++.++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus        91 i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  168 (179)
T 2y8e_A           91 VVVYDITNTNSFHQTSK-WIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF  168 (179)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999887 777666533 3578999999999997777777888888899999999999999999999999


Q ss_pred             HHHHHHHHc
Q 028329          170 EELVLKILD  178 (210)
Q Consensus       170 ~~l~~~~~~  178 (210)
                      ++|.+.+.+
T Consensus       169 ~~l~~~~~~  177 (179)
T 2y8e_A          169 RRVAAALPG  177 (179)
T ss_dssp             HHHHHTCC-
T ss_pred             HHHHHHHhh
Confidence            999887643

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=2.3e-31  Score=193.22  Aligned_cols=167  Identities=34%  Similarity=0.518  Sum_probs=132.6

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ....++|+++|++|||||||+++|+++.+...+. +.+ +.....+..++..+.+.+||+||...+...+..++..+|++
T Consensus        18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   96 (190)
T 3con_A           18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF   96 (190)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred             ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccc-eEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence            3467999999999999999999999888765554 443 33345677788889999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  169 (210)
                      ++|||+++..++..+.. |+..+.......++|+++|+||+|+.. +....+++..++...+++++++||+++.|++++|
T Consensus        97 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  174 (190)
T 3con_A           97 LCVFAINNSKSFADINL-YREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF  174 (190)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999998877 877777666556799999999999865 4566778888999999999999999999999999


Q ss_pred             HHHHHHHHcCC
Q 028329          170 EELVLKILDTP  180 (210)
Q Consensus       170 ~~l~~~~~~~~  180 (210)
                      ++|.+.+.+.+
T Consensus       175 ~~l~~~~~~~~  185 (190)
T 3con_A          175 YTLVREIRQYR  185 (190)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHH
Confidence            99999887543

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=6.1e-32  Score=197.99  Aligned_cols=168  Identities=28%  Similarity=0.468  Sum_probs=135.5

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      .....++|+++|++|||||||+++|+++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..++.++|+
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI   94 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence            34567999999999999999999999888765444 544333 4556778888999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-cEE
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYGC-LFI  155 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~  155 (210)
                      +++|||++++.++..+...|+..+....  .++|+++|+||+|+..            .+.+..+++..++...++ +++
T Consensus        95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  172 (201)
T 2q3h_A           95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYI  172 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence            9999999999999999755888877643  4799999999999964            245677788888888887 899


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHcCC
Q 028329          156 ECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       156 ~~sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      ++||+++.|++++|++|.+.+.+..
T Consensus       173 ~~Sa~~g~gi~~l~~~l~~~~~~~~  197 (201)
T 2q3h_A          173 ECSALTQKNLKEVFDAAIVAGIQYS  197 (201)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCHHHHHHHHHHHHhccc
Confidence            9999999999999999999887543

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=6.2e-32  Score=200.05  Aligned_cols=166  Identities=32%  Similarity=0.576  Sum_probs=123.0

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...+||+++|++|||||||+++|+++.+...+. +.+ +.....+.+++..+.+.+||+||++.+...+..++..+|+++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVF-ERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCC-EEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccc-eeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            457999999999999999999999888765544 443 334555778888999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhCC-cEEEE
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVTKKEGINFAREYGC-LFIEC  157 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~  157 (210)
                      +|||++++.++..+...|...+....  .++|+++|+||+|+....            .+..+++..++...++ +++++
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  188 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC  188 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence            99999999999999755888887643  578999999999996543            5666778888888897 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcCC
Q 028329          158 SAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       158 sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      ||+++.|++++|++|.+.+.+.+
T Consensus       189 SA~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          189 SARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHC-
T ss_pred             cCCCCCCHHHHHHHHHHHHHHhh
Confidence            99999999999999999998664

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=1.3e-31  Score=193.53  Aligned_cols=166  Identities=30%  Similarity=0.523  Sum_probs=141.2

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...++|+++|++|||||||+++|+++.+...+. +.+.. ....+.+++..+.+.+||+||++.+...+..++..+|+++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCE-EEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccce-eEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            357999999999999999999999888765554 44433 3455678889999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-cEEEE
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIEC  157 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  157 (210)
                      +|||++++.++..+...|...+....  .+.|+++|+||+|+...            +.+..+++..++...++ +++++
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  159 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  159 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEe
Confidence            99999999999999855888877643  37899999999998553            45667778888888887 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcCC
Q 028329          158 SAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       158 sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      ||++|.|++++|+++.+.+.+..
T Consensus       160 Sa~~g~gi~~l~~~l~~~~~~~~  182 (186)
T 1mh1_A          160 SALTQRGLKTVFDEAIRAVLCPP  182 (186)
T ss_dssp             CTTTCTTHHHHHHHHHHHHSCCC
T ss_pred             cCCCccCHHHHHHHHHHHHhccc
Confidence            99999999999999999987654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=2.8e-32  Score=202.14  Aligned_cols=169  Identities=37%  Similarity=0.698  Sum_probs=144.0

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCe----------EEEEEEEeCCCccccccch
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGK----------KLKLAIWDTAGQERFRTLT   79 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~l~D~~g~~~~~~~~   79 (210)
                      .++.+||+|+|++|||||||+++|++..+...+. +.+.++....+.+++.          .+.+.+||+||+..+...+
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~  101 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT  101 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence            4678999999999999999999999887754333 5565666666666655          7899999999999999999


Q ss_pred             hhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEcc
Q 028329           80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  159 (210)
                      ..++..+|++++|||+++..++..+.. |+..+.......++|++||+||+|+...+.+..+++..++...+++++++||
T Consensus       102 ~~~~~~~d~iilV~D~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  180 (217)
T 2f7s_A          102 TAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA  180 (217)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHH-HHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEEC
Confidence            999999999999999999999998887 7777665443467999999999999776677788889999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCC
Q 028329          160 KTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      +++.|++++|++|.+.+.++.
T Consensus       181 ~~g~gi~~l~~~l~~~i~~~~  201 (217)
T 2f7s_A          181 ATGQNVEKAVETLLDLIMKRM  201 (217)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999987643

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=1.2e-31  Score=192.65  Aligned_cols=162  Identities=23%  Similarity=0.331  Sum_probs=134.9

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...+||+++|++|||||||+++|+++.+..+.++.+.. ....+.+++..+.+.+||++|++.     ..+++++|++++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il   78 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF   78 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence            45799999999999999999999999887755566544 356677888899999999999875     456778999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCC--CCceecHHHHHHHHHHh-CCcEEEEccCCCCCHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYST--NQDCIKLLVGNKVDKE--SERVVTKKEGINFAREY-GCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~  166 (210)
                      |||+++++++..+.. |+..+.....  ..++|+++|+||+|+.  ..+.+..+++..++... +++++++||+++.|++
T Consensus        79 v~D~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  157 (178)
T 2iwr_A           79 VFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD  157 (178)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred             EEECcCHHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence            999999999999988 6666554332  2578999999999993  45567778888888876 6899999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 028329          167 QCFEELVLKILDTP  180 (210)
Q Consensus       167 ~~~~~l~~~~~~~~  180 (210)
                      ++|+++.+.+.+..
T Consensus       158 ~lf~~l~~~~~~~~  171 (178)
T 2iwr_A          158 RVFQEVAQKVVTLR  171 (178)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887643

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=7.5e-32  Score=195.02  Aligned_cols=165  Identities=27%  Similarity=0.537  Sum_probs=139.5

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ....+||+++|++|||||||+++|.++.+...+. +.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            3567999999999999999999999988865543 555544 34567788889999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhC-CcEEE
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYG-CLFIE  156 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~  156 (210)
                      ++|||++++.++..+...|...+....  .+.|+++|+||+|+...            +.+..+++..++...+ +++++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  160 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE  160 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE
Confidence            999999999999998555888877643  57899999999999642            4567788889998887 68999


Q ss_pred             EccC-CCCCHHHHHHHHHHHHHc
Q 028329          157 CSAK-TRVNVQQCFEELVLKILD  178 (210)
Q Consensus       157 ~sa~-~~~~i~~~~~~l~~~~~~  178 (210)
                      +||+ ++.|++++|+++.+.+++
T Consensus       161 ~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          161 CSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eeecCCCcCHHHHHHHHHHHHhc
Confidence            9999 689999999999998875

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=3.6e-31  Score=187.52  Aligned_cols=162  Identities=34%  Similarity=0.571  Sum_probs=139.5

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .++|+++|++|||||||+++|.+..+...+. +.+ +.....+..++..+.+.+||+||+..+...+..++..+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccc-eEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            5899999999999999999999888765554 443 33355567788889999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  172 (210)
                      ||+++..++..+.. |...+.......++|+++|+||+|+.. +....+++..++...+++++++||+++.|++++|+++
T Consensus        82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (166)
T 2ce2_X           82 FAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            99999999999877 777777665556799999999999865 4456677888888899999999999999999999999


Q ss_pred             HHHHHc
Q 028329          173 VLKILD  178 (210)
Q Consensus       173 ~~~~~~  178 (210)
                      .+.+.+
T Consensus       160 ~~~~~~  165 (166)
T 2ce2_X          160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998864

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-31  Score=197.95  Aligned_cols=168  Identities=53%  Similarity=0.854  Sum_probs=142.4

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      .+....++|+++|++|||||||+++|++..+...+ ++.+.++....+.+++..+.+.+||+||+..+...+..++..+|
T Consensus        15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   94 (213)
T 3cph_A           15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM   94 (213)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence            34456799999999999999999999988875443 47777777777888998899999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  167 (210)
                      ++++|||++++.++..+.. |+..+.... ..++|+++|+||+|+ ..+.+..+++..++...+++++++||+++.|+++
T Consensus        95 ~ii~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  171 (213)
T 3cph_A           95 GIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNE  171 (213)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHHT-TTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHH
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999998887 777776543 347899999999999 4455667778888888999999999999999999


Q ss_pred             HHHHHHHHHHcC
Q 028329          168 CFEELVLKILDT  179 (210)
Q Consensus       168 ~~~~l~~~~~~~  179 (210)
                      +|++|.+.+.+.
T Consensus       172 l~~~l~~~~~~~  183 (213)
T 3cph_A          172 IFFTLAKLIQEK  183 (213)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=4.4e-31  Score=193.64  Aligned_cols=164  Identities=32%  Similarity=0.586  Sum_probs=140.7

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...+||+++|++|||||||+++|.++.+...+. +.+.++. ..+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            467999999999999999999999988765554 5554443 34677888899999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-cEEEE
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIEC  157 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  157 (210)
                      +|||++++.++..+...|...+....  .++|+++|+||+|+...            +.+..+++..++...+. +++++
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  179 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC  179 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence            99999999999999655888887643  47899999999999655            34667788888888888 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHc
Q 028329          158 SAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       158 sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      ||+++.|++++|++|.+.+++
T Consensus       180 SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          180 SAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             eCCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999998764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=2.8e-31  Score=194.51  Aligned_cols=163  Identities=36%  Similarity=0.627  Sum_probs=139.2

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeE-----------------------------
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKK-----------------------------   61 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------------------------   61 (210)
                      +..++|+++|++|||||||+++|++..+...+. +.+.++....+.+++..                             
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            457999999999999999999999988765444 67767777667766655                             


Q ss_pred             --------EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329           62 --------LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        62 --------~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~  133 (210)
                              ..+.+||+||+..+...+..+++.+|++++|||++++.++..+.. |+..+....   +.|+++|+||+| .
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~-~~~~i~~~~---~~piilv~NK~D-~  159 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKT-WVNQLKISS---NYIIILVANKID-K  159 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHH-HHHHHHHHS---CCEEEEEEECTT-C
T ss_pred             cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHH-HHHHHHhhC---CCcEEEEEECCC-c
Confidence                    899999999999999999999999999999999999999998887 777776543   399999999999 5


Q ss_pred             CCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329          134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      ..+.+..+++..++...+++++++||+++.|++++|++|.+.+.++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          160 NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             C-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            5566777888999999999999999999999999999999988653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-31  Score=197.28  Aligned_cols=165  Identities=27%  Similarity=0.535  Sum_probs=139.5

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ....+||+++|++|||||||+++|+++.+...+. +.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+|++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  103 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV  103 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence            3567999999999999999999999988865544 555554 44567788889999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhC-CcEEE
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYG-CLFIE  156 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~  156 (210)
                      ++|||++++.++..+...|...+....  .++|+++|+||+|+..            .+.+..+++..++...+ +++++
T Consensus       104 ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  181 (205)
T 1gwn_A          104 LICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE  181 (205)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEE
Confidence            999999999999998555888887643  5799999999999964            24567788889998887 68999


Q ss_pred             EccC-CCCCHHHHHHHHHHHHHc
Q 028329          157 CSAK-TRVNVQQCFEELVLKILD  178 (210)
Q Consensus       157 ~sa~-~~~~i~~~~~~l~~~~~~  178 (210)
                      +||+ ++.|++++|+++.+.+++
T Consensus       182 ~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          182 CSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             CCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             eeeccCCcCHHHHHHHHHHHHhh
Confidence            9999 689999999999998875

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=1e-31  Score=199.27  Aligned_cols=177  Identities=30%  Similarity=0.452  Sum_probs=144.8

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCcc
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      .....+||+++|++|||||||+++|+++.+...+ ++.+.+.....+... +..+.+.+||+||+..+...+..++..+|
T Consensus         7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (218)
T 4djt_A            7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS   86 (218)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred             cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence            4456799999999999999999999988876544 366666665555443 44489999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  167 (210)
                      ++++|||+++..++..+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus        87 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  164 (218)
T 4djt_A           87 GAILFFDVTSRITCQNLAR-WVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGL  164 (218)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTH
T ss_pred             EEEEEEeCCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Confidence            9999999999999999987 877776643 34689999999999987777888888888888899999999999999999


Q ss_pred             HHHHHHHHHHcCCCccccccc
Q 028329          168 CFEELVLKILDTPSLLAEGSK  188 (210)
Q Consensus       168 ~~~~l~~~~~~~~~~~~~~~~  188 (210)
                      +|++|.+.+.+..........
T Consensus       165 l~~~l~~~~~~~~~~~~~~~~  185 (218)
T 4djt_A          165 PFLHLARIFTGRPDLIFVSNV  185 (218)
T ss_dssp             HHHHHHHHHHCCTTCCBCSCC
T ss_pred             HHHHHHHHHhccccccccccc
Confidence            999999999988877654333

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=9.3e-32  Score=193.60  Aligned_cols=168  Identities=36%  Similarity=0.637  Sum_probs=129.3

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCccE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      ....++|+++|++|||||||+++|++..+...+ ++.+.++....+.++ +....+.+||+||+..+...+..+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            456799999999999999999999998876544 366677777777766 567899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCC-ceecHHHHHHHHH-HhCCcEEEEccCCCC
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYST---NQDCIKLLVGNKVDKESE-RVVTKKEGINFAR-EYGCLFIECSAKTRV  163 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~piivv~nK~D~~~~-~~~~~~~~~~~~~-~~~~~~~~~sa~~~~  163 (210)
                      +++|||++++.+++.+.. |+..+.....   ..++|+++|+||+|+... +.+..+++..++. ..+.+++++||+++.
T Consensus        85 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI  163 (182)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred             EEEEEECCChHHHHHHHH-HHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence            999999999999999887 7776655432   267899999999999533 4456777788877 456789999999999


Q ss_pred             CHHHHHHHHHHHHHcC
Q 028329          164 NVQQCFEELVLKILDT  179 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~  179 (210)
                      |++++|++|.+.+.++
T Consensus       164 gi~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          164 NVDTAFEEIARSALQQ  179 (182)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999988754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.8e-31  Score=190.34  Aligned_cols=164  Identities=29%  Similarity=0.433  Sum_probs=135.8

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ..++|+++|++|||||||+++|+++.+...+. +.+.++ ...+..++..+.+.+||+||+..+...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            36899999999999999999999888754443 444443 3445678888999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhc-cCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYS-TNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      |||++++.+++.+.. |+..+.... ...++|+++|+||+|+...+.+...+...++...+++++++||+++.|++++|+
T Consensus        81 v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  159 (172)
T 2erx_A           81 VYSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ  159 (172)
T ss_dssp             EEETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEECcCHHHHHHHHH-HHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHH
Confidence            999999999998887 555554432 235789999999999977667777788888888999999999999999999999


Q ss_pred             HHHHHHHc
Q 028329          171 ELVLKILD  178 (210)
Q Consensus       171 ~l~~~~~~  178 (210)
                      +|.+.+.+
T Consensus       160 ~l~~~~~~  167 (172)
T 2erx_A          160 ELLNLEKR  167 (172)
T ss_dssp             HHHHTCCS
T ss_pred             HHHHHHhh
Confidence            99987643

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.98  E-value=3.5e-31  Score=192.90  Aligned_cols=168  Identities=26%  Similarity=0.363  Sum_probs=134.7

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCC--CCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc-cccchhhcccCccE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDN--FEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER-FRTLTSSYYRGAQG   88 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~   88 (210)
                      ...+||+++|++|||||||+++|++..  +...+++.+.++....+.+++..+.+.+||++|... +...+..+++.+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            356999999999999999999999643  334444566666667778899999999999999766 45566677888999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  168 (210)
                      +++|||+++.++|+.+.. |...+.......++|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++
T Consensus        84 ~i~v~dv~~~~s~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           84 YLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            999999999999999987 6666655433457899999999999766667777778888888899999999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028329          169 FEELVLKILDTP  180 (210)
Q Consensus       169 ~~~l~~~~~~~~  180 (210)
                      |+++.+.+....
T Consensus       163 f~~l~~~~~~~~  174 (192)
T 2cjw_A          163 FEGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999999885443

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=7.6e-31  Score=193.21  Aligned_cols=166  Identities=32%  Similarity=0.555  Sum_probs=138.0

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...+||+++|++|||||||+++|+++.+...+. +.+..+. ..+..++..+.+.+||+||+..+...+..++..+|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            467999999999999999999999988866554 4444443 34677888899999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-cEEEE
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIEC  157 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  157 (210)
                      +|||++++.++..+...|...+...  ..++|+++|+||+|+...            +.+..+++..++...++ +++++
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  179 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC  179 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence            9999999999999965588887764  357899999999999654            34666778888888888 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcCC
Q 028329          158 SAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       158 sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      ||+++.|++++|++|.+.+.+..
T Consensus       180 SA~~g~gi~el~~~l~~~i~~~~  202 (207)
T 2fv8_A          180 SAKTKEGVREVFETATRAALQKR  202 (207)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHSCC
T ss_pred             eCCCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999987654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.98  E-value=2.5e-31  Score=195.41  Aligned_cols=163  Identities=28%  Similarity=0.514  Sum_probs=136.9

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...+||+++|++|||||||+++|+.+.+...+...........+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  107 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  107 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            45799999999999999999999988886655533334445567778889999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce------------ecHHHHHHHHHHhCC-cEEEEc
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV------------VTKKEGINFAREYGC-LFIECS  158 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~------------~~~~~~~~~~~~~~~-~~~~~s  158 (210)
                      |||++++.+++.+...|...+....  .++|+++|+||+|+.....            +..+++..++...++ +++++|
T Consensus       108 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  185 (204)
T 4gzl_A          108 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence            9999999999999855888887754  6799999999999965433            667788888888886 599999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 028329          159 AKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       159 a~~~~~i~~~~~~l~~~~  176 (210)
                      |++|.|++++|+++.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTTCTTHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998764

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.98  E-value=8.4e-32  Score=197.98  Aligned_cols=168  Identities=24%  Similarity=0.358  Sum_probs=110.8

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcC--CCCCCC-CCceeeeEEEEEEECCe--EEEEEEEeCCCccccccchhhcccCc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSD--NFEELS-PTIGVDFKVKYVDVGGK--KLKLAIWDTAGQERFRTLTSSYYRGA   86 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~--~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (210)
                      ...++|+++|++|||||||+++|++.  .+...+ ++.+.++....+.+++.  .+.+.+||+||+..+...+..++..+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            56799999999999999999999988  665443 36666677777777777  89999999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCCC-CceecHHHHHHHHHHhCCcEEEEccCC-C
Q 028329           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYST--NQDCIKLLVGNKVDKES-ERVVTKKEGINFAREYGCLFIECSAKT-R  162 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~-~  162 (210)
                      |++++|||++++.++..+.. |+..+.....  ..++|+++|+||+|+.. .+.+..+++..++...+++++++||++ +
T Consensus        98 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  176 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKA-WFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPG  176 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHH-HHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC----
T ss_pred             cEEEEEEECCCHHHHHHHHH-HHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCC
Confidence            99999999999999999987 8888876543  25799999999999977 677778889999999999999999999 9


Q ss_pred             CCHHHHHHHHHHHHHcCC
Q 028329          163 VNVQQCFEELVLKILDTP  180 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~~~~  180 (210)
                      .|++++|++|.+.+.+..
T Consensus       177 ~gi~~l~~~i~~~~~~~~  194 (208)
T 2yc2_C          177 KDADAPFLSIATTFYRNY  194 (208)
T ss_dssp             ---CHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHH
Confidence            999999999999886543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=3.8e-31  Score=188.68  Aligned_cols=162  Identities=22%  Similarity=0.318  Sum_probs=126.9

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...++|+++|++|||||||+++|+++.+....++.+...  ..+.++  ...+.+||+||+..+...+..+++.+|++++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   80 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   80 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            346999999999999999999999988876666666443  334444  5779999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHH-----HHHhCCcEEEEccCCCCCHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINF-----AREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~sa~~~~~i~  166 (210)
                      |||++++.++..... |+..+.......++|+++|+||+|+.....  ..+....     +...+++++++||+++.|++
T Consensus        81 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (171)
T 1upt_A           81 VVDSCDRDRIGISKS-ELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLD  157 (171)
T ss_dssp             EEETTCCTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence            999999999999887 444443323336799999999999965432  1222221     22335679999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 028329          167 QCFEELVLKILDTP  180 (210)
Q Consensus       167 ~~~~~l~~~~~~~~  180 (210)
                      ++|+++.+.+.+++
T Consensus       158 ~l~~~l~~~i~~~q  171 (171)
T 1upt_A          158 EAMEWLVETLKSRQ  171 (171)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhhcC
Confidence            99999999987653

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.97  E-value=5.6e-32  Score=194.94  Aligned_cols=164  Identities=32%  Similarity=0.607  Sum_probs=126.5

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...+||+++|++|||||||+++|.++.+...+. +.+..+. ..+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            456999999999999999999999888755443 4443332 22445666788899999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce----------ecHHHHHHHHHHhCC-cEEEEcc
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV----------VTKKEGINFAREYGC-LFIECSA  159 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~sa  159 (210)
                      +|||++++.+++.+...|...+....  .++|+++|+||+|+...+.          +..+++..++...++ +++++||
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  162 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS  162 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence            99999999999999855888887653  4799999999999865544          366778888888886 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHHc
Q 028329          160 KTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~  178 (210)
                      +++.|++++|+++.+.+++
T Consensus       163 ~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          163 KSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             TTCTTHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999998754

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.97  E-value=1.5e-31  Score=198.85  Aligned_cols=173  Identities=32%  Similarity=0.556  Sum_probs=147.6

Q ss_pred             cccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccC
Q 028329            7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG   85 (210)
Q Consensus         7 ~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (210)
                      ........+||+++|++|||||||+++|+.+.+.. ..++.+.++....+.+++..+.+.+||+||+..+...+..++++
T Consensus         8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   87 (221)
T 3gj0_A            8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ   87 (221)
T ss_dssp             STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred             cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence            34455678999999999999999999977666544 34588888888888899999999999999999999999999999


Q ss_pred             ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCH
Q 028329           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNV  165 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  165 (210)
                      +|++++|||++++.++..+.. |+..+....  .++|+++|+||+|+.......  +...++...+++++++||+++.|+
T Consensus        88 ~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi  162 (221)
T 3gj0_A           88 AQCAIIMFDVTSRVTYKNVPN-WHRDLVRVC--ENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNF  162 (221)
T ss_dssp             CCEEEEEEETTCHHHHHTHHH-HHHHHHHHS--TTCCEEEEEECTTSSSCSSCG--GGCCHHHHHTCEEEECBGGGTBTT
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECCccccccccH--HHHHHHHHcCCEEEEEeCCCCCCH
Confidence            999999999999999999987 887777643  478999999999996544322  456677788999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCccc
Q 028329          166 QQCFEELVLKILDTPSLLA  184 (210)
Q Consensus       166 ~~~~~~l~~~~~~~~~~~~  184 (210)
                      +++|++|.+.+.+......
T Consensus       163 ~~l~~~l~~~l~~~~~~~~  181 (221)
T 3gj0_A          163 EKPFLWLARKLIGDPNLEF  181 (221)
T ss_dssp             THHHHHHHHHHHTCTTCCE
T ss_pred             HHHHHHHHHHHHhCccccc
Confidence            9999999999988876543

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.97  E-value=3.7e-31  Score=193.31  Aligned_cols=172  Identities=13%  Similarity=0.225  Sum_probs=124.6

Q ss_pred             cccccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCC--CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhc
Q 028329            5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL--SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSY   82 (210)
Q Consensus         5 ~~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~   82 (210)
                      ..+..+....++|+|+|++|||||||+++|+++.+...  .++.+.....  +  ++..+.+.+||+||++.+...+..+
T Consensus         8 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~Dt~G~~~~~~~~~~~   83 (199)
T 4bas_A            8 HHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET--F--EKGRVAFTVFDMGGAKKFRGLWETY   83 (199)
T ss_dssp             --------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE--E--EETTEEEEEEEECCSGGGGGGGGGG
T ss_pred             cccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHH
Confidence            34445667889999999999999999999999988763  4466644432  2  3456789999999999999999999


Q ss_pred             ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhcc------CCCCcEEEEEeCCCCCCCcee---cHHHHHH-HHHHhCC
Q 028329           83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST------NQDCIKLLVGNKVDKESERVV---TKKEGIN-FAREYGC  152 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~------~~~~piivv~nK~D~~~~~~~---~~~~~~~-~~~~~~~  152 (210)
                      ++.+|++|+|||+++++++..+..++...+.....      ..++|++||+||+|+......   ....... ++...++
T Consensus        84 ~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  163 (199)
T 4bas_A           84 YDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPF  163 (199)
T ss_dssp             CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCE
T ss_pred             HhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCee
Confidence            99999999999999999999998844444332111      137899999999999755321   1111111 1134567


Q ss_pred             cEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028329          153 LFIECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       153 ~~~~~sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      +++++||+++.|++++|++|.+.+.+..
T Consensus       164 ~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          164 VIFASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             EEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             EEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence            8999999999999999999999987653

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.97  E-value=4.5e-33  Score=203.87  Aligned_cols=167  Identities=54%  Similarity=0.916  Sum_probs=136.3

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      .+..+||+++|++|||||||+++|++..+...+. +.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++
T Consensus        30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~  109 (199)
T 3l0i_B           30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI  109 (199)
T ss_dssp             CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence            4578999999999999999999999888765443 667777778888899999999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  169 (210)
                      ++|||++++.+++.+.. |+..+... ...++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus       110 i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~  187 (199)
T 3l0i_B          110 IVVYDVTDQESFNNVKQ-WLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF  187 (199)
T ss_dssp             EECC-CCCSHHHHHHHH-HHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHh-ccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            99999999999999988 88777653 23479999999999998777777677788888899999999999999999999


Q ss_pred             HHHHHHHHcC
Q 028329          170 EELVLKILDT  179 (210)
Q Consensus       170 ~~l~~~~~~~  179 (210)
                      ++|.+.+.++
T Consensus       188 ~~l~~~l~~~  197 (199)
T 3l0i_B          188 MTMAAEIKKR  197 (199)
T ss_dssp             HHHTTTTTTT
T ss_pred             HHHHHHHHHh
Confidence            9998877543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.97  E-value=2e-31  Score=194.37  Aligned_cols=167  Identities=21%  Similarity=0.215  Sum_probs=132.7

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-----------CCCceeeeEEEEE-EECCeEEEEEEEeCCCccccc
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-----------SPTIGVDFKVKYV-DVGGKKLKLAIWDTAGQERFR   76 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~l~D~~g~~~~~   76 (210)
                      ...+..+||+++|++|||||||++.+.+......           .++.+.++....+ .+++..+.+.+||+||++.+.
T Consensus         9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A            9 ANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             hccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            3456789999999999999999987765433221           1234444433333 556778999999999999999


Q ss_pred             cchhhcccCccEEEEEEeCC------CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh
Q 028329           77 TLTSSYYRGAQGIIMVYDVT------RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY  150 (210)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~  150 (210)
                      ..+..+++++|++++|||++      +.+++..+.. |+..+.  ....++|+++|+||+|+...  +..+++..++...
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~-~l~~~~--~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~  163 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-NLAEYG--LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPE  163 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHH-HHHHTT--CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTT
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHH-HHHhhc--cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhc
Confidence            99999999999999999999      4456666655 665553  23467999999999998654  6777888899889


Q ss_pred             CC-cEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028329          151 GC-LFIECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       151 ~~-~~~~~sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      ++ +++++||+++.|++++|++|.+.+.++.
T Consensus       164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~  194 (198)
T 3t1o_A          164 GKFPVLEAVATEGKGVFETLKEVSRLVLARV  194 (198)
T ss_dssp             CCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence            99 9999999999999999999999987654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=1.8e-31  Score=189.17  Aligned_cols=157  Identities=22%  Similarity=0.384  Sum_probs=121.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|++|||||||+++|+++.+....++.+..  ...+..  ....+.+||+||+..+...+..++.++|++++|||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   76 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC--EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCcee--EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999999988887665665533  223333  45789999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEEccCCCCCHHHHH
Q 028329           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~~~  169 (210)
                      +++++++..+.. |+..+.......+.|+++|+||+|+....  ..++.....     ...+++++++||+++.|++++|
T Consensus        77 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           77 SNDRERVNEARE-ELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             TTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             CCCHHHHHHHHH-HHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            999999999887 55555433344679999999999996542  222222211     1134569999999999999999


Q ss_pred             HHHHHHHHc
Q 028329          170 EELVLKILD  178 (210)
Q Consensus       170 ~~l~~~~~~  178 (210)
                      ++|.+.+.+
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999988754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=3.8e-30  Score=187.11  Aligned_cols=157  Identities=22%  Similarity=0.307  Sum_probs=125.4

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...++|+++|++|||||||+++|.++.+..+.++.+.+  ...+.+++  ..+.+||+||+..++..+..+++.+|++++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            35689999999999999999999998887666666654  34455565  789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH------------hCCcEEEEcc
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE------------YGCLFIECSA  159 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~sa  159 (210)
                      |||+++++++..+.. |+..+.......++|+++|+||+|+..  ....+++...+..            .+++++++||
T Consensus        97 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           97 LVDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEECCChHHHHHHHH-HHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            999999999999988 555554433446799999999999975  3445555554432            3457999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 028329          160 KTRVNVQQCFEELVLK  175 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~  175 (210)
                      +++.|++++|++|.+.
T Consensus       174 ~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTBSHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHhh
Confidence            9999999999998753

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=1.6e-30  Score=190.21  Aligned_cols=157  Identities=18%  Similarity=0.277  Sum_probs=119.7

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...++|+++|++|||||||+++|.++.+....++.+.+.  ..+.+++  ..+.+||+||++.++..+..+++.+|++++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            356899999999999999999999888766556666543  3445555  789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-----------------hCCcE
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-----------------YGCLF  154 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~  154 (210)
                      |||+++++++..+.. |+..+.......++|+++|+||+|+..  .+..+++..++..                 .++++
T Consensus        99 v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           99 LVDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEECCCHHHHHHHHH-HHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            999999999999988 555554433346799999999999975  4556666665542                 23569


Q ss_pred             EEEccCCCCCHHHHHHHHHHH
Q 028329          155 IECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       155 ~~~sa~~~~~i~~~~~~l~~~  175 (210)
                      ++|||++|.|++++|++|.+.
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999999764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=1.6e-29  Score=182.85  Aligned_cols=161  Identities=23%  Similarity=0.361  Sum_probs=126.3

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...++|+++|++|||||||+++|+++......++.+.+.  ..+.++  ...+.+||+||+..+...+..+++++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNI--KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   91 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            467999999999999999999999888444445666443  334444  4789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCCHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~  166 (210)
                      |+|++++.++..+.. |+..+.......++|+++|+||+|+.....  .++......     ..+++++++||+++.|++
T Consensus        92 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           92 VVDSADRQRMQDCQR-ELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEECcCHHHHHHHHH-HHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            999999999999888 555444333446799999999999965432  233332221     235679999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028329          167 QCFEELVLKILDT  179 (210)
Q Consensus       167 ~~~~~l~~~~~~~  179 (210)
                      ++|+++.+.+.++
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998765

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=6.2e-31  Score=191.57  Aligned_cols=160  Identities=23%  Similarity=0.365  Sum_probs=118.4

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...++|+++|++|||||||+++|+++.+....++.+.  ....+..  ..+.+.+||+||.+.+...+..++.++|++++
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~--~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil  102 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF--NVETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIF  102 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTE--EEEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCce--eEEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            4679999999999999999999998887654444442  2233333  34789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEEccCCCCCHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~  166 (210)
                      |||+++++++..+.. |+..+.......++|+++|+||+|+....  ..+++....     ...+++++++||+++.|++
T Consensus       103 v~D~~~~~s~~~~~~-~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          103 VVDSNDRERVQESAD-ELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence            999999999999887 55554433334579999999999996542  222222211     1124569999999999999


Q ss_pred             HHHHHHHHHHHc
Q 028329          167 QCFEELVLKILD  178 (210)
Q Consensus       167 ~~~~~l~~~~~~  178 (210)
                      ++|++|.+.+.+
T Consensus       180 ~l~~~l~~~i~~  191 (192)
T 2b6h_A          180 DGLDWLSHELSK  191 (192)
T ss_dssp             HHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhc
Confidence            999999988754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=2.5e-30  Score=187.69  Aligned_cols=161  Identities=22%  Similarity=0.329  Sum_probs=123.7

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...++|+++|++|||||||+++|+++.+... .++.+.++..  +.  ...+.+.+||+||+..+...+..++..+|+++
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--IT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence            4679999999999999999999998887643 3466655543  22  24578999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCCH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNV  165 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i  165 (210)
                      +|||+++.+++..+.. |+..+.......++|+++|+||+|+....  ..++......     ..+++++++||+++.|+
T Consensus        96 ~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv  172 (188)
T 1zd9_A           96 YMVDAADQEKIEASKN-ELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNI  172 (188)
T ss_dssp             EEEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence            9999999999999988 54444332334679999999999996542  2222222111     23456899999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 028329          166 QQCFEELVLKILDT  179 (210)
Q Consensus       166 ~~~~~~l~~~~~~~  179 (210)
                      +++|++|.+.+.++
T Consensus       173 ~~l~~~l~~~~~~~  186 (188)
T 1zd9_A          173 DITLQWLIQHSKSR  186 (188)
T ss_dssp             HHHHHHHHHTCC--
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999877543

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=7.5e-31  Score=189.38  Aligned_cols=161  Identities=25%  Similarity=0.339  Sum_probs=122.9

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...++|+++|++|||||||+++|.+..+....++.+.+  ...+.++  .+.+.+||+||+..+...+..++..+|++++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~   89 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY   89 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            45799999999999999999999988665444555543  3334444  4679999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEEccCCCCCHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~  166 (210)
                      |||+++++++..+.. |+..+.......+.|+++|+||+|+.....  .+++....     ...+++++++||++|.|++
T Consensus        90 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           90 VIDSADRKRFEETGQ-ELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEECcCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            999999999999887 555443323346789999999999975432  22222221     1224579999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028329          167 QCFEELVLKILDT  179 (210)
Q Consensus       167 ~~~~~l~~~~~~~  179 (210)
                      ++|+++.+.+.++
T Consensus       167 ~l~~~l~~~~~~~  179 (181)
T 1fzq_A          167 DGMNWVCKNVNAK  179 (181)
T ss_dssp             HHHHHHHHTC---
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999877543

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.97  E-value=1.1e-30  Score=189.51  Aligned_cols=162  Identities=21%  Similarity=0.307  Sum_probs=126.1

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...++|+++|++|||||||+++|+.+.+....++.+...  ..+..+  ...+.+||+||++.+...+..+++.+|++++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   95 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNL--ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY   95 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCE--EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEE--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence            467999999999999999999999888766556665333  334444  4789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHH-----HHHhCCcEEEEccCCCCCHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINF-----AREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~sa~~~~~i~  166 (210)
                      |+|+++++++..... |+..+.......+.|+++|+||+|+.....  .++....     +...+++++++||+++.|++
T Consensus        96 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           96 VVDSTDRDRMGVAKH-ELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEETTCCTTHHHHHH-HHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEeCCCHHHHHHHHH-HHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            999999999999887 444443333345799999999999965432  1222221     12234579999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 028329          167 QCFEELVLKILDTP  180 (210)
Q Consensus       167 ~~~~~l~~~~~~~~  180 (210)
                      ++|+++.+.+.+++
T Consensus       173 ~l~~~l~~~i~~~~  186 (189)
T 2x77_A          173 EGMDWLVERLREQG  186 (189)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999987654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=4.8e-30  Score=185.01  Aligned_cols=160  Identities=23%  Similarity=0.335  Sum_probs=122.1

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      ......++|+++|++|||||||+++|+++.+....++.+.+..  .+.+++  ..+.+||+||++.+...+..++.++|+
T Consensus        16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (181)
T 2h17_A           16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF   91 (181)
T ss_dssp             -----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE--EEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE--EEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            3345679999999999999999999999888555556665443  334444  789999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEEccCCCC
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRV  163 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~  163 (210)
                      +++|||+++.+++..+.. |+..+.......++|+++|+||+|+...  ...+++....     ...+++++++||+++.
T Consensus        92 ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~  168 (181)
T 2h17_A           92 VIVVVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGE  168 (181)
T ss_dssp             EEEEEETTCTTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTB
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence            999999999999999988 4444433233467999999999999653  2233333332     1234579999999999


Q ss_pred             CHHHHHHHHHHH
Q 028329          164 NVQQCFEELVLK  175 (210)
Q Consensus       164 ~i~~~~~~l~~~  175 (210)
                      |++++|++|.+.
T Consensus       169 gi~~l~~~l~~~  180 (181)
T 2h17_A          169 GLCQGLEWMMSR  180 (181)
T ss_dssp             THHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999998754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.3e-29  Score=182.33  Aligned_cols=163  Identities=22%  Similarity=0.328  Sum_probs=123.6

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...++|+++|++|||||||+++|+++.+....++.+.+..  .+.+++  ..+.+||+||++.+...+..++.++|++++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   89 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   89 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCE--EEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceE--EEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            4579999999999999999999998887654456554433  334443  789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCCHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~  166 (210)
                      |+|+++++++..+.. |+..+.......+.|+++|+||+|+...  ...+++.....     ..+++++++||+++.|++
T Consensus        90 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           90 VVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEETTCTTTHHHHHH-HHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEeCCCHHHHHHHHH-HHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            999999999999988 6555554333467999999999999653  23333333332     235679999999999999


Q ss_pred             HHHHHHHHHHHcCCC
Q 028329          167 QCFEELVLKILDTPS  181 (210)
Q Consensus       167 ~~~~~l~~~~~~~~~  181 (210)
                      ++|++|.+.+.+...
T Consensus       167 ~l~~~l~~~~~~~~~  181 (187)
T 1zj6_A          167 QGLEWMMSRLKIRLE  181 (187)
T ss_dssp             HHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999998866554

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=2.4e-29  Score=182.67  Aligned_cols=161  Identities=22%  Similarity=0.283  Sum_probs=123.1

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCC-CCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDN-FEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      ....++|+++|++|||||||+++|++.. +.. ..++.+  +....+.+++  ..+.+||+||++.+...+..++.++|+
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~   93 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA   93 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence            3467999999999999999999999887 333 333555  3344445443  689999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhccC--CCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCC
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTN--QDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKT  161 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~  161 (210)
                      +++|||++++.++..+.. |+..+......  .++|+++|+||+|+...  ...+++.....     ..+++++++||++
T Consensus        94 ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  170 (190)
T 2h57_A           94 IIFVIDSSDRLRMVVAKE-ELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIK  170 (190)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCC
Confidence            999999999999999888 55544432222  57899999999999653  33444454442     2356799999999


Q ss_pred             CCCHHHHHHHHHHHHHc
Q 028329          162 RVNVQQCFEELVLKILD  178 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~~~  178 (210)
                      +.|++++|++|.+.+.+
T Consensus       171 ~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          171 GEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             TBTHHHHHHHHHHHC--
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            99999999999987743

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.96  E-value=1.6e-28  Score=179.62  Aligned_cols=166  Identities=45%  Similarity=0.772  Sum_probs=142.5

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      +..++|+++|++|||||||+++|++..+...+ ++.+.++....+.+++..+.+.+||++|+..+...+..++..+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            45799999999999999999999998876544 46677777777888999999999999999998888888899999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      +|+|+++..++..+.. |+..+... ...+.|+++++||+|+...+....+++..++...++.++++|++++.+++++|+
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~  160 (199)
T 2f9l_A           83 LVYDIAKHLTYENVER-WLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFK  160 (199)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999988877 76666543 235689999999999977666777788889999999999999999999999999


Q ss_pred             HHHHHHHcC
Q 028329          171 ELVLKILDT  179 (210)
Q Consensus       171 ~l~~~~~~~  179 (210)
                      +|.+.+.+.
T Consensus       161 ~l~~~~~~~  169 (199)
T 2f9l_A          161 NILTEIYRI  169 (199)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988754

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.96  E-value=1.7e-28  Score=192.66  Aligned_cols=165  Identities=28%  Similarity=0.513  Sum_probs=140.9

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...++|+++|++|||||||+++|+++.+...+. +.+.. ....+.+++..+.+.+||+||.+.+...+..++..+|+++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEE-EEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccce-eEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            346999999999999999999999888765555 44433 3555678889999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-cEEEE
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIEC  157 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  157 (210)
                      +|||++++.++..+...|...+....  .++|+++|+||+|+...            +.+..+++..++...++ +++++
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  309 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  309 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence            99999999999998855888887643  37999999999998543            45677888899999997 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcC
Q 028329          158 SAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       158 sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      ||+++.|++++|++|.+.+++.
T Consensus       310 Sa~~~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          310 SALTQRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC-
T ss_pred             cCCCCcCHHHHHHHHHHHHhcC
Confidence            9999999999999999988754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=4.7e-30  Score=185.08  Aligned_cols=161  Identities=23%  Similarity=0.339  Sum_probs=123.0

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...++|+++|++|||||||+++|+++.+....++.+...  ..+.+++  ..+.+||+||...+...+..++..+|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF   91 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            567999999999999999999999887755555666433  3344443  789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-----hCCcEEEEccCCCCCHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-----YGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~  166 (210)
                      |+|++++.++..+.. |+..+.......+.|+++|+||+|+...  ...+++......     .+++++++||+++.|++
T Consensus        92 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           92 VVDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEETTCTTTHHHHHH-HHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            999999999999888 5555544333567999999999999653  223333333221     23469999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028329          167 QCFEELVLKILDT  179 (210)
Q Consensus       167 ~~~~~l~~~~~~~  179 (210)
                      ++|++|.+.+.++
T Consensus       169 ~l~~~l~~~~~~~  181 (183)
T 1moz_A          169 EGLDWLIDVIKEE  181 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=9.5e-30  Score=185.79  Aligned_cols=167  Identities=21%  Similarity=0.210  Sum_probs=118.8

Q ss_pred             ccccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEE-CCeEEEEEEEeCCCccccccch---hh
Q 028329            6 ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLT---SS   81 (210)
Q Consensus         6 ~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~---~~   81 (210)
                      ....+....+||+++|++|||||||++++.+............+.......+ ++..+.+.+||++|++.+....   ..
T Consensus        12 ~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   91 (196)
T 3llu_A           12 ENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM   91 (196)
T ss_dssp             --------CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred             CCCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence            3445566789999999999999999998886433321112222222333333 3566889999999999987766   78


Q ss_pred             cccCccEEEEEEeCCCc--ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC-------CceecHHHHHHHHH----
Q 028329           82 YYRGAQGIIMVYDVTRR--DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES-------ERVVTKKEGINFAR----  148 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-------~~~~~~~~~~~~~~----  148 (210)
                      +++++|++|+|||+++.  +++..+.. |+..+..  ...++|++||+||+|+..       .+.+..++...++.    
T Consensus        92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~-~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~  168 (196)
T 3llu_A           92 IFRGTGALIYVIDAQDDYMEALTRLHI-TVSKAYK--VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE  168 (196)
T ss_dssp             HHHTCSEEEEEEETTSCCHHHHHHHHH-HHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             ccccCCEEEEEEECCCchHHHHHHHHH-HHHHHHh--cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh
Confidence            89999999999999997  45555544 4444432  245899999999999854       23445555667777    


Q ss_pred             HhCCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329          149 EYGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       149 ~~~~~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                      ..+++++++||++ .|++++|..+++.+
T Consensus       169 ~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          169 KLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             TSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             cCCcceEEEEech-hhHHHHHHHHHHHh
Confidence            6678899999999 99999999998865

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.96  E-value=5.5e-28  Score=175.79  Aligned_cols=166  Identities=46%  Similarity=0.794  Sum_probs=143.0

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      .+.+..++|+++|++|||||||+++|.+..+...+ ++.+.++....+.+++..+.+.+||++|...+...+..+++.++
T Consensus        24 ~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~  103 (191)
T 1oix_A           24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAV  103 (191)
T ss_dssp             CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCC
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCC
Confidence            34567899999999999999999999998876544 47787888888889999999999999999988888888899999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329           88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  167 (210)
                      ++++|+|.++..+++.+.. |...+... ...+.|+++++||.|+...+.....++..++...++.++++|++++.++++
T Consensus       104 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~  181 (191)
T 1oix_A          104 GALLVYDIAKHLTYENVER-WLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA  181 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999888776 66655542 235689999999999976666777788889999999999999999999999


Q ss_pred             HHHHHHHHH
Q 028329          168 CFEELVLKI  176 (210)
Q Consensus       168 ~~~~l~~~~  176 (210)
                      +|++|.+.+
T Consensus       182 l~~~l~~~i  190 (191)
T 1oix_A          182 AFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998875

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.93  E-value=1.7e-31  Score=196.17  Aligned_cols=162  Identities=29%  Similarity=0.521  Sum_probs=133.7

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...+||+++|++|||||||+++|+++.+...+. +.+. .....+.+++..+.+.+||+||+..+...+..+++++|+++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            467999999999999999999999887755444 4333 33444566777888999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhCC-cEEEE
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVTKKEGINFAREYGC-LFIEC  157 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~  157 (210)
                      +|||++++.++..+...|...+....  .++|+++|+||+|+....            .+..+++..++...++ +++++
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v  184 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
Confidence            99999999999998755877776533  378999999999996543            4555667777888887 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHH
Q 028329          158 SAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       158 sa~~~~~i~~~~~~l~~~~  176 (210)
                      ||+++.|++++|++|.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999999998765

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=6.3e-29  Score=179.70  Aligned_cols=164  Identities=21%  Similarity=0.365  Sum_probs=120.2

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcC--CCCC-CCCCceeeeEEEEEEE---CCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSD--NFEE-LSPTIGVDFKVKYVDV---GGKKLKLAIWDTAGQERFRTLTSSYYRGAQ   87 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~--~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (210)
                      .+||+++|++|||||||+++|++.  .+.. +.++.+.++....+.+   ++..+.+.+||++|.+.+...+..+++++|
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999985  3333 2346666655444433   345678999999999999988888899999


Q ss_pred             EEEEEEeCCCc-ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec---HHHHHHHHHHhCCc----EEEEcc
Q 028329           88 GIIMVYDVTRR-DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT---KKEGINFAREYGCL----FIECSA  159 (210)
Q Consensus        88 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~sa  159 (210)
                      ++++|||++++ .++..+.. |+..+...  ..+.|+++|+||+|+...+...   .+....++...+++    ++++||
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~-~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKP-WLFNIKAR--ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNA  158 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHH-HHHHHHHH--CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCT
T ss_pred             EEEEEEeCCcchhHHHHHHH-HHHHHHhh--CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEec
Confidence            99999999997 47888876 77776553  2478999999999997554332   23344555556776    999999


Q ss_pred             CCCC-CHHHHHHHHHHHHHcCC
Q 028329          160 KTRV-NVQQCFEELVLKILDTP  180 (210)
Q Consensus       160 ~~~~-~i~~~~~~l~~~~~~~~  180 (210)
                      +++. +++++++.+.+.+.+.+
T Consensus       159 ~~~~~~~~~l~~~i~~~~~~~~  180 (184)
T 2zej_A          159 TEESDALAKLRKTIINESLNFK  180 (184)
T ss_dssp             TSCCHHHHHHHHHHHHHHHCC-
T ss_pred             ccCchhHHHHHHHHHHHHhccc
Confidence            9997 99999999999886643

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.96  E-value=7.5e-28  Score=177.91  Aligned_cols=162  Identities=17%  Similarity=0.229  Sum_probs=117.9

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCe-EEEEEEEeCCCcccccc-chhhcccCccEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK-KLKLAIWDTAGQERFRT-LTSSYYRGAQGI   89 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~   89 (210)
                      ...+||+++|++|||||||+++|+++.+...+++....+..  +.+++. .+.+.+||+||+..+.. .+..+++.+|++
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   82 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV   82 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence            45699999999999999999999998887766654444433  555544 68899999999999887 788889999999


Q ss_pred             EEEEeCCCcc-cHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCCceec--HHHHHHHHH-----------------
Q 028329           90 IMVYDVTRRD-TFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESERVVT--KKEGINFAR-----------------  148 (210)
Q Consensus        90 i~v~d~~~~~-s~~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~~~~~--~~~~~~~~~-----------------  148 (210)
                      ++|||+++.. ++.....+|...+... ....++|+++|+||+|+.......  .+.......                 
T Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~  162 (214)
T 2fh5_B           83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS  162 (214)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----------
T ss_pred             EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCc
Confidence            9999999854 4666666566665442 234578999999999996543221  111111111                 


Q ss_pred             ----------------Hh--CCcEEEEccCCC------CCHHHHHHHHHHH
Q 028329          149 ----------------EY--GCLFIECSAKTR------VNVQQCFEELVLK  175 (210)
Q Consensus       149 ----------------~~--~~~~~~~sa~~~------~~i~~~~~~l~~~  175 (210)
                                      .+  +++|++|||++|      .|++++|++|.+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          163 TAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             --CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             cccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                            11  567999999999      9999999999875

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.96  E-value=9.6e-29  Score=193.83  Aligned_cols=160  Identities=21%  Similarity=0.355  Sum_probs=119.4

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      ..+||+|+|++|||||||+++|.++.+....++.+..+.  .+.  ...+.+.||||||++.+...+..+++.+|++|+|
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~--~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV  239 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV  239 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEE--EEE--ETTEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEE--EEe--cCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence            568999999999999999999998887554444443332  222  3457899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCCHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~  167 (210)
                      ||+++..++..+..+|...+.. ....++|++||+||+|+.....  .+++.....     ..+++++++||+++.|+++
T Consensus       240 ~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e  316 (329)
T 3o47_A          240 VDSNDRERVNEAREELMRMLAE-DELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYE  316 (329)
T ss_dssp             EETTCSSSHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred             EECCchHHHHHHHHHHHHHHhh-hccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence            9999999999998855555544 3345799999999999975432  222222221     1245699999999999999


Q ss_pred             HHHHHHHHHHcC
Q 028329          168 CFEELVLKILDT  179 (210)
Q Consensus       168 ~~~~l~~~~~~~  179 (210)
                      +|++|.+.+.++
T Consensus       317 l~~~l~~~l~~~  328 (329)
T 3o47_A          317 GLDWLSNQLRNQ  328 (329)
T ss_dssp             HHHHHHHHHTC-
T ss_pred             HHHHHHHHHHhc
Confidence            999999988654

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.7e-28  Score=186.10  Aligned_cols=166  Identities=23%  Similarity=0.287  Sum_probs=118.9

Q ss_pred             cccceEEEEEEEcCC---------CCcHHHHHHHHhcC---CCCCCC-CCc-eeeeEEEE--------------EEECCe
Q 028329            9 QEFDYLFKLLMIGDS---------GVGKSSLLLSFTSD---NFEELS-PTI-GVDFKVKY--------------VDVGGK   60 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~---------~~GKTtli~~l~~~---~~~~~~-~~~-~~~~~~~~--------------~~~~~~   60 (210)
                      ......+||+++|++         |||||||+++|+++   .+...+ ++. +.++....              ..+++.
T Consensus        14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   93 (255)
T 3c5h_A           14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV   93 (255)
T ss_dssp             SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred             CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence            344567999999999         99999999999984   443322 222 22221111              124567


Q ss_pred             EEEEEEEe-----------------------CCCccccccchhhccc---------------------CccEEEEEEeCC
Q 028329           61 KLKLAIWD-----------------------TAGQERFRTLTSSYYR---------------------GAQGIIMVYDVT   96 (210)
Q Consensus        61 ~~~~~l~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~   96 (210)
                      .+.+.+||                       ++|++.+...+..++.                     ++|++|+|||++
T Consensus        94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t  173 (255)
T 3c5h_A           94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS  173 (255)
T ss_dssp             --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred             EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence            78899999                       5566666666666666                     799999999999


Q ss_pred             Cc--ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-hCCcEEEEccCCCCCHHHHHHHHH
Q 028329           97 RR--DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-YGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        97 ~~--~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i~~~~~~l~  173 (210)
                      ++  .+++.+.. |+..+.......++|++||+||+|+...+.+  +++..++.. .+++++++||+++.|++++|++|.
T Consensus       174 ~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~  250 (255)
T 3c5h_A          174 RGMNRNFDDQLK-FVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLV  250 (255)
T ss_dssp             C----CHHHHHH-HHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred             CCchhhHHHHHH-HHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHH
Confidence            98  99999887 7777765433457999999999999655443  466677765 478999999999999999999999


Q ss_pred             HHHH
Q 028329          174 LKIL  177 (210)
Q Consensus       174 ~~~~  177 (210)
                      +.+.
T Consensus       251 ~~l~  254 (255)
T 3c5h_A          251 QLID  254 (255)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8774

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=8.3e-27  Score=174.08  Aligned_cols=165  Identities=18%  Similarity=0.059  Sum_probs=113.5

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCcccc---------ccchhh
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF---------RTLTSS   81 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~~~~~~   81 (210)
                      ...++|+++|++|||||||+++|++..+... .+....+.....+...  ...+.+||+||....         ...+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            4579999999999999999999998876421 1111222222222333  367999999998321         112233


Q ss_pred             cccCccEEEEEEeCCCcccHHHHH-HHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH---HHHHHHHHhC--CcEE
Q 028329           82 YYRGAQGIIMVYDVTRRDTFTNLS-DVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK---EGINFAREYG--CLFI  155 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~  155 (210)
                      ++..+|++++|||++++.++.... ..|+..+...  ..++|+++|+||+|+...+.+..+   ....++...+  ++++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS  182 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence            467889999999999988875221 1244444331  247899999999999766555443   4455666666  7899


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHcCC
Q 028329          156 ECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       156 ~~sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      ++||+++.|++++|++|.+.+.+.+
T Consensus       183 ~~SA~~g~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          183 SFSTLTGVGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.95  E-value=1.5e-26  Score=179.91  Aligned_cols=173  Identities=16%  Similarity=0.119  Sum_probs=132.8

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCe-EEEEEEEeCCCccccc----------c
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK-KLKLAIWDTAGQERFR----------T   77 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~----------~   77 (210)
                      .+....-.|+++|.+|||||||+|+|++..+....+.++++........... ...+.+|||||.....          .
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~   84 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE   84 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence            4456678999999999999999999999988766665555554443333333 5789999999985543          4


Q ss_pred             chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcEE
Q 028329           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG--CLFI  155 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~  155 (210)
                      .+...+..+|++++|+|+++..++..... |...+..    .++|+++|+||+|+.............+....+  .+++
T Consensus        85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~-~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~  159 (308)
T 3iev_A           85 IAKQSLEEADVILFMIDATEGWRPRDEEI-YQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV  159 (308)
T ss_dssp             HHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred             HHHHHhhcCCEEEEEEeCCCCCCchhHHH-HHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence            55667889999999999999888877655 6676664    468999999999997444455555666767665  6799


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHcCCCccccc
Q 028329          156 ECSAKTRVNVQQCFEELVLKILDTPSLLAEG  186 (210)
Q Consensus       156 ~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~  186 (210)
                      ++||+++.|++++|+++.+.+.+....+..+
T Consensus       160 ~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~  190 (308)
T 3iev_A          160 PISALKGANLDELVKTILKYLPEGEPLFPED  190 (308)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHSCBCCCSSCTT
T ss_pred             EEeCCCCCCHHHHHHHHHHhCccCCCCCCcc
Confidence            9999999999999999999997776655443

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.94  E-value=3.4e-26  Score=163.97  Aligned_cols=159  Identities=21%  Similarity=0.231  Sum_probs=116.6

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ....++|+++|++|||||||+++|++..+...+ ++.+.++....+.+++.  .+.+||+||+..+...+...+..+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            356789999999999999999999988775433 34444444444555654  577999999999999998999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-------C--CcEEEEccC
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-------G--CLFIECSAK  160 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~sa~  160 (210)
                      ++|+|+++........  ++..+.    ..++|+++|+||+|+....   .++........       +  ++++++||+
T Consensus        83 i~v~d~~~~~~~~~~~--~l~~~~----~~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  153 (178)
T 2lkc_A           83 ILVVAADDGVMPQTVE--AINHAK----AANVPIIVAINKMDKPEAN---PDRVMQELMEYNLVPEEWGGDTIFCKLSAK  153 (178)
T ss_dssp             EEEEETTCCCCHHHHH--HHHHHG----GGSCCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred             EEEEECCCCCcHHHHH--HHHHHH----hCCCCEEEEEECccCCcCC---HHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence            9999998854333222  122222    3468999999999996532   22222222221       2  579999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCC
Q 028329          161 TRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~~  180 (210)
                      ++.|++++|++|.+.+...+
T Consensus       154 ~~~gv~~l~~~l~~~~~~~~  173 (178)
T 2lkc_A          154 TKEGLDHLLEMILLVSEMEE  173 (178)
T ss_dssp             SSHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHhhhhhc
Confidence            99999999999999886654

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.94  E-value=1.1e-26  Score=180.58  Aligned_cols=164  Identities=23%  Similarity=0.331  Sum_probs=127.1

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCC----CCCceeeeEEEEEEECCeEEEEEEEeCCCcccc-----ccchhhcc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEEL----SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF-----RTLTSSYY   83 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~~~~~   83 (210)
                      ..+||+++|++|||||||+++|+++.....    .+|.+....  .+.+++ .+.+.+||+||+..+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            358999999999999999999998743322    224443333  333444 688999999999888     67788889


Q ss_pred             cCccEEEEEEeCCCcccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCC--Cce----ecHHHHHHHHHHhC---Cc
Q 028329           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKES--ERV----VTKKEGINFAREYG---CL  153 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~  153 (210)
                      +++|++++|||+++.++++.+.. |...+... ....++|+++|+||+|+..  .+.    ...+++..++..++   ++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~-~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~  157 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEI-FAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLI  157 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHH-HHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCE
T ss_pred             ccCCEEEEEEECCChhhHHHHHH-HHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeE
Confidence            99999999999999999998876 55544332 1245799999999999976  443    55577888888887   68


Q ss_pred             EEEEccCCCCCHHHHHHHHHHHHHcCCC
Q 028329          154 FIECSAKTRVNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       154 ~~~~sa~~~~~i~~~~~~l~~~~~~~~~  181 (210)
                      ++++||++ .++.++|..+++.+....+
T Consensus       158 ~~~tSa~~-~~i~e~~~~iv~~li~~~~  184 (307)
T 3r7w_A          158 GFPTSIWD-ESLYKAWSQIVCSLIPNMS  184 (307)
T ss_dssp             EEECCTTS-SHHHHHHHHHHHTTCSCHH
T ss_pred             EEEeeecC-ChHHHHHHHHHHHHcCCHH
Confidence            99999999 8999999998887655443

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.94  E-value=1e-26  Score=169.17  Aligned_cols=160  Identities=16%  Similarity=0.184  Sum_probs=111.5

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCC----------cccccc
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG----------QERFRT   77 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~   77 (210)
                      .+....++|+++|++|||||||+++|++..+. ...++++.+........++   .+.+||+||          ...+..
T Consensus        18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~   94 (195)
T 1svi_A           18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGR   94 (195)
T ss_dssp             SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHH
Confidence            34457899999999999999999999988743 3444666666555555544   589999999          566666


Q ss_pred             chhhcccCc---cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH--HHHHH-HHHHhC
Q 028329           78 LTSSYYRGA---QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK--KEGIN-FAREYG  151 (210)
Q Consensus        78 ~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~-~~~~~~  151 (210)
                      .+..++..+   |++++|+|+++..++....  +...+..    .+.|+++|+||+|+...+....  +++.. +....+
T Consensus        95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  168 (195)
T 1svi_A           95 MIETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPE  168 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCC
Confidence            676776666   9999999999988776643  2333332    5689999999999976544322  22222 222235


Q ss_pred             CcEEEEccCCCCCHHHHHHHHHHHHH
Q 028329          152 CLFIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       152 ~~~~~~sa~~~~~i~~~~~~l~~~~~  177 (210)
                      .+++++||+++.|++++|++|.+.+.
T Consensus       169 ~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          169 DELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             CceEEEEccCCCCHHHHHHHHHHHhc
Confidence            78999999999999999999998764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.94  E-value=1.4e-26  Score=164.46  Aligned_cols=152  Identities=17%  Similarity=0.231  Sum_probs=109.8

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhccc--
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT------LTSSYYR--   84 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~~--   84 (210)
                      .++|+++|++|||||||+++|++..+.. ..++.+.+.....+.+++  ..+.+|||||...+..      ....++.  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            4899999999999999999999876532 223323333344445554  5799999999877642      2344443  


Q ss_pred             CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCC
Q 028329           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVN  164 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  164 (210)
                      .+|++++|+|+++.++   ... |...+..    .++|+++|+||+|+...+.+.. ++..++..++++++++||++|.|
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~-~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~  151 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLY-LTLQLME----MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMG  151 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHH-HHHHHHH----TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBS
T ss_pred             CCCEEEEEecCCchhH---hHH-HHHHHHh----cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCC
Confidence            7999999999987543   333 5555443    3689999999999854333332 35677778899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028329          165 VQQCFEELVLKI  176 (210)
Q Consensus       165 i~~~~~~l~~~~  176 (210)
                      ++++|+++.+.+
T Consensus       152 v~~l~~~l~~~~  163 (165)
T 2wji_A          152 IEELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998865

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=3.7e-27  Score=170.73  Aligned_cols=159  Identities=22%  Similarity=0.268  Sum_probs=117.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC-----------ccccccchhhcc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG-----------QERFRTLTSSYY   83 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~~~~~   83 (210)
                      +||+++|++|||||||+++|++..+...+ .++.+.....+...    .+.+||+||           ++.+...+..++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   76 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGK-RPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   76 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSS-STTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCC-CCCccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence            68999999999999999999988765332 23333444444444    589999999           556666676777


Q ss_pred             cC-ccEEEEEEeCCCcccHHHHHHHHHHH--------HhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc-
Q 028329           84 RG-AQGIIMVYDVTRRDTFTNLSDVWAKE--------IDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-  153 (210)
Q Consensus        84 ~~-~d~~i~v~d~~~~~s~~~~~~~~~~~--------~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-  153 (210)
                      .. ++++++++++.+..++..+...|...        +.......++|+++|+||+|+....   .++...++..++++ 
T Consensus        77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~  153 (190)
T 2cxx_A           77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVPL  153 (190)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCCG
T ss_pred             HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhhh
Confidence            76 77777777777777887775546542        2222334579999999999997654   45667777777764 


Q ss_pred             ------EEEEccCCCCCHHHHHHHHHHHHHcCCC
Q 028329          154 ------FIECSAKTRVNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       154 ------~~~~sa~~~~~i~~~~~~l~~~~~~~~~  181 (210)
                            ++++||++|.|++++|+++.+.+.+.+.
T Consensus       154 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          154 SEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             GGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             hccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence                  7999999999999999999999876553

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.94  E-value=5e-27  Score=165.62  Aligned_cols=149  Identities=18%  Similarity=0.174  Sum_probs=106.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEEEEEECCeEEEEEEEeCCCccc-------cccchhhcccC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQER-------FRTLTSSYYRG   85 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~   85 (210)
                      +||+++|++|||||||+++|.+..+....+  ....+.....+..++.  .+.+||+||...       +...+...+..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            689999999999999999999887543333  3333344444555554  688999999876       34455667889


Q ss_pred             ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCCC
Q 028329           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVN  164 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~  164 (210)
                      +|++++|+|+++..+...  ..+...+..    .+.|+++|+||+|+....    +++..++ ..++ +++++||+++.|
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~----~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~g  148 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR----KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARG  148 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH----HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBS
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh----cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCC
Confidence            999999999998655432  213333332    468999999999996542    2233344 5677 799999999999


Q ss_pred             HHHHHHHHHHHH
Q 028329          165 VQQCFEELVLKI  176 (210)
Q Consensus       165 i~~~~~~l~~~~  176 (210)
                      ++++|+++.+.+
T Consensus       149 v~~l~~~l~~~l  160 (161)
T 2dyk_A          149 LEELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             hHHHHHHHHHhC
Confidence            999999998764

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.94  E-value=3.3e-28  Score=188.09  Aligned_cols=169  Identities=20%  Similarity=0.221  Sum_probs=125.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCC----CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc---chhhcccCccE
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEE----LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT---LTSSYYRGAQG   88 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~d~   88 (210)
                      ||+++|++|||||||++++.++.++.    ..+|.+.++..    ++ ..+.+.+|||+|++.+..   .+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999988665433    23455555542    22 347899999999999964   35788999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCC-------ceecHHHHHHHHHH----hCCcEEE
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESE-------RVVTKKEGINFARE----YGCLFIE  156 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~  156 (210)
                      +|+|||+++.  +.....+|...+... ...+++|+++++||+|+...       +.+..+++..++..    .++.|++
T Consensus        76 ~IlV~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~e  153 (331)
T 3r7w_B           76 LVYVIDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYL  153 (331)
T ss_dssp             EEEECCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEEC
T ss_pred             EEEEEECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEE
Confidence            9999999997  334444354444321 12457999999999999754       34556666666664    5788999


Q ss_pred             EccCCCCCHHHHHHHHHHHHHcCCCcccccccCccc
Q 028329          157 CSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKK  192 (210)
Q Consensus       157 ~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~  192 (210)
                      |||++ .++.+.|..+.+.+..+.+.++.....+..
T Consensus       154 TSAkd-~nV~eAFs~iv~~li~~~~~le~~L~~~~~  188 (331)
T 3r7w_B          154 TSIFD-HSIYEAFSRIVQKLIPELSFLENMLDNLIQ  188 (331)
T ss_dssp             CCSSS-SHHHHHHHHHHTTSSTTHHHHHHHHTGGGC
T ss_pred             eccCC-CcHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99998 589999999999988777776665555443

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.94  E-value=1.2e-25  Score=163.26  Aligned_cols=160  Identities=19%  Similarity=0.210  Sum_probs=116.9

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC----------ccccccch
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG----------QERFRTLT   79 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~   79 (210)
                      +....++|+++|++|||||||+++|++.......++.+.+........+.   .+.+||+||          ...+...+
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (195)
T 3pqc_A           19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLV   95 (195)
T ss_dssp             CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHH
Confidence            34566899999999999999999999988666666666666555444443   478999999          55566666


Q ss_pred             hhcccCc---cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc--eecHHHHHHHHHHhC-Cc
Q 028329           80 SSYYRGA---QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER--VVTKKEGINFAREYG-CL  153 (210)
Q Consensus        80 ~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~-~~  153 (210)
                      ..++..+   |++++|+|+++..+.....  +...+..    .++|+++|+||+|+....  ....+++..++...+ ++
T Consensus        96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  169 (195)
T 3pqc_A           96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMKS----LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYT  169 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSC
T ss_pred             HHHHhcCcCceEEEEEecCCCCCCHHHHH--HHHHHHH----cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCc
Confidence            6666554   9999999998765443331  2233332    268999999999986443  233345555555534 68


Q ss_pred             EEEEccCCCCCHHHHHHHHHHHHHc
Q 028329          154 FIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       154 ~~~~sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      ++++||+++.|++++|++|.+.+.+
T Consensus       170 ~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          170 IIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             eEEEecCCCCCHHHHHHHHHHHhhc
Confidence            9999999999999999999988754

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.93  E-value=4.5e-26  Score=172.93  Aligned_cols=157  Identities=18%  Similarity=0.148  Sum_probs=115.8

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccch------hhcc--
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLT------SSYY--   83 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~------~~~~--   83 (210)
                      ...++|+++|++|||||||+++|++..+. ....++.++......+......+.+||+||...+.+.+      ..++  
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~   81 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK   81 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence            35699999999999999999999987653 11223444444443333334789999999987776532      4444  


Q ss_pred             cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCC
Q 028329           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV  163 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  163 (210)
                      ..+|++++|+|+++.++...    |...+..    .++|+++|+||+|+...+.+.. +...++..++++++++||+++.
T Consensus        82 ~~~d~ii~V~D~t~~~~~~~----~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~  152 (258)
T 3a1s_A           82 GDADLVILVADSVNPEQSLY----LLLEILE----MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGE  152 (258)
T ss_dssp             SCCSEEEEEEETTSCHHHHH----HHHHHHT----TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCT
T ss_pred             cCCCEEEEEeCCCchhhHHH----HHHHHHh----cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCc
Confidence            58999999999998765432    3333332    3689999999999854433332 3577788889999999999999


Q ss_pred             CHHHHHHHHHHHHHc
Q 028329          164 NVQQCFEELVLKILD  178 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~  178 (210)
                      |++++|+++.+.+..
T Consensus       153 gi~el~~~i~~~~~~  167 (258)
T 3a1s_A          153 GLEELKEKIVEYAQK  167 (258)
T ss_dssp             THHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHhhc
Confidence            999999999998753

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.93  E-value=3.7e-26  Score=163.44  Aligned_cols=152  Identities=22%  Similarity=0.181  Sum_probs=109.2

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCC--CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhhcc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEEL--SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSSYY   83 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~   83 (210)
                      .++|+++|++|||||||+++|++......  ++..+.++....+.+++.  .+.+||+||...+...        ....+
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEI   81 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence            47999999999999999999998765322  233333344555666664  4789999997643211        12347


Q ss_pred             cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCC
Q 028329           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV  163 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  163 (210)
                      +.+|++++|||+++..++.. .. |+..+.... ..++|+++|+||+|+......       ++...+.+++++||+++.
T Consensus        82 ~~ad~~i~v~D~~~~~s~~~-~~-~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~~-------~~~~~~~~~~~~SA~~g~  151 (172)
T 2gj8_A           82 EQADRVLFMVDGTTTDAVDP-AE-IWPEFIARL-PAKLPITVVRNKADITGETLG-------MSEVNGHALIRLSARTGE  151 (172)
T ss_dssp             HTCSEEEEEEETTTCCCCSH-HH-HCHHHHHHS-CTTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCTTTCT
T ss_pred             HhCCEEEEEEECCCCCCHHH-HH-HHHHHHHhc-ccCCCEEEEEECccCCcchhh-------hhhccCCceEEEeCCCCC
Confidence            89999999999999888763 33 656555432 346899999999998432211       111246789999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 028329          164 NVQQCFEELVLKIL  177 (210)
Q Consensus       164 ~i~~~~~~l~~~~~  177 (210)
                      |++++|++|.+.+.
T Consensus       152 gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          152 GVDVLRNHLKQSMG  165 (172)
T ss_dssp             THHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHhh
Confidence            99999999988763

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.93  E-value=1.3e-25  Score=162.51  Aligned_cols=157  Identities=17%  Similarity=0.229  Sum_probs=115.9

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc------cchhhccc-
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR------TLTSSYYR-   84 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~-   84 (210)
                      ..++|+++|++|||||||+++|++..+. ...++.+.+.....+..++  ..+.+||+||...+.      ..+..++. 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            5699999999999999999999986542 2233333344444455544  678999999987764      23444553 


Q ss_pred             -CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCC
Q 028329           85 -GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV  163 (210)
Q Consensus        85 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  163 (210)
                       .+|++++|+|.++   ++.... |...+..    .+.|+++|+||+|+...+.+. .+...++...+++++++||+++.
T Consensus        84 ~~~~~~i~v~d~~~---~~~~~~-~~~~~~~----~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~  154 (188)
T 2wjg_A           84 EKPDLVVNIVDATA---LERNLY-LTLQLME----MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKM  154 (188)
T ss_dssp             HCCSEEEEEEEGGG---HHHHHH-HHHHHHT----TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTB
T ss_pred             cCCCEEEEEecchh---HHHHHH-HHHHHHh----cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCC
Confidence             5899999999875   444444 5555543    468999999999985433333 34567778889999999999999


Q ss_pred             CHHHHHHHHHHHHHcCC
Q 028329          164 NVQQCFEELVLKILDTP  180 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~~  180 (210)
                      |++++|+++.+.+.+..
T Consensus       155 ~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          155 GIEELKKAISIAVKDKK  171 (188)
T ss_dssp             SHHHHHHHHHHHHTTC-
T ss_pred             CHHHHHHHHHHHHHhcc
Confidence            99999999999987665

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.93  E-value=5.3e-26  Score=189.04  Aligned_cols=165  Identities=22%  Similarity=0.292  Sum_probs=124.0

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEE------E--EECCeEEEEEEEeCCCccccccchhh
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKY------V--DVGGKKLKLAIWDTAGQERFRTLTSS   81 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~------~--~~~~~~~~~~l~D~~g~~~~~~~~~~   81 (210)
                      ....+||+++|.+|||||||+++|++..+...+. +.+.++....      +  ..++....+.+||+||++.+...+..
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            4567999999999999999999999888754443 6665554331      1  12334678999999999999999999


Q ss_pred             cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCC
Q 028329           82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT  161 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  161 (210)
                      +++.+|++++|+|+++.   +.... |...+..+.  .+.|+++|+||+|+...+.+..+++...+...+++++++||++
T Consensus       118 ~l~~~d~ii~V~D~s~~---~~~~~-~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~  191 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTD---SNKHY-WLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKN  191 (535)
T ss_dssp             HHHSSEEEEEEECGGGG---GGHHH-HHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC--
T ss_pred             HccCCcEEEEEEeCCCc---hhHHH-HHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCc
Confidence            99999999999999765   34444 777777653  4689999999999987777778888888888899999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCC
Q 028329          162 RVNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~~~~~~  181 (210)
                      +.|++++|+++.+.+.+...
T Consensus       192 g~gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          192 GDGVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             ---CTTHHHHHHHHHTCTTS
T ss_pred             ccCHHHHHHHHHHHHhcccc
Confidence            99999999999999977654

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.93  E-value=6.8e-26  Score=172.92  Aligned_cols=154  Identities=19%  Similarity=0.150  Sum_probs=115.2

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc------cchhhccc--
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR------TLTSSYYR--   84 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~--   84 (210)
                      +.++|+++|++|||||||+++|++.... ....++.++......+.. ...+.+||+||...+.      .....++.  
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~-v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~   79 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ   79 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCC-CCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence            3589999999999999999999986532 223445556555555665 6679999999987765      23445554  


Q ss_pred             CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCC
Q 028329           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVN  164 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  164 (210)
                      .+|++++|+|+++.++.   .. |...+..    .++|+++|+||+|+...+.+. .+...++..++++++++||++|.|
T Consensus        80 ~~d~vi~V~D~t~~e~~---~~-~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~g  150 (272)
T 3b1v_A           80 RADSILNVVDATNLERN---LY-LTTQLIE----TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTG  150 (272)
T ss_dssp             CCSEEEEEEEGGGHHHH---HH-HHHHHHH----TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBS
T ss_pred             CCCEEEEEecCCchHhH---HH-HHHHHHh----cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCC
Confidence            69999999999886543   22 4444433    478999999999985433333 345677788899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028329          165 VQQCFEELVLKIL  177 (210)
Q Consensus       165 i~~~~~~l~~~~~  177 (210)
                      ++++|+++.+.+.
T Consensus       151 i~el~~~i~~~~~  163 (272)
T 3b1v_A          151 VDQVVKKAAHTTT  163 (272)
T ss_dssp             HHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988653

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.93  E-value=2.4e-25  Score=165.34  Aligned_cols=166  Identities=17%  Similarity=0.102  Sum_probs=114.0

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCC-CCCCCCCceeeeEEEEEEEC-CeEEEEEEEeCCCcc----------ccc
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDN-FEELSPTIGVDFKVKYVDVG-GKKLKLAIWDTAGQE----------RFR   76 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~----------~~~   76 (210)
                      .+....++|+++|.+|||||||+++|++.. .......++.+......... .....+.+|||||..          .+.
T Consensus        24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~  103 (223)
T 4dhe_A           24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE  103 (223)
T ss_dssp             SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence            334567999999999999999999999887 33444455555554445544 445679999999942          334


Q ss_pred             cchhhcccC---ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec--HHHHHHHHHH--
Q 028329           77 TLTSSYYRG---AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT--KKEGINFARE--  149 (210)
Q Consensus        77 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~--~~~~~~~~~~--  149 (210)
                      ..+..++..   +|++++|+|+++..+..  ...|...+..    .++|+++|+||+|+.......  .+........  
T Consensus       104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~--~~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~  177 (223)
T 4dhe_A          104 QLLSSYLQTRPQLCGMILMMDARRPLTEL--DRRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR  177 (223)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHH--HHHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcCcCEEEEEEeCCCCCCHH--HHHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh
Confidence            444444444   88999999999864432  2225555543    468999999999986544321  1222233333  


Q ss_pred             -----hCCcEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028329          150 -----YGCLFIECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       150 -----~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                           .+.+++++||+++.|++++|++|.+.+....
T Consensus       178 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          178 DAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             HHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             hcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence                 4567999999999999999999999886544

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.92  E-value=7.4e-25  Score=169.56  Aligned_cols=167  Identities=19%  Similarity=0.153  Sum_probs=115.7

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccchhhcc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER--------FRTLTSSYY   83 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~   83 (210)
                      .+..+|+++|++|||||||+|+|++..+....+.++++..............+.+|||||...        +.......+
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l   84 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL   84 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence            355789999999999999999999988765444333333322222223356899999999765        344556678


Q ss_pred             cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCC
Q 028329           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV  163 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  163 (210)
                      +.+|++++|+|+++..+...  .++...+...  ..++|+++|+||+|+........+.+..+  ....+++++||+++.
T Consensus        85 ~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~iSA~~g~  158 (301)
T 1wf3_A           85 ADVNAVVWVVDLRHPPTPED--ELVARALKPL--VGKVPILLVGNKLDAAKYPEEAMKAYHEL--LPEAEPRMLSALDER  158 (301)
T ss_dssp             SSCSEEEEEEETTSCCCHHH--HHHHHHHGGG--TTTSCEEEEEECGGGCSSHHHHHHHHHHT--STTSEEEECCTTCHH
T ss_pred             hcCCEEEEEEECCCCCChHH--HHHHHHHHhh--cCCCCEEEEEECcccCCchHHHHHHHHHh--cCcCcEEEEeCCCCC
Confidence            89999999999998755442  3234455542  24689999999999865433111222222  112468999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCccc
Q 028329          164 NVQQCFEELVLKILDTPSLLA  184 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~~~~~~~  184 (210)
                      |++++|+++.+.+.+....++
T Consensus       159 gv~~l~~~l~~~l~~~~~~y~  179 (301)
T 1wf3_A          159 QVAELKADLLALMPEGPFFYP  179 (301)
T ss_dssp             HHHHHHHHHHTTCCBCCCSSC
T ss_pred             CHHHHHHHHHHhcccCCCCCC
Confidence            999999999988766555443

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.91  E-value=2.6e-24  Score=175.53  Aligned_cols=156  Identities=17%  Similarity=0.076  Sum_probs=99.7

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeE--EEEEEECCeEEEEEEEeCCCccccccch--------hhc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFK--VKYVDVGGKKLKLAIWDTAGQERFRTLT--------SSY   82 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~   82 (210)
                      ..++|+++|.+|||||||+|+|++.......+.++++..  ...+.+++  ..+.+|||||...+...+        ...
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            458999999999999999999998765444443444333  34445555  579999999987655433        336


Q ss_pred             ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCC
Q 028329           83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR  162 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  162 (210)
                      +..+|++++|+|++++.++..... +...+...   .++|+++|+||+|+........   ..+......+++++||+++
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l---~~~piIvV~NK~Dl~~~~~~~~---~~l~~~~~~~~i~vSAktg  382 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTE-IRELKAAH---PAAKFLTVANKLDRAANADALI---RAIADGTGTEVIGISALNG  382 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHH-HHHHHHHC---TTSEEEEEEECTTSCTTTHHHH---HHHHHHHTSCEEECBTTTT
T ss_pred             cccCCEEEEEEECCCCcchhhhHH-HHHHHHhc---CCCCEEEEEECcCCCCccchhH---HHHHhcCCCceEEEEECCC
Confidence            789999999999999988865433 44444432   2689999999999976654422   2233322368999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 028329          163 VNVQQCFEELVLKIL  177 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~  177 (210)
                      .|++++|++|.+.+.
T Consensus       383 ~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          383 DGIDTLKQHMGDLVK  397 (476)
T ss_dssp             BSHHHHHHHHTHHHH
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999999887

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.91  E-value=8.4e-25  Score=167.28  Aligned_cols=157  Identities=18%  Similarity=0.134  Sum_probs=113.5

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhcc--c
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT------LTSSYY--R   84 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~--~   84 (210)
                      .++|+++|++|||||||+++|++..+.. ..+..+.+.....+...+  ..+.+||+||...+..      .+..++  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            5899999999999999999999876521 222333334444444454  3589999999877665      344444  6


Q ss_pred             CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCC
Q 028329           85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVN  164 (210)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  164 (210)
                      .+|++++|+|+++.+   .... |...+..   ...+|+++|+||+|+...+..... ...+...++++++++||+++.|
T Consensus        81 ~~d~vi~v~D~~~~~---~~~~-~~~~~~~---~~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~g  152 (271)
T 3k53_A           81 NADVIVDIVDSTCLM---RNLF-LTLELFE---MEVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEG  152 (271)
T ss_dssp             CCSEEEEEEEGGGHH---HHHH-HHHHHHH---TTCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBT
T ss_pred             CCcEEEEEecCCcch---hhHH-HHHHHHh---cCCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCC
Confidence            899999999998853   2333 2222322   123899999999998543333322 5677788899999999999999


Q ss_pred             HHHHHHHHHHHHHcCC
Q 028329          165 VQQCFEELVLKILDTP  180 (210)
Q Consensus       165 i~~~~~~l~~~~~~~~  180 (210)
                      ++++|+++.+.+.+..
T Consensus       153 i~~l~~~i~~~~~~~~  168 (271)
T 3k53_A          153 VEELKRMIALMAEGKV  168 (271)
T ss_dssp             HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999999886554

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.91  E-value=9.5e-25  Score=165.38  Aligned_cols=150  Identities=19%  Similarity=0.218  Sum_probs=109.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc----------chhhcc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT----------LTSSYY   83 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~~~~   83 (210)
                      .+|+++|.+|||||||+++|++.... ...+..+.+.....+..++.  .+.+||+||...+.+          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999987642 12233333344444555554  789999999876654          344555


Q ss_pred             --cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCC
Q 028329           84 --RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT  161 (210)
Q Consensus        84 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  161 (210)
                        ..+|++++|+|+++.++...+.    ..+.    ..++|+++|+||+|+...+.... ....+...++++++++||++
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~----~~l~----~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~  150 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLT----SQLF----ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHK  150 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHH----HHHT----TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGG
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHH----HHHH----HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCC
Confidence              7899999999999865544332    2232    24789999999999854332222 23456777899999999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028329          162 RVNVQQCFEELVLK  175 (210)
Q Consensus       162 ~~~i~~~~~~l~~~  175 (210)
                      |.|++++|+++.+.
T Consensus       151 g~gi~el~~~i~~~  164 (256)
T 3iby_A          151 NIGIPALQQSLLHC  164 (256)
T ss_dssp             TBSHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999999887

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.91  E-value=2.2e-25  Score=170.58  Aligned_cols=156  Identities=15%  Similarity=0.156  Sum_probs=109.9

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc----------hhhc-
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL----------TSSY-   82 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------~~~~-   82 (210)
                      .++|+++|++|||||||+|+|++..+. ....++.+.......+......+.+||+||...+...          +..+ 
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~   81 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI   81 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEE-EEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcc-cCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence            589999999999999999999987642 2223343333333333223346888999998766521          2222 


Q ss_pred             -ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCC
Q 028329           83 -YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT  161 (210)
Q Consensus        83 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  161 (210)
                       ...+|++++|+|+++.++...+    ...+..    .++|+++|+||+|+...+.... ....+...++++++++||++
T Consensus        82 ~~~~~d~ii~VvD~~~~~~~~~~----~~~l~~----~~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~~  152 (274)
T 3i8s_A           82 LSGDADLLINVVDASNLERNLYL----TLQLLE----LGIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVSTR  152 (274)
T ss_dssp             HHTCCSEEEEEEEGGGHHHHHHH----HHHHHH----HTCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCGG
T ss_pred             hhcCCCEEEEEecCCChHHHHHH----HHHHHh----cCCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcCC
Confidence             2689999999999986544333    333332    2689999999999854333222 24566778899999999999


Q ss_pred             CCCHHHHHHHHHHHHHcC
Q 028329          162 RVNVQQCFEELVLKILDT  179 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~~~~  179 (210)
                      |.|++++|+++.+.+.+.
T Consensus       153 g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          153 GRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             GHHHHHHHHHHHTCCCCC
T ss_pred             CCCHHHHHHHHHHHHhcC
Confidence            999999999998876544

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.91  E-value=1.9e-24  Score=175.49  Aligned_cols=162  Identities=19%  Similarity=0.123  Sum_probs=114.4

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCc----------cccccch
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQ----------ERFRTLT   79 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~~   79 (210)
                      +..++|+++|++|||||||+++|++.......+.++++.  ....+..++.  .+.+|||||+          +.+....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            456999999999999999999999887643333333333  3334455554  4899999997          3333222


Q ss_pred             h-hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-H----HhCCc
Q 028329           80 S-SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-R----EYGCL  153 (210)
Q Consensus        80 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-~----~~~~~  153 (210)
                      . ..++.+|++++|+|++++.++....  |...+..    .++|+++|+||+|+...+....++..... .    ..+++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~~--~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~  324 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDKR--IAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP  324 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSC
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHHH--HHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCC
Confidence            2 3677899999999999998877653  5555543    46899999999999765544333332222 2    23678


Q ss_pred             EEEEccCCCCCHHHHHHHHHHHHHcCCC
Q 028329          154 FIECSAKTRVNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       154 ~~~~sa~~~~~i~~~~~~l~~~~~~~~~  181 (210)
                      ++++||++|.|++++|+.+.+.+.+...
T Consensus       325 ~~~~SA~tg~~v~~l~~~i~~~~~~~~~  352 (436)
T 2hjg_A          325 ILFMSALTKKRIHTLMPAIIKASENHSL  352 (436)
T ss_dssp             EEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             EEEEecccCCCHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999998876543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.90  E-value=1.2e-24  Score=161.05  Aligned_cols=148  Identities=18%  Similarity=0.187  Sum_probs=103.5

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccC----c
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG----A   86 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~----~   86 (210)
                      ....++|+++|++|||||||+++|++..+.........+.     ........+.+||+||+..+...+..++..    +
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   83 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-----AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV   83 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEE-----ETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceE-----EEEeeCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence            4567999999999999999999999887654221111111     111144578999999999998888888876    8


Q ss_pred             cEEEEEEeCC-CcccHHHHHHHHHHHHhhhc---cCCCCcEEEEEeCCCCCCCceec------HHHHHHHHHHhCCcEEE
Q 028329           87 QGIIMVYDVT-RRDTFTNLSDVWAKEIDLYS---TNQDCIKLLVGNKVDKESERVVT------KKEGINFAREYGCLFIE  156 (210)
Q Consensus        87 d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~~~~  156 (210)
                      |++++|+|++ +.+++..... |+..+....   ...++|+++|+||+|+.....+.      .++...++...++.+++
T Consensus        84 ~~~i~v~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  162 (218)
T 1nrj_B           84 KGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNE  162 (218)
T ss_dssp             EEEEEEEETTSCTTCCHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CEEEEEEECCCChHHHHHHHH-HHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9999999999 8889988888 444443322   23679999999999997665443      34556666677788999


Q ss_pred             EccCCCCC
Q 028329          157 CSAKTRVN  164 (210)
Q Consensus       157 ~sa~~~~~  164 (210)
                      +|++++.+
T Consensus       163 ~Sa~~~~~  170 (218)
T 1nrj_B          163 VERKINEE  170 (218)
T ss_dssp             --------
T ss_pred             cccccccc
Confidence            99998874

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.90  E-value=4.5e-24  Score=174.27  Aligned_cols=163  Identities=19%  Similarity=0.146  Sum_probs=118.7

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceee--eEEEEEEECCeEEEEEEEeCCC----------ccccccch
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVD--FKVKYVDVGGKKLKLAIWDTAG----------QERFRTLT   79 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~   79 (210)
                      ...++|+++|.+|+|||||+++|++.......+.++++  .....+..++.  .+.+|||||          .+.+....
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence            45799999999999999999999977643333323332  22344555554  789999999          45555443


Q ss_pred             h-hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-----CCc
Q 028329           80 S-SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-----GCL  153 (210)
Q Consensus        80 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~  153 (210)
                      . .+++.+|++++|+|+++..+...  ..|...+..    .++|+++|+||+|+...+....+++...+...     .++
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP  344 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSC
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCC
Confidence            3 36788999999999998654322  225555543    46899999999999876666666666666655     578


Q ss_pred             EEEEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028329          154 FIECSAKTRVNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       154 ~~~~sa~~~~~i~~~~~~l~~~~~~~~~~  182 (210)
                      ++++||++|.|++++|+++.+.+.+....
T Consensus       345 ~~~~SA~~g~gv~~l~~~i~~~~~~~~~~  373 (456)
T 4dcu_A          345 ILFMSALTKKRIHTLMPAIIKASENHSLR  373 (456)
T ss_dssp             EEECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred             EEEEcCCCCcCHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999988665544

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.90  E-value=4.9e-23  Score=159.53  Aligned_cols=165  Identities=19%  Similarity=0.119  Sum_probs=112.8

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc---------ccccchhhcc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE---------RFRTLTSSYY   83 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~~   83 (210)
                      +..+|+++|++|||||||+++|++.......+.++++.......+......+.+|||||..         .+.......+
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l   86 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI   86 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence            4568999999999999999999988764333333333222221222234678999999986         2334456678


Q ss_pred             cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCC
Q 028329           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTR  162 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~  162 (210)
                      ..+|++++|+|+++ -  ......+...+.    ..+.|+++++||+|+........+....+...+++ .++++||+++
T Consensus        87 ~~~D~vl~Vvd~~~-~--~~~~~~i~~~l~----~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g  159 (301)
T 1ega_A           87 GDVELVIFVVEGTR-W--TPDDEMVLNKLR----EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG  159 (301)
T ss_dssp             CCEEEEEEEEETTC-C--CHHHHHHHHHHH----SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             hcCCEEEEEEeCCC-C--CHHHHHHHHHHH----hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence            89999999999977 2  222222333332    35689999999999875322233344445555565 6999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCccc
Q 028329          163 VNVQQCFEELVLKILDTPSLLA  184 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~~~~~~~~  184 (210)
                      .|++++++++...+.+....++
T Consensus       160 ~~v~~l~~~i~~~l~~~~~~~~  181 (301)
T 1ega_A          160 LNVDTIAAIVRKHLPEATHHFP  181 (301)
T ss_dssp             TTHHHHHHHHHTTCCBCCCSSC
T ss_pred             CCHHHHHHHHHHhCCcCCCCCC
Confidence            9999999999988766554443

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.89  E-value=1.2e-22  Score=160.98  Aligned_cols=161  Identities=22%  Similarity=0.193  Sum_probs=114.6

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc---------chhh
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT---------LTSS   81 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~~~   81 (210)
                      ...++|+++|.+|||||||+++|++..... ..+..........+...  ...+.+|||||......         ....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            456899999999999999999999876421 12211112222222223  35789999999744221         1123


Q ss_pred             cccCccEEEEEEeCCCcc--cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEcc
Q 028329           82 YYRGAQGIIMVYDVTRRD--TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  159 (210)
                      ....+|++++|+|+++..  +++.... |+..+....  .+.|+++|+||+|+.....+  +++..++...+++++++||
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~-~~~~i~~~~--~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA  317 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIH-LFEEVHGEF--KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISA  317 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHH-HHHHHHHHT--TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHH-HHHHHHHhc--CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeC
Confidence            445699999999999876  6666666 666665532  27899999999999754432  4455666677889999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcC
Q 028329          160 KTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~  179 (210)
                      ++|.|++++|+++.+.+...
T Consensus       318 ~~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          318 LKGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             TTTBTHHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHH
Confidence            99999999999999988554

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.89  E-value=1.1e-24  Score=175.02  Aligned_cols=160  Identities=18%  Similarity=0.152  Sum_probs=111.8

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCcee--eeEEEEEEECCeEEEEEEEeCCCccccccc-------h
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGV--DFKVKYVDVGGKKLKLAIWDTAGQERFRTL-------T   79 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~   79 (210)
                      .+....++|+++|++|+|||||+++|++..+.......++  +.....+.+.+. ..+.+|||||+..+...       +
T Consensus        29 ~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~  107 (423)
T 3qq5_A           29 PDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKA  107 (423)
T ss_dssp             ---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHH
Confidence            3455679999999999999999999998876443333333  333444555443 27899999998776544       3


Q ss_pred             hhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEcc
Q 028329           80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  159 (210)
                      ..++..+|++++|+|++..+   .. ..|...+...    ++|+++|+||+|+......  +....+...++++++++||
T Consensus       108 ~~~l~~aD~vllVvD~~~~~---~~-~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSA  177 (423)
T 3qq5_A          108 RRVFYRADCGILVTDSAPTP---YE-DDVVNLFKEM----EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSA  177 (423)
T ss_dssp             HHHHTSCSEEEEECSSSCCH---HH-HHHHHHHHHT----TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSS
T ss_pred             HHHHhcCCEEEEEEeCCChH---HH-HHHHHHHHhc----CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEEC
Confidence            44788899999999993322   22 2266666542    7899999999999765544  4455666667889999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcC
Q 028329          160 KTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~  179 (210)
                      +++.|++++|++|.+.+.+.
T Consensus       178 ktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          178 LQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             CCTTSTTTHHHHHHHHSCCC
T ss_pred             CCCCCHHHHHHHHHHhhhhh
Confidence            99999999999999998554

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.89  E-value=5.1e-23  Score=167.30  Aligned_cols=153  Identities=24%  Similarity=0.273  Sum_probs=102.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCccc---------cccchhhcc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQER---------FRTLTSSYY   83 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~   83 (210)
                      .+|+++|.||||||||+|+|++.......+.++.+.  ....+.+++.  .+.+|||||...         +...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            479999999999999999999887654444455443  3344455554  578999999653         234556678


Q ss_pred             cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHH-HHHHHHhCC-cEEEEccCC
Q 028329           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEG-INFAREYGC-LFIECSAKT  161 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~sa~~  161 (210)
                      +.+|++++|+|+++..+....  .+...++.    .++|+++|+||+|+...  . ..+. ..+ ..+++ +++++||++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~--~i~~~l~~----~~~p~ilv~NK~D~~~~--~-~~~~~~~~-~~lg~~~~~~iSA~~  149 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDE--SLADFLRK----STVDTILVANKAENLRE--F-EREVKPEL-YSLGFGEPIPVSAEH  149 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHH--HHHHHHHH----HTCCEEEEEESCCSHHH--H-HHHTHHHH-GGGSSCSCEECBTTT
T ss_pred             HhCCEEEEEEECCCCCCHHHH--HHHHHHHH----cCCCEEEEEeCCCCccc--c-HHHHHHHH-HhcCCCCEEEEeccC
Confidence            999999999999887654331  12233332    36899999999997532  1 1222 233 25676 689999999


Q ss_pred             CCCHHHHHHHHHHHHHcC
Q 028329          162 RVNVQQCFEELVLKILDT  179 (210)
Q Consensus       162 ~~~i~~~~~~l~~~~~~~  179 (210)
                      |.|++++|+++.+.+.+.
T Consensus       150 g~gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          150 NINLDTMLETIIKKLEEK  167 (439)
T ss_dssp             TBSHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHhcccc
Confidence            999999999999988754

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.89  E-value=3e-23  Score=169.41  Aligned_cols=151  Identities=20%  Similarity=0.190  Sum_probs=110.3

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEEEEEECCeEEEEEEEeCCCcc-cccc--------chhhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQE-RFRT--------LTSSY   82 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-~~~~--------~~~~~   82 (210)
                      .++|+++|.+|||||||+|+|++.......+  .++.+.....+.+++  ..+.+|||||.. .+..        .....
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            4899999999999999999999876543333  233333444455555  468999999987 5432        23456


Q ss_pred             ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCC
Q 028329           83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR  162 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  162 (210)
                      +..+|++++|+|++++.+++...  ++..+      .++|+++|+||+|+...  ...+++..++ ..+.+++++||+++
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~--il~~l------~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg  389 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK--ILERI------KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKG  389 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH--HHHHH------TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGT
T ss_pred             hhcccEEEEEecCCCCCCHHHHH--HHHHh------cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCC
Confidence            78899999999999988876542  22332      36899999999999653  3334444432 23468999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 028329          163 VNVQQCFEELVLKIL  177 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~  177 (210)
                      .|++++|++|.+.+.
T Consensus       390 ~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          390 EGLEKLEESIYRETQ  404 (482)
T ss_dssp             CCHHHHHHHHHHHTH
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999999765

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.89  E-value=2.2e-23  Score=169.33  Aligned_cols=154  Identities=18%  Similarity=0.179  Sum_probs=104.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc--------ccccchhhcccCc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE--------RFRTLTSSYYRGA   86 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~~~~~   86 (210)
                      ++|+++|.+|||||||+++|++.......++++.+..............+.+|||||..        .+...+..++..+
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a   83 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA   83 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence            68999999999999999999998877666677777766655665555679999999975        5566677788999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCCCH
Q 028329           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNV  165 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i  165 (210)
                      |++++|+|+++..+....  .+...+.    ..++|+++|+||+|+.......    ..+. .+++ +++++||++|.|+
T Consensus        84 d~il~vvD~~~~~~~~d~--~~~~~l~----~~~~pvilv~NK~D~~~~~~~~----~~~~-~lg~~~~~~iSA~~g~gv  152 (436)
T 2hjg_A           84 DVIIFMVNGREGVTAADE--EVAKILY----RTKKPVVLAVNKLDNTEMRANI----YDFY-SLGFGEPYPISGTHGLGL  152 (436)
T ss_dssp             SEEEEEEETTTCSCHHHH--HHHHHHT----TCCSCEEEEEECCCC-----CC----CSSG-GGSSCCCEECBTTTTBTH
T ss_pred             CEEEEEEeCCCCCCHHHH--HHHHHHH----HcCCCEEEEEECccCccchhhH----HHHH-HcCCCCeEEEeCcCCCCh
Confidence            999999999987765432  1344443    3578999999999986432211    1111 3455 6899999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 028329          166 QQCFEELVLKILDT  179 (210)
Q Consensus       166 ~~~~~~l~~~~~~~  179 (210)
                      .++++++.+.+.+.
T Consensus       153 ~~L~~~i~~~l~~~  166 (436)
T 2hjg_A          153 GDLLDAVAEHFKNI  166 (436)
T ss_dssp             HHHHHHHHHTGGGC
T ss_pred             HHHHHHHHHhcCcc
Confidence            99999999888643

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.88  E-value=9.6e-23  Score=159.90  Aligned_cols=161  Identities=19%  Similarity=0.219  Sum_probs=114.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc----cccchhhcc---cCc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER----FRTLTSSYY---RGA   86 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~~---~~~   86 (210)
                      .+|+|+|.+|||||||+++|++.... ..++..........+.+++ ...+.+||+||...    +..+...++   ..+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            36889999999999999999976532 2223111112222233333 24689999999533    333434443   459


Q ss_pred             cEEEEEEeCCC---cccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcEEEEccC
Q 028329           87 QGIIMVYDVTR---RDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYG--CLFIECSAK  160 (210)
Q Consensus        87 d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~  160 (210)
                      |++|+|+|+++   .++++.+.. |...+..+.. ..++|+++|+||+|+....    +....+...+.  .+++++||+
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~-~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~  312 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLT-INQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAV  312 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHH-HHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSC
T ss_pred             cEEEEEEECCcccccChHHHHHH-HHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECC
Confidence            99999999998   778888876 7777776532 2578999999999986432    23455555555  679999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCC
Q 028329          161 TRVNVQQCFEELVLKILDTPS  181 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~~~  181 (210)
                      ++.|+++++.+|.+.+.+.+.
T Consensus       313 tg~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          313 TREGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             CSSTTHHHHHHHHHHHTSCCC
T ss_pred             CCcCHHHHHHHHHHHHhhCcc
Confidence            999999999999999976554

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.88  E-value=3.4e-22  Score=150.08  Aligned_cols=166  Identities=11%  Similarity=0.147  Sum_probs=106.2

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceee--eEEEEEEECCeEEEEEEEeCCCcc-----------cc
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVD--FKVKYVDVGGKKLKLAIWDTAGQE-----------RF   75 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~-----------~~   75 (210)
                      +....++|+++|++|||||||+++|++....... +..+.+  .....+..++  ..+.+|||||..           .+
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~  102 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI  102 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence            3456799999999999999999999988764332 222232  3333344444  468999999943           33


Q ss_pred             ccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHh-hhccCCCCcEEEEEeCCCCCCCceec------HHHHHHHHH
Q 028329           76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEID-LYSTNQDCIKLLVGNKVDKESERVVT------KKEGINFAR  148 (210)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~piivv~nK~D~~~~~~~~------~~~~~~~~~  148 (210)
                      ...+...+..+|++++|+|+++......  . |+..+. .+......|+++|+||+|+.....+.      .+....+..
T Consensus       103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~--~-~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~  179 (239)
T 3lxx_A          103 IRCILLTSPGPHALLLVVPLGRYTEEEH--K-ATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD  179 (239)
T ss_dssp             HHHHHHTTTCCSEEEEEEETTCCSSHHH--H-HHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEeeCCCCCHHHH--H-HHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence            4444555678899999999986544221  1 222221 11112346899999999986544332      235677778


Q ss_pred             HhCCcEEEEccCCC-----CCHHHHHHHHHHHHHcCC
Q 028329          149 EYGCLFIECSAKTR-----VNVQQCFEELVLKILDTP  180 (210)
Q Consensus       149 ~~~~~~~~~sa~~~-----~~i~~~~~~l~~~~~~~~  180 (210)
                      ..+..++.++...+     .++.++|..+.+.+.++.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~  216 (239)
T 3lxx_A          180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENK  216 (239)
T ss_dssp             HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence            88888888877644     689999999988886653

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.88  E-value=5.7e-22  Score=159.49  Aligned_cols=166  Identities=16%  Similarity=0.092  Sum_probs=115.7

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE------------------E-EEECCeEEEEEEEeCCC
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVK------------------Y-VDVGGKKLKLAIWDTAG   71 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~------------------~-~~~~~~~~~~~l~D~~g   71 (210)
                      ....++|+++|++++|||||+++|++............+....                  . .........+.+||+||
T Consensus         5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG   84 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG   84 (403)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence            4567999999999999999999999754332111111111000                  0 00012237899999999


Q ss_pred             ccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHHH
Q 028329           72 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGINFARE  149 (210)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~  149 (210)
                      +..+...+...+..+|++++|+|+++..++..... |+..+...   ...|+++|+||+|+......  ..++...+...
T Consensus        85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~-~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~  160 (403)
T 3sjy_A           85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE-HFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG  160 (403)
T ss_dssp             CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHH-HHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHH-HHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999876666666 55555442   22589999999999654322  11222232222


Q ss_pred             h---CCcEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028329          150 Y---GCLFIECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       150 ~---~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      .   +++++++||++|.|+++++++|.+.+....
T Consensus       161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~  194 (403)
T 3sjy_A          161 TWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY  194 (403)
T ss_dssp             STTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             hCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence            2   567999999999999999999998775443

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.87  E-value=2.8e-22  Score=152.36  Aligned_cols=165  Identities=13%  Similarity=0.106  Sum_probs=104.7

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--C-ceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--T-IGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL--------   78 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------   78 (210)
                      +....++|+|+|++|||||||+++|++........  + ...+.........+  ..+.+|||||.......        
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i   95 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV   95 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence            34467999999999999999999999877433222  2 22223333334444  46899999997654322        


Q ss_pred             ---hhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhc-cCCCCcEEEEEe-CCCCCCCceecH-------HHHHHH
Q 028329           79 ---TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS-TNQDCIKLLVGN-KVDKESERVVTK-------KEGINF  146 (210)
Q Consensus        79 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piivv~n-K~D~~~~~~~~~-------~~~~~~  146 (210)
                         ....++.+|++++|+|+++....   ...+...+.... .....|.++++| |+|+.... ...       .+...+
T Consensus        96 ~~~~~~~~~~~d~il~V~d~~~~~~~---~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~  171 (260)
T 2xtp_A           96 QRCYLLSAPGPHVLLLVTQLGRYTSQ---DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKL  171 (260)
T ss_dssp             HHHHHHHTTCCSEEEEEEETTCCCHH---HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEEeCCCCCHH---HHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHH
Confidence               22356889999999999863322   221223333221 112356666666 99997432 211       223445


Q ss_pred             HHHhCCc---E--EEEccCCCCCHHHHHHHHHHHHHcCC
Q 028329          147 AREYGCL---F--IECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       147 ~~~~~~~---~--~~~sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      ....+..   +  +++||+++.|++++|++|.+.+....
T Consensus       172 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          172 VAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             HHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence            5555533   2  78999999999999999999998765

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.87  E-value=1.1e-21  Score=154.48  Aligned_cols=118  Identities=19%  Similarity=0.173  Sum_probs=96.5

Q ss_pred             EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCC----------cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028329           61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV  130 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~  130 (210)
                      .+.+.+||++|++.++..|..++++++++|+|||+++          .+++..... |+..+.......++|++|++||+
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~-~~~~i~~~~~~~~~piiLv~NK~  270 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK-LFDSICNNKWFTDTSIILFLNKK  270 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHH-HHHHHHcCccccCCcEEEEEECc
Confidence            5789999999999999999999999999999999999          466888877 55555443334679999999999


Q ss_pred             CCCCCc---------------eecHHHHHHHHH-----------HhCCcEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329          131 DKESER---------------VVTKKEGINFAR-----------EYGCLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       131 D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      |+...+               ....+++..++.           ..++.+++|||+++.||.++|+++.+.+.+.
T Consensus       271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~  345 (353)
T 1cip_A          271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  345 (353)
T ss_dssp             HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence            984322               256677777776           2456799999999999999999999988653

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.87  E-value=1.2e-21  Score=163.47  Aligned_cols=159  Identities=23%  Similarity=0.282  Sum_probs=111.4

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCC--CC---------CC---CCCceeeeEEEEEEE-----CCeEEEEEEEeCCCcc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDN--FE---------EL---SPTIGVDFKVKYVDV-----GGKKLKLAIWDTAGQE   73 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~--~~---------~~---~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~   73 (210)
                      ...+|+++|+.++|||||+++|+...  ..         ..   ....+.++......+     ++..+.+.||||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            45799999999999999999998532  11         00   012333443222222     5567899999999999


Q ss_pred             ccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-
Q 028329           74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-  152 (210)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-  152 (210)
                      .+...+...++.+|++|+|+|+++..+...... |.....     .++|+++++||+|++...  ..+....+...++. 
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~-~~~~~~-----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~  154 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLAN-CYTAME-----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGID  154 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHH-HHHHHH-----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHHH-----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCC
Confidence            999999999999999999999999887777665 555443     368999999999997543  22223445555565 


Q ss_pred             --cEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329          153 --LFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       153 --~~~~~sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                        +++++||++|.|++++++++.+.+...
T Consensus       155 ~~~vi~vSAktg~GI~~Ll~~I~~~lp~p  183 (599)
T 3cb4_D          155 ATDAVRCSAKTGVGVQDVLERLVRDIPPP  183 (599)
T ss_dssp             CTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred             cceEEEeecccCCCchhHHHHHhhcCCCc
Confidence              389999999999999999999887544

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.87  E-value=8.6e-23  Score=166.05  Aligned_cols=154  Identities=18%  Similarity=0.179  Sum_probs=102.5

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEEEEEECCeEEEEEEEeCCCccccccch--------hhc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLT--------SSY   82 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~   82 (210)
                      ..++|+++|++|||||||+|+|++........  ..+.++....+.+++  ..+.+|||||...+...+        ...
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            45899999999999999999999876543333  333333333445555  457999999976544332        235


Q ss_pred             ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCC
Q 028329           83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR  162 (210)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  162 (210)
                      +..+|++++|+|++++.+.... . |+..+.      ..|+++|+||+|+.......  ....+.  .+.+++++||+++
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~~-~-i~~~l~------~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg  368 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGDQ-E-IYEQVK------HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQK  368 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHHH-H-HHHHHT------TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTT
T ss_pred             hhcCCEEEEEeccCCCCCHHHH-H-HHHhcc------CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCC
Confidence            7889999999999998776542 2 444443      26999999999997554332  111111  3567999999999


Q ss_pred             CCHHHHHHHHHHHHHcCC
Q 028329          163 VNVQQCFEELVLKILDTP  180 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~~~~  180 (210)
                      .|+++++++|.+.+....
T Consensus       369 ~Gi~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          369 QGIDSLETAILEIVQTGK  386 (462)
T ss_dssp             BSHHHHHHHHHHHHTTSS
T ss_pred             CCHHHHHHHHHHHHhccC
Confidence            999999999999886543

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.87  E-value=5.9e-21  Score=153.79  Aligned_cols=164  Identities=16%  Similarity=0.110  Sum_probs=104.9

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCC---CCCC-C--CceeeeEEEEEEE-------------C--C----eEEEEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNF---EELS-P--TIGVDFKVKYVDV-------------G--G----KKLKLAI   66 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~---~~~~-~--~~~~~~~~~~~~~-------------~--~----~~~~~~l   66 (210)
                      ...++|+++|+.++|||||+++|++...   .... +  |....+....+..             .  +    ....+.+
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            4569999999999999999999985432   1111 1  3322332222211             1  1    1378999


Q ss_pred             EeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHH
Q 028329           67 WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGI  144 (210)
Q Consensus        67 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~  144 (210)
                      ||+||+..+...+...+..+|++++|+|+++........+ .+..+..   ....|+++++||+|+.....  ...+++.
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-~l~~~~~---l~~~~iivv~NK~Dl~~~~~~~~~~~~i~  161 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKE-HLMALEI---LGIDKIIIVQNKIDLVDEKQAEENYEQIK  161 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHH-HHHHHHH---TTCCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHH-HHHHHHH---cCCCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence            9999999988887777888999999999996532222222 1222222   12257999999999965432  2344555


Q ss_pred             HHHHH---hCCcEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329          145 NFARE---YGCLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       145 ~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      .++..   .+++++++||+++.|+++++++|.+.+...
T Consensus       162 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~  199 (408)
T 1s0u_A          162 EFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP  199 (408)
T ss_dssp             HHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred             HHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence            65554   357899999999999999999999876543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.86  E-value=1.8e-21  Score=159.51  Aligned_cols=158  Identities=15%  Similarity=0.097  Sum_probs=109.3

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCC----CC--CCCCCceeeeE--EEEEEECCeEEEEEEEeCCCccccccchhhcc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDN----FE--ELSPTIGVDFK--VKYVDVGGKKLKLAIWDTAGQERFRTLTSSYY   83 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~----~~--~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~   83 (210)
                      ...++|+++|++++|||||+++|++..    ..  ......+.+..  ...+.+++  ..+.+||+||+..+...+...+
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~   94 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   94 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence            457999999999999999999999766    11  11112222221  12233333  6799999999999988888889


Q ss_pred             cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHHh----CCcEEEE
Q 028329           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGINFAREY----GCLFIEC  157 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~----~~~~~~~  157 (210)
                      ..+|++++|+|+++...-... + ++..+..    .++|+++++||+|+.....  ...+++..++...    +++++++
T Consensus        95 ~~aD~~ilVvda~~g~~~qt~-e-~l~~~~~----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v  168 (482)
T 1wb1_A           95 DIIDLALIVVDAKEGPKTQTG-E-HMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI  168 (482)
T ss_dssp             TSCCEEEEEEETTTCSCHHHH-H-HHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred             hhCCEEEEEEecCCCccHHHH-H-HHHHHHH----cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence            999999999999984322221 1 2222222    3578899999999975322  1233445555554    5679999


Q ss_pred             ccCCCCCHHHHHHHHHHHHH
Q 028329          158 SAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       158 sa~~~~~i~~~~~~l~~~~~  177 (210)
                      ||++|.|+++++++|.+.+.
T Consensus       169 SA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          169 SAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHHhhc
Confidence            99999999999999999875

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.86  E-value=3.1e-21  Score=160.81  Aligned_cols=160  Identities=21%  Similarity=0.282  Sum_probs=114.0

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCC--CCC---------CC---CCceeeeE----EEEEEE-CCeEEEEEEEeCCCc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDN--FEE---------LS---PTIGVDFK----VKYVDV-GGKKLKLAIWDTAGQ   72 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~--~~~---------~~---~~~~~~~~----~~~~~~-~~~~~~~~l~D~~g~   72 (210)
                      +...+|+++|+.++|||||+++|+...  ...         ..   ...+.++.    ...+.. ++..+.+.||||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            456899999999999999999997521  110         00   01222322    111221 556789999999999


Q ss_pred             cccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC
Q 028329           73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC  152 (210)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~  152 (210)
                      ..+...+...++.+|++|+|+|+++..+...... |.....     .++|+++++||+|++...  ..+...++...+++
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~-~~~a~~-----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~  155 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVAN-FWKAVE-----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGL  155 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHH-HHHHHH-----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCC
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHH-HHHHHH-----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCC
Confidence            9999888888999999999999999888777666 554443     468999999999997543  12223444455565


Q ss_pred             ---cEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329          153 ---LFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       153 ---~~~~~sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                         +++++||++|.|++++|+++.+.+...
T Consensus       156 ~~~~vi~vSAktg~GI~~Lle~I~~~lp~p  185 (600)
T 2ywe_A          156 DPEEAILASAKEGIGIEEILEAIVNRIPPP  185 (600)
T ss_dssp             CGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             CcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence               389999999999999999999988543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.86  E-value=5.9e-21  Score=154.89  Aligned_cols=156  Identities=17%  Similarity=0.176  Sum_probs=106.7

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCC------------------------------CCCCceeeeEEEEEEECC
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE------------------------------LSPTIGVDFKVKYVDVGG   59 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~   59 (210)
                      +....++|+++|++++|||||+++|+......                              .....+.+.......+..
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~   92 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET   92 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence            44567999999999999999999995432100                              001234455554445555


Q ss_pred             eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCccc---HH---HHHHHHHHHHhhhccCCCCc-EEEEEeCCCC
Q 028329           60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---FT---NLSDVWAKEIDLYSTNQDCI-KLLVGNKVDK  132 (210)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~  132 (210)
                      ....+.+|||||+..|...+...+..+|++|+|+|+++...   |+   .... .+..+.    ..++| +++++||+|+
T Consensus        93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e-~l~~~~----~~~v~~iIvviNK~Dl  167 (439)
T 3j2k_7           93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE-HAMLAK----TAGVKHLIVLINKMDD  167 (439)
T ss_pred             CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHH-HHHHHH----HcCCCeEEEEeecCCC
Confidence            56789999999999999988888999999999999998642   11   1111 112222    23466 8999999998


Q ss_pred             CCCc------eecHHHHHHHHHHhC------CcEEEEccCCCCCHHHHHH
Q 028329          133 ESER------VVTKKEGINFAREYG------CLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus       133 ~~~~------~~~~~~~~~~~~~~~------~~~~~~sa~~~~~i~~~~~  170 (210)
                      ....      ....++...++...+      ++++++||++|.|++++++
T Consensus       168 ~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          168 PTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            5321      112233444444444      4699999999999999665

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.86  E-value=5e-22  Score=163.18  Aligned_cols=153  Identities=14%  Similarity=0.066  Sum_probs=101.0

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCC------------------------------CCCCCceeeeEEEEEEECCeE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE------------------------------ELSPTIGVDFKVKYVDVGGKK   61 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~   61 (210)
                      ...+||+++|++++|||||+++|++....                              ......+.++......+....
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            35799999999999999999999754110                              001123444444444555566


Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHH-----HHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTN-----LSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~  136 (210)
                      ..+.|||+||+..|...+...+..+|++|+|+|+++..++..     ...........   ....|++||+||+|+...+
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~---~~~~~iIvviNK~Dl~~~~  187 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---LGIHNLIIAMNKMDNVDWS  187 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH---TTCCCEEEEEECGGGGTTC
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH---cCCCcEEEEEECcCcccch
Confidence            789999999999999999999999999999999998754322     11112222221   2235699999999997543


Q ss_pred             eecHHHH----HHHHHHh-----CCcEEEEccCCCCCHHH
Q 028329          137 VVTKKEG----INFAREY-----GCLFIECSAKTRVNVQQ  167 (210)
Q Consensus       137 ~~~~~~~----~~~~~~~-----~~~~~~~sa~~~~~i~~  167 (210)
                      ....+++    ..++...     +++++++||++|.|+++
T Consensus       188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            3333333    3333333     35799999999999875

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.86  E-value=2.5e-21  Score=150.44  Aligned_cols=120  Identities=16%  Similarity=0.138  Sum_probs=95.7

Q ss_pred             eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCC----------CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028329           60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK  129 (210)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK  129 (210)
                      ..+.+.+||++|++.++..|..++++++++|+|||++          +.+++.+... |+..+.......++|++|++||
T Consensus       165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~-~~~~i~~~~~~~~~~iiL~~NK  243 (327)
T 3ohm_A          165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSVILFLNK  243 (327)
T ss_dssp             TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHH-HHHHHHTSGGGTTCEEEEEEEC
T ss_pred             eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHH-HHHHHhhhhccCCceEEEEEEC
Confidence            3478999999999999999999999999999999665          6677877777 4444433344467999999999


Q ss_pred             CCCCCCc----------------eecHHHHHHHHH----------HhCCcEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028329          130 VDKESER----------------VVTKKEGINFAR----------EYGCLFIECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       130 ~D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      +|+..++                ..+.+++..++.          ..++.+++|||+++.||+.+|+.+.+.+++..
T Consensus       244 ~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          244 KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  320 (327)
T ss_dssp             HHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             chhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence            9985433                356677777743          34566899999999999999999999998654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.86  E-value=3.1e-21  Score=156.79  Aligned_cols=161  Identities=22%  Similarity=0.186  Sum_probs=108.7

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCccccccc-----------
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQERFRTL-----------   78 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----------   78 (210)
                      +..++|+++|++|||||||+++|++.......+.++++.  ....+.+++.  .+.+|||+|.......           
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            456999999999999999999999887543334333333  2334556665  5789999996432221           


Q ss_pred             -hhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-H----HhCC
Q 028329           79 -TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-R----EYGC  152 (210)
Q Consensus        79 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-~----~~~~  152 (210)
                       ....+..+|++++|+|+++..+.....  +...+.    ..++|+++|+||+|+...+....++..... .    ...+
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~~--i~~~l~----~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  329 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQR--MAGLME----RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYS  329 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHH----HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTS
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCC
Confidence             123466789999999999876655421  333333    246899999999999765443333332222 2    2357


Q ss_pred             cEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028329          153 LFIECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       153 ~~~~~sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      +++++||++|.|++++|+.+.+.+.+..
T Consensus       330 ~~~~~SA~~g~gv~~l~~~i~~~~~~~~  357 (439)
T 1mky_A          330 PLIFTSADKGWNIDRMIDAMNLAYASYT  357 (439)
T ss_dssp             CEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence            8999999999999999999998876644

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.86  E-value=3.1e-22  Score=163.42  Aligned_cols=159  Identities=16%  Similarity=0.133  Sum_probs=105.3

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC--------ccccccchh
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG--------QERFRTLTS   80 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g--------~~~~~~~~~   80 (210)
                      .......+|+++|.+|||||||+++|++..+....++++.+..............+.+|||||        +..+...+.
T Consensus        18 ~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~   97 (456)
T 4dcu_A           18 GSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE   97 (456)
T ss_dssp             -----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred             hhhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence            333456899999999999999999999988766666778777777667766667899999999        666677777


Q ss_pred             hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEcc
Q 028329           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSA  159 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa  159 (210)
                      .++..+|++|+|+|..+..+...  ..+...+.    ..++|+++|+||+|+......    ... ...++. .++++||
T Consensus        98 ~~~~~ad~il~VvD~~~~~~~~d--~~l~~~l~----~~~~pvilV~NK~D~~~~~~~----~~e-~~~lg~~~~~~iSA  166 (456)
T 4dcu_A           98 IAMDEADVIIFMVNGREGVTAAD--EEVAKILY----RTKKPVVLAVNKLDNTEMRAN----IYD-FYSLGFGEPYPISG  166 (456)
T ss_dssp             HHHHHCSEEEEEEESSSCSCHHH--HHHHHHHT----TCCSCEEEEEECC-------------CC-SGGGSSSSEEECCT
T ss_pred             hhHhhCCEEEEEEeCCCCCChHH--HHHHHHHH----HcCCCEEEEEECccchhhhhh----HHH-HHHcCCCceEEeec
Confidence            88899999999999877544322  22444443    357899999999998533211    111 112343 4789999


Q ss_pred             CCCCCHHHHHHHHHHHHHc
Q 028329          160 KTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~  178 (210)
                      ++|.|+.++++++.+.+.+
T Consensus       167 ~~g~gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          167 THGLGLGDLLDAVAEHFKN  185 (456)
T ss_dssp             TTCTTHHHHHHHHHTTGGG
T ss_pred             ccccchHHHHHHHHhhccc
Confidence            9999999999999887654

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.86  E-value=6.1e-21  Score=153.82  Aligned_cols=167  Identities=16%  Similarity=0.111  Sum_probs=111.7

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCC---CCCC-C--CceeeeEEEEEEE-------------C--C----eEEE
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF---EELS-P--TIGVDFKVKYVDV-------------G--G----KKLK   63 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~---~~~~-~--~~~~~~~~~~~~~-------------~--~----~~~~   63 (210)
                      ......++|+++|++++|||||+++|++...   .... +  |....+....+..             .  +    ....
T Consensus         5 ~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~   84 (410)
T 1kk1_A            5 KSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRR   84 (410)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEE
T ss_pred             ccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccE
Confidence            3456779999999999999999999985432   1111 1  3322232222211             0  1    1378


Q ss_pred             EEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHH
Q 028329           64 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKK  141 (210)
Q Consensus        64 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~  141 (210)
                      +.+||+||+..+.......+..+|++|+|+|+++........+ .+..+...   ...|+++++||+|+.....  ...+
T Consensus        85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~  160 (410)
T 1kk1_A           85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE-HLMALQII---GQKNIIIAQNKIELVDKEKALENYR  160 (410)
T ss_dssp             EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHH-HHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHH-HHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHH
Confidence            9999999999888877777888999999999996531222222 11222221   2257899999999975432  2233


Q ss_pred             HHHHHHHH---hCCcEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329          142 EGINFARE---YGCLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       142 ~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      ++..++..   .+++++++||+++.|+++++++|.+.+...
T Consensus       161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p  201 (410)
T 1kk1_A          161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP  201 (410)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence            44455443   357899999999999999999998876543

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.85  E-value=1.9e-21  Score=148.84  Aligned_cols=159  Identities=19%  Similarity=0.242  Sum_probs=92.7

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCC-C--------CCCceeeeEEEEEEECCeEEEEEEEeCCCccc-------c
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-L--------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER-------F   75 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~   75 (210)
                      ...++|+++|.+|+|||||+|+|++..... .        .++.+.+.....+..++..+.+.+|||||...       +
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            356999999999999999999988765432 2        22344444444444455667999999999632       2


Q ss_pred             ccch-------hhcc-------------cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329           76 RTLT-------SSYY-------------RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        76 ~~~~-------~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~  135 (210)
                      ....       ..++             ..+|+++++++.+..... .....+...+..     .+|+++|+||+|+...
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~-~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~  159 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK-PLDIEFMKRLHE-----KVNIIPLIAKADTLTP  159 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCC-HHHHHHHHHHTT-----TSCEEEEESSGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCC-HHHHHHHHHHhc-----cCCEEEEEeccCCCCH
Confidence            2221       1112             237899999987653222 222224444432     6899999999998644


Q ss_pred             ceec--HHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329          136 RVVT--KKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       136 ~~~~--~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                      ....  .+.+...+...+++++.+|++++.++++++++|.+.+
T Consensus       160 ~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          160 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            3322  2344555566789999999999999999999988754

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.85  E-value=7.1e-22  Score=156.50  Aligned_cols=164  Identities=20%  Similarity=0.271  Sum_probs=92.7

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCC-CCC---------CCceeeeEEEEEEECCeEEEEEEEeCCCc-------cc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELS---------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQ-------ER   74 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------~~   74 (210)
                      ...++|+++|++|+|||||+++|++.... ..+         ++.+.......+..++....+.+||+||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            35699999999999999999998765432 111         22333333333344566778999999998       55


Q ss_pred             cccchh-------hcccCc-------------cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329           75 FRTLTS-------SYYRGA-------------QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        75 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~  134 (210)
                      +..++.       .++..+             |+++|+++.. ..++..+...|...+     ...+|+|+|+||+|+..
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~  188 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLT  188 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCC
Confidence            555554       333332             3455555432 345555543354443     25689999999999976


Q ss_pred             CceecH--HHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028329          135 ERVVTK--KEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       135 ~~~~~~--~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~  182 (210)
                      .+.+..  +++..++...+++++++||+++.+ ++.|.++.+.+.+..+.
T Consensus       189 ~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~  237 (361)
T 2qag_A          189 LKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPF  237 (361)
T ss_dssp             HHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCC
Confidence            554443  456666667789999999999999 88899999988766544

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.85  E-value=1.4e-20  Score=148.06  Aligned_cols=118  Identities=13%  Similarity=0.136  Sum_probs=91.1

Q ss_pred             eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCC----------CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028329           60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK  129 (210)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK  129 (210)
                      ..+.+.+||++|++.++..|..++++++++|+|||++          +.++++.... |+..+.......++|++||+||
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~-~~~~i~~~~~~~~~piiLvgNK  259 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFLNK  259 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHH-HHHHHHTCGGGSSCEEEEEEEC
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHH-HHHHHHhccccCCCeEEEEEEC
Confidence            5789999999999999999999999999999999998          7788999888 5555544333467999999999


Q ss_pred             CCCCCCce---------------------ecHHHHHHHHHH----------------hCCcEEEEccCCCCCHHHHHHHH
Q 028329          130 VDKESERV---------------------VTKKEGINFARE----------------YGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus       130 ~D~~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~sa~~~~~i~~~~~~l  172 (210)
                      +|+..++.                     ...+++..++..                ..+.+++|||+++.||+++|+++
T Consensus       260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v  339 (354)
T 2xtz_A          260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV  339 (354)
T ss_dssp             HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence            99843211                     124556666433                12346899999999999999999


Q ss_pred             HHHHHc
Q 028329          173 VLKILD  178 (210)
Q Consensus       173 ~~~~~~  178 (210)
                      .+.+.+
T Consensus       340 ~~~I~~  345 (354)
T 2xtz_A          340 DETLRR  345 (354)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.85  E-value=3.6e-20  Score=146.66  Aligned_cols=163  Identities=19%  Similarity=0.112  Sum_probs=107.0

Q ss_pred             EE-EEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccc---------cccchhhcc
Q 028329           15 FK-LLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER---------FRTLTSSYY   83 (210)
Q Consensus        15 ~~-i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~   83 (210)
                      ++ |+++|++|||||||+++|++..... ..+....+.....+.+++  ..+.+|||+|...         +...+ ..+
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~  255 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEA  255 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHH
Confidence            44 9999999999999999999876521 122222234455566666  4678999999622         22222 246


Q ss_pred             cCccEEEEEEeCCCcc--cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee-cHHHHHHHHHHh---CCcEEEE
Q 028329           84 RGAQGIIMVYDVTRRD--TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-TKKEGINFAREY---GCLFIEC  157 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~  157 (210)
                      ..+|++++|+|++++.  ....... |...+... ...+.|+++|+||+|+...... ....+..++...   +.+++++
T Consensus       256 ~~aD~il~VvD~s~~~~~~~~~~~~-~~~~L~~l-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  333 (364)
T 2qtf_A          256 KYSDALILVIDSTFSENLLIETLQS-SFEILREI-GVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPI  333 (364)
T ss_dssp             GGSSEEEEEEETTSCHHHHHHHHHH-HHHHHHHH-TCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             HhCCEEEEEEECCCCcchHHHHHHH-HHHHHHHh-CcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence            7899999999999876  4444433 55555542 2356899999999998654311 112222333444   2368999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcCCCc
Q 028329          158 SAKTRVNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       158 sa~~~~~i~~~~~~l~~~~~~~~~~  182 (210)
                      ||+++.|+++++++|.+.+......
T Consensus       334 SA~~g~gi~~L~~~I~~~l~~~~~~  358 (364)
T 2qtf_A          334 SALKRTNLELLRDKIYQLATQLSLE  358 (364)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHHC--
T ss_pred             ECCCCcCHHHHHHHHHHHhcccCCC
Confidence            9999999999999999987655433

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.84  E-value=1e-20  Score=153.47  Aligned_cols=153  Identities=21%  Similarity=0.170  Sum_probs=104.3

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCC---CC---------C-CC-------------------ceeeeEEEEEEECC
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE---EL---------S-PT-------------------IGVDFKVKYVDVGG   59 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~---~~---------~-~~-------------------~~~~~~~~~~~~~~   59 (210)
                      ...++|+++|++++|||||+++|++....   ..         . .+                   .+.+.......+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            45699999999999999999999865411   00         0 01                   12222222223333


Q ss_pred             eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee-
Q 028329           60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-  138 (210)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-  138 (210)
                      ....+.+||+||+..|...+...+..+|++|+|+|+++...... .. ++..+..   ..-.|+++|+||+|+...... 
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~-~l~~~~~---~~~~~iIvviNK~Dl~~~~~~~  176 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RR-HSYIASL---LGIKHIVVAINKMDLNGFDERV  176 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HH-HHHHHHH---TTCCEEEEEEECTTTTTSCHHH
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HH-HHHHHHH---cCCCeEEEEEEcCcCCcccHHH
Confidence            45679999999999998888888999999999999998754332 22 3333332   122368999999999753211 


Q ss_pred             ---cHHHHHHHHHHhC-----CcEEEEccCCCCCHHHHH
Q 028329          139 ---TKKEGINFAREYG-----CLFIECSAKTRVNVQQCF  169 (210)
Q Consensus       139 ---~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~  169 (210)
                         ..++...++..++     ++++++||++|.|+++++
T Consensus       177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~  215 (434)
T 1zun_B          177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS  215 (434)
T ss_dssp             HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred             HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence               2344556666677     679999999999998843

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.84  E-value=1.2e-20  Score=149.82  Aligned_cols=146  Identities=8%  Similarity=0.029  Sum_probs=105.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   95 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (210)
                      +|+++|++++|||||+++|+         ..+.+.......+......+.+||+||+..|.......++.+|++++|+| 
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred             EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence            99999999999999999998         12233322223444445679999999999988877778899999999999 


Q ss_pred             CCcccHHHHHHHHHHHHhhhccCCCCcE-EEEEe-CCCCCCCceecH--HHHHHHHHHh---CCcEEE--EccCC---CC
Q 028329           96 TRRDTFTNLSDVWAKEIDLYSTNQDCIK-LLVGN-KVDKESERVVTK--KEGINFAREY---GCLFIE--CSAKT---RV  163 (210)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~pi-ivv~n-K~D~~~~~~~~~--~~~~~~~~~~---~~~~~~--~sa~~---~~  163 (210)
                      ++ ..+....+ ++..+..    .++|. ++++| |+|+ .......  +++..++...   .+++++  +||++   +.
T Consensus        93 ~~-g~~~qt~e-~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~  165 (370)
T 2elf_A           93 PQ-GLDAHTGE-CIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE  165 (370)
T ss_dssp             TT-CCCHHHHH-HHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred             CC-CCcHHHHH-HHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence            54 33444444 4444433    34666 88888 9998 4332221  3444444443   367999  99999   99


Q ss_pred             CHHHHHHHHHHHHHc
Q 028329          164 NVQQCFEELVLKILD  178 (210)
Q Consensus       164 ~i~~~~~~l~~~~~~  178 (210)
                      |++++++.|.+.+..
T Consensus       166 gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          166 GVDELKARINEVAEK  180 (370)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhccc
Confidence            999999999987754

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.84  E-value=1.2e-20  Score=151.54  Aligned_cols=160  Identities=17%  Similarity=0.116  Sum_probs=112.0

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCC-------CCCC--------CCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDN-------FEEL--------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT   77 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~-------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   77 (210)
                      ..++|+++|++++|||||+++|++..       +...        ....+.+.......+......+.+||+||+..|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            35899999999999999999998631       1110        01233344433344444556789999999999888


Q ss_pred             chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCce---ecHHHHHHHHHHhC--
Q 028329           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERV---VTKKEGINFAREYG--  151 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~---~~~~~~~~~~~~~~--  151 (210)
                      .....+..+|++|+|+|+++......... | ..+..    .++| +++++||+|+.....   ...+++..++...+  
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~-l-~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~  155 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTREH-L-LLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK  155 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHHH-H-HHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHHHH-H-HHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence            88888999999999999998654433322 3 33332    3577 689999999864221   12245566666665  


Q ss_pred             ---CcEEEEccCCCCC----------HHHHHHHHHHHHHc
Q 028329          152 ---CLFIECSAKTRVN----------VQQCFEELVLKILD  178 (210)
Q Consensus       152 ---~~~~~~sa~~~~~----------i~~~~~~l~~~~~~  178 (210)
                         ++++++||+++.|          +.++++.|.+.+..
T Consensus       156 ~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~  195 (397)
T 1d2e_A          156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV  195 (397)
T ss_dssp             TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence               5799999998764          88888888876643

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.84  E-value=1.8e-21  Score=157.91  Aligned_cols=157  Identities=21%  Similarity=0.249  Sum_probs=103.9

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcC--CCCCCC----------------------------CCceeeeEEEEEEECCeE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSD--NFEELS----------------------------PTIGVDFKVKYVDVGGKK   61 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~--~~~~~~----------------------------~~~~~~~~~~~~~~~~~~   61 (210)
                      ...++|+++|++++|||||+++|+..  .+....                            ...+.+.......++...
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            35699999999999999999999864  221100                            012233333333444455


Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHH---HHHHHHhhhccCCC-CcEEEEEeCCCCCCCc-
Q 028329           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSD---VWAKEIDLYSTNQD-CIKLLVGNKVDKESER-  136 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~~-~piivv~nK~D~~~~~-  136 (210)
                      ..+.+||+||+..+...+...+..+|++|+|+|+++ .+|+....   +..+.+.. ....+ .|+++++||+|+.... 
T Consensus        84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~-~~~~~~~~iivviNK~Dl~~~~~  161 (435)
T 1jny_A           84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIIL-AKTMGLDQLIVAVNKMDLTEPPY  161 (435)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHH-HHHTTCTTCEEEEECGGGSSSTT
T ss_pred             eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHH-HHHcCCCeEEEEEEcccCCCccc
Confidence            679999999999999988889999999999999998 66664332   01111111 11123 3689999999996521 


Q ss_pred             -----eecHHHHHHHHHHhC-----CcEEEEccCCCCCHHHHHH
Q 028329          137 -----VVTKKEGINFAREYG-----CLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus       137 -----~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~~  170 (210)
                           ....+++..++...+     ++++++||++|.|+.++++
T Consensus       162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence                 122345666666665     6799999999999986554

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.84  E-value=3e-21  Score=159.38  Aligned_cols=120  Identities=14%  Similarity=0.141  Sum_probs=85.0

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCC------------------CC---CCCceeeeEEEEEEECCeEEEEEEEe
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE------------------EL---SPTIGVDFKVKYVDVGGKKLKLAIWD   68 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~------------------~~---~~~~~~~~~~~~~~~~~~~~~~~l~D   68 (210)
                      +.....+|+++|++|+|||||+++|+.....                  ..   ....+.++......+......+.|||
T Consensus         9 ~~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liD   88 (528)
T 3tr5_A            9 QTAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLD   88 (528)
T ss_dssp             HHHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEEC
T ss_pred             hhhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEE
Confidence            3456789999999999999999999621110                  00   00122222222223333457799999


Q ss_pred             CCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329           69 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~  135 (210)
                      |||+..+...+...++.+|++|+|+|+++..+...... |.. +.    ..++|+++|+||+|+...
T Consensus        89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~-~~~-~~----~~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKL-MEV-CR----LRHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHH-HHH-HH----TTTCCEEEEEECTTSCCS
T ss_pred             CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHH-HH----HcCCCEEEEEeCCCCccc
Confidence            99999999999999999999999999999877665543 433 32    246899999999998643

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.83  E-value=7.4e-21  Score=150.22  Aligned_cols=118  Identities=15%  Similarity=0.134  Sum_probs=87.5

Q ss_pred             EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCC----------cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028329           61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV  130 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~  130 (210)
                      .+.+.+||++|+..++..|..++++++++|+|||+++          .+++..... |+..+.......++|+||++||+
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~-~~~~i~~~~~~~~~piILv~NK~  278 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN-IFETIVNNRVFSNVSIILFLNKT  278 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHH-HHHHHhcchhhCCCCEEEEEECh
Confidence            4789999999999999999999999999999999999          778998888 44444433334679999999999


Q ss_pred             CCCCCc----------------eecHHHHHHHHH-----------HhCCcEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329          131 DKESER----------------VVTKKEGINFAR-----------EYGCLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       131 D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      |+..++                ....+++..++.           ..++.+++|||+++.|++++|+++.+.+.+.
T Consensus       279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~  354 (362)
T 1zcb_A          279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  354 (362)
T ss_dssp             HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHH
Confidence            985322                145666666652           2356789999999999999999999988643

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.83  E-value=1.8e-22  Score=166.17  Aligned_cols=158  Identities=18%  Similarity=0.177  Sum_probs=109.3

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      +.++|+++|++++|||||+++|.+..+.... ++.+.++....+... ....+.||||||+..+...+...+..+|++++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            4678999999999999999999876543222 222222222222221 12368999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec-HHHHHHH---HHHh--CCcEEEEccCCCCCH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT-KKEGINF---AREY--GCLFIECSAKTRVNV  165 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~sa~~~~~i  165 (210)
                      |+|+++......... | ..+.    ..++|++|++||+|++...... ..+...+   +..+  .++++++||++|.|+
T Consensus        82 VVDa~dg~~~qt~e~-l-~~~~----~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI  155 (537)
T 3izy_P           82 VVAADDGVMKQTVES-I-QHAK----DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENM  155 (537)
T ss_dssp             ECBSSSCCCHHHHHH-H-HHHH----TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSS
T ss_pred             EEECCCCccHHHHHH-H-HHHH----HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCc
Confidence            999998765544432 2 2222    3468999999999986433221 1111111   0111  247999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028329          166 QQCFEELVLKIL  177 (210)
Q Consensus       166 ~~~~~~l~~~~~  177 (210)
                      +++|+++...+.
T Consensus       156 ~eLle~I~~l~~  167 (537)
T 3izy_P          156 MALAEATIALAE  167 (537)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             hhHHHHHHHhhh
Confidence            999999998764

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.83  E-value=5.8e-21  Score=138.53  Aligned_cols=122  Identities=19%  Similarity=0.232  Sum_probs=86.7

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccC----c
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRG----A   86 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~----~   86 (210)
                      ....++|+++|++|||||||+++|++..+.........+.     ..+.....+.+||+||...+...+..++..    +
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  119 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-----AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV  119 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCce-----eeeecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence            3567899999999999999999999887644221111111     111144678999999999888877777765    8


Q ss_pred             cEEEEEEeCC-CcccHHHHHHHHHHHHhhhc--cCCCCcEEEEEeCCCCCCCce
Q 028329           87 QGIIMVYDVT-RRDTFTNLSDVWAKEIDLYS--TNQDCIKLLVGNKVDKESERV  137 (210)
Q Consensus        87 d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~--~~~~~piivv~nK~D~~~~~~  137 (210)
                      |++++|||++ +..++..+..++...+....  ...++|+++|+||+|+.....
T Consensus       120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A          120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence            9999999999 88889888874444433221  235799999999999975543

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.83  E-value=1e-20  Score=152.33  Aligned_cols=161  Identities=15%  Similarity=0.115  Sum_probs=113.2

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcC--------CCCCCC--------CCceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSD--------NFEELS--------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQER   74 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (210)
                      ....++|+++|++++|||||+++|++.        .+....        ...+.++......+......+.+||+||+..
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            346799999999999999999999863        211110        0233444444444544556789999999999


Q ss_pred             cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCce---ecHHHHHHHHHHh
Q 028329           75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERV---VTKKEGINFAREY  150 (210)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~---~~~~~~~~~~~~~  150 (210)
                      |.......+..+|++|+|+|+++..... ... |+..+..    .++| +++++||+|+.....   ...+++..++...
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~-~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~  161 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMPQ-TRE-HILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY  161 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHH-HHH-HHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcHH-HHH-HHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHh
Confidence            9888888899999999999999876433 333 4444443    3577 889999999974221   1223455666665


Q ss_pred             C-----CcEEEEccCCCCC------------------HHHHHHHHHHHHH
Q 028329          151 G-----CLFIECSAKTRVN------------------VQQCFEELVLKIL  177 (210)
Q Consensus       151 ~-----~~~~~~sa~~~~~------------------i~~~~~~l~~~~~  177 (210)
                      +     ++++++||+++.|                  +.++++.+.+.+.
T Consensus       162 ~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          162 EFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             TSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             cccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence            5     6799999999987                  6777777766554

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.83  E-value=1.3e-20  Score=146.90  Aligned_cols=118  Identities=19%  Similarity=0.226  Sum_probs=93.4

Q ss_pred             eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCC----------CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028329           60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK  129 (210)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK  129 (210)
                      ..+.+.+||++|++.++..|..++++++++|+|||++          +.+++.+... |+..+.......++|++|++||
T Consensus       159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~-~~~~i~~~~~~~~~piiLv~NK  237 (340)
T 4fid_A          159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIA-VFKDIMTNEFLKGAVKLIFLNK  237 (340)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHH-HHHHHHHCGGGTTSEEEEEEEC
T ss_pred             eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHH-HHHHHhhhhccCCCeEEEEEEC
Confidence            4578999999999999999999999999999999998          6788888888 4444443344567999999999


Q ss_pred             CCCCCCce---------------ecHHHHHHHHHHh---------------------------CCcEEEEccCCCCCHHH
Q 028329          130 VDKESERV---------------VTKKEGINFAREY---------------------------GCLFIECSAKTRVNVQQ  167 (210)
Q Consensus       130 ~D~~~~~~---------------~~~~~~~~~~~~~---------------------------~~~~~~~sa~~~~~i~~  167 (210)
                      +|+..++.               ...+++..++...                           .+.++++||++..+++.
T Consensus       238 ~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~  317 (340)
T 4fid_A          238 MDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKR  317 (340)
T ss_dssp             HHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHH
T ss_pred             chhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHH
Confidence            99843211               1345555444322                           35689999999999999


Q ss_pred             HHHHHHHHHHc
Q 028329          168 CFEELVLKILD  178 (210)
Q Consensus       168 ~~~~l~~~~~~  178 (210)
                      +|+.+.+.+++
T Consensus       318 vF~~v~~~Il~  328 (340)
T 4fid_A          318 VFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999987

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.83  E-value=6e-21  Score=160.19  Aligned_cols=156  Identities=16%  Similarity=0.114  Sum_probs=102.4

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC------------------------------CceeeeEEEEEEECCeE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP------------------------------TIGVDFKVKYVDVGGKK   61 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~   61 (210)
                      ...++|+++|++++|||||+++|++........                              ..|.++......+....
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            346899999999999999999998663321110                              12333333333334445


Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcc---cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee
Q 028329           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV  138 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~  138 (210)
                      ..+.||||||+..+...+...+..+|++|+|+|+++..   ++....+ +...+.........|++||+||+|+......
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~q-t~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~  323 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQ-TKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ  323 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSH-HHHHHHHHHTTTCCEEEEEEECTTTTTTCHH
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhH-HHHHHHHHHHcCCCeEEEEEecccccchhHH
Confidence            67999999999999998889999999999999998742   1100111 2222211111222459999999999753322


Q ss_pred             c----HHHHHHHHHHhC-----CcEEEEccCCCCCHHHH
Q 028329          139 T----KKEGINFAREYG-----CLFIECSAKTRVNVQQC  168 (210)
Q Consensus       139 ~----~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~  168 (210)
                      .    ..+...++...+     ++++++||++|.|+.++
T Consensus       324 ~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            2    223334444443     57999999999999876

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.82  E-value=3.4e-20  Score=154.82  Aligned_cols=157  Identities=21%  Similarity=0.147  Sum_probs=104.6

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----CceeeeEEEEE------------EECCeEEEEEEEeCCCcccc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-----TIGVDFKVKYV------------DVGGKKLKLAIWDTAGQERF   75 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~~~~~~l~D~~g~~~~   75 (210)
                      +.++|+++|++++|||||+++|++.......+     +.+..+.....            .++.....+.||||||+..|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            45799999999999999999998765433221     22211110000            00011125899999999999


Q ss_pred             ccchhhcccCccEEEEEEeCCC---cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec------------H
Q 028329           76 RTLTSSYYRGAQGIIMVYDVTR---RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT------------K  140 (210)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~------------~  140 (210)
                      ...+...++.+|++|+|+|+++   +.+++.+.     .+.    ..++|+++++||+|+.......            .
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-----~l~----~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~  154 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILR----MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD  154 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-----HHH----HTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-----HHH----HcCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence            9998888999999999999998   44443332     222    2468999999999986432110            0


Q ss_pred             H-----------HHHHHHHHhC---------------CcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329          141 K-----------EGINFAREYG---------------CLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       141 ~-----------~~~~~~~~~~---------------~~~~~~sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      +           +........+               ++++++||++|.|+++++++|...+..
T Consensus       155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~  218 (594)
T 1g7s_A          155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence            0           1111111112               379999999999999999999987753

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.81  E-value=8.1e-21  Score=155.20  Aligned_cols=156  Identities=19%  Similarity=0.150  Sum_probs=90.1

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCC--CCC----------------------C------CCCceeeeEEEEEEECCeE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDN--FEE----------------------L------SPTIGVDFKVKYVDVGGKK   61 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~--~~~----------------------~------~~~~~~~~~~~~~~~~~~~   61 (210)
                      ...++|+++|++++|||||+++|+...  +..                      .      ....+.|.......+....
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            467999999999999999999997421  110                      0      0012222222211222234


Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcc---cHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCc-
Q 028329           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESER-  136 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~-  136 (210)
                      ..+.|||+||+..|...+...+..+|++|+|+|+++..   +|+...+ +.+.+... ...++| ++|++||+|+.... 
T Consensus       121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~q-t~e~l~~~-~~~~vp~iivviNK~Dl~~~~~  198 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQ-TREHAVLA-RTQGINHLVVVINKMDEPSVQW  198 (467)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCC-HHHHHHHH-HHTTCSSEEEEEECTTSTTCSS
T ss_pred             eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCc-HHHHHHHH-HHcCCCEEEEEEECccCCCccc
Confidence            67899999999999988888899999999999999862   3322111 22222211 123566 89999999995421 


Q ss_pred             -----eecHHHHHHHHHHh-------CCcEEEEccCCCCCHHHHH
Q 028329          137 -----VVTKKEGINFAREY-------GCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus       137 -----~~~~~~~~~~~~~~-------~~~~~~~sa~~~~~i~~~~  169 (210)
                           ....+++..++...       +++++++||++|.|+.+++
T Consensus       199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                 11223455666655       3569999999999998765

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.81  E-value=1.2e-19  Score=158.68  Aligned_cols=161  Identities=15%  Similarity=0.062  Sum_probs=110.4

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCC-------CC--------CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDN-------FE--------ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF   75 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~-------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (210)
                      ....++|+++|++++|||||+++|++..       +.        ....+.+.++....+.++.....+.+|||||+..+
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            4467999999999999999999998631       10        01113444444333444455577999999999999


Q ss_pred             ccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCce---ecHHHHHHHHHHhC
Q 028329           76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERV---VTKKEGINFAREYG  151 (210)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~---~~~~~~~~~~~~~~  151 (210)
                      .......+..+|++|+|+|+++....+ ... ++..+..    .++| +||++||+|+.....   ...+++..++...+
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~Q-TrE-hL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G  446 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMPQ-TRE-HILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD  446 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCTT-HHH-HHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcHH-HHH-HHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence            888888899999999999999875433 333 3333332    2577 789999999975322   12345566666665


Q ss_pred             -----CcEEEEccCCC--------CCHHHHHHHHHHHHH
Q 028329          152 -----CLFIECSAKTR--------VNVQQCFEELVLKIL  177 (210)
Q Consensus       152 -----~~~~~~sa~~~--------~~i~~~~~~l~~~~~  177 (210)
                           ++++++||++|        .|+.++++.|.+.+.
T Consensus       447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence                 57999999999        468888888776554

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.80  E-value=2.9e-19  Score=131.27  Aligned_cols=160  Identities=16%  Similarity=0.142  Sum_probs=101.1

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc----------cccc
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER----------FRTL   78 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~   78 (210)
                      +.....+|+++|++|||||||+++|++..+ ....++.+.+.....+.+++   .+.+||+||...          +...
T Consensus        22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~   98 (210)
T 1pui_A           22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRA   98 (210)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHH
Confidence            345568999999999999999999998763 33344666655444344333   478999999642          2222


Q ss_pred             hhhcc---cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHHhC--
Q 028329           79 TSSYY---RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGINFAREYG--  151 (210)
Q Consensus        79 ~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~--  151 (210)
                      ...++   ..++++++++|+++..+.....  +...+.    ..+.|+++++||+|+.....  .....+..++...+  
T Consensus        99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--~~~~~~----~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~  172 (210)
T 1pui_A           99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQ--MIEWAV----DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD  172 (210)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHH----HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC
T ss_pred             HHHHHHhhhcccEEEEEEECCCCCchhHHH--HHHHHH----HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCC
Confidence            22233   5789999999999876653211  222222    24688899999999864321  11334455555444  


Q ss_pred             CcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329          152 CLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       152 ~~~~~~sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      +.++++|++++.++++++++|.+.+.+
T Consensus       173 ~~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          173 VQVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             CceEEEeecCCCCHHHHHHHHHHHHhh
Confidence            468899999999999999999887643

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.80  E-value=3.7e-20  Score=143.25  Aligned_cols=159  Identities=21%  Similarity=0.154  Sum_probs=100.8

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-----CCCce----------------------eeeE------------
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-----SPTIG----------------------VDFK------------   51 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-----~~~~~----------------------~~~~------------   51 (210)
                      ....++|+++|.+|||||||+++|++..+...     ...++                      ++..            
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~  102 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            34678999999999999999999998876421     11121                      0000            


Q ss_pred             -----------EEEEEECC-eEEEEEEEeCCCcc-------------ccccchhhcccCccEEE-EEEeCCCcccHHHHH
Q 028329           52 -----------VKYVDVGG-KKLKLAIWDTAGQE-------------RFRTLTSSYYRGAQGII-MVYDVTRRDTFTNLS  105 (210)
Q Consensus        52 -----------~~~~~~~~-~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~  105 (210)
                                 ...+.+.+ ....+.+|||||..             .+......++..++.++ +|+|+++..+.....
T Consensus       103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~  182 (299)
T 2aka_B          103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence                       00000000 12579999999964             23445566777787666 799998765444332


Q ss_pred             HHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH--hC-CcEEEEccCCCCCHHHHHHHHHH
Q 028329          106 DVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE--YG-CLFIECSAKTRVNVQQCFEELVL  174 (210)
Q Consensus       106 ~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~sa~~~~~i~~~~~~l~~  174 (210)
                      . +...+.    ..+.|+++|+||+|+........+........  .+ .+++++||+++.|++++|+++.+
T Consensus       183 ~-~~~~~~----~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~  249 (299)
T 2aka_B          183 K-IAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  249 (299)
T ss_dssp             H-HHHHHC----TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred             H-HHHHhC----CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence            2 444433    35689999999999965443222221110001  12 35789999999999999999877

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.80  E-value=5.9e-21  Score=155.67  Aligned_cols=152  Identities=16%  Similarity=0.143  Sum_probs=101.4

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCC--CCCC----------------C------C------CceeeeEEEEEEECCeE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDN--FEEL----------------S------P------TIGVDFKVKYVDVGGKK   61 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~--~~~~----------------~------~------~~~~~~~~~~~~~~~~~   61 (210)
                      ...++|+++|++++|||||+++|++..  +...                .      +      ..+.+.......+....
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            456999999999999999999998641  1100                0      0      01222222222333445


Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcc---cHH---HHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCC
Q 028329           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFT---NLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKES  134 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~  134 (210)
                      ..+.|||+||+..|...+...+..+|++|+|+|+++..   +|+   .... ++.....    .++| ++|++||+|+..
T Consensus        85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~-~~~~~~~----~~v~~iivviNK~Dl~~  159 (458)
T 1f60_A           85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAFT----LGVRQLIVAVNKMDSVK  159 (458)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHHH----TTCCEEEEEEECGGGGT
T ss_pred             ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH-HHHHHHH----cCCCeEEEEEEcccccc
Confidence            67999999999999988888999999999999999753   221   2222 2222221    3454 899999999963


Q ss_pred             Cce----ecHHHHHHHHHHhC-----CcEEEEccCCCCCHHHH
Q 028329          135 ERV----VTKKEGINFAREYG-----CLFIECSAKTRVNVQQC  168 (210)
Q Consensus       135 ~~~----~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~  168 (210)
                      ...    ...+++..++...+     ++++++||++|.|+.++
T Consensus       160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            211    12334555556665     57999999999998754

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.79  E-value=4.8e-19  Score=134.62  Aligned_cols=122  Identities=20%  Similarity=0.208  Sum_probs=83.0

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCccccccchhhccc-----
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR-----   84 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-----   84 (210)
                      ...++|+++|++|+|||||+++|++.......+..+.+.  ....+..++  ..+.+|||||+..+......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            357999999999999999999999887644333333333  333334444  47999999998776654433332     


Q ss_pred             ----CccEEEEEEeCCCcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCc
Q 028329           85 ----GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        85 ----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~  136 (210)
                          .+|++++|++++... +......|+..+..... ....|+++|+||+|+...+
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~  167 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPD  167 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCST
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCC
Confidence                789999999987654 44443336666654322 2235899999999995443

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.79  E-value=9.6e-21  Score=158.52  Aligned_cols=151  Identities=21%  Similarity=0.168  Sum_probs=81.8

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCC------------------------------CCCCCceeeeEEEEEEECCe
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFE------------------------------ELSPTIGVDFKVKYVDVGGK   60 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~   60 (210)
                      ....++|+++|++++|||||+++|+.....                              ......+.|.......+...
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            346799999999999999999999632100                              00012344444444444555


Q ss_pred             EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcc---cH---HHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCC
Q 028329           61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TF---TNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKE  133 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~  133 (210)
                      ...+.||||||+..|...+...+..+|++|+|+|+++..   .+   ..... .+..+..    .++| +|||+||+|+.
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e-~l~~~~~----lgip~iIvviNKiDl~  328 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTRE-HAYLLRA----LGISEIVVSVNKLDLM  328 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHH-HHHHHHH----SSCCCEEEEEECGGGG
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHH-HHHHHHH----cCCCeEEEEEeccccc
Confidence            678999999999999988888899999999999998643   11   11111 2222222    2454 89999999986


Q ss_pred             CCceec----HHHHHHHH-HHhCC-----cEEEEccCCCCCHH
Q 028329          134 SERVVT----KKEGINFA-REYGC-----LFIECSAKTRVNVQ  166 (210)
Q Consensus       134 ~~~~~~----~~~~~~~~-~~~~~-----~~~~~sa~~~~~i~  166 (210)
                      ......    ..++..++ ...++     +++++||++|.|+.
T Consensus       329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            422111    22333333 33344     69999999999998

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.79  E-value=3.2e-21  Score=157.57  Aligned_cols=156  Identities=17%  Similarity=0.227  Sum_probs=102.7

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      .+..+|+++|++++|||||+++|....+.... ..+.+.......+......+.||||||+..|...+...+..+|++++
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e-~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGE-AGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTT-BCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCcccc-CCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            35679999999999999999999865443211 11111111111122223468999999999999998888999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc--eecHH--HHHHHHHHhC--CcEEEEccCCCCCH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER--VVTKK--EGINFAREYG--CLFIECSAKTRVNV  165 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~--~~~~~~~~~~--~~~~~~sa~~~~~i  165 (210)
                      |+|+++......... | ..+.    ..++|+++++||+|++...  .+..+  +...+...++  ++++++||++|.|+
T Consensus        81 VVda~~g~~~qT~e~-l-~~~~----~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI  154 (501)
T 1zo1_I           81 VVAADDGVMPQTIEA-I-QHAK----AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGI  154 (501)
T ss_dssp             EEETTTBSCTTTHHH-H-HHHH----HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTC
T ss_pred             EeecccCccHHHHHH-H-HHHH----hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCc
Confidence            999998533222221 2 2222    2468999999999996421  11100  0000111222  68999999999999


Q ss_pred             HHHHHHHHH
Q 028329          166 QQCFEELVL  174 (210)
Q Consensus       166 ~~~~~~l~~  174 (210)
                      +++|+++..
T Consensus       155 ~eLle~I~~  163 (501)
T 1zo1_I          155 DELLDAILL  163 (501)
T ss_dssp             TTHHHHTTT
T ss_pred             chhhhhhhh
Confidence            999999864

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.78  E-value=1.6e-18  Score=132.25  Aligned_cols=123  Identities=20%  Similarity=0.158  Sum_probs=83.8

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchh-------h--cc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS-------S--YY   83 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~-------~--~~   83 (210)
                      ..++|+++|.+|+|||||+++|++..+....+..+.+.....+.+......+.+|||||...+.....       .  ..
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~  117 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD  117 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence            57999999999999999999999887654444444444333333433456799999999866543221       1  13


Q ss_pred             cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCc
Q 028329           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~  136 (210)
                      ..+|++++|+|++.. ++......|...+..... ....|+++|+||+|+....
T Consensus       118 ~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          118 KTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             CEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             CCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence            468999999998753 344443336666654321 2237999999999996554

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.77  E-value=4.1e-18  Score=140.82  Aligned_cols=118  Identities=15%  Similarity=0.137  Sum_probs=80.1

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCC---------------------CCCCceeeeEEEEEEECCeEEEEEEEeC
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE---------------------LSPTIGVDFKVKYVDVGGKKLKLAIWDT   69 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~   69 (210)
                      .....+|+++|++++|||||+++|+......                     .....+.++......+......+.+|||
T Consensus        10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDT   89 (529)
T 2h5e_A           10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDT   89 (529)
T ss_dssp             HHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECC
T ss_pred             hcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEEC
Confidence            3567999999999999999999998532100                     0012222222222223334567999999


Q ss_pred             CCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329           70 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        70 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~  134 (210)
                      ||+..+...+...+..+|++|+|+|+++...... .. ++..+    ...++|+++++||+|+..
T Consensus        90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~-~~~~~----~~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RK-LMEVT----RLRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HH-HHHHH----TTTTCCEEEEEECTTSCC
T ss_pred             CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HH-HHHHH----HHcCCCEEEEEcCcCCcc
Confidence            9999998888888999999999999998643221 22 22222    235789999999999854

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.77  E-value=3.8e-18  Score=144.75  Aligned_cols=117  Identities=11%  Similarity=0.072  Sum_probs=83.0

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----------------CceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-----------------TIGVDFKVKYVDVGGKKLKLAIWDTAGQE   73 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (210)
                      .....+|+++|++|+|||||+++|++........                 ..+.++......+....+.+.+|||||+.
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~   85 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG   85 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred             cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence            4566899999999999999999998433210000                 01223333333333345789999999999


Q ss_pred             ccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329           74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~  133 (210)
                      .+...+...++.+|++++|+|+++....... . ++..+..    .++|+++++||+|+.
T Consensus        86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~-~~~~~~~----~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           86 DFVGEIRGALEAADAALVAVSAEAGVQVGTE-R-AWTVAER----LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-H-HHHHHHH----TTCCEEEEEECGGGC
T ss_pred             chHHHHHHHHhhcCcEEEEEcCCcccchhHH-H-HHHHHHH----ccCCEEEEecCCchh
Confidence            9988888899999999999998876544333 2 3333332    368999999999986

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.76  E-value=3.7e-18  Score=145.42  Aligned_cols=164  Identities=16%  Similarity=0.173  Sum_probs=107.9

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCcee--------------eeE--------------------------
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGV--------------DFK--------------------------   51 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~--------------~~~--------------------------   51 (210)
                      ...++|+|+|.+|+|||||+|+|++.........+++              +..                          
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            3579999999999999999999998876443332221              110                          


Q ss_pred             ---------------EEEEEECCeE--EEEEEEeCCCccc---cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHH
Q 028329           52 ---------------VKYVDVGGKK--LKLAIWDTAGQER---FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKE  111 (210)
Q Consensus        52 ---------------~~~~~~~~~~--~~~~l~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~  111 (210)
                                     ...+......  ..+.||||||...   ....+..++..+|++++|+|++++.+...... |...
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~-l~~~  225 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRY-LENY  225 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHH-HHHH
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHH-HHHH
Confidence                           0000110000  2589999999654   33455677889999999999998877766544 5444


Q ss_pred             HhhhccCCCCcEEEEEeCCCCCCCceecHH----------HHHHH----H-HH--------hCCcEEEEccC--------
Q 028329          112 IDLYSTNQDCIKLLVGNKVDKESERVVTKK----------EGINF----A-RE--------YGCLFIECSAK--------  160 (210)
Q Consensus       112 ~~~~~~~~~~piivv~nK~D~~~~~~~~~~----------~~~~~----~-~~--------~~~~~~~~sa~--------  160 (210)
                      +..    .+.|+++|+||+|+........+          .....    . ..        ...+++++||+        
T Consensus       226 l~~----~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~  301 (695)
T 2j69_A          226 IKG----RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK  301 (695)
T ss_dssp             TTT----SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred             HHh----hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence            432    36789999999998543311110          11111    1 11        12368999999        


Q ss_pred             ------CCCCHHHHHHHHHHHHHcCC
Q 028329          161 ------TRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       161 ------~~~~i~~~~~~l~~~~~~~~  180 (210)
                            ++.|++++++++.+.+.+..
T Consensus       302 ~~~~~~~~~Gi~~L~~~L~~~l~~~~  327 (695)
T 2j69_A          302 NPQADLDGTGFPKFMDSLNTFLTRER  327 (695)
T ss_dssp             CTTCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred             CchhhhhccCHHHHHHHHHHHHHHhH
Confidence                  99999999999998776543

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.76  E-value=1.3e-17  Score=133.70  Aligned_cols=162  Identities=22%  Similarity=0.201  Sum_probs=107.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc----ccchh---hcccCc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF----RTLTS---SYYRGA   86 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~~~---~~~~~~   86 (210)
                      -.|+++|++|||||||+++|++.... ..++........-.+..++ ...+.+||+||....    ..+..   ..+..+
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            34789999999999999999976431 1222111111222233332 246889999996321    11212   234579


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCH
Q 028329           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNV  165 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  165 (210)
                      +.+++++|++ ...+..+.. |...+..+.. ....|.++++||+|+...  ...+.........+.+++.+||+++.|+
T Consensus       237 ~~lL~vvDls-~~~~~~ls~-g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi  312 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLET-LRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGL  312 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHHH-HHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred             HhhhEEeCCc-cCCHHHHHH-HHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCH
Confidence            9999999998 556666655 4444443321 124788999999998654  3334445555556789999999999999


Q ss_pred             HHHHHHHHHHHHcCCC
Q 028329          166 QQCFEELVLKILDTPS  181 (210)
Q Consensus       166 ~~~~~~l~~~~~~~~~  181 (210)
                      ++++++|.+.+.+...
T Consensus       313 ~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          313 PALKEALHALVRSTPP  328 (416)
T ss_dssp             HHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999999987654

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.76  E-value=8e-18  Score=143.28  Aligned_cols=120  Identities=17%  Similarity=0.228  Sum_probs=83.2

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCC--CCCC---------------CCCceeeeEEEEEEECCeEEEEEEEeCCC
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDN--FEEL---------------SPTIGVDFKVKYVDVGGKKLKLAIWDTAG   71 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~--~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (210)
                      .+.....+|+++|++|+|||||+++|+...  +...               ....+.+.......+......+.+|||||
T Consensus         7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG   86 (691)
T 1dar_A            7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPG   86 (691)
T ss_dssp             CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCS
T ss_pred             CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcC
Confidence            344678999999999999999999998321  1000               00112222211222222346799999999


Q ss_pred             ccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329           72 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~  134 (210)
                      +..+...+...++.+|++|+|+|+++..+...... |... ..    .++|+++++||+|+..
T Consensus        87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~-~~~~-~~----~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQA-EK----YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHH-HH----TTCCEEEEEECTTSTT
T ss_pred             ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHH-HHHH-HH----cCCCEEEEEECCCccc
Confidence            99998888899999999999999999887766554 5433 22    3789999999999854

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.75  E-value=7.3e-19  Score=136.00  Aligned_cols=164  Identities=20%  Similarity=0.245  Sum_probs=88.7

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcC-CCCCCC---------CCceeeeEEEEEEECCeEEEEEEEeCCCc-------cc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSD-NFEELS---------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQ-------ER   74 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------~~   74 (210)
                      ...++|+++|++|||||||+++|.+. .++..+         ++.............+....+.+||++|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            34589999999999999999998875 333221         11111111111222444578999999997       44


Q ss_pred             cccchh-------hccc-------------CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329           75 FRTLTS-------SYYR-------------GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        75 ~~~~~~-------~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~  134 (210)
                      +.....       .++.             .+++++|+.+.+. .++.....   ..++..  ...+++++|+||.|+..
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~---~~l~~l--~~~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV---AFMKAI--HNKVNIVPVIAKADTLT  169 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH---HHHHHH--TTTSCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH---HHHHHH--HhcCCEEEEEEeCCCCC
Confidence            444332       2222             2344555555432 12333322   223222  23578999999999975


Q ss_pred             Ccee--cHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028329          135 ERVV--TKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       135 ~~~~--~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~  182 (210)
                      .+.+  ..+++..++...+++++++||+++ +++++|.++.+.+.+..+.
T Consensus       170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~  218 (301)
T 2qnr_A          170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIPF  218 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCSE
T ss_pred             HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCCc
Confidence            4433  345778888889999999999999 9999999999999765543

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.75  E-value=7.2e-18  Score=131.36  Aligned_cols=166  Identities=17%  Similarity=0.179  Sum_probs=99.8

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-C----CCceeeeEEE--------------------------------
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-S----PTIGVDFKVK--------------------------------   53 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-~----~~~~~~~~~~--------------------------------   53 (210)
                      .....+|+|+|++|||||||+++|++..+... .    ..++......                                
T Consensus        21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
T 1jwy_B           21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE  100 (315)
T ss_dssp             TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence            34568999999999999999999998876211 1    1111000000                                


Q ss_pred             ---------------------EEE-ECCeEEEEEEEeCCCccc-------------cccchhhcccCccEEEEEEeCCCc
Q 028329           54 ---------------------YVD-VGGKKLKLAIWDTAGQER-------------FRTLTSSYYRGAQGIIMVYDVTRR   98 (210)
Q Consensus        54 ---------------------~~~-~~~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~   98 (210)
                                           .+. .......+.+|||||...             +......++..+|++++|+|..+.
T Consensus       101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~  180 (315)
T 1jwy_B          101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT  180 (315)
T ss_dssp             HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred             HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence                                 000 011124689999999643             344566678899999999997443


Q ss_pred             ccH-HHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccC---C---CCCHHHHHHH
Q 028329           99 DTF-TNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK---T---RVNVQQCFEE  171 (210)
Q Consensus        99 ~s~-~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~---~---~~~i~~~~~~  171 (210)
                      ... ..... +...+.    ..+.|+++|+||+|+........+.........+..++++++.   +   +.|+.++++.
T Consensus       181 ~~~~~~~~~-i~~~~~----~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~  255 (315)
T 1jwy_B          181 DLANSDALQ-LAKEVD----PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKS  255 (315)
T ss_dssp             CSTTCSHHH-HHHHHC----SSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHH
T ss_pred             chhhhHHHH-HHHHhC----CCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHH
Confidence            211 11111 333332    3578999999999996544322222211001122456666654   4   7899999999


Q ss_pred             HHHHHHcCCC
Q 028329          172 LVLKILDTPS  181 (210)
Q Consensus       172 l~~~~~~~~~  181 (210)
                      +...+.....
T Consensus       256 ~~~~~~~~~~  265 (315)
T 1jwy_B          256 EILYFKNHPI  265 (315)
T ss_dssp             HHHHHHTCTT
T ss_pred             HHHHHhCCCc
Confidence            9888866544

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.74  E-value=8.2e-18  Score=134.97  Aligned_cols=159  Identities=18%  Similarity=0.218  Sum_probs=83.2

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-C--------CCceeeeEEEEEEECCeEEEEEEEeCCCccccc-------
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-S--------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-------   76 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------   76 (210)
                      -.++|+|+|++|||||||+++|++..+... .        ++.........+...+....+++||++|.....       
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~  109 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ  109 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence            458899999999999999999998765311 1        111111111111223334578999999965431       


Q ss_pred             c------------------chhhcccCccEEEEEEeCCCc-ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce
Q 028329           77 T------------------LTSSYYRGAQGIIMVYDVTRR-DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV  137 (210)
Q Consensus        77 ~------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~  137 (210)
                      .                  ....++..+++.+++|+.... .++......|+..+.     ..+|+|+|+||+|+...+.
T Consensus       110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~~e  184 (418)
T 2qag_C          110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPEE  184 (418)
T ss_dssp             HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccHHH
Confidence            1                  112344555554455554432 344444333555553     3689999999999876555


Q ss_pred             ecH--HHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329          138 VTK--KEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       138 ~~~--~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                      +..  +.+...+...+++++++|++++.+++++|..+...+
T Consensus       185 v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred             HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence            543  567778888899999999999999998887776543

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.73  E-value=2.8e-18  Score=136.09  Aligned_cols=157  Identities=14%  Similarity=0.147  Sum_probs=101.6

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-Cce---eeeE-------------------------------------
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIG---VDFK-------------------------------------   51 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~---~~~~-------------------------------------   51 (210)
                      ...+|+|+|++|||||||+++|++..+..... ...   ....                                     
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            44599999999999999999999977632221 110   0000                                     


Q ss_pred             ------------EEEEEE-CCeEEEEEEEeCCCcccc-------------ccchhhcccCccEEEEEEeCCCcccHHHHH
Q 028329           52 ------------VKYVDV-GGKKLKLAIWDTAGQERF-------------RTLTSSYYRGAQGIIMVYDVTRRDTFTNLS  105 (210)
Q Consensus        52 ------------~~~~~~-~~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~  105 (210)
                                  ...+.+ ......+.+|||||...+             ......++.++|++++|+|..+....... 
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~-  191 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD-  191 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH-
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH-
Confidence                        000000 011235899999997665             45566778999999999987654433222 


Q ss_pred             HHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329          106 DVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus       106 ~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  173 (210)
                        |...+.. ....+.|+++|+||+|+........+....+...++.+|++++++.+.++++.+....
T Consensus       192 --~~~l~~~-~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~  256 (360)
T 3t34_A          192 --AIKISRE-VDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA  256 (360)
T ss_dssp             --HHHHHHH-SCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred             --HHHHHHH-hcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence              3444433 2345679999999999976554444333333344567899999999988887665543

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.73  E-value=2e-17  Score=140.82  Aligned_cols=119  Identities=14%  Similarity=0.187  Sum_probs=82.6

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhc--CCCCCC---CC------------CceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTS--DNFEEL---SP------------TIGVDFKVKYVDVGGKKLKLAIWDTAGQ   72 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~--~~~~~~---~~------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (210)
                      +.+...+|+++|++|+|||||+++|+.  +.+...   .+            ..+.+.......+......+.||||||+
T Consensus         6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~   85 (693)
T 2xex_A            6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH   85 (693)
T ss_dssp             CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence            345679999999999999999999984  222100   00            1122221111122222467999999999


Q ss_pred             cccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329           73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~  134 (210)
                      ..+...+...++.+|++|+|+|+++..+...... |.. +..    .++|+++|+||+|+..
T Consensus        86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~-~~~-~~~----~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETV-WRQ-ATT----YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHH-HHH----TTCCEEEEEECTTSTT
T ss_pred             cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHH-HHH-HHH----cCCCEEEEEECCCccc
Confidence            9998888889999999999999999877665544 443 332    3689999999999854

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.72  E-value=9.4e-17  Score=136.90  Aligned_cols=119  Identities=14%  Similarity=0.142  Sum_probs=83.1

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCC--CCCC------------CC---CceeeeEEE--EEEEC-----CeEEEEE
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDN--FEEL------------SP---TIGVDFKVK--YVDVG-----GKKLKLA   65 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~--~~~~------------~~---~~~~~~~~~--~~~~~-----~~~~~~~   65 (210)
                      +.++..+|+++|+.++|||||+++|+...  +...            .+   ..+.++...  .+.+.     +..+.+.
T Consensus         6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~   85 (704)
T 2rdo_7            6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN   85 (704)
T ss_pred             CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence            34567899999999999999999997431  1110            00   122222222  22222     2348899


Q ss_pred             EEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329           66 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~  134 (210)
                      ||||||+..+...+...++.+|++|+|+|+++......... |.. ..    ..++|+++++||+|+..
T Consensus        86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~-~~~-~~----~~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETV-WRQ-AN----KYKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHH-HHH-HH----HcCCCEEEEEeCCCccc
Confidence            99999999988888889999999999999998765544433 432 22    24689999999999853

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.72  E-value=5.3e-18  Score=135.62  Aligned_cols=84  Identities=29%  Similarity=0.352  Sum_probs=48.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC--CceeeeEEEEEE-------------------ECC-eEEEEEEEeCCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP--TIGVDFKVKYVD-------------------VGG-KKLKLAIWDTAG   71 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~--~~~~~~~~~~~~-------------------~~~-~~~~~~l~D~~g   71 (210)
                      ++|+++|.+|||||||+|+|++.... ..++  |...+.....+.                   +++ ....+.+||+||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999987621 1222  111112211111                   122 247899999999


Q ss_pred             ccc----cccchh---hcccCccEEEEEEeCCCc
Q 028329           72 QER----FRTLTS---SYYRGAQGIIMVYDVTRR   98 (210)
Q Consensus        72 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~   98 (210)
                      ...    ...+..   ..++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            743    222222   346899999999999875

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.71  E-value=4.2e-17  Score=129.86  Aligned_cols=123  Identities=19%  Similarity=0.143  Sum_probs=95.8

Q ss_pred             EEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCC----------cccHHHHHHHHHHHHhhhccCCCCcE
Q 028329           54 YVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLSDVWAKEIDLYSTNQDCIK  123 (210)
Q Consensus        54 ~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~pi  123 (210)
                      .+.+++  +.+.+||++|++.++..|..++++++++|+|||+++          .+++..+.. |+..+.......++|+
T Consensus       211 ~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~-~~~~i~~~~~~~~~pi  287 (402)
T 1azs_C          211 KFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALN-LFKSIWNNRWLRTISV  287 (402)
T ss_dssp             EEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHH-HHHHHHTCTTCSSCCE
T ss_pred             EeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHH-HHHHHHhcccCCCCeE
Confidence            344443  789999999999999999999999999999999999          889999988 6665554334567999


Q ss_pred             EEEEeCCCCCCCce---e---------------------------cHHHHHHHH-----HH--------hCCcEEEEccC
Q 028329          124 LLVGNKVDKESERV---V---------------------------TKKEGINFA-----RE--------YGCLFIECSAK  160 (210)
Q Consensus       124 ivv~nK~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~sa~  160 (210)
                      +||+||+|+...+.   .                           ..+++..++     ..        ..+.+++|||+
T Consensus       288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~  367 (402)
T 1azs_C          288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV  367 (402)
T ss_dssp             EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred             EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence            99999999843322   1                           134555553     21        24567899999


Q ss_pred             CCCCHHHHHHHHHHHHHcC
Q 028329          161 TRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~  179 (210)
                      ++.||+++|.++.+.+.+.
T Consensus       368 d~~nV~~vF~~v~~~I~~~  386 (402)
T 1azs_C          368 DTENIRRVFNDCRDIIQRM  386 (402)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHHHHHHH
Confidence            9999999999999888654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.69  E-value=2.9e-17  Score=127.14  Aligned_cols=132  Identities=18%  Similarity=0.165  Sum_probs=102.3

Q ss_pred             HHHHHHhcCCCC-CC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcc-cHHHHH
Q 028329           29 SLLLSFTSDNFE-EL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLS  105 (210)
Q Consensus        29 tli~~l~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~  105 (210)
                      +|+.+++.+.|. .. .|+.+..+. ..+..++   .+.+||+  ++.++.++..+++++|++++|||++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            688888888875 43 357774443 2222222   6899999  8889999999999999999999999987 676666


Q ss_pred             HHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcEEEEccCCCCCHHHHHHHHH
Q 028329          106 DVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG--CLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus       106 ~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~~l~  173 (210)
                      . |+..+..    .++|+++|+||+|+...+.+  +++..++..++  .+++++||+++.|++++|.++.
T Consensus       106 ~-~l~~~~~----~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          106 K-FLVLAEK----NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             H-HHHHHHH----TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             H-HHHHHHH----CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            5 7776654    47899999999999754432  44566677666  8999999999999999998764

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.66  E-value=8.9e-17  Score=127.17  Aligned_cols=105  Identities=11%  Similarity=0.096  Sum_probs=70.7

Q ss_pred             EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH
Q 028329           61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK  140 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~  140 (210)
                      .+.+.||||||...   .....+..+|++++|+|....+....+..          .-.+.|+++|+||+|+........
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~----------~~~~~p~ivVlNK~Dl~~~~~~~~  237 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK----------GVLELADIVVVNKADGEHHKEARL  237 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT----------TSGGGCSEEEEECCCGGGHHHHHH
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH----------hHhhcCCEEEEECCCCcChhHHHH
Confidence            35789999999432   23344588999999999877655433321          012358899999999854322211


Q ss_pred             --HHHHHHHHH-------hCCcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329          141 --KEGINFARE-------YGCLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       141 --~~~~~~~~~-------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~  178 (210)
                        .+.......       ++.+++.+||+++.|+++++++|.+.+..
T Consensus       238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence              111111111       25789999999999999999999988754

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.65  E-value=2.4e-16  Score=116.59  Aligned_cols=154  Identities=16%  Similarity=0.086  Sum_probs=94.6

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-C----cee----------eeEEEEEEE----------------CCeE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-T----IGV----------DFKVKYVDV----------------GGKK   61 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~----~~~----------~~~~~~~~~----------------~~~~   61 (210)
                      ...+|+++|.+|||||||+++|.......... .    .+.          ......+..                ....
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            45799999999999999999998653211100 0    000          001111111                0123


Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH
Q 028329           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK  141 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~  141 (210)
                      ..+.+||++|......   .+....+.+++|+|+++....  ... +...       .+.|+++|+||+|+........+
T Consensus       109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~-~~~~-------~~~~~iiv~NK~Dl~~~~~~~~~  175 (221)
T 2wsm_A          109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEK-HPEI-------FRVADLIVINKVALAEAVGADVE  175 (221)
T ss_dssp             CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHH-CHHH-------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhh-hhhh-------hhcCCEEEEecccCCcchhhHHH
Confidence            5688999988411110   111256889999998875421  111 1111       13678999999998543223445


Q ss_pred             HHHHHHHHh--CCcEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329          142 EGINFAREY--GCLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       142 ~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      +....+...  +++++++||+++.|++++|++|.+.+.+.
T Consensus       176 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          176 KMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            555555554  46899999999999999999999887554

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.64  E-value=5.7e-18  Score=125.78  Aligned_cols=153  Identities=20%  Similarity=0.188  Sum_probs=89.6

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeE------------EEEEEEC-Ce------------------
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFK------------VKYVDVG-GK------------------   60 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~------------~~~~~~~-~~------------------   60 (210)
                      ..++|+++|++|||||||+++|+...+...+. +.+.++.            ...+.++ +.                  
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            46899999999999999999999765543222 2222221            1111111 10                  


Q ss_pred             -EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec
Q 028329           61 -KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT  139 (210)
Q Consensus        61 -~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~  139 (210)
                       ...+.++|++|.-....   .+-...+..+.++|..........   +...       ...|.++|+||+|+.......
T Consensus       117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~~---~~~~-------~~~~~iiv~NK~Dl~~~~~~~  183 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIEK---HPGI-------MKTADLIVINKIDLADAVGAD  183 (226)
T ss_dssp             GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTTT---CHHH-------HTTCSEEEEECGGGHHHHTCC
T ss_pred             CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHhh---hhhH-------hhcCCEEEEeccccCchhHHH
Confidence             01344555555211100   011123455666664322211110   1111       136779999999986443345


Q ss_pred             HHHHHHHHHHh--CCcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329          140 KKEGINFAREY--GCLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       140 ~~~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      .+++..++...  +++++++||+++.|++++|+++.+.+.+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          184 IKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            55666666654  5789999999999999999999988754

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.63  E-value=2e-17  Score=130.88  Aligned_cols=158  Identities=21%  Similarity=0.161  Sum_probs=92.6

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-----CCcee----------------------eeE-------------
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-----PTIGV----------------------DFK-------------   51 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-----~~~~~----------------------~~~-------------   51 (210)
                      ...++|+|+|.+|||||||+++|++..+....     ..++.                      ++.             
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            45689999999999999999999988764211     11220                      000             


Q ss_pred             ----------EEEEEEC-CeEEEEEEEeCCCccc-------------cccchhhcccCc-cEEEEEEeCCCcccHHHHHH
Q 028329           52 ----------VKYVDVG-GKKLKLAIWDTAGQER-------------FRTLTSSYYRGA-QGIIMVYDVTRRDTFTNLSD  106 (210)
Q Consensus        52 ----------~~~~~~~-~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~  106 (210)
                                ...+.+. .....+.||||||...             +......++..+ +++++|.|++....-.....
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~  188 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  188 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence                      0001111 1135699999999532             333455556555 55566667665322211111


Q ss_pred             HHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH--HHHHhC-CcEEEEccCCCCCHHHHHHHHHH
Q 028329          107 VWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN--FAREYG-CLFIECSAKTRVNVQQCFEELVL  174 (210)
Q Consensus       107 ~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~--~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~  174 (210)
                       +...+    ...+.|+++|+||+|+.............  +....+ ..++.+||+++.|++++++++.+
T Consensus       189 -i~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 -VAKEV----DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             -HHHHH----CTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             -HHHHh----CcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence             22322    23578999999999996543311111110  000123 24788999999999999999876

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.63  E-value=1.5e-15  Score=126.11  Aligned_cols=118  Identities=14%  Similarity=0.131  Sum_probs=82.9

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcC---------------------CCCCCCCCceeeeEEEEEEECCeEEEEEEEeC
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSD---------------------NFEELSPTIGVDFKVKYVDVGGKKLKLAIWDT   69 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~   69 (210)
                      ..+.-+|+|+|+.++|||||..+|+..                     ++.......+.++....+.+......++|+||
T Consensus        28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDT  107 (548)
T 3vqt_A           28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDT  107 (548)
T ss_dssp             HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECC
T ss_pred             ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeC
Confidence            346789999999999999999999521                     11111113333443333333344577999999


Q ss_pred             CCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329           70 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        70 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~  134 (210)
                      ||+..|.......++-+|++|+|+|+...-....... |....+     .++|.++++||+|.+.
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v-~~~a~~-----~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKL-MDVCRM-----RATPVMTFVNKMDREA  166 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHH-HHHHHH-----TTCCEEEEEECTTSCC
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHH-HHHHHH-----hCCceEEEEecccchh
Confidence            9999999999999999999999999998765555443 544333     4799999999999853

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.62  E-value=1.4e-14  Score=113.92  Aligned_cols=143  Identities=21%  Similarity=0.197  Sum_probs=89.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC--CceeeeEEEEEEECCe---------------EEEEEEEeCCCccccc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP--TIGVDFKVKYVDVGGK---------------KLKLAIWDTAGQERFR   76 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~   76 (210)
                      ++|+++|.||||||||+++|++.... ..+|  |...+...  +.+.+.               ...+.+||+||.....
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~--v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGV--VPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSE--EECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEE--EecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            68999999999999999999987631 2222  22222222  233332               1579999999976543


Q ss_pred             ----cc---hhhcccCccEEEEEEeCCCc----------ccHHHHHHHHHHH----------------------------
Q 028329           77 ----TL---TSSYYRGAQGIIMVYDVTRR----------DTFTNLSDVWAKE----------------------------  111 (210)
Q Consensus        77 ----~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~----------------------------  111 (210)
                          .+   ....++.+|++++|+|+++.          +.+..+.. +...                            
T Consensus        81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~-i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~  159 (363)
T 1jal_A           81 SKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDT-INTELALADLDSCERAIQRLQKRAKGGDKEAK  159 (363)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             cccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHH-HHHHHHhhhHHHHhhHHHHHHHHhhccchhHH
Confidence                12   23347899999999999863          22222211 1111                            


Q ss_pred             ------------Hh-------------------hhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccC
Q 028329          112 ------------ID-------------------LYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK  160 (210)
Q Consensus       112 ------------~~-------------------~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  160 (210)
                                  +.                   .+......|+++++|+.|..-........+..++...+.+++++||+
T Consensus       160 ~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~  239 (363)
T 1jal_A          160 FELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA  239 (363)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             HHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence                        11                   01112358999999999864322334566777888889999999965

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.62  E-value=6e-16  Score=128.58  Aligned_cols=121  Identities=21%  Similarity=0.248  Sum_probs=81.3

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCC--CCCCCceeeeEEEEEEECCe-------E-------------------
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE--ELSPTIGVDFKVKYVDVGGK-------K-------------------   61 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~-------------------   61 (210)
                      .....++|+|+|.+|+|||||+|+|++..+.  ...+.+.++.... +..+..       .                   
T Consensus        61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~-i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~  139 (550)
T 2qpt_A           61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVA-VMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF  139 (550)
T ss_dssp             TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEE-EECCSSSEEECCC------------------CC
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEE-EEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence            3456799999999999999999999988764  2222222211111 100000       0                   


Q ss_pred             --------------EEEEEEeCCCccc-----------cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhc
Q 028329           62 --------------LKLAIWDTAGQER-----------FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS  116 (210)
Q Consensus        62 --------------~~~~l~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  116 (210)
                                    ..+.||||||...           +...+..++..+|++++|+|+++......... |+..+..  
T Consensus       140 ~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~-~l~~l~~--  216 (550)
T 2qpt_A          140 LNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSE-AIGALRG--  216 (550)
T ss_dssp             CTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHH-HHHHTTT--
T ss_pred             cccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHH-HHHHHHh--
Confidence                          2589999999764           33455667788999999999988654444444 5555443  


Q ss_pred             cCCCCcEEEEEeCCCCCCCc
Q 028329          117 TNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus       117 ~~~~~piivv~nK~D~~~~~  136 (210)
                        ...|+++|+||+|+....
T Consensus       217 --~~~pvilVlNK~Dl~~~~  234 (550)
T 2qpt_A          217 --HEDKIRVVLNKADMVETQ  234 (550)
T ss_dssp             --CGGGEEEEEECGGGSCHH
T ss_pred             --cCCCEEEEEECCCccCHH
Confidence              457899999999986543

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.60  E-value=1.1e-15  Score=132.60  Aligned_cols=117  Identities=20%  Similarity=0.270  Sum_probs=85.3

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCC------------CCCC-----CC--CceeeeEEEEEE------------ECC
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDN------------FEEL-----SP--TIGVDFKVKYVD------------VGG   59 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~------------~~~~-----~~--~~~~~~~~~~~~------------~~~   59 (210)
                      .....+|+|+|++++|||||+++|+...            +...     ..  +.........+.            .++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            3567899999999999999999998641            1100     00  111111122222            234


Q ss_pred             eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329           60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~  133 (210)
                      ....+.||||||+..|...+...++.+|++|+|+|+++..++..... |.....     .++|+++++||+|+.
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~~~~-----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQALG-----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHHHHH-----TTCEEEEEEECHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHHHH-----cCCCeEEEEECCCcc
Confidence            57899999999999999999999999999999999999888777654 544332     468999999999985

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.56  E-value=2e-14  Score=108.87  Aligned_cols=113  Identities=16%  Similarity=-0.001  Sum_probs=70.4

Q ss_pred             EEEEEEeCCCccccccchh------hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329           62 LKLAIWDTAGQERFRTLTS------SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~  135 (210)
                      +.+.+|||||.........      ..+.. +++++++|+....+.......+...... ....+.|+++|+||+|+...
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~iv~NK~D~~~~  186 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLI-DLRLGATTIPALNKVDLLSE  186 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH-HHHHTSCEEEEECCGGGCCH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHH-hcccCCCeEEEEeccccccc
Confidence            4799999999766543211      23455 8999999976544433332211111111 11235789999999998644


Q ss_pred             ceecHHHHHH----------------------------HHHHhC--CcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329          136 RVVTKKEGIN----------------------------FAREYG--CLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       136 ~~~~~~~~~~----------------------------~~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      ...  ++...                            ++...+  .+++++||+++.|+++++++|.+.+..
T Consensus       187 ~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          187 EEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             HHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            321  11111                            123333  479999999999999999999887753

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.54  E-value=4.2e-14  Score=111.80  Aligned_cols=150  Identities=18%  Similarity=0.134  Sum_probs=91.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCC-CCCCC--CceeeeEEEEEEECC-------------------eEEEEEEEeCCCc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNF-EELSP--TIGVDFKVKYVDVGG-------------------KKLKLAIWDTAGQ   72 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~-~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~l~D~~g~   72 (210)
                      ++|+++|.||||||||+++|++... ...++  |...+....  .+..                   ....+.+||+||.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            6899999999999999999997642 12222  222222221  2221                   2356999999997


Q ss_pred             ccccc-------chhhcccCccEEEEEEeCCCc----------ccHHHHHHHHHHH------------------------
Q 028329           73 ERFRT-------LTSSYYRGAQGIIMVYDVTRR----------DTFTNLSDVWAKE------------------------  111 (210)
Q Consensus        73 ~~~~~-------~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~------------------------  111 (210)
                      ....+       .....++.+|++++|+|+++.          +.+..+.. +...                        
T Consensus        80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~-i~~EL~~~d~~~l~k~~~~~~~~~~~~~  158 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEV-VETELLLADLATLERRLERLRKEARADR  158 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred             cccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHH-HhhHHHHccHHHHHHHHHHHHhhhccch
Confidence            65421       223347899999999999862          11211110 0000                        


Q ss_pred             ---------------Hhh-------------------hccCCCCcEEEEEeCCCCC--CC-ceecHHHHHHHHHHhCCcE
Q 028329          112 ---------------IDL-------------------YSTNQDCIKLLVGNKVDKE--SE-RVVTKKEGINFAREYGCLF  154 (210)
Q Consensus       112 ---------------~~~-------------------~~~~~~~piivv~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~  154 (210)
                                     +..                   +.....+|+++++|+.|..  .. +......+..++...+.++
T Consensus       159 ~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~v  238 (368)
T 2dby_A          159 ERLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEV  238 (368)
T ss_dssp             GGHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEE
T ss_pred             hHHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeE
Confidence                           000                   0001237999999999742  22 1345566788888889999


Q ss_pred             EEEccCCCCCHHH
Q 028329          155 IECSAKTRVNVQQ  167 (210)
Q Consensus       155 ~~~sa~~~~~i~~  167 (210)
                      +++||+...++.+
T Consensus       239 v~iSAk~E~el~e  251 (368)
T 2dby_A          239 VVVSARLEAELAE  251 (368)
T ss_dssp             EEECHHHHHHHHT
T ss_pred             EEeechhHHHHHH
Confidence            9999887444433

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.54  E-value=2.2e-14  Score=113.08  Aligned_cols=102  Identities=10%  Similarity=0.099  Sum_probs=61.8

Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH
Q 028329           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK  141 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~  141 (210)
                      +.+.++||+|....   .......+|++++|+|++.+.....+..    .+      .+.|.++|+||+|+....... .
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~----~i------l~~~~ivVlNK~Dl~~~~~~~-~  232 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR----GI------IEMADLVAVTKSDGDLIVPAR-R  232 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC----------------------CCSCSEEEECCCSGGGHHHHH-H
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH----HH------HhcCCEEEEeeecCCCchhHH-H
Confidence            46789999995321   2344678999999999987643221211    11      135779999999985321110 0


Q ss_pred             HHHHHHH----------HhCCcEEEEccCCCCCHHHHHHHHHHHHH
Q 028329          142 EGINFAR----------EYGCLFIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       142 ~~~~~~~----------~~~~~~~~~sa~~~~~i~~~~~~l~~~~~  177 (210)
                      ....+..          .+..+++.+||+++.|+++++++|.+.+.
T Consensus       233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          233 IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            1112211          12456899999999999999999988764

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.53  E-value=4.9e-14  Score=111.42  Aligned_cols=154  Identities=16%  Similarity=0.082  Sum_probs=91.0

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc-------cchhhcccC
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-------TLTSSYYRG   85 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~   85 (210)
                      ...+|.++|.||||||||+|+|++... .....+++|.......+.....++.++|+||...-.       ......++.
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~-~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTES-EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCC-CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCC-cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            457999999999999999999998653 333333444433333222233567888999953221       122345678


Q ss_pred             ccEEEEEEeCCCcccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCC--------CceecHHHHHHHHHHhCCcEEE
Q 028329           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKES--------ERVVTKKEGINFAREYGCLFIE  156 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~  156 (210)
                      +|++++|+|++++..-...   +...+... ......|.+++.||.|...        ......++...+.....+..-+
T Consensus       150 ad~il~vvD~~~p~~~~~~---i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kp  226 (376)
T 4a9a_A          150 CNLLFIILDVNKPLHHKQI---IEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAE  226 (376)
T ss_dssp             CSEEEEEEETTSHHHHHHH---HHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEE
T ss_pred             cCccccccccCccHHHHHH---HHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCC
Confidence            9999999999987443332   22222221 1123467789999999632        1233455556555555544333


Q ss_pred             EccCCCCCHHHHHH
Q 028329          157 CSAKTRVNVQQCFE  170 (210)
Q Consensus       157 ~sa~~~~~i~~~~~  170 (210)
                      +-...+.+.+++.+
T Consensus       227 v~~~~nv~eddl~d  240 (376)
T 4a9a_A          227 IAFRCDATVDDLID  240 (376)
T ss_dssp             EEECSCCCHHHHHH
T ss_pred             eeecccCCHHHHHH
Confidence            33344455555544

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.51  E-value=6.4e-15  Score=115.89  Aligned_cols=104  Identities=15%  Similarity=0.134  Sum_probs=65.4

Q ss_pred             EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH
Q 028329           61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK  140 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~  140 (210)
                      .+.+.||||||......   .....+|++++|+|++..+.+..+..    ..      .+.|.++|+||+|+........
T Consensus       148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~----~~------~~~p~ivv~NK~Dl~~~~~~~~  214 (341)
T 2p67_A          148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK----GL------MEVADLIVINKDDGDNHTNVAI  214 (341)
T ss_dssp             TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH----HH------HHHCSEEEECCCCTTCHHHHHH
T ss_pred             CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH----hh------hcccCEEEEECCCCCChHHHHH
Confidence            35799999999654332   24578999999999976543222111    00      1357899999999864322211


Q ss_pred             --HHHHHHHHHh-------CCcEEEEccCCCCCHHHHHHHHHHHHH
Q 028329          141 --KEGINFAREY-------GCLFIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       141 --~~~~~~~~~~-------~~~~~~~sa~~~~~i~~~~~~l~~~~~  177 (210)
                        ++........       ..+++++||+++.|+++++++|.+.+.
T Consensus       215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence              1222212221       346899999999999999999998764

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.50  E-value=9.7e-15  Score=123.42  Aligned_cols=113  Identities=14%  Similarity=0.154  Sum_probs=81.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCC--CC------------CCCC---CceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDN--FE------------ELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT   77 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~--~~------------~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   77 (210)
                      .+|.|+|+.++|||||..+|+...  ..            ...+   ..+.++....+.+......++|+||||+..|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            368999999999999999986211  10            0000   124445444455555667899999999999999


Q ss_pred             chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~  133 (210)
                      .....++-+|++|+|+|+...-....... |.....     .++|.++++||+|.+
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v-~~~a~~-----~~lp~i~~INKmDr~  132 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQTRIL-FHALRK-----MGIPTIFFINKIDQN  132 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHHHHH-HHHHHH-----HTCSCEECCEECCSS
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHHHHH-HHHHHH-----cCCCeEEEEeccccc
Confidence            99999999999999999987654433332 444333     368889999999974

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.49  E-value=6.8e-13  Score=113.53  Aligned_cols=123  Identities=13%  Similarity=0.131  Sum_probs=83.5

Q ss_pred             cccccccceEEEEEEEcCCCCcHHHHHHHHhcCC--------------CCC---CCCCceeeeEE--EEEEEC-----Ce
Q 028329            5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDN--------------FEE---LSPTIGVDFKV--KYVDVG-----GK   60 (210)
Q Consensus         5 ~~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~--------------~~~---~~~~~~~~~~~--~~~~~~-----~~   60 (210)
                      +....+.++.-+|+|+|+.++|||||..+|+...              +..   .....+.++..  ..+.+.     +.
T Consensus         4 m~~~~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~   83 (709)
T 4fn5_A            4 MARTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYD   83 (709)
T ss_dssp             --CCSCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSC
T ss_pred             CCCCCchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCC
Confidence            3444556778899999999999999999985211              111   11122333332  223332     23


Q ss_pred             EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329           61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~  133 (210)
                      .+.++|+||||+..|.......++-+|++|+|+|+...-......- |......     ++|.++++||+|.+
T Consensus        84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v-~~~a~~~-----~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETV-WRQANKY-----GVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHHHH-----TCCEEEEEECSSST
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHH-HHHHHHc-----CCCeEEEEcccccc
Confidence            6889999999999999999999999999999999998765444433 5554443     68999999999974

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.44  E-value=3.2e-13  Score=114.97  Aligned_cols=158  Identities=20%  Similarity=0.134  Sum_probs=96.2

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee-----------------------------------------
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF-----------------------------------------   50 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~-----------------------------------------   50 (210)
                      ....+|+|+|.+++|||||+|+|++..+......+.+.+                                         
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            456799999999999999999999877622111110000                                         


Q ss_pred             ---------E--EEEEEECCeEEEEEEEeCCCccc-------------cccchhhcc-cCccEEEEEEeCCCcccHHHHH
Q 028329           51 ---------K--VKYVDVGGKKLKLAIWDTAGQER-------------FRTLTSSYY-RGAQGIIMVYDVTRRDTFTNLS  105 (210)
Q Consensus        51 ---------~--~~~~~~~~~~~~~~l~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~  105 (210)
                               .  ...+... ....+.|+||||...             +......++ ..+|++++|+|++.........
T Consensus       129 ~g~~~~is~~~i~l~I~~P-~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l  207 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  207 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEET-TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred             cCCCCcccccceEEEEecC-CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence                     0  0011111 112478999999543             112223333 5789999999998764433332


Q ss_pred             HHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH--HHhC-CcEEEEccCCCCCHHHHHHHHHHH
Q 028329          106 DVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA--REYG-CLFIECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       106 ~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~--~~~~-~~~~~~sa~~~~~i~~~~~~l~~~  175 (210)
                      . +...+.    ..+.|+++|+||+|+...............  ...+ .+++.+||+++.|++++++.+...
T Consensus       208 ~-ll~~L~----~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          208 K-IAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             H-HHHHHC----TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             H-HHHHHH----hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            2 333333    346899999999999654433221111000  0112 247889999999999999998873

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.41  E-value=2.7e-13  Score=97.72  Aligned_cols=108  Identities=9%  Similarity=-0.039  Sum_probs=70.0

Q ss_pred             CCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHH---HHHHhhhccCCCCcEEEEEeCC-CCCCCceecHHHHH
Q 028329           69 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVW---AKEIDLYSTNQDCIKLLVGNKV-DKESERVVTKKEGI  144 (210)
Q Consensus        69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~~~piivv~nK~-D~~~~~~~~~~~~~  144 (210)
                      .+|+..++++|..++.++|++|||+|.+|.+.++ ....+   ...+.......++|++|++||. |++.  .....++.
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~  185 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA  185 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHH
Confidence            3478899999999999999999999999987665 33324   2222221112578999999995 6643  34444443


Q ss_pred             HHHHH----hCCcEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329          145 NFARE----YGCLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       145 ~~~~~----~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      +....    ....+..|||++|+|+.+.++||.+.+..+
T Consensus       186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence            33221    233489999999999999999998777544

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.40  E-value=1.3e-12  Score=100.98  Aligned_cols=97  Identities=20%  Similarity=0.164  Sum_probs=76.6

Q ss_pred             ccccccchhhcccCccEEEEEEeCCCcc-cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec-HHHHHHHHHH
Q 028329           72 QERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT-KKEGINFARE  149 (210)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~~~~  149 (210)
                      ++.+..+...++.++|++++|+|++++. ++..+.. |+..+..    .++|+++|+||+|+.....+. .++...++..
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~-~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~  140 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDN-MLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRD  140 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHH-HHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHH-HHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHH
Confidence            4566677778899999999999999986 7776665 7766654    578999999999996544222 3455666677


Q ss_pred             hCCcEEEEccCCCCCHHHHHHHHH
Q 028329          150 YGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus       150 ~~~~~~~~sa~~~~~i~~~~~~l~  173 (210)
                      .+++++++||+++.|++++++.+.
T Consensus       141 ~g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          141 AGYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             TTCEEEECCTTTCTTHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHhhcc
Confidence            789999999999999999987753

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.36  E-value=3.1e-13  Score=105.97  Aligned_cols=104  Identities=8%  Similarity=0.069  Sum_probs=62.9

Q ss_pred             EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH
Q 028329           61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK  140 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~  140 (210)
                      .+.+.|+||+|.....   ......+|.+++++|+...+....+..    .+.      +.+.++++||+|+........
T Consensus       147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~----~i~------~~~~ivvlNK~Dl~~~~~~s~  213 (337)
T 2qm8_A          147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK----GIF------ELADMIAVNKADDGDGERRAS  213 (337)
T ss_dssp             TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCT----THH------HHCSEEEEECCSTTCCHHHHH
T ss_pred             CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHH----HHh------ccccEEEEEchhccCchhHHH
Confidence            3568999999964322   233468999999999865432211111    000      235577789999743322222


Q ss_pred             HHHHHHHHH----------hCCcEEEEccCCCCCHHHHHHHHHHHHH
Q 028329          141 KEGINFARE----------YGCLFIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       141 ~~~~~~~~~----------~~~~~~~~sa~~~~~i~~~~~~l~~~~~  177 (210)
                      .....+...          +..+++.+|++++.|++++++.|.+.+.
T Consensus       214 ~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          214 AAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            222222221          1356889999999999999999988654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.29  E-value=4.1e-12  Score=95.89  Aligned_cols=109  Identities=9%  Similarity=-0.037  Sum_probs=74.9

Q ss_pred             CCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHH---HHHhhhccCCCCcEEEEEeC-CCCCCCceecHHHHH
Q 028329           69 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWA---KEIDLYSTNQDCIKLLVGNK-VDKESERVVTKKEGI  144 (210)
Q Consensus        69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~~~piivv~nK-~D~~~~~~~~~~~~~  144 (210)
                      .+|+..++++|..++.++|++|||+|.+|.+.++ ....+.   ..+.......++|++|++|| .|++.  .....++.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~  270 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA  270 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence            4678999999999999999999999999998765 333232   23322112357999999996 68753  33444433


Q ss_pred             HHHHH----hCCcEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028329          145 NFARE----YGCLFIECSAKTRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       145 ~~~~~----~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~  180 (210)
                      +....    ....+..|||.+|+|+.+.++||.+.+.+++
T Consensus       271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~  310 (312)
T 3l2o_B          271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR  310 (312)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred             HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence            33221    2234899999999999999999998875443

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.24  E-value=7e-11  Score=93.98  Aligned_cols=86  Identities=22%  Similarity=0.229  Sum_probs=57.6

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCC--CCCCceeeeEEEEEEECCe---------------EEEEEEEeCCCccc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE--LSPTIGVDFKVKYVDVGGK---------------KLKLAIWDTAGQER   74 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~   74 (210)
                      ....+|+++|++|||||||+|+|++.....  .+|........-.+.+.+.               ...+.+||+||...
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            446899999999999999999999866422  2332222222333444431               13588999999432


Q ss_pred             -------cccchhhcccCccEEEEEEeCCC
Q 028329           75 -------FRTLTSSYYRGAQGIIMVYDVTR   97 (210)
Q Consensus        75 -------~~~~~~~~~~~~d~~i~v~d~~~   97 (210)
                             +...+...++.+|++++|+|+.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                   22234455788999999999864

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.23  E-value=7.3e-12  Score=99.47  Aligned_cols=89  Identities=22%  Similarity=0.195  Sum_probs=50.8

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCe---------------EEEEEEEeCCCcccc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGK---------------KLKLAIWDTAGQERF   75 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~   75 (210)
                      ...++|+++|.+|||||||+++|++.... ..+|..+.+.....+.+.+.               ...+.+||+||....
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            45689999999999999999999987642 12222222222223333332               235999999997654


Q ss_pred             cc-------chhhcccCccEEEEEEeCCCccc
Q 028329           76 RT-------LTSSYYRGAQGIIMVYDVTRRDT  100 (210)
Q Consensus        76 ~~-------~~~~~~~~~d~~i~v~d~~~~~s  100 (210)
                      .+       .+...++.+|++++|+|+++.++
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence            43       45566889999999999986544

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.09  E-value=2.9e-11  Score=95.95  Aligned_cols=140  Identities=15%  Similarity=0.146  Sum_probs=84.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC-----CCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhh
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD-----NFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSS   81 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~   81 (210)
                      .+|+++|.+|+|||||+|+|++.     ........+++|.....+.+...   +.++||||.......        ...
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~  239 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLKI  239 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence            57999999999999999999975     23333334555665555555443   788999995432211        111


Q ss_pred             cc--cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEcc
Q 028329           82 YY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus        82 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  159 (210)
                      .+  ...+.++++++......+..+.  .   +. .....+.|+++++||.|........ .....+.+..+..+...++
T Consensus       240 ~~~~~~i~~~~~~l~~~~~~~~g~l~--~---l~-~l~~~~~~~~~v~~k~d~~~~~~~~-~~~~~~~~~~g~~l~p~~~  312 (369)
T 3ec1_A          240 ITPKREIHPRVYQLNEGQTLFFGGLA--R---LD-YIKGGRRSFVCYMANELTVHRTKLE-KADSLYANQLGELLSPPSK  312 (369)
T ss_dssp             HSCSSCCCCEEEEECTTEEEEETTTE--E---EE-EEESSSEEEEEEECTTSCEEEEEGG-GHHHHHHHHBTTTBCSSCG
T ss_pred             HhcccccCceEEEEcCCceEEECCEE--E---EE-EccCCCceEEEEecCCcccccccHH-HHHHHHHHhcCCccCCCCc
Confidence            11  5689999999985331111111  0   11 1234568999999999975443332 2334444556666555555


Q ss_pred             CCCCC
Q 028329          160 KTRVN  164 (210)
Q Consensus       160 ~~~~~  164 (210)
                      .+..+
T Consensus       313 ~~~~~  317 (369)
T 3ec1_A          313 RYAAE  317 (369)
T ss_dssp             GGTTT
T ss_pred             hhhhh
Confidence            54433

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.94  E-value=1.3e-10  Score=92.06  Aligned_cols=134  Identities=12%  Similarity=0.120  Sum_probs=77.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCC------CCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hh
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDN------FEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL--------TS   80 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~   80 (210)
                      .+|+++|.+|+|||||+|+|.+..      .......+++|.....+.+...   +.++||||.......        ..
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            579999999999999999998753      2223345566666666655443   788999995432211        11


Q ss_pred             hc--ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEc
Q 028329           81 SY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECS  158 (210)
Q Consensus        81 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (210)
                      ..  ....+.++++++......+..+.  .   + ......+.|+++++||.|....... ......+.+..+..++..+
T Consensus       238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~--~---~-d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~  310 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNEEQTLFFSGLA--R---F-DYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPT  310 (368)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTE--E---E-EEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSC
T ss_pred             HhccccccCceEEEEcCCCEEEEcceE--E---E-EEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCc
Confidence            11  35678899999875332111111  0   1 1123456899999999997543322 2222334444555444443

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.88  E-value=1.8e-09  Score=85.60  Aligned_cols=97  Identities=15%  Similarity=0.192  Sum_probs=71.4

Q ss_pred             CccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHH----HH
Q 028329           71 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGI----NF  146 (210)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~----~~  146 (210)
                      ..+.|.+++..+.+.+|++++|+|++++.      ..|...+..+.  .+.|+++|+||+|+..... ..+...    .+
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~-~~~~~~~~l~~~  125 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFV--GNNKVLLVGNKADLIPKSV-KHDKVKHWMRYS  125 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHS--SSSCEEEEEECGGGSCTTS-CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHh--CCCcEEEEEEChhcCCccc-CHHHHHHHHHHH
Confidence            35678888888888999999999999853      12555555443  3689999999999964432 222233    33


Q ss_pred             HHHhCC---cEEEEccCCCCCHHHHHHHHHHHH
Q 028329          147 AREYGC---LFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       147 ~~~~~~---~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                      +...+.   +++.+||+++.|++++++.+.+..
T Consensus       126 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          126 AKQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            556677   799999999999999999987755

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.88  E-value=1.4e-09  Score=87.09  Aligned_cols=139  Identities=21%  Similarity=0.243  Sum_probs=70.8

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCC---CCceeeeEEEEEEE--CCeEEEEEEEeCCCccccc------------
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS---PTIGVDFKVKYVDV--GGKKLKLAIWDTAGQERFR------------   76 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~l~D~~g~~~~~------------   76 (210)
                      .++++|+|++|+|||||++.|++..+....   ..++.+.....+..  .+....++++|++|.....            
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            467999999999999999999987542111   11222222222222  2223478899998743210            


Q ss_pred             --cch----hhc---------ccC--ccE-EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee
Q 028329           77 --TLT----SSY---------YRG--AQG-IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV  138 (210)
Q Consensus        77 --~~~----~~~---------~~~--~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~  138 (210)
                        ..+    ...         +..  +|+ ++++.|....-+...+ . +...+.     .++|+|+|.||+|.......
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-e-ilk~L~-----~~~~vI~Vi~KtD~Lt~~E~  194 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-V-TMKKLD-----SKVNIIPIIAKADAISKSEL  194 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-H-HHHHTC-----SCSEEEEEESCGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-H-HHHHHh-----hCCCEEEEEcchhccchHHH
Confidence              011    111         112  233 5556666544332221 1 233322     57899999999997544332


Q ss_pred             cH--HHHHHHHHHhCCcEEEEcc
Q 028329          139 TK--KEGINFAREYGCLFIECSA  159 (210)
Q Consensus       139 ~~--~~~~~~~~~~~~~~~~~sa  159 (210)
                      ..  ..+.......+++++.+|.
T Consensus       195 ~~l~~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          195 TKFKIKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             HHHHHHHHHHHBTTBCCCCCCC-
T ss_pred             HHHHHHHHHHHHHcCCcEEecCC
Confidence            11  1222222335677777764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.88  E-value=7.5e-09  Score=78.58  Aligned_cols=136  Identities=18%  Similarity=0.115  Sum_probs=71.9

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-------C-CceeeeEEEEEEECC--eEEEEEEEeCCCcccccc------
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-------P-TIGVDFKVKYVDVGG--KKLKLAIWDTAGQERFRT------   77 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-------~-~~~~~~~~~~~~~~~--~~~~~~l~D~~g~~~~~~------   77 (210)
                      .++++++|++|+|||||++.|++...+...       + ..........+....  ....++++|++|......      
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            489999999999999999999865432211       0 000001111111121  223678999987321100      


Q ss_pred             ----c--------h----------hhcccCccEEEEEEeCC-CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329           78 ----L--------T----------SSYYRGAQGIIMVYDVT-RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        78 ----~--------~----------~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~  134 (210)
                          .        .          ...+..+++.++++|.. .+-.-..  ......+..    . +++++|.+|.|...
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD--~~~l~~L~~----~-~~vI~Vi~K~D~lt  154 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD--LEFMKHLSK----V-VNIIPVIAKADTMT  154 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH--HHHHHHHHT----T-SEEEEEETTGGGSC
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH--HHHHHHHHh----c-CcEEEEEeccccCC
Confidence                0        0          01123468889999954 3322222  113333332    2 89999999999864


Q ss_pred             Ccee--cHHHHHHHHHHhCCcEEE
Q 028329          135 ERVV--TKKEGINFAREYGCLFIE  156 (210)
Q Consensus       135 ~~~~--~~~~~~~~~~~~~~~~~~  156 (210)
                      ....  ....+.......++.+|.
T Consensus       155 ~~e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          155 LEEKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHHHHcCccccC
Confidence            4332  122334445566776654

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.84  E-value=5.1e-09  Score=85.87  Aligned_cols=151  Identities=13%  Similarity=0.127  Sum_probs=84.3

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHh------cCCCC----C-CCCCc-----------eeeeEEEEEE-------------
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFT------SDNFE----E-LSPTI-----------GVDFKVKYVD-------------   56 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~------~~~~~----~-~~~~~-----------~~~~~~~~~~-------------   56 (210)
                      .....|+++|.+||||||+++.|.      +....    . ..+..           +..+......             
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            456789999999999999999997      32210    0 01100           0111100000             


Q ss_pred             ECCeEEEEEEEeCCCcccccc-chhh---c--ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcE-EEEEeC
Q 028329           57 VGGKKLKLAIWDTAGQERFRT-LTSS---Y--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK-LLVGNK  129 (210)
Q Consensus        57 ~~~~~~~~~l~D~~g~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pi-ivv~nK  129 (210)
                      .....+.+.|+||||...... ++..   .  +..+|.+++|+|+.......   . ....+..     .+|+ ++|+||
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~-~a~~~~~-----~~~i~gvVlNK  249 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---A-QAKAFKD-----KVDVASVIVTK  249 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---H-HHHHHHH-----HHCCCCEEEEC
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---H-HHHHHHh-----hcCceEEEEeC
Confidence            000235689999999654321 1111   1  22689999999998764321   1 1222222     1564 799999


Q ss_pred             CCCCCCceecHHHHHHHHHHhCCcE------------------EEEccCCCCC-HHHHHHHHHHH
Q 028329          130 VDKESERVVTKKEGINFAREYGCLF------------------IECSAKTRVN-VQQCFEELVLK  175 (210)
Q Consensus       130 ~D~~~~~~~~~~~~~~~~~~~~~~~------------------~~~sa~~~~~-i~~~~~~l~~~  175 (210)
                      .|......    .+.......+.|+                  +.+|+..|.| +.++++++.+.
T Consensus       250 ~D~~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          250 LDGHAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             TTSCCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             CccccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            99863321    1222334455543                  3367888888 98888887665

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.83  E-value=2.4e-08  Score=80.02  Aligned_cols=161  Identities=17%  Similarity=0.143  Sum_probs=86.5

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--Cceee--eEEEEEEECCeEEEEEEEeCCCccccccchhh-----cc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVD--FKVKYVDVGGKKLKLAIWDTAGQERFRTLTSS-----YY   83 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~-----~~   83 (210)
                      ....++++|++|||||||+|.|.+...+....  ..+..  ....... ......+.+||++|..........     .+
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L  146 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF  146 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence            34589999999999999999999754322111  11111  1111111 111124788999985322111111     13


Q ss_pred             cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC-------CCceec----HHHHHHHH----H
Q 028329           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE-------SERVVT----KKEGINFA----R  148 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~-------~~~~~~----~~~~~~~~----~  148 (210)
                      ...+..++ ++.....   ..+..+...+..    .+.|+++|.||.|+.       .-....    .+.+..+.    .
T Consensus       147 ~~~~~~~~-lS~G~~~---kqrv~la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~  218 (413)
T 1tq4_A          147 YEYDFFII-ISATRFK---KNDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR  218 (413)
T ss_dssp             GGCSEEEE-EESSCCC---HHHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CccCCeEE-eCCCCcc---HHHHHHHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            33455554 7765322   111112333332    357999999999862       111111    22223332    1


Q ss_pred             HhC---CcEEEEcc--CCCCCHHHHHHHHHHHHHcCCCc
Q 028329          149 EYG---CLFIECSA--KTRVNVQQCFEELVLKILDTPSL  182 (210)
Q Consensus       149 ~~~---~~~~~~sa--~~~~~i~~~~~~l~~~~~~~~~~  182 (210)
                      ..+   ..++.+|+  ..+.|++++.+.+.+.+.+.+..
T Consensus       219 ~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~  257 (413)
T 1tq4_A          219 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRH  257 (413)
T ss_dssp             HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHH
T ss_pred             hcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhh
Confidence            222   25788899  56667999999999888665533

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.79  E-value=4.5e-09  Score=80.33  Aligned_cols=59  Identities=29%  Similarity=0.450  Sum_probs=37.9

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE   73 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (210)
                      ...++|+++|.||||||||+|+|.+.......+.+++|.....+..+.   .+.+|||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            456899999999999999999999877666666666665544444433   47899999964

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.76  E-value=4.6e-09  Score=83.27  Aligned_cols=98  Identities=17%  Similarity=0.176  Sum_probs=70.1

Q ss_pred             CccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH----H
Q 028329           71 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN----F  146 (210)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~----~  146 (210)
                      .++.|.+++..++..++++++|+|++++++.      |...+..+.  .+.|+++|+||+|+..... ..+....    +
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s------~~~~l~~~l--~~~piilV~NK~DLl~~~~-~~~~~~~~l~~~  127 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNGS------FIPGLPRFA--ADNPILLVGNKADLLPRSV-KYPKLLRWMRRM  127 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGGG------CCSSHHHHC--TTSCEEEEEECGGGSCTTC-CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCCc------hhhHHHHHh--CCCCEEEEEEChhcCCCcc-CHHHHHHHHHHH
Confidence            4677888888888899999999999997641      333333332  3689999999999964432 2222233    3


Q ss_pred             HHHhCC---cEEEEccCCCCCHHHHHHHHHHHHH
Q 028329          147 AREYGC---LFIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       147 ~~~~~~---~~~~~sa~~~~~i~~~~~~l~~~~~  177 (210)
                      +...+.   .++.+||+++.|++++++.+.+...
T Consensus       128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~  161 (369)
T 3ec1_A          128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE  161 (369)
T ss_dssp             HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            455666   6899999999999999999877653

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.76  E-value=3e-09  Score=80.44  Aligned_cols=57  Identities=18%  Similarity=0.358  Sum_probs=37.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER   74 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (210)
                      ++++++|.+|+|||||+|+|.+.......++++++.....+..+.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            699999999999999999999877655556666665544444332   578999999654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.75  E-value=1.7e-08  Score=77.12  Aligned_cols=100  Identities=10%  Similarity=0.006  Sum_probs=69.0

Q ss_pred             eCCCcc-ccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHH
Q 028329           68 DTAGQE-RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINF  146 (210)
Q Consensus        68 D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~  146 (210)
                      .+||+. .........+..+|+++.|+|+.++.+.... . +...+      .++|.++|+||+|+....  ..+....+
T Consensus         5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~-~-l~~~l------~~kp~ilVlNK~DL~~~~--~~~~~~~~   74 (282)
T 1puj_A            5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP-M-IEDIL------KNKPRIMLLNKADKADAA--VTQQWKEH   74 (282)
T ss_dssp             ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH-H-HHHHC------SSSCEEEEEECGGGSCHH--HHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH-H-HHHHH------CCCCEEEEEECcccCCHH--HHHHHHHH
Confidence            578875 3444566678899999999999998776431 1 11111      468999999999997532  12223344


Q ss_pred             HHHhCCcEEEEccCCCCCHHHHHHHHHHHHH
Q 028329          147 AREYGCLFIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       147 ~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~  177 (210)
                      ....+++++.+||+++.|++++++.+.+.+.
T Consensus        75 ~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           75 FENQGIRSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             HHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             HHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence            4456789999999999999999998887765

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.48  E-value=3.7e-07  Score=73.57  Aligned_cols=86  Identities=19%  Similarity=0.132  Sum_probs=50.7

Q ss_pred             EEEEEEeCCCccccccchh------hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329           62 LKLAIWDTAGQERFRTLTS------SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~  135 (210)
                      +.+.|+||+|.........      .....+|.+++|+|+.........    ...+..   . -.+..||.||.|....
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~----a~~f~~---~-~~i~gVIlTKlD~~~~  254 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ----ALAFKE---A-TPIGSIIVTKLDGSAK  254 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHH---S-CTTEEEEEECCSSCSS
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH----HHHHHh---h-CCCeEEEEECCCCccc
Confidence            5688999999543222111      112357999999998865432222    122222   1 1344689999998533


Q ss_pred             ceecHHHHHHHHHHhCCcEEEEcc
Q 028329          136 RVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~sa  159 (210)
                      .    ..+.......+.|+.+++.
T Consensus       255 g----G~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          255 G----GGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             H----HHHHHHHHTTCCCEEEEEC
T ss_pred             c----cHHHHHHHHHCCCEEEEEc
Confidence            2    2344555667888877775

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.33  E-value=4e-07  Score=70.15  Aligned_cols=90  Identities=14%  Similarity=0.104  Sum_probs=62.1

Q ss_pred             cchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHHhCCcE
Q 028329           77 TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGINFAREYGCLF  154 (210)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~  154 (210)
                      .+.+..+.++|.+++|+|+.++..-......++....    ..++|.++|+||+|+.....  ...+.........+.++
T Consensus        78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~----~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v  153 (307)
T 1t9h_A           78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV  153 (307)
T ss_dssp             EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred             hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence            3445568899999999999987654444332333322    35688899999999976533  11234455556678899


Q ss_pred             EEEccCCCCCHHHHHH
Q 028329          155 IECSAKTRVNVQQCFE  170 (210)
Q Consensus       155 ~~~sa~~~~~i~~~~~  170 (210)
                      +.+|+.++.|++++++
T Consensus       154 ~~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          154 YLTSSKDQDSLADIIP  169 (307)
T ss_dssp             EECCHHHHTTCTTTGG
T ss_pred             EEEecCCCCCHHHHHh
Confidence            9999998888776554

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.32  E-value=3.6e-07  Score=68.99  Aligned_cols=93  Identities=16%  Similarity=0.107  Sum_probs=61.9

Q ss_pred             CCCccccc-cchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH
Q 028329           69 TAGQERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA  147 (210)
Q Consensus        69 ~~g~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~  147 (210)
                      .||+.... ......+.++|+++.|+|+.++.+.....      +. ..   ++|.++|+||+|+.....  .+....+.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~------l~-ll---~k~~iivlNK~DL~~~~~--~~~~~~~~   71 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG------VD-FS---RKETIILLNKVDIADEKT--TKKWVEFF   71 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT------SC-CT---TSEEEEEEECGGGSCHHH--HHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH------HH-hc---CCCcEEEEECccCCCHHH--HHHHHHHH
Confidence            46664332 35566788999999999999887654321      11 11   689999999999975321  22234445


Q ss_pred             HHhCCcEEEEccCCCCCHHHHHHHHHH
Q 028329          148 REYGCLFIECSAKTRVNVQQCFEELVL  174 (210)
Q Consensus       148 ~~~~~~~~~~sa~~~~~i~~~~~~l~~  174 (210)
                      ...+.++ .+||+++.|++++++.+..
T Consensus        72 ~~~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           72 KKQGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             HHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence            5667888 9999999999998877644

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.27  E-value=1.2e-06  Score=73.19  Aligned_cols=63  Identities=16%  Similarity=0.106  Sum_probs=40.2

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC-CceeeeEEEEE--EE-CCeEEEEEEEeCCCccc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP-TIGVDFKVKYV--DV-GGKKLKLAIWDTAGQER   74 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~-~~~~~~~~~~~--~~-~~~~~~~~l~D~~g~~~   74 (210)
                      ...++|+|+|.||||||||+|+|++.... .... +.+.+.....+  .+ ......+.++||||...
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            46789999999999999999999987632 2222 22222222211  11 12234688899999643

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.14  E-value=1.9e-06  Score=69.35  Aligned_cols=87  Identities=17%  Similarity=0.169  Sum_probs=51.5

Q ss_pred             EEEEEEEeCCCccc--cccc----hhhc--ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028329           61 KLKLAIWDTAGQER--FRTL----TSSY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK  132 (210)
Q Consensus        61 ~~~~~l~D~~g~~~--~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~  132 (210)
                      .+.+.++||||...  ....    ....  ....|.+++|+|+..........    ..+...    -.+..||.||.|.
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a----~~f~~~----~~~~gVIlTKlD~  250 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLA----SRFHQA----SPIGSVIITKMDG  250 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHH----HHHHHH----CSSEEEEEECGGG
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHH----HHHhcc----cCCcEEEEecccc
Confidence            35678899999544  2211    1111  12468999999988654332222    222221    1345799999997


Q ss_pred             CCCceecHHHHHHHHHHhCCcEEEEcc
Q 028329          133 ESERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~sa  159 (210)
                      ...    ...+.......+.|+.+++.
T Consensus       251 ~a~----~G~als~~~~~g~Pi~fig~  273 (433)
T 3kl4_A          251 TAK----GGGALSAVVATGATIKFIGT  273 (433)
T ss_dssp             CSC----HHHHHHHHHHHTCEEEEEEC
T ss_pred             ccc----chHHHHHHHHHCCCEEEEEC
Confidence            532    23455566677999877776

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.04  E-value=1.3e-05  Score=64.73  Aligned_cols=85  Identities=19%  Similarity=0.121  Sum_probs=48.8

Q ss_pred             EEEEEEEeCCCccccccch----h--hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCC-c-EEEEEeCCCC
Q 028329           61 KLKLAIWDTAGQERFRTLT----S--SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC-I-KLLVGNKVDK  132 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-p-iivv~nK~D~  132 (210)
                      .+.+.++||||........    .  ..+..+|.+++|+|+.....   ... ....+.     ... | ..+|.||.|.
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~-~~~~~~-----~~~~~i~gvVlnK~D~  250 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGI-QAKAFK-----EAVGEIGSIIVTKLDG  250 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHH-HHHHHH-----TTSCSCEEEEEECSSS
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHH-HHHHHh-----hcccCCeEEEEeCCCC
Confidence            3568899999965432111    1  11236899999999876532   222 112222     124 4 7899999997


Q ss_pred             CCCceecHHHHHHHHHHhCCcEEEEc
Q 028329          133 ESERVVTKKEGINFAREYGCLFIECS  158 (210)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (210)
                      ....    ..+..+....+.++..++
T Consensus       251 ~~~~----g~~l~~~~~~~~pi~~ig  272 (432)
T 2v3c_C          251 SAKG----GGALSAVAETKAPIKFIG  272 (432)
T ss_dssp             CSTT----HHHHHHHHHSSCCEEEEC
T ss_pred             ccch----HHHHHHHHHHCCCEEEee
Confidence            5321    123445666777766653

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.04  E-value=3.7e-06  Score=64.56  Aligned_cols=91  Identities=16%  Similarity=0.168  Sum_probs=53.3

Q ss_pred             EEEEEEEeCCCccc--ccc-chh-----hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCC
Q 028329           61 KLKLAIWDTAGQER--FRT-LTS-----SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVD  131 (210)
Q Consensus        61 ~~~~~l~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D  131 (210)
                      .+.+.++||||...  ... +..     ..+..+|.+++|+|+....   .... ....+..     ..+ ..+|.||.|
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~-~~~~~~~-----~~~i~gvVlnk~D  250 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYD-LASKFNQ-----ASKIGTIIITKMD  250 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHH-HHHHHHH-----TCTTEEEEEECGG
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHH-HHHHHHh-----hCCCCEEEEeCCC
Confidence            34688999999765  221 111     1234689999999986432   2222 1222221     244 578999999


Q ss_pred             CCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329          132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  166 (210)
                      ....    ...+..+....+.++..++  .|.+++
T Consensus       251 ~~~~----~g~~~~~~~~~~~pi~~i~--~Ge~v~  279 (297)
T 1j8m_F          251 GTAK----GGGALSAVAATGATIKFIG--TGEKID  279 (297)
T ss_dssp             GCTT----HHHHHHHHHTTTCCEEEEE--CSSSTT
T ss_pred             CCcc----hHHHHHHHHHHCcCEEEEe--CCCChh
Confidence            7432    2234566677788877766  344443

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.01  E-value=1.2e-05  Score=67.85  Aligned_cols=26  Identities=31%  Similarity=0.442  Sum_probs=21.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFE   40 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~   40 (210)
                      ..|+|+|++|||||||++.+.+-..+
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~~P   71 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVALP   71 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred             CeEEEECCCCChHHHHHHHHhCCCCC
Confidence            34999999999999999999986433

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.90  E-value=1.2e-05  Score=62.47  Aligned_cols=84  Identities=12%  Similarity=0.142  Sum_probs=46.8

Q ss_pred             EEEEEeCCCccccccchhh------cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329           63 KLAIWDTAGQERFRTLTSS------YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~  136 (210)
                      .+.++|++|..........      ..-..|-.++++|+....   .+.. ....+..   ..++ -++++||.|.... 
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~-~~~~~~~---~~~i-t~iilTKlD~~a~-  283 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVE-QARQFNE---AVKI-DGIILTKLDADAR-  283 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHH-HHHHHHH---HSCC-CEEEEECGGGCSC-
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHH-HHHHHHH---hcCC-CEEEEeCcCCccc-
Confidence            3567899986433221111      112468889999976543   2222 1222221   1222 3788999996322 


Q ss_pred             eecHHHHHHHHHHhCCcEEEEc
Q 028329          137 VVTKKEGINFAREYGCLFIECS  158 (210)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~s  158 (210)
                         ...+.......+.++..++
T Consensus       284 ---~G~~l~~~~~~~~pi~~i~  302 (328)
T 3e70_C          284 ---GGAALSISYVIDAPILFVG  302 (328)
T ss_dssp             ---CHHHHHHHHHHTCCEEEEE
T ss_pred             ---hhHHHHHHHHHCCCEEEEe
Confidence               2235566777888877777

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.89  E-value=3.9e-05  Score=60.25  Aligned_cols=86  Identities=17%  Similarity=0.179  Sum_probs=56.0

Q ss_pred             hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee-cHHHHHHHHHHhCCcEEEEcc
Q 028329           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-TKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~sa  159 (210)
                      ..+.++|.+++|.+. ++..-......++.....    .++|.+||+||+|+...... ..+.....+...|.+++.+|+
T Consensus       126 ~i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa  200 (358)
T 2rcn_A          126 PIAANIDQIVIVSAI-LPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSS  200 (358)
T ss_dssp             EEEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBT
T ss_pred             HHHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEec
Confidence            346889999988665 455433333323333222    35777999999999754321 122233444567889999999


Q ss_pred             CCCCCHHHHHHH
Q 028329          160 KTRVNVQQCFEE  171 (210)
Q Consensus       160 ~~~~~i~~~~~~  171 (210)
                      .++.|++++...
T Consensus       201 ~~~~gl~~L~~~  212 (358)
T 2rcn_A          201 HTQDGLKPLEEA  212 (358)
T ss_dssp             TTTBTHHHHHHH
T ss_pred             CCCcCHHHHHHh
Confidence            999999887653

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.88  E-value=4.7e-07  Score=74.05  Aligned_cols=101  Identities=15%  Similarity=0.069  Sum_probs=56.4

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc--cccch--------hh
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER--FRTLT--------SS   81 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~--------~~   81 (210)
                      ...+.|+++|.+||||||+.++|.........++.............+......+||..|...  ....+        ..
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            345789999999999999999997542211112221110000001111112345788887632  22222        44


Q ss_pred             cccCccEEEEEEeCCCcccHHHHHHHHHHHHhh
Q 028329           82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDL  114 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  114 (210)
                      ++...++.++|+|.++. +.+.... |...++.
T Consensus       117 ~l~~~~G~~vV~D~tn~-~~~~R~~-~~~~~~~  147 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT-TRERRAM-IFNFGEQ  147 (469)
T ss_dssp             HHHTTCCSEEEEESCCC-SHHHHHH-HHHHHHH
T ss_pred             HHHhCCCCEEEEeCCCC-CHHHHHH-HHHHHHh
Confidence            45567888999999987 4444444 6666554

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.76  E-value=4.8e-05  Score=61.48  Aligned_cols=25  Identities=20%  Similarity=0.134  Sum_probs=22.4

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ....-|.|+|++++|||||+|+|++
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhh
Confidence            4567899999999999999999985

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.54  E-value=4.8e-05  Score=53.90  Aligned_cols=22  Identities=32%  Similarity=0.726  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      +++++|++|||||||++.+.+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998754

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.45  E-value=6.5e-05  Score=54.01  Aligned_cols=32  Identities=31%  Similarity=0.413  Sum_probs=22.5

Q ss_pred             ccccccceEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329            6 ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus         6 ~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ....+....--|+|+|++|||||||++.|...
T Consensus        11 ~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           11 RENLYFQGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             -----CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cccCCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            33344444556889999999999999999854

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.44  E-value=0.00053  Score=55.33  Aligned_cols=84  Identities=15%  Similarity=0.088  Sum_probs=45.6

Q ss_pred             EEEEEEEeCCCcccccc-chh-----hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCC
Q 028329           61 KLKLAIWDTAGQERFRT-LTS-----SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKE  133 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~  133 (210)
                      .+.+.|+||||...... ...     ..+..++.+++|+|+......   .. ....+..     ..+ .-+|.||.|..
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~-~~~~f~~-----~l~i~gvVlnK~D~~  253 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---AN-TAKAFNE-----ALPLTGVVLTKVDGD  253 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HH-HHHHHHH-----HSCCCCEEEECTTSS
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HH-HHHHHhc-----cCCCeEEEEecCCCC
Confidence            35688999999654322 111     113368899999998754322   22 1122221     133 24799999974


Q ss_pred             CCceecHHHHHHHHHHhCCcEEEE
Q 028329          134 SERVVTKKEGINFAREYGCLFIEC  157 (210)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~  157 (210)
                      ...    ..+..+....+.++..+
T Consensus       254 ~~~----g~~l~i~~~~~~Pi~~i  273 (433)
T 2xxa_A          254 ARG----GAALSIRHITGKPIKFL  273 (433)
T ss_dssp             SCC----THHHHHHHHHCCCEEEE
T ss_pred             ccH----HHHHHHHHHHCCCeEEE
Confidence            322    13344555566664333

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.43  E-value=7.2e-05  Score=52.95  Aligned_cols=22  Identities=23%  Similarity=0.593  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .++++|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5889999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.40  E-value=8.1e-05  Score=53.58  Aligned_cols=22  Identities=36%  Similarity=0.622  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .++|+|++|||||||++.|.+.
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999763

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.38  E-value=0.00015  Score=56.89  Aligned_cols=24  Identities=42%  Similarity=0.475  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~   39 (210)
                      .++++|++|||||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            588999999999999999997654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.37  E-value=4.7e-05  Score=58.63  Aligned_cols=24  Identities=42%  Similarity=0.566  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      -.++++|++|||||||+|.|.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc
Confidence            478999999999999999998754

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.31  E-value=0.00012  Score=52.00  Aligned_cols=23  Identities=30%  Similarity=0.432  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -.|+++|++|||||||++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            45899999999999999999875

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.31  E-value=0.00012  Score=52.70  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -++++|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5889999999999999999864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.27  E-value=0.00059  Score=52.41  Aligned_cols=24  Identities=46%  Similarity=0.647  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~   39 (210)
                      -.++++|++|||||||+|.|. ...
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            357899999999999999999 543

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.27  E-value=0.00014  Score=52.71  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      =-++++|++|||||||++.+.+..
T Consensus        21 ei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           21 RVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            457899999999999999998653

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.26  E-value=0.00014  Score=51.05  Aligned_cols=20  Identities=35%  Similarity=0.554  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028329           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~   35 (210)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            57899999999999999754

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.26  E-value=0.00014  Score=53.21  Aligned_cols=24  Identities=29%  Similarity=0.404  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      --++|+|++|||||||++.|.+..
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            357899999999999999998653

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.24  E-value=0.0011  Score=53.38  Aligned_cols=86  Identities=19%  Similarity=0.205  Sum_probs=47.4

Q ss_pred             EEEEEEeCCCcccccc-chh-----hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329           62 LKLAIWDTAGQERFRT-LTS-----SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~  135 (210)
                      +.+.++||||...... ...     ...-.+|.+++|+|+....   .... ....+..   ..+ ..-||.||.|....
T Consensus       181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~-~a~~f~~---~l~-i~GVIlTKlD~~~~  252 (425)
T 2ffh_A          181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALS-VARAFDE---KVG-VTGLVLTKLDGDAR  252 (425)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHH-HHHHHHH---HTC-CCEEEEESGGGCSS
T ss_pred             CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHH-HHHHHHh---cCC-ceEEEEeCcCCccc
Confidence            4688999999654321 111     1122588899999986432   2222 1122221   112 24578899996432


Q ss_pred             ceecHHHHHHHHHHhCCcEEEEcc
Q 028329          136 RVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~sa  159 (210)
                      .    ..+..+....+.++.++..
T Consensus       253 ~----g~alsi~~~~g~PI~flg~  272 (425)
T 2ffh_A          253 G----GAALSARHVTGKPIYFAGV  272 (425)
T ss_dssp             C----HHHHHHHHHHCCCEEEEEC
T ss_pred             H----HHHHHHHHHHCCCEEEEeC
Confidence            1    2345566677888666553

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.23  E-value=0.00016  Score=52.92  Aligned_cols=24  Identities=33%  Similarity=0.660  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      -.++|+|++|||||||++.|.+..
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            358899999999999999998743

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.18  E-value=0.00017  Score=52.16  Aligned_cols=26  Identities=23%  Similarity=0.239  Sum_probs=22.2

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .....|+|+|++|||||||++.|.+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999998754

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.18  E-value=0.0002  Score=52.96  Aligned_cols=23  Identities=30%  Similarity=0.418  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999999754

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.17  E-value=0.00021  Score=49.54  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      =.++++|+.|+|||||++.+.+..
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            358899999999999999998754

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.17  E-value=0.00023  Score=50.71  Aligned_cols=21  Identities=38%  Similarity=0.684  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~   37 (210)
                      |+|+|++|||||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999743

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.16  E-value=0.00021  Score=51.76  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      -|+++|++|||||||++.|....
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHST
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            58899999999999999998653

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.13  E-value=0.00024  Score=52.19  Aligned_cols=23  Identities=39%  Similarity=0.489  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.10  E-value=0.00027  Score=49.38  Aligned_cols=23  Identities=22%  Similarity=0.481  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ..|+++|++||||||+++.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999999753

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.09  E-value=0.00029  Score=50.98  Aligned_cols=25  Identities=20%  Similarity=0.351  Sum_probs=21.3

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ....|+++|++|||||||++.|.+.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998753

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.09  E-value=0.00029  Score=52.29  Aligned_cols=23  Identities=26%  Similarity=0.378  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.08  E-value=0.0003  Score=50.68  Aligned_cols=23  Identities=39%  Similarity=0.583  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .-|+|+|++|||||||++.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            45889999999999999999753

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.07  E-value=0.00028  Score=50.10  Aligned_cols=21  Identities=29%  Similarity=0.504  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .++++|++|||||||++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.07  E-value=0.00028  Score=50.71  Aligned_cols=24  Identities=29%  Similarity=0.493  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      ..|+++|++||||||+++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            468999999999999999998654

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.07  E-value=0.00031  Score=51.20  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999999753

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.07  E-value=0.00031  Score=48.87  Aligned_cols=19  Identities=32%  Similarity=0.482  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 028329           16 KLLMIGDSGVGKSSLLLSF   34 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l   34 (210)
                      .|++.|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5889999999999999999

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.06  E-value=0.00031  Score=52.87  Aligned_cols=23  Identities=35%  Similarity=0.485  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999754

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.06  E-value=0.00034  Score=51.83  Aligned_cols=23  Identities=35%  Similarity=0.577  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+..
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998653

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.06  E-value=0.00033  Score=50.30  Aligned_cols=28  Identities=18%  Similarity=0.399  Sum_probs=22.8

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ........|+|.|.+||||||+.+.|..
T Consensus        15 ~~~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           15 VPRGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             -CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3445567899999999999999999864

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.05  E-value=0.00032  Score=53.19  Aligned_cols=23  Identities=35%  Similarity=0.560  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999999754

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.04  E-value=0.00038  Score=51.71  Aligned_cols=21  Identities=19%  Similarity=0.545  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHh
Q 028329           15 FKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~   35 (210)
                      -.|+|+|++|||||||++.|.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999998

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.04  E-value=0.00033  Score=50.35  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -.|+++|++||||||+++.|.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.03  E-value=0.00038  Score=51.75  Aligned_cols=23  Identities=26%  Similarity=0.314  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998754

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.03  E-value=0.00042  Score=48.55  Aligned_cols=22  Identities=36%  Similarity=0.475  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..|++.|.+||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.03  E-value=0.00038  Score=51.93  Aligned_cols=23  Identities=30%  Similarity=0.339  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998754

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.03  E-value=0.00034  Score=52.47  Aligned_cols=23  Identities=39%  Similarity=0.473  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999754

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.02  E-value=0.00038  Score=48.40  Aligned_cols=21  Identities=14%  Similarity=0.205  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .|++.|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.02  E-value=0.00036  Score=52.64  Aligned_cols=23  Identities=39%  Similarity=0.515  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999999754

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.01  E-value=0.00037  Score=52.49  Aligned_cols=23  Identities=35%  Similarity=0.521  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            47899999999999999999753

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.01  E-value=0.00041  Score=51.08  Aligned_cols=23  Identities=35%  Similarity=0.583  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+..
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999754

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.00  E-value=0.00034  Score=49.97  Aligned_cols=22  Identities=27%  Similarity=0.564  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4789999999999999988753

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.00  E-value=0.00038  Score=51.66  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999754

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.00  E-value=0.00039  Score=52.14  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999754

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.99  E-value=0.00044  Score=51.60  Aligned_cols=23  Identities=35%  Similarity=0.574  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999999754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.97  E-value=0.00042  Score=51.76  Aligned_cols=22  Identities=32%  Similarity=0.469  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .++++|++|||||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999975

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.97  E-value=0.00046  Score=51.87  Aligned_cols=22  Identities=23%  Similarity=0.360  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .++++|++|||||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5789999999999999999975

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.97  E-value=0.00044  Score=48.50  Aligned_cols=21  Identities=29%  Similarity=0.520  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -|++.|.+||||||+.+.|..
T Consensus         5 ~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999975

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.96  E-value=0.00034  Score=49.33  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -.++++|++|+|||||++.+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988754

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.96  E-value=0.00047  Score=52.37  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+..
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998754

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.96  E-value=0.00048  Score=48.19  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -.|+++|++||||||+++.|.+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999999864

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.95  E-value=0.00048  Score=52.10  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++|+|++|||||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999754

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.95  E-value=0.0005  Score=51.85  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .++++|++|||||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999975

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.94  E-value=0.00045  Score=50.12  Aligned_cols=21  Identities=19%  Similarity=0.434  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      +|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999853

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.94  E-value=0.00054  Score=49.16  Aligned_cols=23  Identities=26%  Similarity=0.587  Sum_probs=20.2

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .-.|+++|++||||||+.+.|..
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            34799999999999999999864

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.94  E-value=0.00045  Score=53.06  Aligned_cols=23  Identities=35%  Similarity=0.265  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      =.++|+|++|+|||||++.|.+-
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhhh
Confidence            36899999999999999999864

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.92  E-value=0.00046  Score=49.57  Aligned_cols=22  Identities=32%  Similarity=0.407  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..|+|+|.+||||||+++.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999864

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.92  E-value=0.00062  Score=49.02  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      +.|+++|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999999976

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.92  E-value=0.00059  Score=52.39  Aligned_cols=25  Identities=44%  Similarity=0.348  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFE   40 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~   40 (210)
                      .++++|++|||||||++.|.+...+
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~~  195 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLKL  195 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred             eEEEECCCCCcHHHHHHHhcccccc
Confidence            5789999999999999999976543

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.92  E-value=0.00048  Score=49.98  Aligned_cols=21  Identities=24%  Similarity=0.406  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      +|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999853

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.92  E-value=0.00065  Score=48.74  Aligned_cols=26  Identities=19%  Similarity=0.354  Sum_probs=22.0

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ......|+|.|.+||||||+.+.|..
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34557899999999999999998863

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.92  E-value=0.00034  Score=50.77  Aligned_cols=22  Identities=23%  Similarity=0.409  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .++++|++|||||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.91  E-value=0.00055  Score=51.24  Aligned_cols=23  Identities=35%  Similarity=0.494  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999754

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.91  E-value=0.00046  Score=51.86  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      =.++++|++|||||||++.+.+.
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHHh
Confidence            36899999999999999998753

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.90  E-value=0.00055  Score=51.59  Aligned_cols=23  Identities=39%  Similarity=0.498  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999998754

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.90  E-value=0.0005  Score=49.41  Aligned_cols=22  Identities=27%  Similarity=0.481  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .+|+++|.+||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999986

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.89  E-value=0.00054  Score=48.24  Aligned_cols=23  Identities=30%  Similarity=0.322  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ..++++|++|||||||+++|...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            46889999999999999999854

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.89  E-value=0.00059  Score=51.36  Aligned_cols=23  Identities=30%  Similarity=0.596  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+..
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999764

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.88  E-value=0.00052  Score=49.27  Aligned_cols=24  Identities=29%  Similarity=0.310  Sum_probs=20.7

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ...|+++|++||||||+++.|.+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999988753

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.88  E-value=0.00065  Score=52.44  Aligned_cols=27  Identities=22%  Similarity=0.171  Sum_probs=23.3

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .....-|+|+|++|||||||++.|.+.
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence            455678999999999999999998864

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.88  E-value=0.00065  Score=48.13  Aligned_cols=22  Identities=32%  Similarity=0.392  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..|+|.|.+||||||+++.|..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999864

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.87  E-value=0.00059  Score=49.43  Aligned_cols=21  Identities=24%  Similarity=0.483  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      +|+++|+|||||+|...+|..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999863

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.87  E-value=0.00076  Score=48.61  Aligned_cols=27  Identities=19%  Similarity=0.217  Sum_probs=23.0

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ......|+++|++||||||+++.|...
T Consensus        18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           18 GSKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            345578999999999999999999864

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.86  E-value=0.00034  Score=51.44  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=15.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHh-cC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFT-SD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~-~~   37 (210)
                      --++|+|++|||||||++.|. +.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            358899999999999999999 64

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.85  E-value=0.00063  Score=49.67  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..|+++|++||||||+++.|..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.85  E-value=0.00085  Score=47.33  Aligned_cols=23  Identities=17%  Similarity=0.349  Sum_probs=20.2

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ...|++.|.+||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999863

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.83  E-value=0.00062  Score=49.58  Aligned_cols=23  Identities=22%  Similarity=0.518  Sum_probs=20.4

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ...|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.83  E-value=0.00058  Score=49.85  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -++++|++|||||||++.+.+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999864

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.82  E-value=0.00035  Score=49.06  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .+.|+|++|||||||++.|.+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999999864

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.81  E-value=0.00075  Score=47.63  Aligned_cols=22  Identities=27%  Similarity=0.422  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999863

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.81  E-value=0.00082  Score=49.89  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=21.5

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ...+|++.|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999999999863

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.81  E-value=0.00079  Score=48.14  Aligned_cols=21  Identities=29%  Similarity=0.578  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .|++.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999999874

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.80  E-value=0.0008  Score=47.70  Aligned_cols=23  Identities=17%  Similarity=0.379  Sum_probs=20.2

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ...|++.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.79  E-value=0.00068  Score=53.26  Aligned_cols=24  Identities=38%  Similarity=0.570  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~   39 (210)
                      -++++|++|||||||++.+.+-..
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCC
Confidence            468999999999999999997643

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.78  E-value=0.00084  Score=47.47  Aligned_cols=22  Identities=18%  Similarity=0.200  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..|+|.|.+||||||+++.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999864

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.78  E-value=0.00055  Score=52.65  Aligned_cols=23  Identities=35%  Similarity=0.483  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++|+|++|||||||++.+.+-.
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCchHHHHHHHHHcCC
Confidence            58899999999999999998653

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.77  E-value=0.00066  Score=53.56  Aligned_cols=25  Identities=20%  Similarity=0.260  Sum_probs=22.2

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .-+++|+|++|||||||++.|.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998753

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.77  E-value=0.00079  Score=49.98  Aligned_cols=24  Identities=21%  Similarity=0.257  Sum_probs=21.3

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ....|+|+|++|||||||++.|.+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999875

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.77  E-value=0.00079  Score=51.41  Aligned_cols=23  Identities=35%  Similarity=0.583  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+..
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57899999999999999998753

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.76  E-value=0.00095  Score=47.31  Aligned_cols=23  Identities=17%  Similarity=0.413  Sum_probs=20.0

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ...|++.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998863

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.76  E-value=0.00072  Score=51.18  Aligned_cols=21  Identities=29%  Similarity=0.572  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.75  E-value=0.00079  Score=48.83  Aligned_cols=21  Identities=14%  Similarity=0.359  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      +|+|.|.+||||||+++.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.74  E-value=0.00078  Score=47.16  Aligned_cols=21  Identities=33%  Similarity=0.559  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      +|+++|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999999864

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=96.74  E-value=0.0025  Score=46.62  Aligned_cols=87  Identities=14%  Similarity=0.080  Sum_probs=45.2

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEE-eCCC-ccccc-----cchhhcccC
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIW-DTAG-QERFR-----TLTSSYYRG   85 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-D~~g-~~~~~-----~~~~~~~~~   85 (210)
                      ..+=|++-|.++.|||+|++++.+.......     ........-.+-...+-|| |.-. ...+.     .........
T Consensus        28 nkilvl~~~~~~~~~~~~~~~lf~~~~~~~~-----i~k~v~w~TKYYsa~V~IwVDe~~~l~~W~~EF~SdEA~EVR~v  102 (233)
T 3uc9_A           28 NKILVLSDHPHNFLKTQFLQDLFHCSSTGIS-----IVKDQTWENRYYKVHFDLYIDSCKDIPVWVEEFITPECEPLRNV  102 (233)
T ss_dssp             CEEEEEEEGGGHHHHHHHHHHHHCCCCCSSC-----EEEEEEEECSSCEEEEEEEEEEESCHHHHHHHHTSGGGHHHHHT
T ss_pred             CceEEEecCcccccHHHHHHHHhcccccccc-----cccCCeeeeceEEEEcceEEEecCCHHHHHHHhcCHHHHHHHHh
Confidence            3444555599999999999999977432211     1112222333334555555 5432 11111     111111223


Q ss_pred             ccEEEEEEeCCCcccHHHH
Q 028329           86 AQGIIMVYDVTRRDTFTNL  104 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~  104 (210)
                      .+++|+|++.......+.+
T Consensus       103 iggII~~f~~p~~~~~~~i  121 (233)
T 3uc9_A          103 MAGIILITDIRQTKPQELL  121 (233)
T ss_dssp             EEEEEEEECHHHHCGGGTH
T ss_pred             cceEEEEEeCCCcchHHHH
Confidence            4889999986655544433

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.73  E-value=0.00081  Score=52.77  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999999754

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.72  E-value=0.001  Score=51.49  Aligned_cols=26  Identities=19%  Similarity=0.213  Sum_probs=22.3

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ....+-|+|+|++|||||||++.|.+
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34568899999999999999998864

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.71  E-value=0.00087  Score=52.70  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            46899999999999999998754

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.70  E-value=0.0009  Score=52.68  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            46899999999999999998754

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.70  E-value=0.001  Score=47.09  Aligned_cols=24  Identities=25%  Similarity=0.501  Sum_probs=20.9

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ...|+++|.+||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            357999999999999999998754

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.70  E-value=0.00092  Score=52.61  Aligned_cols=23  Identities=35%  Similarity=0.405  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            46899999999999999999754

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.70  E-value=0.00091  Score=52.94  Aligned_cols=23  Identities=35%  Similarity=0.530  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            46899999999999999999754

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.69  E-value=0.00088  Score=49.05  Aligned_cols=22  Identities=27%  Similarity=0.594  Sum_probs=19.9

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHh
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~   35 (210)
                      ...|+|.|.+||||||+++.|.
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4679999999999999999886

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.68  E-value=0.0012  Score=47.55  Aligned_cols=22  Identities=27%  Similarity=0.274  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..|++.|.+||||||+++.|..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999999874

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.68  E-value=0.0009  Score=49.83  Aligned_cols=21  Identities=33%  Similarity=0.708  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ++++|++|+|||||++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999999864

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.68  E-value=0.001  Score=50.75  Aligned_cols=25  Identities=28%  Similarity=0.361  Sum_probs=21.5

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ....-|++.|++||||||+++.|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457799999999999999999964

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.67  E-value=0.0033  Score=42.50  Aligned_cols=23  Identities=13%  Similarity=0.304  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ..|++.|++|+|||++++.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            46999999999999999998754

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.66  E-value=0.00097  Score=52.71  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            46899999999999999999764

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.66  E-value=0.001  Score=52.62  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            46899999999999999998754

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.65  E-value=0.0012  Score=50.35  Aligned_cols=25  Identities=20%  Similarity=0.235  Sum_probs=21.6

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHh
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~   35 (210)
                      ......|+|+|++|||||||++.|.
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHH
Confidence            3456889999999999999998875

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.65  E-value=0.0012  Score=45.69  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      +|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.64  E-value=0.00058  Score=46.75  Aligned_cols=22  Identities=32%  Similarity=0.613  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .++++|++|+|||||++.+.+.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.64  E-value=0.0011  Score=46.29  Aligned_cols=23  Identities=17%  Similarity=0.342  Sum_probs=20.1

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ...+.++|.+|||||||+.+|..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999999875

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.64  E-value=0.0011  Score=46.63  Aligned_cols=23  Identities=39%  Similarity=0.613  Sum_probs=20.2

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ...|++.|.+||||||+.+.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            45689999999999999999873

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.63  E-value=0.0012  Score=50.78  Aligned_cols=26  Identities=19%  Similarity=0.245  Sum_probs=22.3

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .....|+|+|++|||||||++.|.+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            44578999999999999999999863

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.61  E-value=0.001  Score=52.32  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .++|+|++|||||||++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7899999999999999998753

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.61  E-value=0.0012  Score=48.63  Aligned_cols=24  Identities=17%  Similarity=0.347  Sum_probs=21.0

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ....|+|.|.+||||||+.+.|..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999863

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.61  E-value=0.00081  Score=52.65  Aligned_cols=23  Identities=22%  Similarity=0.437  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            47899999999999999999754

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.60  E-value=0.0014  Score=46.89  Aligned_cols=25  Identities=24%  Similarity=0.227  Sum_probs=22.1

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ....|+|.|.+||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4578999999999999999999864

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.60  E-value=0.00089  Score=48.82  Aligned_cols=23  Identities=17%  Similarity=0.302  Sum_probs=20.0

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ...|+|.|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998863

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.60  E-value=0.0013  Score=49.03  Aligned_cols=26  Identities=23%  Similarity=0.198  Sum_probs=21.4

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ....+.|+|.|.+||||||+.+.|..
T Consensus        19 ~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           19 GGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            34568899999999999999998864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.59  E-value=0.0011  Score=48.18  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.2

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ...|+|.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999999863

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.58  E-value=0.0013  Score=46.13  Aligned_cols=23  Identities=26%  Similarity=0.592  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -.+++.|++|+|||+|++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999988643

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.57  E-value=0.0013  Score=48.04  Aligned_cols=21  Identities=24%  Similarity=0.395  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .|+|.|.+||||||+++.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999863

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.56  E-value=0.0014  Score=46.99  Aligned_cols=25  Identities=24%  Similarity=0.154  Sum_probs=21.4

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .....|+++|++|||||||++.|.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.55  E-value=0.0018  Score=47.29  Aligned_cols=22  Identities=18%  Similarity=0.380  Sum_probs=18.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      --|+++|+|||||+|...+|..
T Consensus        30 kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           30 KVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3467789999999999998864

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.55  E-value=0.0012  Score=51.27  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+..
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999754

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.55  E-value=0.0019  Score=45.63  Aligned_cols=24  Identities=17%  Similarity=0.289  Sum_probs=20.9

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ....|++.|.+||||||+++.|..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            456789999999999999999864

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.55  E-value=0.0017  Score=45.88  Aligned_cols=22  Identities=18%  Similarity=0.383  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..|++.|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998863

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.53  E-value=0.0012  Score=50.65  Aligned_cols=85  Identities=14%  Similarity=0.096  Sum_probs=46.1

Q ss_pred             EEEEEeCCCcccccc------------chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028329           63 KLAIWDTAGQERFRT------------LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV  130 (210)
Q Consensus        63 ~~~l~D~~g~~~~~~------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~  130 (210)
                      .+.+.|++|......            ..+......+.+++++|+..........    ..+..   ..+. .++++||.
T Consensus       186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~----~~~~~---~~~~-t~iivTh~  257 (304)
T 1rj9_A          186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQA----KKFHE---AVGL-TGVIVTKL  257 (304)
T ss_dssp             SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHH----HHHHH---HHCC-SEEEEECT
T ss_pred             CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHH----HHHHH---HcCC-cEEEEECC
Confidence            356789998532221            1112334578888899977654332222    11211   1123 37889999


Q ss_pred             CCCCCceecHHHHHHHHHHhCCcEEEEcc
Q 028329          131 DKESERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       131 D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  159 (210)
                      |....    ...+.......+.++.++..
T Consensus       258 d~~a~----gg~~l~i~~~~~~pi~~ig~  282 (304)
T 1rj9_A          258 DGTAK----GGVLIPIVRTLKVPIKFVGV  282 (304)
T ss_dssp             TSSCC----CTTHHHHHHHHCCCEEEEEC
T ss_pred             ccccc----ccHHHHHHHHHCCCeEEEeC
Confidence            86422    22345566677888666653

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.53  E-value=0.0016  Score=46.29  Aligned_cols=23  Identities=17%  Similarity=0.332  Sum_probs=20.1

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ...|++.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998863

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.53  E-value=0.0014  Score=48.92  Aligned_cols=21  Identities=19%  Similarity=0.389  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999863

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.52  E-value=0.0013  Score=52.28  Aligned_cols=22  Identities=36%  Similarity=0.623  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .+.++|++|||||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4789999999999999999864

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.52  E-value=0.0016  Score=48.74  Aligned_cols=23  Identities=26%  Similarity=0.551  Sum_probs=20.2

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ...|++.|.+||||||+++.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999999874

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.51  E-value=0.0013  Score=51.23  Aligned_cols=22  Identities=32%  Similarity=0.629  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .++++|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999999864

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.51  E-value=0.0015  Score=45.40  Aligned_cols=21  Identities=19%  Similarity=0.482  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.51  E-value=0.0016  Score=48.54  Aligned_cols=21  Identities=29%  Similarity=0.389  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHh
Q 028329           15 FKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~   35 (210)
                      ..|+|+|++||||||+++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999997

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.51  E-value=0.001  Score=49.59  Aligned_cols=26  Identities=23%  Similarity=0.287  Sum_probs=22.1

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ......|+++|++||||||+.+.|..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34457899999999999999999864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.51  E-value=0.0013  Score=51.76  Aligned_cols=24  Identities=21%  Similarity=0.515  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      -.++|+|++|||||||++.|.+..
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            478999999999999999999643

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.50  E-value=0.0016  Score=46.52  Aligned_cols=23  Identities=13%  Similarity=0.213  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ..|+|.|.+||||||+++.|...
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            56999999999999999999854

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.50  E-value=0.0014  Score=49.59  Aligned_cols=21  Identities=33%  Similarity=0.708  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ++++|++|+|||||++.+.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            899999999999999999864

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.48  E-value=0.0014  Score=50.25  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=20.5

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..-.++++|++||||||+++.|.+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            345789999999999999998864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.48  E-value=0.00081  Score=52.80  Aligned_cols=23  Identities=22%  Similarity=0.496  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999999754

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.48  E-value=0.0018  Score=46.14  Aligned_cols=23  Identities=22%  Similarity=0.366  Sum_probs=20.3

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ...|++.|.+||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.47  E-value=0.0016  Score=45.88  Aligned_cols=21  Identities=29%  Similarity=0.485  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.47  E-value=0.00068  Score=48.97  Aligned_cols=21  Identities=24%  Similarity=0.450  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999864

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.46  E-value=0.0015  Score=51.64  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -.++|+|++||||||+++.+.+.
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999999753

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.44  E-value=0.0019  Score=45.76  Aligned_cols=21  Identities=19%  Similarity=0.249  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.44  E-value=0.0018  Score=46.64  Aligned_cols=23  Identities=17%  Similarity=0.023  Sum_probs=20.4

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ...|+|.|.+||||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999999864

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.43  E-value=0.0082  Score=48.49  Aligned_cols=63  Identities=24%  Similarity=0.273  Sum_probs=40.2

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHh-------c-----------CCCC---CCCC-CceeeeEEEEEEE---CCeEEEEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFT-------S-----------DNFE---ELSP-TIGVDFKVKYVDV---GGKKLKLAI   66 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~-------~-----------~~~~---~~~~-~~~~~~~~~~~~~---~~~~~~~~l   66 (210)
                      ....-|.|+|..++|||+|+|.|+       +           ..|.   ...+ |.|.......+.+   ++....+.+
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll  144 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL  144 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred             CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence            356777899999999999999554       1           1221   1112 5554443322222   667788999


Q ss_pred             EeCCCccc
Q 028329           67 WDTAGQER   74 (210)
Q Consensus        67 ~D~~g~~~   74 (210)
                      +||.|...
T Consensus       145 lDTEG~~d  152 (457)
T 4ido_A          145 MDTQGTFD  152 (457)
T ss_dssp             EEECCBTC
T ss_pred             EeccCCCC
Confidence            99999543

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.43  E-value=0.0016  Score=46.93  Aligned_cols=23  Identities=17%  Similarity=0.134  Sum_probs=20.4

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ...|+|.|.+||||||+++.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999874

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.43  E-value=0.0021  Score=46.65  Aligned_cols=23  Identities=26%  Similarity=0.499  Sum_probs=20.7

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .+.|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999975

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.41  E-value=0.001  Score=46.74  Aligned_cols=23  Identities=22%  Similarity=0.248  Sum_probs=16.2

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ...|++.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35699999999999999999863

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.41  E-value=0.0017  Score=47.30  Aligned_cols=22  Identities=27%  Similarity=0.576  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -++++|++|+|||||++.+.+.
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4788999999999999998743

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.40  E-value=0.0015  Score=48.05  Aligned_cols=26  Identities=31%  Similarity=0.502  Sum_probs=22.5

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ....-|+|.|..||||||+++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34567999999999999999999865

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.39  E-value=0.0018  Score=48.28  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ..+++.|++|+|||+|++.+.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            35999999999999999999753

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.39  E-value=0.0022  Score=44.44  Aligned_cols=22  Identities=41%  Similarity=0.475  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -.|++.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998853

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.39  E-value=0.0015  Score=53.19  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -.++|+|++|||||||++.|++-
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            46899999999999999999864

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.37  E-value=0.0017  Score=52.11  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .++|+|++|||||||++.+.+.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999864

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.37  E-value=0.0021  Score=45.15  Aligned_cols=22  Identities=23%  Similarity=0.495  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..|++.|.+||||||+++.|..
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999875

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.37  E-value=0.002  Score=45.23  Aligned_cols=21  Identities=24%  Similarity=0.286  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -.+|+|++|+|||||+..+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            467889999999999999864

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.36  E-value=0.0018  Score=53.32  Aligned_cols=23  Identities=17%  Similarity=0.320  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++|+|++||||||+++.+++.-
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48999999999999999998643

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.32  E-value=0.0035  Score=42.46  Aligned_cols=25  Identities=12%  Similarity=0.143  Sum_probs=21.5

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      ...|++.|++|+|||++++.+....
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            3568999999999999999998643

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.31  E-value=0.0018  Score=45.23  Aligned_cols=23  Identities=26%  Similarity=0.601  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -.+++.|++|+|||+|++.+...
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            45799999999999999888643

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.30  E-value=0.0022  Score=45.87  Aligned_cols=23  Identities=35%  Similarity=0.537  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -.+++.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999988753

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.29  E-value=0.0026  Score=48.24  Aligned_cols=24  Identities=38%  Similarity=0.437  Sum_probs=21.4

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHh
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~   35 (210)
                      ...+.|+|.|.+||||||+.+.|.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            346789999999999999999986

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.28  E-value=0.0023  Score=47.19  Aligned_cols=24  Identities=25%  Similarity=0.289  Sum_probs=20.6

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..+.|++.|++||||||+.+.|..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999999863

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.27  E-value=0.0023  Score=50.06  Aligned_cols=24  Identities=33%  Similarity=0.441  Sum_probs=21.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      =++.++|++|+|||||++.+.+..
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999999864

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.27  E-value=0.0027  Score=46.40  Aligned_cols=23  Identities=13%  Similarity=0.296  Sum_probs=20.2

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .-.+++.|++|+|||+|++.+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999998874

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.24  E-value=0.0022  Score=48.87  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -++|+|++|+|||||+..+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999998754

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.23  E-value=0.0023  Score=47.71  Aligned_cols=22  Identities=18%  Similarity=0.330  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -.|+++|++||||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998864

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.23  E-value=0.0024  Score=50.21  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=20.6

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..-.++++|++||||||+++.|.+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Confidence            445789999999999999998864

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.23  E-value=0.0016  Score=50.32  Aligned_cols=24  Identities=29%  Similarity=0.418  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      --++|+|+.|||||||++.|.+..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            356889999999999999999653

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.20  E-value=0.0021  Score=48.17  Aligned_cols=26  Identities=19%  Similarity=0.240  Sum_probs=21.6

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..+...|+|.|..||||||+++.|..
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999999874

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.19  E-value=0.0025  Score=52.05  Aligned_cols=24  Identities=33%  Similarity=0.584  Sum_probs=20.3

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..-.|+|+|.+|||||||++.|.+
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHH
Confidence            345788999999999999998864

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.18  E-value=0.0027  Score=46.62  Aligned_cols=22  Identities=18%  Similarity=0.283  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -++++|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999864

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.18  E-value=0.0028  Score=45.77  Aligned_cols=23  Identities=26%  Similarity=0.382  Sum_probs=20.0

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ...|++.|.+||||||+++.|..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999998864

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.17  E-value=0.0028  Score=45.83  Aligned_cols=21  Identities=24%  Similarity=0.221  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999987

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.15  E-value=0.0037  Score=44.61  Aligned_cols=24  Identities=21%  Similarity=0.270  Sum_probs=21.4

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ....|++.|.+||||||+.+.|..
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.12  E-value=0.0049  Score=51.14  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+..
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999999754

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.12  E-value=0.0032  Score=48.05  Aligned_cols=22  Identities=36%  Similarity=0.475  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..|++.|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.11  E-value=0.0034  Score=46.14  Aligned_cols=25  Identities=16%  Similarity=0.222  Sum_probs=21.3

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ...-|++.|.+||||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4467899999999999999998753

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.10  E-value=0.003  Score=48.09  Aligned_cols=24  Identities=29%  Similarity=0.455  Sum_probs=21.1

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .-.+++.|++|+|||++++.+...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            457899999999999999999863

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.08  E-value=0.0032  Score=46.79  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=20.2

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ...|++.|++|+|||++++.+..
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            34589999999999999999975

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.08  E-value=0.0031  Score=47.65  Aligned_cols=24  Identities=25%  Similarity=0.432  Sum_probs=20.9

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .-.+++.|++|+|||+|++.+...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            346999999999999999999754

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.06  E-value=0.004  Score=42.49  Aligned_cols=19  Identities=53%  Similarity=0.711  Sum_probs=16.7

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028329           17 LLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~   35 (210)
                      .+|+|+.|+|||||+..+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4678999999999998875

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.05  E-value=0.0032  Score=49.83  Aligned_cols=23  Identities=22%  Similarity=0.219  Sum_probs=20.3

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .-.++++|++|+|||||++.+.+
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            34688999999999999999985

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.04  E-value=0.0032  Score=51.36  Aligned_cols=22  Identities=27%  Similarity=0.542  Sum_probs=19.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      =.++|+|++|||||||++.+.+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhc
Confidence            3578999999999999999864

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.04  E-value=0.0029  Score=45.59  Aligned_cols=21  Identities=33%  Similarity=0.474  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .+++.|+||+|||+++.++..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999888864

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.03  E-value=0.0036  Score=47.75  Aligned_cols=25  Identities=24%  Similarity=0.110  Sum_probs=20.7

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .+.-+++.|+||+|||+|++.+...
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456778899999999999999754

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.02  E-value=0.0039  Score=44.77  Aligned_cols=21  Identities=29%  Similarity=0.596  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .+++.|++|+|||++++.+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            399999999999999998874

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.02  E-value=0.0036  Score=50.59  Aligned_cols=23  Identities=35%  Similarity=0.445  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      +++++|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999998764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.01  E-value=0.0046  Score=51.29  Aligned_cols=24  Identities=29%  Similarity=0.535  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~   39 (210)
                      -++++|++|||||||++.|.+...
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~~   50 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEII   50 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            478999999999999999997543

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.01  E-value=0.0034  Score=48.03  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -.|++.|++|+|||+|++.+...
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            45899999999999999999864

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.00  E-value=0.004  Score=45.30  Aligned_cols=21  Identities=33%  Similarity=0.529  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -++|.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998864

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.97  E-value=0.005  Score=51.61  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhcc
Confidence            68999999999999999998754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.94  E-value=0.0053  Score=51.70  Aligned_cols=24  Identities=29%  Similarity=0.477  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~   39 (210)
                      .++++|++|+|||||++.|.+...
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll~  128 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQK  128 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            588999999999999999987543

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.92  E-value=0.0059  Score=51.21  Aligned_cols=23  Identities=35%  Similarity=0.495  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999998754

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.91  E-value=0.004  Score=48.05  Aligned_cols=23  Identities=26%  Similarity=0.499  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -.+++.|++|+|||+|++.+...
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999998753

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.87  E-value=0.0072  Score=50.90  Aligned_cols=24  Identities=17%  Similarity=0.364  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~   39 (210)
                      .++++|++|+|||||++.+.+...
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll~  142 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQLI  142 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhCCCC
Confidence            578999999999999999987543

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.85  E-value=0.0056  Score=49.13  Aligned_cols=25  Identities=20%  Similarity=0.280  Sum_probs=21.0

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ...-|+++|.+||||||+.+.|...
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3456888999999999999999753

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.83  E-value=0.0053  Score=46.86  Aligned_cols=24  Identities=21%  Similarity=0.498  Sum_probs=19.9

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ....+++.|++|+|||++++.+..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999986653

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.83  E-value=0.0045  Score=46.74  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            578899999999999998874

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.83  E-value=0.0074  Score=45.32  Aligned_cols=26  Identities=23%  Similarity=0.379  Sum_probs=22.4

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .....+++.|++|+|||+|++.+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34568999999999999999999764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.80  E-value=0.0054  Score=50.88  Aligned_cols=24  Identities=17%  Similarity=0.387  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~   39 (210)
                      .++++|++|||||||++.+.+...
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999997543

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.80  E-value=0.0059  Score=44.85  Aligned_cols=23  Identities=22%  Similarity=0.473  Sum_probs=19.9

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..++.++|+|||||||+..+|..
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccceeeECCCCCCHHHHHHHHHH
Confidence            47899999999999999998853

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.79  E-value=0.0056  Score=50.81  Aligned_cols=24  Identities=17%  Similarity=0.404  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~   39 (210)
                      .++++|++|+|||||++.+.+...
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999999997643

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.77  E-value=0.0062  Score=43.54  Aligned_cols=21  Identities=29%  Similarity=0.302  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.75  E-value=0.0057  Score=46.58  Aligned_cols=24  Identities=33%  Similarity=0.516  Sum_probs=20.7

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ...+++.|++|+|||++++.+...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999998753

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.75  E-value=0.0059  Score=51.40  Aligned_cols=24  Identities=17%  Similarity=0.404  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~   39 (210)
                      .++++|++|+|||||++.|.+...
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999997643

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.74  E-value=0.0053  Score=49.38  Aligned_cols=24  Identities=25%  Similarity=0.432  Sum_probs=20.9

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      +--|++.|+||+|||+|++++.+.
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            345999999999999999999854

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.72  E-value=0.0055  Score=49.37  Aligned_cols=25  Identities=28%  Similarity=0.309  Sum_probs=21.8

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .+--|++.|+||+|||+|++++.+.
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHH
Confidence            3457999999999999999999864

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.71  E-value=0.006  Score=48.10  Aligned_cols=19  Identities=37%  Similarity=0.595  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028329           17 LLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~   35 (210)
                      .+|+|+.|||||||++.++
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4589999999999999886

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.70  E-value=0.0052  Score=51.49  Aligned_cols=23  Identities=30%  Similarity=0.359  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            67899999999999999988654

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.70  E-value=0.0045  Score=48.24  Aligned_cols=20  Identities=30%  Similarity=0.600  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028329           17 LLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~   36 (210)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998876

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.69  E-value=0.0063  Score=44.74  Aligned_cols=25  Identities=16%  Similarity=0.198  Sum_probs=21.4

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .....|+++|.+||||||+.+.|..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999998864

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.69  E-value=0.0056  Score=47.37  Aligned_cols=23  Identities=30%  Similarity=0.522  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -.|++.|+||+|||+|++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            56999999999999999999854

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.69  E-value=0.0057  Score=46.69  Aligned_cols=23  Identities=30%  Similarity=0.582  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -.+++.|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            47999999999999999998754

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.65  E-value=0.0066  Score=44.60  Aligned_cols=21  Identities=29%  Similarity=0.464  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999877653

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.65  E-value=0.0058  Score=47.52  Aligned_cols=22  Identities=32%  Similarity=0.688  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .+++.|++|+||||+++.+.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999998754

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.64  E-value=0.0061  Score=49.15  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=21.4

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      +--|++.|+||+|||+|++++.+.
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999999999864

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.64  E-value=0.0059  Score=47.88  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=20.6

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .-.++|.|++|+|||||++.+...
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998753

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.62  E-value=0.0067  Score=46.37  Aligned_cols=86  Identities=13%  Similarity=0.089  Sum_probs=47.3

Q ss_pred             EEEEEEEeCCCccccccc----hhhccc--CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329           61 KLKLAIWDTAGQERFRTL----TSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES  134 (210)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~  134 (210)
                      .+.+.++||+|.......    ....+.  ..+.+++|+|++..  ...+.. +...+.    ..+. .-+|.||.|...
T Consensus       182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~-~~~~~~----~l~~-~giVltk~D~~~  253 (296)
T 2px0_A          182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKH-IVKRFS----SVPV-NQYIFTKIDETT  253 (296)
T ss_dssp             GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHH-HTTTTS----SSCC-CEEEEECTTTCS
T ss_pred             CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHH-HHHHHh----cCCC-CEEEEeCCCccc
Confidence            346889999996543321    112222  36788999987743  222222 222221    1222 246679999753


Q ss_pred             CceecHHHHHHHHHHhCCcEEEEc
Q 028329          135 ERVVTKKEGINFAREYGCLFIECS  158 (210)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~s  158 (210)
                      .    ...+.......++++..++
T Consensus       254 ~----~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          254 S----LGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             C----CHHHHHHHHTCSCCCSEEC
T ss_pred             c----hhHHHHHHHHHCcCEEEEE
Confidence            2    2245666677788765544

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.61  E-value=0.006  Score=51.34  Aligned_cols=23  Identities=22%  Similarity=0.440  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            68999999999999999998654

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.61  E-value=0.0062  Score=47.03  Aligned_cols=24  Identities=29%  Similarity=0.465  Sum_probs=21.0

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ...|++.|+||+|||+|++.+...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            357999999999999999999754

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.59  E-value=0.0077  Score=42.46  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ++|+|.++||||+|...|...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999854

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.59  E-value=0.0052  Score=51.58  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            68899999999999999998653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.59  E-value=0.0068  Score=51.01  Aligned_cols=23  Identities=30%  Similarity=0.598  Sum_probs=20.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~~~   39 (210)
                      ++++|++|+|||||++.+.+...
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            78999999999999999997654

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.57  E-value=0.0067  Score=48.30  Aligned_cols=24  Identities=21%  Similarity=0.344  Sum_probs=21.2

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      +--|++.|+||+|||+|++.+.+.
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHh
Confidence            456999999999999999999864

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.52  E-value=0.0071  Score=47.58  Aligned_cols=22  Identities=23%  Similarity=0.376  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .++|.|++|+|||||++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998754

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.51  E-value=0.0077  Score=43.18  Aligned_cols=23  Identities=43%  Similarity=0.694  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ..|+|+|++|+|||+|+..|...
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            56899999999999999999854

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.50  E-value=0.0032  Score=47.13  Aligned_cols=21  Identities=29%  Similarity=0.566  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .+++.|++|+|||+|++.+..
T Consensus        46 ~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            388999999999999999875

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.48  E-value=0.0072  Score=47.32  Aligned_cols=23  Identities=22%  Similarity=0.273  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      --+.|+|++|+|||||+..++..
T Consensus       132 ~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          132 AITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999999865

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.47  E-value=0.0095  Score=46.60  Aligned_cols=22  Identities=23%  Similarity=0.496  Sum_probs=19.4

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHh
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~   35 (210)
                      ..+|+++|++|+||||+.+.|.
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la   45 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELC   45 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHH
Confidence            4679999999999999998765

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.46  E-value=0.008  Score=46.18  Aligned_cols=87  Identities=18%  Similarity=0.139  Sum_probs=47.8

Q ss_pred             EEEEEEeCCCccccccch-------hhc-----ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028329           62 LKLAIWDTAGQERFRTLT-------SSY-----YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK  129 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~-------~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK  129 (210)
                      +.+.++|+||........       ...     -...+.+++|+|+...  ...+.. . ..+..   ..++ .-+|.||
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a-~~~~~---~~~i-~gvVlTk  258 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-A-KIFKE---AVNV-TGIILTK  258 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-H-HHHHH---HSCC-CEEEEEC
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-H-HHHHh---cCCC-CEEEEeC
Confidence            357889999953322111       111     1247889999998632  122221 2 12221   1222 2577899


Q ss_pred             CCCCCCceecHHHHHHHHHHhCCcEEEEccC
Q 028329          130 VDKESERVVTKKEGINFAREYGCLFIECSAK  160 (210)
Q Consensus       130 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  160 (210)
                      .|....    ...+..+....+.|+.++..-
T Consensus       259 ~D~~~~----gG~~l~~~~~~~~Pi~~i~~G  285 (306)
T 1vma_A          259 LDGTAK----GGITLAIARELGIPIKFIGVG  285 (306)
T ss_dssp             GGGCSC----TTHHHHHHHHHCCCEEEEECS
T ss_pred             CCCccc----hHHHHHHHHHHCCCEEEEeCC
Confidence            996322    223667777889887776553

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.46  E-value=0.042  Score=39.03  Aligned_cols=86  Identities=12%  Similarity=-0.001  Sum_probs=54.4

Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecH
Q 028329           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTK  140 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~  140 (210)
                      +.+.++|+|+..  .......+..+|.+++++..+...  ..+.. +...+..... ..+.++.+|.|+.|...  . ..
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~-~~  147 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAG-SVVTVLEAQAYSRKVEARFLITRKIEMA--T-ML  147 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHH-HHHHHHTTSCGGGCCEEEEEECSBCTTE--E-EE
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHH-HHHHHHHHHHhCCCCcEEEEEeccCCCc--h-HH
Confidence            568899999865  334455667799999999987654  44444 5555543211 33567789999998532  1 22


Q ss_pred             HHHHHHHHHhCCcEE
Q 028329          141 KEGINFAREYGCLFI  155 (210)
Q Consensus       141 ~~~~~~~~~~~~~~~  155 (210)
                      .+........+.+++
T Consensus       148 ~~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          148 NVLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHHTCCBC
T ss_pred             HHHHHHHHHcCCcee
Confidence            344555556666554

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.45  E-value=0.0087  Score=46.24  Aligned_cols=22  Identities=18%  Similarity=0.539  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999874

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.44  E-value=0.0086  Score=46.60  Aligned_cols=22  Identities=23%  Similarity=0.594  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .-|+|.|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999998864

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.43  E-value=0.0079  Score=46.72  Aligned_cols=21  Identities=38%  Similarity=0.762  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~   37 (210)
                      +++.|++|+|||++++.+...
T Consensus        61 ~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988753

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.41  E-value=0.0097  Score=45.73  Aligned_cols=23  Identities=39%  Similarity=0.576  Sum_probs=20.2

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .-.+++.|++|+|||+|+..+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999988874

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.41  E-value=0.0083  Score=47.00  Aligned_cols=23  Identities=22%  Similarity=0.547  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -.+++.|++|+|||++++.+...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999998743

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.41  E-value=0.013  Score=43.70  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      ..|++.|++|+|||++++.+....
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhc
Confidence            568999999999999999998643

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.35  E-value=0.0095  Score=52.69  Aligned_cols=24  Identities=25%  Similarity=0.497  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~   39 (210)
                      .++++|++|+|||||++.+.++..
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            478999999999999999997643

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.34  E-value=0.0064  Score=50.58  Aligned_cols=25  Identities=32%  Similarity=0.479  Sum_probs=21.6

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ....|+|+|.+|||||||++.|.+.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHh
Confidence            3467999999999999999999754

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.33  E-value=0.011  Score=42.56  Aligned_cols=19  Identities=53%  Similarity=0.711  Sum_probs=16.2

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028329           17 LLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~   35 (210)
                      .+|+|+.|+|||||+..+.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            4677999999999998774

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.33  E-value=0.0096  Score=46.70  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -.|++.|++|+|||+|++.+...
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999999854

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.32  E-value=0.0084  Score=49.82  Aligned_cols=22  Identities=41%  Similarity=0.566  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .++++|++|+|||||++.+.+.
T Consensus       110 ~vll~Gp~GtGKTtlar~ia~~  131 (543)
T 3m6a_A          110 ILCLAGPPGVGKTSLAKSIAKS  131 (543)
T ss_dssp             EEEEESSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999998753

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.32  E-value=0.0086  Score=49.17  Aligned_cols=22  Identities=32%  Similarity=0.659  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -|+++|++|+|||+|++.+.+.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999999864

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.31  E-value=0.0087  Score=48.38  Aligned_cols=23  Identities=35%  Similarity=0.561  Sum_probs=20.0

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .-.+++.|++|+|||+|++.+.+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~  152 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGN  152 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999875

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.29  E-value=0.011  Score=41.35  Aligned_cols=23  Identities=30%  Similarity=0.622  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .-|++.|++|+||||+...|...
T Consensus        17 ~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            46899999999999999998864

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.29  E-value=0.0098  Score=46.06  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ..|++.|++|+|||+|++.+...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46899999999999999999654

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.28  E-value=0.01  Score=46.79  Aligned_cols=24  Identities=25%  Similarity=0.505  Sum_probs=20.9

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ...+++.|++|+|||++++.+...
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~   95 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKH   95 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHH
Confidence            356999999999999999998753

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.28  E-value=0.0088  Score=46.94  Aligned_cols=23  Identities=22%  Similarity=0.271  Sum_probs=20.3

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .-.++|.|++|+|||++++.+..
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999874

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.28  E-value=0.0095  Score=47.78  Aligned_cols=24  Identities=21%  Similarity=0.373  Sum_probs=21.3

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .--|++.|+||+|||+|++++.+.
T Consensus       216 prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          216 PKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCCceECCCCchHHHHHHHHHHH
Confidence            456999999999999999999864

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.27  E-value=0.0095  Score=48.62  Aligned_cols=22  Identities=27%  Similarity=0.595  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -|+++|+||+|||+|++.+.+.
T Consensus        51 gvLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           51 GILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999999863

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.27  E-value=0.0065  Score=53.73  Aligned_cols=23  Identities=35%  Similarity=0.642  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++|+|++|+|||||++.|.+..
T Consensus       701 ivaIiGpNGSGKSTLLklLaGll  723 (986)
T 2iw3_A          701 RIAVIGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             EEEECSCCCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999754

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.26  E-value=0.011  Score=46.49  Aligned_cols=24  Identities=29%  Similarity=0.440  Sum_probs=21.0

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ...|++.|+||+|||++++.+...
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999754

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.23  E-value=0.011  Score=46.42  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=21.0

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ...|++.|++|+|||+|++.+...
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999753

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.19  E-value=0.013  Score=43.08  Aligned_cols=22  Identities=32%  Similarity=0.452  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..|++-|..||||||+++.|..
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5689999999999999999874

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.17  E-value=0.01  Score=48.43  Aligned_cols=23  Identities=26%  Similarity=0.566  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -.++++|+||+|||++++.+...
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHH
Confidence            46799999999999999988643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	210
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	7e-54
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	5e-52
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	6e-50
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	9e-50
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	7e-49
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-48
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	8e-48
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-47
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-45
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	3e-45
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	7e-45
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	6e-41
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	2e-40
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	8e-39
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	6e-38
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	1e-37
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	3e-37
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	4e-36
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	6e-36
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	7e-36
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	8e-35
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	3e-34
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	7e-34
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	8e-34
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-33
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	8e-33
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-32
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	1e-32
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-32
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-32
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	4e-32
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-31
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-31
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	5e-31
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-30
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	2e-30
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	9e-30
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	2e-28
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	3e-28
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	4e-28
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	1e-27
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-27
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-27
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-27
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	7e-27
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	3e-26
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	3e-24
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	1e-23
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-23
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	3e-22
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	5e-22
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	3e-20
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	1e-18
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	3e-18
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	9e-17
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	2e-16
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	1e-08
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	2e-08
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	1e-07
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	3e-06
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	4e-06
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	3e-05
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	6e-05
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	6e-05
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	2e-04
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	3e-04
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	4e-04
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	7e-04

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  168 bits (425), Expect = 7e-54
 Identities = 78/170 (45%), Positives = 112/170 (65%), Gaps = 3/170 (1%)

Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIW 67
           + +DYLFKLL+IGDSGVGK+ +L  F+ D F      TIG+DFK++ +++ GK++KL IW
Sbjct: 1   KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 60

Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAGQERFRT+T++YYRGA GI++VYD+T   +F N+ +           + D  K+++G
Sbjct: 61  DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWI--RNIEEHASADVEKMILG 118

Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           NK D   +R V+K+ G   A +YG  F+E SAK  +NV+  F  L   I 
Sbjct: 119 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 168

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  163 bits (413), Expect = 5e-52
 Identities = 67/169 (39%), Positives = 105/169 (62%), Gaps = 3/169 (1%)

Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           ++D+LFK+++IG++GVGK+ L+  FT   F      TIGVDF +K V++ G+K+KL IWD
Sbjct: 1   DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 60

Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFR++T SYYR A  +I+ YD+T  ++F  L +           +   I +LVGN
Sbjct: 61  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWL--REIEQYASNKVITVLVGN 118

Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           K+D    R V+++    F+      ++E SAK   NV++ F +L  +++
Sbjct: 119 KIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 167

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  158 bits (399), Expect = 6e-50
 Identities = 87/166 (52%), Positives = 108/166 (65%), Gaps = 4/166 (2%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           + K+L+IGDSGVGKS LL+ F  D F      TIG+DFK+K VD+ GKK+KL IWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132
           ERFRT+T++YYRGA GII+VYD+T   TFTN+   +  +      N +   LLVGNK D 
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWF--KTVNEHANDEAQLLLVGNKSDM 119

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
           E  RVVT  +G   A+E G  FIE SAK   NV + F  L   I +
Sbjct: 120 E-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 164

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  158 bits (400), Expect = 9e-50
 Identities = 86/185 (46%), Positives = 113/185 (61%), Gaps = 3/185 (1%)

Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           E+DYLFKLL+IG+SGVGKS LLL F+ D +  +   TIGVDFK+K V++ GK +KL IWD
Sbjct: 2   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 61

Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128
           TAGQERFRT+TSSYYRG+ GII+VYDVT +++F  +     +           +KLLVGN
Sbjct: 62  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA--TSTVLKLLVGN 119

Query: 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSK 188
           K D + +RVV       FA      F+E SA    NV+  F  +  +I ++ S       
Sbjct: 120 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 179

Query: 189 GLKKN 193
             KK 
Sbjct: 180 TQKKE 184

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  155 bits (392), Expect = 7e-49
 Identities = 71/169 (42%), Positives = 107/169 (63%), Gaps = 4/169 (2%)

Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF--EELSPTIGVDFKVKYVDVGGKKLKLAIW 67
            +D  FK++++GDSGVGK+ LL+ F    F       T+G+DF+ K +DV G K+KL +W
Sbjct: 2   FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 61

Query: 68  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127
           DTAGQERFR++T +YYR A  ++++YDVT + +F N+     +  +      D   +L+G
Sbjct: 62  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA--QHDVALMLLG 119

Query: 128 NKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           NKVD   ERVV +++G   A+EYG  F+E SAKT +NV   F  +  ++
Sbjct: 120 NKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  155 bits (391), Expect = 1e-48
 Identities = 99/177 (55%), Positives = 118/177 (66%), Gaps = 5/177 (2%)

Query: 10  EFDYL--FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAI 66
           + D L   K+L+IG+SGVGKSSLLL FT D F  EL+ TIGVDFKVK + V G K KLAI
Sbjct: 1   DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 60

Query: 67  WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLV 126
           WDTAGQERFRTLT SYYRGAQG+I+VYDVTRRDTF  L +   +     + N      ++
Sbjct: 61  WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVN--ML 118

Query: 127 GNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL 183
                 +  R V + EG+ FAR++  LFIE SAKT   VQ  FEELV KI+ TP L 
Sbjct: 119 VGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLW 175

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  152 bits (385), Expect = 8e-48
 Identities = 78/169 (46%), Positives = 107/169 (63%), Gaps = 3/169 (1%)

Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDT 69
           FDY+FK+L+IG+S VGK+S L  +  D+F      T+G+DFKVK +    K++KL IWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61

Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQER+RT+T++YYRGA G I++YD+T  ++F  + D          +  +   LLVGNK
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWS--TQIKTYSWDNAQVLLVGNK 119

Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
            D E ERVV+ + G   A   G  F E SAK  +NV+Q FE LV  I +
Sbjct: 120 CDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  151 bits (383), Expect = 1e-47
 Identities = 84/167 (50%), Positives = 110/167 (65%), Gaps = 3/167 (1%)

Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDT 69
           + Y+FK ++IGD GVGKS LL  FT   F  +   TIGV+F  + ++V G+K+KL IWDT
Sbjct: 1   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60

Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQERFR +T SYYRGA G +MVYD+TRR T+ +LS       +   TN + + +L+GNK
Sbjct: 61  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN--LTNPNTVIILIGNK 118

Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            D E++R VT +E   FA E G LF+E SAKT  NV+  F E   KI
Sbjct: 119 ADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  147 bits (371), Expect = 2e-45
 Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 12/179 (6%)

Query: 10  EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGK-------- 60
           ++DYL KLL +GDSGVGK++ L  +T + F  +   T+G+DF+ K V    +        
Sbjct: 1   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 60

Query: 61  --KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTN 118
             K+ L +WDTAGQERFR+LT++++R A G ++++D+T + +F N+ +  ++        
Sbjct: 61  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 120

Query: 119 QDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
              I L +GNK D   +R V +++    A +YG  + E SA T  NV++  E L+  I+
Sbjct: 121 NPDIVL-IGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM 178

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  146 bits (368), Expect = 3e-45
 Identities = 78/169 (46%), Positives = 113/169 (66%), Gaps = 3/169 (1%)

Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDT 69
           +D+LFK L+IG++G GKS LL  F    F ++ + TIGV+F  K ++VGGK +KL IWDT
Sbjct: 2   YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 61

Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQERFR++T SYYRGA G ++VYD+T R+T+  L++       L   +Q+ + +L GNK
Sbjct: 62  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA--SQNIVIILCGNK 119

Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
            D +++R VT  E   FA+E   +F+E SA T  NV++ F +   KIL+
Sbjct: 120 KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 168

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (366), Expect = 7e-45
 Identities = 74/168 (44%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 11  FDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDT 69
           +DYLFK+++IGDSGVGKS+LL  FT + F  E   TIGV+F  + + V GK +K  IWDT
Sbjct: 1   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60

Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
           AGQER+R +TS+YYRGA G ++VYD+ +  T+ N+     KE+  ++ + + + +LVGNK
Sbjct: 61  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWL-KELRDHA-DSNIVIMLVGNK 118

Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
            D    R V   E   FA +    FIE SA    NV++ F+ ++ +I 
Sbjct: 119 SDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY 166

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (339), Expect = 6e-41
 Identities = 60/168 (35%), Positives = 99/168 (58%), Gaps = 3/168 (1%)

Query: 13  YLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71
           Y FK++++G+  VGK+SL+L +  + F ++   T+G  F  K +++GGK++ LAIWDTAG
Sbjct: 2   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61

Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           QERF  L   YYR + G I+VYD+T  D+F  + +   +         +    +VGNK+D
Sbjct: 62  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR--KMLGNEICLCIVGNKID 119

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDT 179
            E ER V+ +E  ++A   G      SAK    +++ F +L  ++++T
Sbjct: 120 LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 167

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (335), Expect = 2e-40
 Identities = 82/166 (49%), Positives = 116/166 (69%), Gaps = 3/166 (1%)

Query: 13  YLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71
           YLFK ++IGD+GVGKS LLL FT   F      TIGV+F  + V++ GK++KL IWDTAG
Sbjct: 2   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61

Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           QE FR++T SYYRGA G ++VYD+TRR+TF +L+    ++   +S++ + + +L+GNK D
Sbjct: 62  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWL-EDARQHSSS-NMVIMLIGNKSD 119

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
            ES R V ++EG  FARE+G +F+E SAKT  NV++ F     +I 
Sbjct: 120 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY 165

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 8e-39
 Identities = 62/163 (38%), Positives = 92/163 (56%), Gaps = 3/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+ +G+  VGK+SL+  F  D+F      TIG+DF  K + +  + ++L +WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFR+L  SY R +   ++VYD+T  ++F   +              D I +LVGNK D  
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRT--ERGSDVIIMLVGNKTDLA 118

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
            +R V+ +EG   A+E   +FIE SAK   NV+Q F  +   +
Sbjct: 119 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (319), Expect = 6e-38
 Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 1/163 (0%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           +K++++G  GVGKS+L + F +  F E       DF  K ++V      L I DTAG E+
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           F ++   Y +  QG I+VY +  + +F ++  +   +I      +    +LVGNKVD ES
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMR-DQIIRVKRYEKVPVILVGNKVDLES 122

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           ER V+  EG   A E+GC F+E SAK++  V + F E+V ++ 
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (316), Expect = 1e-37
 Identities = 63/164 (38%), Positives = 93/164 (56%), Gaps = 3/164 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++G+S VGKSSL+L F    F E    TIG  F  + V +    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           R+ +L   YYRGAQ  I+VYD+T  ++F    +    +      + + +  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWV--KELQRQASPNIVIALSGNKADLA 124

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           ++R V  +E  ++A +   LF+E SAKT +NV + F  +  K+ 
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  125 bits (314), Expect = 3e-37
 Identities = 58/164 (35%), Positives = 96/164 (58%), Gaps = 1/164 (0%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           L K++M+G  GVGKS+L L F  D F E       D   K V + G+++++ I DTAGQE
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 63

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  +  +Y+R  +G + V+ +T  ++F   +D + ++I     +++   LLVGNK D E
Sbjct: 64  DYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLE 122

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
            +R V+ +E  N A ++   ++E SAKTR NV + F +L+ +I 
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (308), Expect = 4e-36
 Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 15/179 (8%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            K +++GD  VGK+ LL+S+T++ F         D     V V GK + L +WDTAGQE 
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +  L    Y      ++ + +    +F N+   W  E+  +  N     +LVG K+D   
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN--TPIILVGTKLDLRD 123

Query: 135 ERVVTKK------------EGINFAREYG-CLFIECSAKTRVNVQQCFEELVLKILDTP 180
           ++   +K            +G+  A+E G   ++ECSA T+  ++  F+E +  +L  P
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (307), Expect = 6e-36
 Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 16/187 (8%)

Query: 7   SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAI 66
           +      + K +++GD  VGK+ LL+S+ +D F E       D     V VGGK+  L +
Sbjct: 2   AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGL 61

Query: 67  WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLV 126
           +DTAGQE +  L    Y      ++ + V    +F N+ + W  E+  Y    +   LL+
Sbjct: 62  YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLI 119

Query: 127 GNKVDKESERV------------VTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEELV 173
           G ++D   +              +  ++G   A+E G C ++ECSA T+  ++  F+E +
Sbjct: 120 GTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 179

Query: 174 LKILDTP 180
           + IL TP
Sbjct: 180 IAIL-TP 185

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 7e-36
 Identities = 63/172 (36%), Positives = 97/172 (56%), Gaps = 5/172 (2%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTA 70
             LFK++++GD GVGKSSL+  + ++ F  +L  TIGV+F  K ++V G  + + IWDTA
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63

Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC--IKLLVGN 128
           GQERFR+L + +YRG+   ++ + V    +F N    W KE   Y+  ++      ++  
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILG 122

Query: 129 KVDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEELVLKILDT 179
                SER V+ +E   + R+ G   + E SAK   NV   FEE V ++L T
Sbjct: 123 NKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 174

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (299), Expect = 8e-35
 Identities = 56/166 (33%), Positives = 78/166 (46%), Gaps = 1/166 (0%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71
               KL+++G  GVGKS+L + F    F         D   K   V G   +L I DTAG
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 63

Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           QE F  +   Y R   G ++V+ +  R +F N       +I       D   +LVGNK D
Sbjct: 64  QEEFGAMREQYMRAGHGFLLVFAINDRQSF-NEVGKLFTQILRVKDRDDFPVVLVGNKAD 122

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
            ES+R V + E   F   +   + E SAK R+NV + FE+LV  + 
Sbjct: 123 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 168

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 3e-34
 Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 2/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           +KL+++G  GVGKS+L +    ++F +       D   K V + G+   L I DTAGQE 
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +  +   Y R  +G + V+ +    +F +    + ++I     + D   +LVGNK D   
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFED-IHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
            R V  ++  + AR YG  +IE SAKTR  V+  F  LV +I 
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 7e-34
 Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 17/180 (9%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K +++GD  VGK+ LL+S+T++ F  E  PT+  D     V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
            +  L    Y      ++ + V    +F N+ + W  EI           LLVG ++D  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCPKTPFLLVGTQIDLR 120

Query: 134 SERVV------------TKKEGINFAREY-GCLFIECSAKTRVNVQQCFEELVLKILDTP 180
            +               T +     AR+     ++ECSA T+  ++  F+E +L  L+ P
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 180

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  116 bits (291), Expect = 8e-34
 Identities = 60/164 (36%), Positives = 87/164 (53%), Gaps = 6/164 (3%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           +FK+++IGDS VGK+ L   F +  F +    TIGVDF+ + VD+ G+++K+ +WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 73  ERFRTL-TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           ERFR      YYR    ++ VYD+T   +F +L     +E   +    D  ++LVGNK D
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWI-EECKQHLLANDIPRILVGNKCD 120

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTR---VNVQQCFEEL 172
             S   V       FA  +     E SAK      +V+  F  L
Sbjct: 121 LRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 3e-33
 Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 1/163 (0%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           ++L+++G  GVGKS+L + F    F         D   K   +  +  +L I DTAGQE 
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEE 65

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           F  +   Y R  +G ++V+ VT R +F  +   + ++I       +   +L+GNK D + 
Sbjct: 66  FGAMREQYMRTGEGFLLVFSVTDRGSFEEIYK-FQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           +R VT++EG   AR+    ++E SAK R+NV Q F ELV  I 
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  114 bits (285), Expect = 8e-33
 Identities = 70/165 (42%), Positives = 95/165 (57%), Gaps = 6/165 (3%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           KL+++G++ VGKSS++L F S++F E   PTIG  F  + V +    +K  IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD--- 131
           F +L   YYR AQ  ++VYDVT+  +F        +       ++D I  LVGNK+D   
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELH--EQASKDIIIALVGNKIDMLQ 122

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           +  ER V ++EG   A E G LF E SAKT  NV   F  +  KI
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  113 bits (284), Expect = 1e-32
 Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 2/164 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           +KL+++GD GVGKS+L + F    F         D  +K+ ++  +   L + DTAGQE 
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE 64

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           F  +   Y R   G ++VY VT + +F ++       + +       + +LV NKVD   
Sbjct: 65  FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM-ILVANKVDLMH 123

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTR-VNVQQCFEELVLKIL 177
            R VT+ +G   A +Y   +IE SAK   +NV + F +LV  I 
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 167

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 1e-32
 Identities = 63/163 (38%), Positives = 93/163 (57%), Gaps = 2/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           +KL+++G  GVGKS+L + F    F E       D   K V+V  ++  L I DTAG E+
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           F  +   Y +  QG  +VY +T + TF N      ++I      +D   +LVGNK D E 
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 135 ERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEELVLKI 176
           ERVV K++G N AR++  C F+E SAK+++NV + F +LV +I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  113 bits (282), Expect = 2e-32
 Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 3/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            K+ ++GD+GVGKSS++  F  D+F   ++PTIG  F  K V    +  K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFR L   YYRG+   I+VYD+T+ +TF+ L +   +           +  + GNK D  
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELR--QHGPPSIVVAIAGNKCDLT 122

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
             R V +++  ++A     +F+E SAK  +N+ + F E+  +I
Sbjct: 123 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  112 bits (281), Expect = 2e-32
 Identities = 28/163 (17%), Positives = 59/163 (36%), Gaps = 6/163 (3%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           ++LM+G    GK+++L             T           V  K +   +WD  GQ++ 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI----VTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 57

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV--DKE 133
           R L   Y++  QG+I V D   R+      +   + +         + +    +   +  
Sbjct: 58  RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 117

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           +   +T K G++  R          A +   + +  + L  ++
Sbjct: 118 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  112 bits (281), Expect = 4e-32
 Identities = 60/167 (35%), Positives = 97/167 (58%), Gaps = 3/167 (1%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           L K++++GDSGVGK+SL+  + +  F  +   TIG DF  K V V  + + + IWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 73  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST--NQDCIKLLVGNKV 130
           ERF++L  ++YRGA   ++V+DVT  +TF  L     + +   S    ++   +++GNK+
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121

Query: 131 DKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           D E+ +V TK+       +    + E SAK  +NV+Q F+ +    L
Sbjct: 122 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 168

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 2e-31
 Identities = 47/159 (29%), Positives = 73/159 (45%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           +++ + G  GVGKSSL+L F    F E       D   + +        L I DT G  +
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 62

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           F  +           I+VY +T R +   L  ++ +  ++    +    +LVGNK D+  
Sbjct: 63  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 122

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
            R V   E    AR + C F+E SAK   NV++ F+EL+
Sbjct: 123 SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 161

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  110 bits (274), Expect = 3e-31
 Identities = 39/165 (23%), Positives = 62/165 (37%), Gaps = 8/165 (4%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++LM+G    GK+++L            PT+G + +        K +K  +WD  GQ++
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDK 68

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE- 133
            R L   YY G QG+I V D   RD            I      +D I L+  NK D   
Sbjct: 69  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ-ELHRIINDREMRDAIILIFANKQDLPD 127

Query: 134 --SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
                 + +K G+   R+         A +   + +    L    
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 5e-31
 Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 15/176 (8%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            KL+++GD   GK+ LL+  + D F E+      +  V  ++V GK+++LA+WDTAG E 
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I   VGNK D  +
Sbjct: 63  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL--VGNKKDLRN 120

Query: 135 ERVVTKK------------EGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKIL 177
           +    ++            EG + A   G   ++ECSAKT+  V++ FE      L
Sbjct: 121 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 176

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (270), Expect = 1e-30
 Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 4/163 (2%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           K++++G+  VGKSS++  +    F ++   TIGVDF  + + V  + ++L +WDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           F  +T +YYRGAQ  ++V+  T R++F  +S    K     +   D    LV NK+D   
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV---VAEVGDIPTALVQNKIDLLD 120

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
           +  +  +E    A+     F   S K  +NV + F+ L  K L
Sbjct: 121 DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 163

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  108 bits (270), Expect = 2e-30
 Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 8/167 (4%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++L++G  G GK+++L            PTIG + +     +  K LKL +WD  GQ  
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVET----LSYKNLKLNVWDLGGQTS 73

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE- 133
            R     YY     +I V D T +D  +  S      +      QD   L+  NK D+  
Sbjct: 74  IRPYWRCYYADTAAVIFVVDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 134 --SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
             S   V+K+  +   ++     +  SA     + +  + L+  I +
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 179

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  106 bits (265), Expect = 9e-30
 Identities = 61/170 (35%), Positives = 99/170 (58%), Gaps = 6/170 (3%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKL-KLAIWDTAG 71
           + K++++GDSGVGK+SL+  + +D + ++   TIG DF  K V V G K+  + +WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTN--QDCIKLLVGNK 129
           QERF++L  ++YRGA   ++VYDVT   +F N+     + +   + N  +    +++GNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 130 VDKESER-VVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEELVLKIL 177
           +D E  + +V++K     A+  G       SAK  +NV   FEE+    L
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 171

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (256), Expect = 2e-28
 Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 16/177 (9%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           K++++GDS  GK++LL  F  D F E       +      ++  ++++L++WDT+G   +
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 63

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD---- 131
             +    Y  +  +++ +D++R +T  ++   W  EI  +    +   LLVG K D    
Sbjct: 64  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTD 121

Query: 132 --------KESERVVTKKEGINFAREYG-CLFIECSAKTRVN-VQQCFEELVLKILD 178
                      +  V+  +G N A++ G   +IECSA    N V+  F    L  ++
Sbjct: 122 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 178

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 3e-28
 Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 3/164 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            KL + G +GVGKS+L++ F +  F                 +  + + + I DTAGQE 
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
                  + R  +G ++VYD+T R +F  +  +    +D     ++   +LVGNK D + 
Sbjct: 63  TIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLK-NILDEIKKPKNVTLILVGNKADLDH 120

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKT-RVNVQQCFEELVLKIL 177
            R V+ +EG   A E  C F ECSA T   N+ + F EL  ++ 
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVR 164

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (253), Expect = 4e-28
 Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 6/169 (3%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           FKL+++GD G GK++ +    +  F ++   T+GV+            +K  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           +F  L   YY  AQ  I+++DVT R T+ N+ +      DL    ++   +L GNKVD +
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWH---RDLVRVCENIPIVLCGNKVDIK 120

Query: 134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182
             +V  K   I F R+    + + SAK+  N ++ F  L  K++  P+L
Sbjct: 121 DRKVKAKS--IVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 167

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 1e-27
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 1/162 (0%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            K+ ++G   VGKSSL + F    F +       +   K + V G++  L + DTAGQ+ 
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 64

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
           +     +Y     G I+VY VT   +F  +  +  K +D          +LVGNK D   
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLD-MVGKVQIPIMLVGNKKDLHM 123

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           ERV++ +EG   A  +   F+E SAK        F  ++L+ 
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 165

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score =  100 bits (250), Expect = 1e-27
 Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 8/165 (4%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            +LLM+G    GK+++L  F  ++ +    TI          +  +  KL IWD  GQ+ 
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVD----TISPTLGFNIKTLEHRGFKLNIWDVGGQKS 58

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
            R+   +Y+    G+I V D   R    +      + + +         L+  NK D   
Sbjct: 59  LRSYWRNYFESTDGLIWVVDSADRQRMQDCQREL-QSLLVEERLAGATLLIFANKQDLPG 117

Query: 135 ERVVTK---KEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
                       ++  R +      CSA T  ++    + L+  I
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score =  100 bits (250), Expect = 2e-27
 Identities = 34/165 (20%), Positives = 76/165 (46%), Gaps = 8/165 (4%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            K++++G    GK+++L  F+ +     SPTIG + +   ++      +  +WD  GQE 
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVIN----NTRFLMWDIGGQES 71

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE- 133
            R+  ++YY   + +I+V D T R+  +   +   K +      +  + L+  NK D + 
Sbjct: 72  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL-LIFANKQDVKE 130

Query: 134 --SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
             +   +++   +   +++      C A T   + Q  E ++ ++
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 2e-27
 Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 2/163 (1%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
           +K+L++G  GVGKS+L   F        +   G     + + V G++  L ++D   Q+ 
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAG-HTYDRSIVVDGEEASLMVYDIWEQDG 60

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
            R L           ++VY VT + +F   S++  +         D   +LVGNK D   
Sbjct: 61  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRR-ARQTDDVPIILVGNKSDLVR 119

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
            R V+  EG   A  + C FIE SA    NVQ  FE +V +I 
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIR 162

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 99.3 bits (246), Expect = 7e-27
 Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 8/168 (4%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71
           D   ++L++G    GK++LL    S++   ++PT G + K        +  KL +WD  G
Sbjct: 14  DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQS----QGFKLNVWDIGG 69

Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
           Q + R    SY+     +I V D   R  F   +     E+           L+  NK D
Sbjct: 70  QRKIRPYWRSYFENTDILIYVIDSADRKRFEE-TGQELTELLEEEKLSCVPVLIFANKQD 128

Query: 132 ---KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
                    + +   ++  R+       CSA T   VQ     +   +
Sbjct: 129 LLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.5 bits (241), Expect = 3e-26
 Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 2/168 (1%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTS--DNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDT 69
           +  +++++IG+ GVGKS+L   F    D+ +     +G D   + + V G+   + + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 70  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
              +        +        ++            +     ++      +D   +LVGNK
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
            D    R V+  EG   A  + C FIE SA  + NV++ FE +V ++ 
Sbjct: 121 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVR 168

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.1 bits (227), Expect = 3e-24
 Identities = 32/168 (19%), Positives = 57/168 (33%), Gaps = 15/168 (8%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
           KLL +G    GK++LL    +D    L PT          ++    +K   +D  G  + 
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWH----PTSEELAIGNIKFTTFDLGGHIQA 57

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135
           R L   Y+    GI+ + D    + F          +   +  +D   +++GNK+D  + 
Sbjct: 58  RRLWKDYFPEVNGIVFLVDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 136 RVVTK----------KEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
               +                  +       CS   R    + F+ L 
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.8 bits (224), Expect = 1e-23
 Identities = 32/164 (19%), Positives = 64/164 (39%), Gaps = 4/164 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            +L ++GD+  GKSSL+  F + +++ L  T    +K K + V G+   + I + AG   
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK-KEMLVDGQTHLVLIREEAGAPD 64

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
            +    +       +  + D       + L    +              +   +++   S
Sbjct: 65  AKFSGWADA--VIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASS 122

Query: 135 ERVVTKKEGINFARE-YGCLFIECSAKTRVNVQQCFEELVLKIL 177
            RVV          +   C + E  A   +NV + F+E+  K++
Sbjct: 123 PRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVV 166

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 88.6 bits (218), Expect = 8e-23
 Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 6/166 (3%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            ++L++G  G GK+++L            PTIG + +        K LK  +WD  G   
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVT----YKNLKFQVWDLGGLTS 61

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLL--VGNKVDK 132
            R     YY     +I V D   RD            ++     +  + +     +    
Sbjct: 62  IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 121

Query: 133 ESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
            +   +    G+   ++      + SA     + +  E LV  +  
Sbjct: 122 MTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 167

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 86.7 bits (213), Expect = 3e-22
 Identities = 34/163 (20%), Positives = 66/163 (40%), Gaps = 9/163 (5%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
            +L ++G    GK++ +    S  F E++ PT           +    + + +WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPT----VGFNMRKITKGNVTIKLWDIGGQP 58

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133
           RFR++   Y RG   I+ + D   ++     S      +      Q    L++GNK D  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEA-SKNELHNLLDKPQLQGIPVLVLGNKRDLP 117

Query: 134 S---ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
               E+ + +K  ++  ++        S K + N+    + L+
Sbjct: 118 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 160

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.5 bits (216), Expect = 5e-22
 Identities = 31/180 (17%), Positives = 55/180 (30%), Gaps = 17/180 (9%)

Query: 9   QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWD 68
           Q +    +LL++G    GKS+++      +      T G+            K+   ++D
Sbjct: 1   QVYRATHRLLLLGAGESGKSTIVKQMRILHV---VLTSGIFET----KFQVDKVNFHMFD 53

Query: 69  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNL---------SDVWAKEIDLYSTNQ 119
             GQ   R      +     II V   +  +              +    K I      +
Sbjct: 54  VGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 113

Query: 120 DCIKLLVGNKVDKESERVVTKKEGI-NFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178
               +L  NK D  +E+V+  K  I ++  E+        A                I D
Sbjct: 114 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRD 173

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.7 bits (203), Expect = 3e-20
 Identities = 32/198 (16%), Positives = 56/198 (28%), Gaps = 40/198 (20%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            KLL++G    GKS+ +      +   + PT G+      +     +    + D  GQ  
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGSGV-PTTGIIEYPFDLQSVIFR----MVDVGGQRS 57

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNL---------SDVWAKEIDLYSTNQDCIKLL 125
            R      +     I+ +  ++  D              S    + I  Y   Q+   +L
Sbjct: 58  ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL 117

Query: 126 VGNKVDKESERVVTKKEGINFAREYG--------------------------CLFIECSA 159
             NK D   E+++       F    G                                 A
Sbjct: 118 FLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCA 177

Query: 160 KTRVNVQQCFEELVLKIL 177
               N++  F  +   IL
Sbjct: 178 TDTENIRFVFAAVKDTIL 195

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.0 bits (191), Expect = 1e-18
 Identities = 31/168 (18%), Positives = 52/168 (30%), Gaps = 17/168 (10%)

Query: 14  LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73
           L K+L++G    GKS+ L      + ++  PT G+       D   K +   + D  GQ 
Sbjct: 2   LVKILLLGAGESGKSTFLKQMRIIHGQD--PTKGIHEY----DFEIKNVPFKMVDVGGQR 55

Query: 74  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNL---------SDVWAKEIDLYSTNQDCIKL 124
             R      +     I+ +   +  D              S    + I       +   +
Sbjct: 56  SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 115

Query: 125 LVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172
           L  NK D   E+V        F    G        +    + +CF   
Sbjct: 116 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQK--FLVECFRGK 161

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 77.0 bits (188), Expect = 3e-18
 Identities = 28/177 (15%), Positives = 55/177 (31%), Gaps = 20/177 (11%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            KL+ +G    GK++LL     D   +  PT+         ++    +    +D  G  +
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLH----PTSEELTIAGMTFTTFDLGGHIQ 69

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
            R +  +Y     GI+ + D    +      +     +    T  +   L++GNK+D+  
Sbjct: 70  ARRVWKNYLPAINGIVFLVDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRPE 128

Query: 135 ERVVTK---------------KEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
                +                  +            CS   R    + F  +   I
Sbjct: 129 AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.1 bits (178), Expect = 9e-17
 Identities = 25/182 (13%), Positives = 54/182 (29%), Gaps = 10/182 (5%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75
            +L +G    GK+ L +   +  + +   +I     +  V+         I     +   
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLR 61

Query: 76  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEI--DLYSTNQDCIKLLVGNKVDKE 133
             L   +   A+ ++ V D             +  ++  D  +       L+  NK D  
Sbjct: 62  FQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 121

Query: 134 SERVVT------KKE--GINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAE 185
             +         +KE   +   R      ++ S+     + +  +E     L       E
Sbjct: 122 MAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLE 181

Query: 186 GS 187
            S
Sbjct: 182 CS 183

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.3 bits (176), Expect = 2e-16
 Identities = 32/198 (16%), Positives = 54/198 (27%), Gaps = 43/198 (21%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
            KLL++G    GKS+++      +        G    +       K L   ++D  GQ  
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHE----AGTG----IVETHFTFKDLHFKMFDVGGQRS 54

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLY---------STNQDCIKLL 125
            R      + G   II    ++  D      +   +  +               D   +L
Sbjct: 55  ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIIL 114

Query: 126 VGNKVDKESERVVTKKEGINFAREYG--------------------------CLFIECSA 159
             NK D   E++      I +    G                                 A
Sbjct: 115 FLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCA 174

Query: 160 KTRVNVQQCFEELVLKIL 177
               NVQ  F+ +   I+
Sbjct: 175 TDTKNVQFVFDAVTDVII 192

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 50.5 bits (119), Expect = 1e-08
 Identities = 31/166 (18%), Positives = 48/166 (28%), Gaps = 18/166 (10%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTA---- 70
            K+++ G    GKSSLL +        ++   G    V    +    + L I DTA    
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 71  ----GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLV 126
                +             A  ++ + D T  D              +          +V
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA---EIWPEFIARLPAKLPITVV 118

Query: 127 GNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172
            NK D          E +  +   G   I  SA+T   V      L
Sbjct: 119 RNKADI-------TGETLGMSEVNGHALIRLSARTGEGVDVLRNHL 157

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.4 bits (119), Expect = 2e-08
 Identities = 36/201 (17%), Positives = 63/201 (31%), Gaps = 20/201 (9%)

Query: 13  YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72
           Y   +++ G    GK+SLL   T+D+     PT+     +   D  G  +   + D  G 
Sbjct: 2   YQPSIIIAGPQNSGKTSLLTLLTTDSV---RPTVVSQEPLSAADYDGSGVT--LVDFPGH 56

Query: 73  ERFRTLTSSYY-----RGAQGIIMVYDVTRRDTFTNLSDVWAK--EIDLYSTNQDCIKLL 125
            + R   S Y           I MV         T  ++       I   S       L+
Sbjct: 57  VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 116

Query: 126 VGNKVDKESERVVTKK--------EGINFAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177
             NK +  + R  +K         + +   R+     +E         +   + L     
Sbjct: 117 ACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDG 176

Query: 178 DTPSLLAEGSKGLKKNIFKQK 198
              + L       + +I K+K
Sbjct: 177 FKFANLEASVVAFEGSINKRK 197

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 47.7 bits (112), Expect = 1e-07
 Identities = 23/166 (13%), Positives = 46/166 (27%), Gaps = 4/166 (2%)

Query: 19  MIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ----ER 74
           ++G    GKSSLL + T  + +              V    ++ +  + D  G       
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE 65

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
            + L   + R      ++  V         +    ++           +  +      + 
Sbjct: 66  GKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDL 125

Query: 135 ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180
                 K   +     G   +  SA T   +    E L   +  TP
Sbjct: 126 LEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTP 171

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 43.6 bits (101), Expect = 3e-06
 Identities = 21/166 (12%), Positives = 48/166 (28%), Gaps = 2/166 (1%)

Query: 19  MIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL 78
           ++G   VGKS+LL +        +SP      K     +   + ++   DT G  +    
Sbjct: 10  IVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDA 69

Query: 79  TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV 138
              +        +                  ++  +    +  +  +    V  + +   
Sbjct: 70  LGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK 129

Query: 139 TKKEGINFAREYGCL--FIECSAKTRVNVQQCFEELVLKILDTPSL 182
             +E +    E          SA     V +   +L+  + + P  
Sbjct: 130 YPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPEGPFF 175

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.5 bits (101), Expect = 4e-06
 Identities = 30/181 (16%), Positives = 51/181 (28%), Gaps = 11/181 (6%)

Query: 7   SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAI 66
           S+ E     K+ ++G   VGKS+L  +  +     +SP  G        +V     K   
Sbjct: 1   SKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVF 60

Query: 67  WDTAGQERFRTLTSSYYRGAQGI----------IMVYDVTRRDTFTNLSDVWAKEIDLYS 116
            DTAG  R   +                     ++V  +      T      A  ++   
Sbjct: 61  VDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRG 120

Query: 117 TNQDCIKLLVGNKVDKESERVVTKKE-GINFAREYGCLFIECSAKTRVNVQQCFEELVLK 175
                +       V +E       K              I  SA    N+ +  + + L 
Sbjct: 121 RASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLA 180

Query: 176 I 176
            
Sbjct: 181 Y 181

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.7 bits (94), Expect = 3e-05
 Identities = 23/167 (13%), Positives = 60/167 (35%), Gaps = 20/167 (11%)

Query: 16  KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG---- 71
           +++++G   VGKS+LL    +++   ++   G    V   ++  + +   I DTAG    
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61

Query: 72  -----QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLV 126
                +      T      A  ++ V D +      +   +   +   Y    + + ++ 
Sbjct: 62  TNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVE 121

Query: 127 GNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173
               ++   ++ T +             ++ SA     +++  E + 
Sbjct: 122 KINEEEIKNKLGTDRH-----------MVKISALKGEGLEKLEESIY 157

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 40.6 bits (94), Expect = 6e-05
 Identities = 34/186 (18%), Positives = 56/186 (30%), Gaps = 4/186 (2%)

Query: 15  FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74
             +L++G  GVGKSS + S   +    +SP      +   V        L I DT G   
Sbjct: 33  LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 92

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134
              +        +  ++   +        L       +D        I    G  +  ++
Sbjct: 93  GGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKL--VAKAITDSFGKGIWNKA 150

Query: 135 ERVVTKKEGINFARE-YGCLFIECSAKTRVNVQQCFEELVLKIL-DTPSLLAEGSKGLKK 192
              +T  +        Y   F + S      V+            D P +L E S    K
Sbjct: 151 IVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKDAQASDIPVVLIENSGRCNK 210

Query: 193 NIFKQK 198
           N   +K
Sbjct: 211 NDSDEK 216

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (91), Expect = 6e-05
 Identities = 21/170 (12%), Positives = 48/170 (28%), Gaps = 9/170 (5%)

Query: 12  DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDT-- 69
           D   ++   G S  GKSS L + T+      +       ++  +       +L       
Sbjct: 14  DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 73

Query: 70  ------AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK 123
                   + +++     Y    Q +  +  +          D    E  + S     + 
Sbjct: 74  YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVL 133

Query: 124 LLVGNKVDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEEL 172
           L   +K+   + +              G       S+  +  V +  ++L
Sbjct: 134 LTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKL 183

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 38.2 bits (87), Expect = 2e-04
 Identities = 27/170 (15%), Positives = 45/170 (26%), Gaps = 3/170 (1%)

Query: 19  MIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL 78
           ++G   VGKS+LL           S                   +    DT G       
Sbjct: 10  IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR 69

Query: 79  TSSYYRGAQGIIMVYDVTRRDTFTNLSD--VWAKEIDLYSTNQDCIKLLVGNKVDKESER 136
             +          + DV         +      + +           +L  NKVD   E+
Sbjct: 70  AINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEK 129

Query: 137 VVTKKEGINFAREYGCL-FIECSAKTRVNVQQCFEELVLKILDTPSLLAE 185
                     A +   L  +  SA+T +NV      +   + +      E
Sbjct: 130 ADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPE 179

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.8 bits (86), Expect = 3e-04
 Identities = 30/167 (17%), Positives = 52/167 (31%), Gaps = 17/167 (10%)

Query: 19  MIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE----- 73
           ++G   VGKS+L           +    GV        V        + DT G       
Sbjct: 5   IVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQD 64

Query: 74  ----RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129
               + + +T +  R A  ++ V D  R  T  + S           T     K      
Sbjct: 65  IISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANK---AEN 121

Query: 130 VDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176
           + +    V  +   + F        I  SA+  +N+    E ++ K+
Sbjct: 122 LREFEREVKPELYSLGFGE-----PIPVSAEHNINLDTMLETIIKKL 163

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 30/194 (15%), Positives = 53/194 (27%), Gaps = 8/194 (4%)

Query: 15  FKLLMIGDSGVGKSSLLLSFT-SDNFEELSPTIGVDFKVK--YVDVGGKKLKLAIWDTAG 71
             + + G++G GKSS + +     N EE +   GV       +         +  WD  G
Sbjct: 57  LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 116

Query: 72  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131
                    +Y    +     YD     + T        +I    +        V  KVD
Sbjct: 117 IGSTNFPPDTYL--EKMKFYEYDFFIIISATRFKK-NDIDIAKAISMMKKEFYFVRTKVD 173

Query: 132 KESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLK 191
            +       +    F +E     I  +           E  +  +L   ++       L 
Sbjct: 174 SDITNEADGEP-QTFDKEKVLQDIRLNCVNTFRENGIAEPPIF-LLSNKNVCHYDFPVLM 231

Query: 192 KNIFKQKPPEADAA 205
             +    P      
Sbjct: 232 DKLISDLPIYKRHN 245

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.8 bits (84), Expect = 7e-04
 Identities = 28/174 (16%), Positives = 56/174 (32%), Gaps = 16/174 (9%)

Query: 19  MIGDSGVGKSSLLLSFT-------SDNFEELSPTIGVDF-----KVKYVDVGGKKLKLAI 66
           ++G   VGKS+LL   +         +F  L P +G+            D+ G       
Sbjct: 6   LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ 65

Query: 67  WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLV 126
               G +  R +  +        +   +           +    E +L  T +  I +  
Sbjct: 66  GVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVAN 125

Query: 127 GNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 180
              + + +E +    E               SA TR  +++   E+  ++ +TP
Sbjct: 126 KMDMPEAAENL----EAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTP 175

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.98
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.98
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.94
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.93
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.92
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.92
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.91
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.9
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.9
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.89
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.89
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.89
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.88
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.88
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.86
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.86
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.85
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.84
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.84
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.83
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.82
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.8
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.8
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.75
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.75
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.73
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.7
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.68
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.64
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.63
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.61
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.61
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.59
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.53
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.47
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.37
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.36
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.33
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.2
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.17
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.0
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.97
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.91
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.87
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.44
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.31
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.28
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.2
d1okkd2	207	GTPase domain of the signal recognition particle r	98.16
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.14
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.13
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.11
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.1
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.07
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.04
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.02
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.83
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.73
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.63
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.6
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.6
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.6
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.54
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.51
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.46
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.45
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.45
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.44
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.44
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.42
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.4
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.37
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.36
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.34
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.34
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.31
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.31
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.3
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.27
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.25
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.23
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.2
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.2
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.17
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.15
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.14
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.13
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.11
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.1
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.1
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.1
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.09
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.09
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.08
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.07
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.07
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.07
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.05
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.05
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.04
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.02
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.02
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.02
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.01
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.98
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.97
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.97
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.96
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.94
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.91
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.89
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.88
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.88
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.87
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.83
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.83
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.77
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.76
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.76
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.73
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.68
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.67
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.67
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.66
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.64
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.62
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.61
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.56
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.55
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.48
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.48
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.46
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.44
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.41
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.36
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.35
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.35
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.31
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.3
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.3
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.25
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.25
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.24
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.22
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.16
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.03
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.93
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.9
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.83
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.67
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.55
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.54
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.54
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.53
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.39
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.37
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.33
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.32
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.31
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.26
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.22
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.18
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.17
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.13
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.08
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.08
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.03
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.0
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.99
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.92
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.9
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.9
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.74
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.73
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.61
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.54
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.5
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.46
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.37
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.28
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.23
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.15
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.97
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.96
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.68
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	93.61
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.61
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.58
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.58
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.55
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.42
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.33
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.18
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.05
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.82
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.59
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.58
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.73
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.37
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	90.38
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	90.29
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	89.49
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	89.04
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.2
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	87.8
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.73
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.17
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	86.04
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	85.93
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	85.73
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	85.5
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	85.39
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	85.36
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	85.05
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	84.94
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	84.77
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	84.05
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	83.96
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	82.89
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	82.64
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	82.36
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	81.77
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	81.62
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	80.75

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-37  Score=221.83  Aligned_cols=171  Identities=32%  Similarity=0.471  Sum_probs=153.7

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      +....+||+++|++|||||||+++|+.+.+...+.+...+.....+.+++..+.+.+||++|...+...+..+++.+|++
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            45677999999999999999999999999887776555666667788899999999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  169 (210)
                      ++|||++++.++..+.. |...+.......++|++||+||+|+...+....+++..++...+++|++|||++|.|++++|
T Consensus        82 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  160 (173)
T d2fn4a1          82 LLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  160 (173)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             eeecccccccccchhhh-hhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHH
Confidence            99999999999999988 77766665666789999999999998888888889999999999999999999999999999


Q ss_pred             HHHHHHHHcCCC
Q 028329          170 EELVLKILDTPS  181 (210)
Q Consensus       170 ~~l~~~~~~~~~  181 (210)
                      ++|++.+.++++
T Consensus       161 ~~l~~~i~k~~~  172 (173)
T d2fn4a1         161 EQLVRAVRKYQE  172 (173)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhc
Confidence            999999977654

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-37  Score=217.85  Aligned_cols=163  Identities=30%  Similarity=0.385  Sum_probs=132.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|++|||||||+++|.+..+....++.+. .+...+.+++..+.+.+||++|++.+..++..+++.+|++++|||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d   80 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGH-TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS   80 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC---------CE-EEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeee-eecceeeccccccceeeeecccccccceecccchhhhhhhceecc
Confidence            7999999999999999999998876554444443 445567889999999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHH
Q 028329           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVL  174 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~  174 (210)
                      ++++.+++.+.. |...+........+|+++|+||+|+...+.+...++..++..++++|++|||++|.|++++|.+|++
T Consensus        81 ~t~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1          81 VTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             TTCHHHHHHHHH-HHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccccccccc-ccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            999999999988 7777776666678999999999999888888889999999999999999999999999999999999


Q ss_pred             HHHcC
Q 028329          175 KILDT  179 (210)
Q Consensus       175 ~~~~~  179 (210)
                      .+..+
T Consensus       160 ~i~~~  164 (168)
T d2gjsa1         160 QIRLR  164 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.9e-36  Score=214.78  Aligned_cols=166  Identities=48%  Similarity=0.833  Sum_probs=149.2

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ++.+||+++|++|||||||+++|..+.+...+. +.+.+.....+...+..+.+.+||+||++.+..++..+++++|++|
T Consensus         3 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~i   82 (169)
T d3raba_           3 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   82 (169)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEE
T ss_pred             CeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            568999999999999999999999988766555 7778888888888999999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      +|||+++++++..... |...+.. ....+.|+++++||.|+...+.+..+++..+++.+++++++|||++|.|++++|+
T Consensus        83 lv~d~~~~~s~~~~~~-~~~~~~~-~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~  160 (169)
T d3raba_          83 LMYDITNEESFNAVQD-WSTQIKT-YSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE  160 (169)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHH-HCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEECccchhhhhhhh-hhhhhhc-ccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            9999999999999988 5555544 3456789999999999988888888899999999999999999999999999999


Q ss_pred             HHHHHHHcC
Q 028329          171 ELVLKILDT  179 (210)
Q Consensus       171 ~l~~~~~~~  179 (210)
                      +|++.+.++
T Consensus       161 ~l~~~i~ek  169 (169)
T d3raba_         161 RLVDVICEK  169 (169)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhhC
Confidence            999998764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.3e-36  Score=213.51  Aligned_cols=165  Identities=33%  Similarity=0.482  Sum_probs=147.5

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      .+||+++|++|||||||++++.++.+.+.+.+.........+..++..+.+.+||++|...+...+..+++.+|++++||
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~   83 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVY   83 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEec
Confidence            58999999999999999999999888766553333444566788999999999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCC-CHHHHHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV-NVQQCFEEL  172 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~-~i~~~~~~l  172 (210)
                      |+++++||+++.. |...+.+.....++|+++++||+|+...+.+..+++..++..++++|++|||+++. ||+++|..|
T Consensus        84 d~~d~~Sf~~~~~-~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~l  162 (169)
T d1x1ra1          84 SVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL  162 (169)
T ss_dssp             ETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHH
T ss_pred             ccccchhhhccch-hhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHHH
Confidence            9999999999988 77777766667789999999999999888899999999999999999999999886 999999999


Q ss_pred             HHHHHcC
Q 028329          173 VLKILDT  179 (210)
Q Consensus       173 ~~~~~~~  179 (210)
                      ++.+.++
T Consensus       163 ~~~i~~~  169 (169)
T d1x1ra1         163 VRVIRQQ  169 (169)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9998764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=1.9e-36  Score=214.60  Aligned_cols=164  Identities=35%  Similarity=0.571  Sum_probs=144.6

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||+++|+.+.+...+. +.+..+ ...+.+++..+.+.+||++|...+..++..+++++|++++|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            5899999999999999999999998876654 655544 45677899999999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  172 (210)
                      ||+++.++++.+.. |+..+.......++|+++|+||.|+...+.+..++++.++..+++++++|||++|.|++++|.+|
T Consensus        83 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          83 FSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             eeccchhhhhhHHH-HHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            99999999999988 88877776667789999999999998888888999999999999999999999999999999999


Q ss_pred             HHHHHcC
Q 028329          173 VLKILDT  179 (210)
Q Consensus       173 ~~~~~~~  179 (210)
                      ++.+.++
T Consensus       162 ~~~i~~r  168 (168)
T d1u8za_         162 MREIRAR  168 (168)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHCc
Confidence            9988653

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-36  Score=213.20  Aligned_cols=164  Identities=30%  Similarity=0.447  Sum_probs=146.6

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...+||+++|++|||||||+++|+++.+...+. +.+..+ ...+.+++..+.+.+||++|...+..++..++..+|+++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            356899999999999999999999988876554 665554 566788999999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      +|||++++++|..+.. |...+.......++|+++|+||+|+...+.+..+++..++.+++++|++|||++|.|++++|.
T Consensus        81 lv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~  159 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR  159 (167)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhh-hhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHH
Confidence            9999999999999988 777776666677899999999999988888899999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028329          171 ELVLKIL  177 (210)
Q Consensus       171 ~l~~~~~  177 (210)
                      .|++.+.
T Consensus       160 ~li~~~~  166 (167)
T d1xtqa1         160 RIILEAE  166 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9998875

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-36  Score=213.92  Aligned_cols=167  Identities=33%  Similarity=0.525  Sum_probs=144.9

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      ..+||+++|++|||||||+++|+.+.+...+.+.........+.+++..+.+.+||++|...+...+..++..+|++++|
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            34899999999999999999999998876655334456667788899999999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  172 (210)
                      ||.++++|++.+.. |...+.........|++||+||+|+...+.+..+++..+++.++++|++|||++|.||+++|.+|
T Consensus        84 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l  162 (171)
T d2erya1          84 FSVTDRGSFEEIYK-FQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL  162 (171)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eccccccchhhHHH-HhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHH
Confidence            99999999999988 66666555666789999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHHcCC
Q 028329          173 VLKILDTP  180 (210)
Q Consensus       173 ~~~~~~~~  180 (210)
                      ++.+.+.+
T Consensus       163 ~~~i~k~~  170 (171)
T d2erya1         163 VRVIRKFQ  170 (171)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99987654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-36  Score=213.65  Aligned_cols=164  Identities=38%  Similarity=0.727  Sum_probs=141.8

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      +.+||+++|++|||||||+++|..+.+...+. +.+.+........++..+.+.+||++|...+..++..+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            57999999999999999999999999877655 77778888888889999999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  171 (210)
                      |||+++++||+.+.. |+..+.... ....|++|++||+|+...+.+..+++..++..+++++++|||++|.||+++|.+
T Consensus        82 v~d~~~~~Sf~~~~~-~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~  159 (167)
T d1z08a1          82 VYDITDEDSFQKVKN-WVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD  159 (167)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEeCCchhHHHhhhh-hhhhccccc-ccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHH
Confidence            999999999999988 665554432 456788999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHc
Q 028329          172 LVLKILD  178 (210)
Q Consensus       172 l~~~~~~  178 (210)
                      |++++++
T Consensus       160 l~~~i~~  166 (167)
T d1z08a1         160 LCKRMIE  166 (167)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9999875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-36  Score=212.49  Aligned_cols=165  Identities=43%  Similarity=0.802  Sum_probs=148.0

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ++.+||+++|++|||||||+++|+.+.+...+. +.+.++....+.+++..+.+.+||++|++.+...+..+++++|+++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i   82 (171)
T d2ew1a1           3 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI   82 (171)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEE
Confidence            567999999999999999999999998876554 7778888888899999999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      +|+|++++.++..+.. |...+... ....+|++||+||+|++....+..+++..++...++++++|||++|.||+++|.
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~  160 (171)
T d2ew1a1          83 LTYDITCEESFRCLPE-WLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL  160 (171)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             Eeeecccchhhhhhhh-hhhhhccc-ccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHH
Confidence            9999999999999998 55555442 345689999999999988788888899999999999999999999999999999


Q ss_pred             HHHHHHHc
Q 028329          171 ELVLKILD  178 (210)
Q Consensus       171 ~l~~~~~~  178 (210)
                      +|++.++.
T Consensus       161 ~l~~~l~~  168 (171)
T d2ew1a1         161 DLACRLIS  168 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.1e-36  Score=212.06  Aligned_cols=162  Identities=33%  Similarity=0.591  Sum_probs=147.4

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||+++|..+.+...+ ++.+.+........++..+.+.+||++|+..+...+..+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            489999999999999999999988876554 4788888888889999999999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  172 (210)
                      ||++++++++.+.. |+..+....  .++|++||+||+|+...+.+..++++.+++.++++++++||++|.|++++|++|
T Consensus        82 ~d~~~~~s~~~~~~-~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  158 (164)
T d1z2aa1          82 FSTTDRESFEAISS-WREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL  158 (164)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             Eeccchhhhhhccc-ccccccccC--CCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHH
Confidence            99999999999987 877776543  468999999999998888888889999999999999999999999999999999


Q ss_pred             HHHHHc
Q 028329          173 VLKILD  178 (210)
Q Consensus       173 ~~~~~~  178 (210)
                      ++.+++
T Consensus       159 ~~~~lq  164 (164)
T d1z2aa1         159 AEKHLQ  164 (164)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            998864

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-35  Score=210.47  Aligned_cols=163  Identities=53%  Similarity=0.868  Sum_probs=147.6

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ++.+||+++|++|||||||+++|.++.+...++ +.+.++.......++..+.+.+||++|++.+..++..+++.+|+++
T Consensus         2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~i   81 (166)
T d1z0fa1           2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   81 (166)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEE
Confidence            467999999999999999999999998877665 7777888888899999999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      +|||+++.+++..+.. |...+.. ......|+++++||.|+........+++..++...++++++|||++|.||+++|.
T Consensus        82 lv~d~~~~~s~~~~~~-~~~~~~~-~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~  159 (166)
T d1z0fa1          82 MVYDITRRSTYNHLSS-WLTDARN-LTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL  159 (166)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHH-HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeccCchHHHHHHHH-HHHHHHh-hccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999988 6666654 3456789999999999988888888899999999999999999999999999999


Q ss_pred             HHHHHH
Q 028329          171 ELVLKI  176 (210)
Q Consensus       171 ~l~~~~  176 (210)
                      +|++.+
T Consensus       160 ~i~~~i  165 (166)
T d1z0fa1         160 EAAKKI  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999876

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-36  Score=213.13  Aligned_cols=163  Identities=29%  Similarity=0.445  Sum_probs=140.4

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||+++|+.+.+...+. +.+.. ......+++..+.+.+||++|...+...+..+++.+|++++|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~-~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDT-YRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEE-EEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeec-cccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            5899999999999999999999998876554 55543 344567899999999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHH-hhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEI-DLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~-~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  171 (210)
                      ||+++++++..+.. |+..+ .......++|++||+||+|+...+.+..++++.++..+++++++|||++|.|++++|+.
T Consensus        81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~  159 (171)
T d2erxa1          81 YSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  159 (171)
T ss_dssp             EETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             eecccccchhcccc-hhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            99999999999988 55444 43344567999999999999888888889999999999999999999999999999999


Q ss_pred             HHHHHHc
Q 028329          172 LVLKILD  178 (210)
Q Consensus       172 l~~~~~~  178 (210)
                      |++.+.+
T Consensus       160 l~~~~~~  166 (171)
T d2erxa1         160 LLNLEKR  166 (171)
T ss_dssp             HHHTCCS
T ss_pred             HHHHHHH
Confidence            9986643

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-36  Score=210.87  Aligned_cols=164  Identities=35%  Similarity=0.569  Sum_probs=146.4

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      +.+||+++|++|||||||+++|+++.+...+.+...+.......+++..+.+.+||++|...+...+..+++++|++++|
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            46899999999999999999999999877666444456667788899999999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  172 (210)
                      ||++++.++..+.. |...+.......++|++||+||+|+...+....+++..++..+++++++|||++|.|++++|.+|
T Consensus        82 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i  160 (167)
T d1kaoa_          82 YSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             eeecchhhhhhhhc-hhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHH
Confidence            99999999999998 66666555556789999999999998888888889999999999999999999999999999999


Q ss_pred             HHHHH
Q 028329          173 VLKIL  177 (210)
Q Consensus       173 ~~~~~  177 (210)
                      ++++.
T Consensus       161 ~~~i~  165 (167)
T d1kaoa_         161 VRQMN  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            98763

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-35  Score=210.13  Aligned_cols=166  Identities=32%  Similarity=0.600  Sum_probs=145.4

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      +....+||+++|++|||||||+++|+.+.+...+. +.+ ......+...+..+.+.+||++|++.+...+..+++.+|+
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~   83 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   83 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhcccccce
Confidence            46678999999999999999999999999877665 444 4556667788899999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhC-CcEE
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYG-CLFI  155 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~  155 (210)
                      +++|||+++++||++...+|...++..  ..++|+++|+||+|+..            .+.+..+++..++..++ +.|+
T Consensus        84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~--~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~  161 (185)
T d2atxa1          84 FLICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYV  161 (185)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEE
T ss_pred             eeeccccchHHHHHHHHHHHHHHHHhc--CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEE
Confidence            999999999999999888788877764  45799999999999854            45678888999999987 6899


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHc
Q 028329          156 ECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       156 ~~sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      +|||++|.||+++|+.++++++.
T Consensus       162 E~SAk~~~gv~e~F~~li~~il~  184 (185)
T d2atxa1         162 ECSALTQKGLKTVFDEAIIAILT  184 (185)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EecCCCCcCHHHHHHHHHHHHcC
Confidence            99999999999999999998753

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-35  Score=208.68  Aligned_cols=163  Identities=40%  Similarity=0.631  Sum_probs=144.0

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      +.+||+++|++|||||||+++|..+.+...+. +.+ ......+..++..+.+.+||++|...+...+..+++++|++++
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSE-EEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccc-cccceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            46899999999999999999999999887665 444 4445667788999999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCcEEEEccCCCCCHHHHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~  170 (210)
                      |||++++++|+++.. |+..+.......++|++||+||+|+........+++..++... ++++++|||++|.|++++|.
T Consensus        81 v~d~~~~~sf~~~~~-~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~  159 (167)
T d1c1ya_          81 VYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             eeeccchhhhHhHHH-HHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHH
Confidence            999999999999999 6666655555678999999999999888888888888888874 68899999999999999999


Q ss_pred             HHHHHHH
Q 028329          171 ELVLKIL  177 (210)
Q Consensus       171 ~l~~~~~  177 (210)
                      +|++.+.
T Consensus       160 ~l~~~i~  166 (167)
T d1c1ya_         160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9999874

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-35  Score=209.59  Aligned_cols=165  Identities=50%  Similarity=0.881  Sum_probs=145.1

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      +.+||+|+|++|||||||++++.++.+...+. +.+.+.........+..+.+.+||++|+..+...+..++..+|++++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            57999999999999999999999998876655 66677777777888899999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  171 (210)
                      |||++++++|+.+.. |+..+... ...++|++||+||+|+...+....+++..++...+++++++||++|.|++++|.+
T Consensus        82 v~d~~~~~sf~~~~~-~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~  159 (173)
T d2a5ja1          82 VYDITRRETFNHLTS-WLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFIN  159 (173)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEeecChHHHHhHHH-HHHHHHHh-CCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            999999999999998 55555543 3467999999999999888888888999999999999999999999999999999


Q ss_pred             HHHHHHcC
Q 028329          172 LVLKILDT  179 (210)
Q Consensus       172 l~~~~~~~  179 (210)
                      +++.+.++
T Consensus       160 i~~~i~~~  167 (173)
T d2a5ja1         160 TAKEIYRK  167 (173)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988754

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=209.21  Aligned_cols=163  Identities=29%  Similarity=0.520  Sum_probs=141.9

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||+++|..+.+...+. +.+ .........++..+.+.+||++|++.+...+..+++++|++++|
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            5899999999999999999999999876665 554 45566677888999999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhC-CcEEEEcc
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYG-CLFIECSA  159 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~sa  159 (210)
                      ||+++++||+++..+|...+...  ..+.|+++|+||+|+..            .+.+..+++..++...+ ++|++|||
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~--~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  159 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA  159 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCT
T ss_pred             cccchHHHHHHHHHHHHHHHhhc--CCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeC
Confidence            99999999999988787777654  46799999999999853            34577888999998864 78999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcC
Q 028329          160 KTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~  179 (210)
                      ++|.||+++|+.+++.+++.
T Consensus       160 k~~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         160 LTQKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             TTCTTHHHHHHHHHHHHTSC
T ss_pred             CCCcCHHHHHHHHHHHHhcC
Confidence            99999999999999887544

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.2e-35  Score=210.72  Aligned_cols=171  Identities=51%  Similarity=0.826  Sum_probs=153.0

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      .+..+||+|+|++|||||||+++|..+.+...+ ++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus         3 ~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~   82 (194)
T d2bcgy1           3 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   82 (194)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            467899999999999999999999998877655 4788888888889999999999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  169 (210)
                      |+|||+++++++..... |...+.. .....+|+++|+||.|+.+...+..++...++...++.++++||++|.|++++|
T Consensus        83 i~v~d~t~~~s~~~~~~-~~~~~~~-~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f  160 (194)
T d2bcgy1          83 IIVYDVTDQESFNGVKM-WLQEIDR-YATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF  160 (194)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHH-HSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEeCcchhhhhhHhh-hhhhhhh-cccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHH
Confidence            99999999999999988 5555544 245678999999999999888899999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCcc
Q 028329          170 EELVLKILDTPSLL  183 (210)
Q Consensus       170 ~~l~~~~~~~~~~~  183 (210)
                      .++++.+.+.....
T Consensus       161 ~~l~~~i~~~~~~~  174 (194)
T d2bcgy1         161 LTMARQIKESMSQQ  174 (194)
T ss_dssp             HHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHhhhc
Confidence            99999997766543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-35  Score=208.36  Aligned_cols=166  Identities=48%  Similarity=0.821  Sum_probs=148.6

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ++.+||+++|++|||||||+++|..+.+...+. +.+.+.....+..++....+.+||++|++.+..++..+++.+|+++
T Consensus         3 ~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (174)
T d2bmea1           3 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   82 (174)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEE
Confidence            467999999999999999999999988876655 7777777777888999999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      +|||.++++++..+.. |...+.... ..++|+++|+||+|+........+.+..++...++++++|||++|.|++++|.
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~  160 (174)
T d2bmea1          83 LVYDITSRETYNALTN-WLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV  160 (174)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEecccchhHHHHhh-hhccccccc-CCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHH
Confidence            9999999999999988 555555433 46799999999999988888888888999999999999999999999999999


Q ss_pred             HHHHHHHcC
Q 028329          171 ELVLKILDT  179 (210)
Q Consensus       171 ~l~~~~~~~  179 (210)
                      ++.+.++++
T Consensus       161 ~l~~~i~~~  169 (174)
T d2bmea1         161 QCARKILNK  169 (174)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998754

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-35  Score=205.68  Aligned_cols=164  Identities=33%  Similarity=0.561  Sum_probs=145.4

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ..+||+++|++|||||||+++|+++.+...+. +.+..+ ...+...+..+.+.+||++|...+...+..++..++++++
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceee-ccceeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            35899999999999999999999999877665 555444 4456778899999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  171 (210)
                      |||.+++.+++.+.. |...+.......++|+++|+||+|+. .+.+..+++..++...++++++|||++|.||+++|.+
T Consensus        81 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~  158 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYT  158 (166)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHTCSSCCEEEEEECTTCS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             eecccccccHHHHHH-HHHHHHHhcCCCCCeEEEEecccccc-cccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHH
Confidence            999999999999988 88888877777789999999999985 4556778899999999999999999999999999999


Q ss_pred             HHHHHHcC
Q 028329          172 LVLKILDT  179 (210)
Q Consensus       172 l~~~~~~~  179 (210)
                      |++.+.++
T Consensus       159 i~~~i~~~  166 (166)
T d1ctqa_         159 LVREIRQH  166 (166)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHhC
Confidence            99998653

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-35  Score=207.70  Aligned_cols=164  Identities=40%  Similarity=0.702  Sum_probs=147.5

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      -.+||+++|++|||||||+++|..+.+...+. +.+.+.........+..+.+.+||++|++.+...+..+++.+|++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            35899999999999999999999998876554 88888888888889999999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  171 (210)
                      |||.++.++++.+.. |...+.. ...+++|+++|+||+|+..++.+..+++..++...+++|++|||++|.||+++|.+
T Consensus        85 v~d~~~~~s~~~~~~-~~~~~~~-~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~  162 (170)
T d1r2qa_          85 VYDITNEESFARAKN-WVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EeccchhhHHHHHHH-Hhhhhhh-ccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHH
Confidence            999999999999988 5555543 33567999999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHc
Q 028329          172 LVLKILD  178 (210)
Q Consensus       172 l~~~~~~  178 (210)
                      |++.+.+
T Consensus       163 l~~~i~~  169 (170)
T d1r2qa_         163 IAKKLPK  169 (170)
T ss_dssp             HHHTSCC
T ss_pred             HHHHHhh
Confidence            9988755

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-34  Score=206.54  Aligned_cols=163  Identities=32%  Similarity=0.563  Sum_probs=142.8

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      ..||+++|++|||||||+++|..+.+...+.++...........++..+.+.+||++|++.+...+..+++++|++++||
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            47999999999999999999999998776653333555666788999999999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-cEEEEccC
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIECSAK  160 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~  160 (210)
                      |+++++||+++..+|...+..+  ..++|++||+||+|+...            +.+..+++..++...+. +|++|||+
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAk  159 (177)
T d1kmqa_          82 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK  159 (177)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             ccchhHHHHHHHHHHHHHHHHh--CCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCC
Confidence            9999999999988788877764  457999999999999643            45677888999999884 79999999


Q ss_pred             CCCCHHHHHHHHHHHHHc
Q 028329          161 TRVNVQQCFEELVLKILD  178 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~  178 (210)
                      +|.||+++|+.+.+.+++
T Consensus       160 t~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         160 TKDGVREVFEMATRAALQ  177 (177)
T ss_dssp             TCTTHHHHHHHHHHHHHC
T ss_pred             CCcCHHHHHHHHHHHHhC
Confidence            999999999999998864

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-35  Score=208.73  Aligned_cols=163  Identities=31%  Similarity=0.495  Sum_probs=140.7

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||+++|+.+.+...+. |.+..+. .....++..+.+.+||++|...+. ....+++.+|++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccc-ccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            4899999999999999999999999876654 6665543 445678899999999999987764 455678889999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCC-CHHHHHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV-NVQQCFEE  171 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~-~i~~~~~~  171 (210)
                      ||+++++++..+.. |...+.......+.|+++|+||+|+...+.+..+++..++..++++|++|||++|. ||+++|.+
T Consensus        80 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~  158 (168)
T d2atva1          80 YDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYE  158 (168)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHH
T ss_pred             cccCCccchhhhhh-hcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHH
Confidence            99999999999988 66666555556789999999999998888899999999999999999999999998 59999999


Q ss_pred             HHHHHHcC
Q 028329          172 LVLKILDT  179 (210)
Q Consensus       172 l~~~~~~~  179 (210)
                      |++.+.++
T Consensus       159 l~~~i~~~  166 (168)
T d2atva1         159 LCREVRRR  166 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-35  Score=206.79  Aligned_cols=161  Identities=39%  Similarity=0.690  Sum_probs=144.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      +||+++|++|||||||+++|.++.+...+. +.+.+........++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            699999999999999999999999876655 7777788788888899999999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV  173 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~  173 (210)
                      |++++.++.++.. |+..+... ...++|+++|+||.|+...+....+++..++..+++++++|||++|.||+++|.+|+
T Consensus        81 d~~~~~s~~~i~~-~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~  158 (164)
T d1yzqa1          81 DITNVNSFQQTTK-WIDDVRTE-RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA  158 (164)
T ss_dssp             ETTCHHHHHTHHH-HHHHHHHH-HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             ccccccchhhhHh-hHHHHHHh-cCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHH
Confidence            9999999999998 55555443 245799999999999988888888899999999999999999999999999999999


Q ss_pred             HHHH
Q 028329          174 LKIL  177 (210)
Q Consensus       174 ~~~~  177 (210)
                      +++.
T Consensus       159 ~~l~  162 (164)
T d1yzqa1         159 AALP  162 (164)
T ss_dssp             HHSC
T ss_pred             HhhC
Confidence            8864

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-34  Score=205.41  Aligned_cols=162  Identities=37%  Similarity=0.672  Sum_probs=146.6

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      +.+||+++|++|||||||+++|..+.+...+. +.+.+........++....+.+||++|+..+..++..++..+|++++
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            57999999999999999999999999877665 77778888888889999999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  171 (210)
                      |||++++++|+.+.. |...+... ...+.|+++|+||+|+...+.+..+++..++...+++|++|||++|.||+++|.+
T Consensus        83 v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~  160 (167)
T d1z0ja1          83 VYDITKEETFSTLKN-WVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  160 (167)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EeeechhhhhhhHHH-hhhhhhhc-cCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            999999999999988 55555443 3567999999999999888888999999999999999999999999999999999


Q ss_pred             HHHHH
Q 028329          172 LVLKI  176 (210)
Q Consensus       172 l~~~~  176 (210)
                      |++.+
T Consensus       161 l~~~i  165 (167)
T d1z0ja1         161 ISRRI  165 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99876

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=206.45  Aligned_cols=165  Identities=45%  Similarity=0.777  Sum_probs=145.1

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ++.+||+++|++|||||||+++|.++.+...+. +.+.+.....+..++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            578999999999999999999999988866554 7777777888889999999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      +|||.++++|+..+.. |+..+.... ..++|++||+||+|+.+.+....+....+....+.++++|||++|.|++++|.
T Consensus        82 ~v~d~~~~~S~~~~~~-~~~~i~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~  159 (175)
T d2f9la1          82 LVYDIAKHLTYENVER-WLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFK  159 (175)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEECCCcccchhHHH-HHHHHHHhc-CCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHH
Confidence            9999999999999998 666666544 35799999999999987777777777888888999999999999999999999


Q ss_pred             HHHHHHHc
Q 028329          171 ELVLKILD  178 (210)
Q Consensus       171 ~l~~~~~~  178 (210)
                      ++++.+.+
T Consensus       160 ~l~~~i~~  167 (175)
T d2f9la1         160 NILTEIYR  167 (175)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998754

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-36  Score=214.52  Aligned_cols=168  Identities=38%  Similarity=0.682  Sum_probs=146.4

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECC----------eEEEEEEEeCCCccccccchh
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGG----------KKLKLAIWDTAGQERFRTLTS   80 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~l~D~~g~~~~~~~~~   80 (210)
                      ++.+||+++|++|||||||+++|+++.+...+. +.+.++....+.+++          ..+.+.+||++|++.+..++.
T Consensus         3 d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~   82 (186)
T d2f7sa1           3 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT   82 (186)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHH
Confidence            467999999999999999999999988876554 556555555554432          357899999999999999999


Q ss_pred             hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccC
Q 028329           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK  160 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  160 (210)
                      .+++++|++|+|||++++.+++.+.. |...+.........|++||+||.|+...+.+..+++..++..+++++++|||+
T Consensus        83 ~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak  161 (186)
T d2f7sa1          83 AFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA  161 (186)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHH-HHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTT
T ss_pred             HHHhcCCEEEEEEeccccccceeeee-ccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCC
Confidence            99999999999999999999999988 77777665566778999999999998888899999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCC
Q 028329          161 TRVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~~  180 (210)
                      +|.|++++|++|++.+.++.
T Consensus       162 ~~~~i~e~f~~l~~~i~~k~  181 (186)
T d2f7sa1         162 TGQNVEKAVETLLDLIMKRM  181 (186)
T ss_dssp             TTBTHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999987654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-34  Score=203.27  Aligned_cols=165  Identities=43%  Similarity=0.771  Sum_probs=138.3

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-C-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-P-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      +..+||+++|+++||||||+++|+.+.+.... + +.+.++....+..++..+.+.+|||+|++.+..++..+++++|++
T Consensus         4 d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~   83 (170)
T d2g6ba1           4 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL   83 (170)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred             ceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCcee
Confidence            45799999999999999999999998875443 3 567788888888999999999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  169 (210)
                      ++|||+++++++..+..+|......  .....|+++|+||.|+.....+..+++..++...+++++++||++|.|++++|
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f  161 (170)
T d2g6ba1          84 LLLYDVTNKASFDNIQAWLTEIHEY--AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF  161 (170)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEecCCcccchhhhhhhhhhhhhc--cCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence            9999999999999999844444333  34578999999999998888889999999999999999999999999999999


Q ss_pred             HHHHHHHHc
Q 028329          170 EELVLKILD  178 (210)
Q Consensus       170 ~~l~~~~~~  178 (210)
                      ++|++.+.+
T Consensus       162 ~~l~~~i~k  170 (170)
T d2g6ba1         162 TAIAKELKR  170 (170)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHcCC
Confidence            999998753

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-34  Score=204.41  Aligned_cols=170  Identities=62%  Similarity=0.971  Sum_probs=152.1

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      -..+||+++|++|||||||+++|.++.+...+. +.+.+.....+.+++..+.+.+||++|++.+..++..++..+|+++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            356999999999999999999999998866655 7777777778889999999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  170 (210)
                      +|||++++.++..+.. |+..+.........|+++++||.|. ..+.+..+++..++..++++++++||++|.|++++|+
T Consensus        85 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~i~~~~nk~d~-~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~  162 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFE  162 (177)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHTTCCSCSCCEEEEEEECTTS-SSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEECCCccccccchh-hhhhhcccccccceeeEEEeecccc-ccccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999988 7777776666778999999999996 4566778889999999999999999999999999999


Q ss_pred             HHHHHHHcCCCcc
Q 028329          171 ELVLKILDTPSLL  183 (210)
Q Consensus       171 ~l~~~~~~~~~~~  183 (210)
                      ++++.+.+++...
T Consensus       163 ~l~~~l~~~p~l~  175 (177)
T d1x3sa1         163 ELVEKIIQTPGLW  175 (177)
T ss_dssp             HHHHHHHTSGGGT
T ss_pred             HHHHHHccCcccc
Confidence            9999999887654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.4e-35  Score=208.46  Aligned_cols=168  Identities=48%  Similarity=0.891  Sum_probs=121.7

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      ..++.+||+++|+++||||||+++|+++.+...+. +.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         2 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~   81 (173)
T d2fu5c1           2 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   81 (173)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             cccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCE
Confidence            35788999999999999999999999888765544 77778888888999999999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  168 (210)
                      +|+|||++++.++..+.. |...+.. ....+.|+++|+||.|+........+++..++...++++++|||++|.|++++
T Consensus        82 ~i~v~d~~~~~s~~~~~~-~~~~~~~-~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  159 (173)
T d2fu5c1          82 IMLVYDITNEKSFDNIRN-WIRNIEE-HASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENA  159 (173)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHH-HSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHH
T ss_pred             EEEEEECCChhhHHHHHH-HHHHhhh-hccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999988 5565543 34667999999999999887788888889999999999999999999999999


Q ss_pred             HHHHHHHHHcC
Q 028329          169 FEELVLKILDT  179 (210)
Q Consensus       169 ~~~l~~~~~~~  179 (210)
                      |.+|++.+.++
T Consensus       160 f~~l~~~i~~k  170 (173)
T d2fu5c1         160 FFTLARDIKAK  170 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=205.44  Aligned_cols=167  Identities=26%  Similarity=0.361  Sum_probs=140.8

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCC--CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc-cchhhcccCccEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEE--LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-TLTSSYYRGAQGI   89 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~~   89 (210)
                      ..+||+++|++|||||||+++|++..+..  ..++.+.+.....+.+++..+.+.+||+++..... -.+..+++.+|++
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~   81 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeecccccccccccccccccccccee
Confidence            46999999999999999999999876543  33366667777888899999999999987643222 2466778999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  169 (210)
                      ++|||++++++++.+.. |...+.......++|++||+||+|+...+.+..++++.++..++++|++|||++|.|++++|
T Consensus        82 ilvfd~t~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f  160 (172)
T d2g3ya1          82 LIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF  160 (172)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             eeeecccccchhhhhhh-hhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHH
Confidence            99999999999999988 76666655556789999999999998888888999999999999999999999999999999


Q ss_pred             HHHHHHHHcCC
Q 028329          170 EELVLKILDTP  180 (210)
Q Consensus       170 ~~l~~~~~~~~  180 (210)
                      ++|++.+..++
T Consensus       161 ~~l~~~i~~rr  171 (172)
T d2g3ya1         161 EGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHcc
Confidence            99999987654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-35  Score=208.43  Aligned_cols=163  Identities=33%  Similarity=0.575  Sum_probs=138.0

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||+++|+.+.+...+. +.+.++....+..++..+.+.+||++|+..+...+..+++++|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            4899999999999999999999988876554 777788888888899999999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  172 (210)
                      ||+++++||+++.. |+..+....  .++|+++|+||+|+......  ++...++...++++++|||++|.|++++|.+|
T Consensus        83 ~d~~~~~Sf~~~~~-~~~~~~~~~--~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  157 (170)
T d1i2ma_          83 FDVTSRVTYKNVPN-WHRDLVRVC--ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  157 (170)
T ss_dssp             EETTSGGGGTTHHH-HHHHHHHHH--CSCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHH
T ss_pred             cccccccccchhHH-HHHHHhhcc--CCCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999998 666665543  57999999999999765433  34457778889999999999999999999999


Q ss_pred             HHHHHcCCC
Q 028329          173 VLKILDTPS  181 (210)
Q Consensus       173 ~~~~~~~~~  181 (210)
                      .+.+++++.
T Consensus       158 ~~~l~~~~~  166 (170)
T d1i2ma_         158 ARKLIGDPN  166 (170)
T ss_dssp             HHHHHTCTT
T ss_pred             HHHHccCCC
Confidence            999987654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-33  Score=202.75  Aligned_cols=165  Identities=30%  Similarity=0.511  Sum_probs=142.5

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      .+.+||+++|++|||||||+++|+.+.+...+. +.+ ......+..++..+.+.+||++|+..+...+..+++.+|+++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            467999999999999999999999999877665 444 455566788999999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhC-CcEEEE
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYG-CLFIEC  157 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  157 (210)
                      +|||+++.++|+++..+|...+..+  ..++|++||+||+|+...            ......++..+++.++ ++|++|
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~  159 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  159 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHh--CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEc
Confidence            9999999999999988777777664  457899999999998543            2345667788888877 689999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcC
Q 028329          158 SAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       158 sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                      ||++|.||+++|.+|++.++..
T Consensus       160 SAk~~~~V~e~F~~l~~~il~p  181 (183)
T d1mh1a_         160 SALTQRGLKTVFDEAIRAVLCP  181 (183)
T ss_dssp             CTTTCTTHHHHHHHHHHHHSCC
T ss_pred             CCCCCcCHHHHHHHHHHHHcCC
Confidence            9999999999999999998654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-33  Score=198.98  Aligned_cols=159  Identities=38%  Similarity=0.671  Sum_probs=140.6

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCcccccc-chhhcccCccEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT-LTSSYYRGAQGII   90 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i   90 (210)
                      +.+||+++|++|||||||+++|..+.+...++ +.+................+.+||++|...+.. .+..+++++|+++
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            46899999999999999999999998876666 777777777888899999999999999777655 4667889999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCC---CCCHHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT---RVNVQQ  167 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~---~~~i~~  167 (210)
                      +|||++++++|+.+.. |+..+..+....++|++|||||+|+..++.+..++++.++..+++++++|||++   +.||++
T Consensus        81 lv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e  159 (165)
T d1z06a1          81 FVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEA  159 (165)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHH
T ss_pred             EEEEeehhhhhhhhhh-hhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHH
Confidence            9999999999999988 777777666677899999999999988888899999999999999999999987   569999


Q ss_pred             HHHHH
Q 028329          168 CFEEL  172 (210)
Q Consensus       168 ~~~~l  172 (210)
                      +|.+|
T Consensus       160 ~F~~l  164 (165)
T d1z06a1         160 IFMTL  164 (165)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99887

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-33  Score=198.17  Aligned_cols=163  Identities=55%  Similarity=0.873  Sum_probs=139.7

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||+++|+.+.+...+ ++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            589999999999999999999999887665 4888888888899999999999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL  172 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l  172 (210)
                      ||++++.+++.+.. |...+.. ......|++++++|.|+. .+....+++..++..+++++++|||++|.|++++|++|
T Consensus        82 ~d~~~~~s~~~~~~-~~~~~~~-~~~~~~~~i~~~~k~d~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l  158 (166)
T d1g16a_          82 YDITDERTFTNIKQ-WFKTVNE-HANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  158 (166)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHH-HSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             EECCCccCHHHHHh-hhhhhhc-cccCcceeeeecchhhhh-hhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHH
Confidence            99999999999988 5444444 345567889999999974 45566778899999999999999999999999999999


Q ss_pred             HHHHHcC
Q 028329          173 VLKILDT  179 (210)
Q Consensus       173 ~~~~~~~  179 (210)
                      ++.+.++
T Consensus       159 ~~~i~~k  165 (166)
T d1g16a_         159 AKLIQEK  165 (166)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9988764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-33  Score=200.41  Aligned_cols=164  Identities=26%  Similarity=0.510  Sum_probs=142.2

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      .+||+++|++|||||||+++|+.+.+.+.+.+.........+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence            57999999999999999999999998776654334555666778899999999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-cEEEEccC
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYGC-LFIECSAK  160 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~  160 (210)
                      |+++++||+.+..+|...+...  ..++|+++||||+|+..            .+.+..+++..+++..+. .|++|||+
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~--~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk  159 (179)
T d1m7ba_          82 DISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  159 (179)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTT
T ss_pred             ecccCCCHHHHHHHHHHHHhcc--CCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCC
Confidence            9999999999998777777653  45799999999999843            456788889999998875 79999999


Q ss_pred             CCC-CHHHHHHHHHHHHHcC
Q 028329          161 TRV-NVQQCFEELVLKILDT  179 (210)
Q Consensus       161 ~~~-~i~~~~~~l~~~~~~~  179 (210)
                      +|. +++++|+.+.+.++++
T Consensus       160 ~~~n~i~~~F~~~~~~~l~k  179 (179)
T d1m7ba_         160 QSENSVRDIFHVATLACVNK  179 (179)
T ss_dssp             TBHHHHHHHHHHHHHHHHTC
T ss_pred             CCCcCHHHHHHHHHHHHhcC
Confidence            998 5999999999998764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-33  Score=198.68  Aligned_cols=162  Identities=44%  Similarity=0.709  Sum_probs=143.0

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ..+||+++|++|||||||+++|.++.+...+. +.+.++....+..++..+.+.+||++|.+.+..++..++..+|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            46899999999999999999999999877655 77888888888999999999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC---CceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES---ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  168 (210)
                      |||++++.++..+.. |...+... .....|+++++||.|+..   .+.+..+++..++...+++|++|||++|.|++++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~  159 (170)
T d1ek0a_          82 VYDVTKPQSFIKARH-WVKELHEQ-ASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV  159 (170)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred             EEeCCcccchhhhhh-hhhhhccc-cccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHH
Confidence            999999999999998 55444432 345789999999999843   4677888999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028329          169 FEELVLKI  176 (210)
Q Consensus       169 ~~~l~~~~  176 (210)
                      |.+|++.+
T Consensus       160 F~~i~~~i  167 (170)
T d1ek0a_         160 FLGIGEKI  167 (170)
T ss_dssp             HHHHHTTS
T ss_pred             HHHHHHHh
Confidence            99988764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-32  Score=194.82  Aligned_cols=165  Identities=40%  Similarity=0.726  Sum_probs=142.9

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII   90 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (210)
                      ...+||+|+|++|||||||+++|..+.+...+. +.+.+........++..+.+.+||++|...+...+...+..+|+++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            456899999999999999999999998876665 7777887888888999999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhhc---cCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEEEEccCCCCCHH
Q 028329           91 MVYDVTRRDTFTNLSDVWAKEIDLYS---TNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQ  166 (210)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~  166 (210)
                      +++|.+++.+++.+.. |...+....   ...++|+++|+||.|+. ++.+..+++..++++.+ ++|++|||++|.||+
T Consensus        84 ~~~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilVgnK~Dl~-~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~  161 (174)
T d1wmsa_          84 LTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  161 (174)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             EEEeeecccccchhhh-HHHHHHHHhccccCCCceEEEeccccchh-hccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHH
Confidence            9999999999999888 776665432   23568999999999985 46778888999998864 789999999999999


Q ss_pred             HHHHHHHHHHHc
Q 028329          167 QCFEELVLKILD  178 (210)
Q Consensus       167 ~~~~~l~~~~~~  178 (210)
                      ++|++|++.++.
T Consensus       162 e~f~~l~~~il~  173 (174)
T d1wmsa_         162 AAFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999998864

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6e-33  Score=197.65  Aligned_cols=166  Identities=37%  Similarity=0.689  Sum_probs=127.7

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      .+||+++|++|||||||+++|+++.+...+. +.+.+........ +.....+.+||++|++.+...+..+++.+|++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            5899999999999999999999988876554 5555555544443 4455779999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCCc-eecHHHHHHHHHHhC-CcEEEEccCCCCCHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYST---NQDCIKLLVGNKVDKESER-VVTKKEGINFAREYG-CLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~  166 (210)
                      |||++++.+|+.+.. |...+.....   ..++|++|++||+|+...+ .+..+++..++...+ +++++|||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~  160 (175)
T d1ky3a_          82 VYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD  160 (175)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHH
T ss_pred             Eeecccccccchhhh-cchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Confidence            999999999999887 7776654332   3478999999999997654 367778888888886 689999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 028329          167 QCFEELVLKILDTP  180 (210)
Q Consensus       167 ~~~~~l~~~~~~~~  180 (210)
                      ++|++|.+.++++.
T Consensus       161 e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         161 TAFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999887653

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.8e-33  Score=199.73  Aligned_cols=167  Identities=36%  Similarity=0.635  Sum_probs=143.3

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+|+|.+|||||||+++|+++.+...+. +.+.+.....+...+..+.+.+||++|...+...+...+..+|+++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            4899999999999999999999999876655 788888888889999999999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-hCCcEEEEccCCCCCHHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYST---NQDCIKLLVGNKVDKESERVVTKKEGINFARE-YGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i~~~  168 (210)
                      +|.++..++..+.. |+..+.....   ..++|+++|+||+|+... .+..++...++.. .++++++|||++|.||+++
T Consensus        82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~  159 (184)
T d1vg8a_          82 FDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKIDLENR-QVATKRAQAWCYSKNNIPYFETSAKEAINVEQA  159 (184)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-CSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHH
T ss_pred             ecccchhhhhcchh-hHHHHHHHhccccccCCCEEEEEEeeccccc-chhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHH
Confidence            99999999999887 7776655432   346899999999998654 4555566666654 5789999999999999999


Q ss_pred             HHHHHHHHHcCCCc
Q 028329          169 FEELVLKILDTPSL  182 (210)
Q Consensus       169 ~~~l~~~~~~~~~~  182 (210)
                      |++|++.+.+++..
T Consensus       160 f~~l~~~i~~~~~~  173 (184)
T d1vg8a_         160 FQTIARNALKQETE  173 (184)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccc
Confidence            99999998876543

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.98  E-value=2.3e-31  Score=187.60  Aligned_cols=159  Identities=24%  Similarity=0.389  Sum_probs=127.0

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      .+||+++|++|||||||+++|.+..+....++.+.....  +..  ..+.+.+||++|+..++..+..++..++++++||
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   77 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKT--LEH--RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   77 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEE--EEE--TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeee--ccc--cccceeeeecCcchhhhhHHHhhhhhhhcceeee
Confidence            589999999999999999999988876666666644432  333  4578999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEEccCCCCCHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~~  168 (210)
                      |+++..++......|...+.. ....++|++||+||+|++........  ....     ....+++++|||++|.|++++
T Consensus        78 d~~d~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  154 (165)
T d1ksha_          78 DSADRQRMQDCQRELQSLLVE-ERLAGATLLIFANKQDLPGALSCNAI--QEALELDSIRSHHWRIQGCSAVTGEDLLPG  154 (165)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCCHHHH--HHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             ecccchhHHHHHHhhhhhhhh-cccCCCceEEEEeccccccccCHHHH--HHHHHhhhhhcCCCEEEEEECCCCCCHHHH
Confidence            999999999998867666654 44567999999999999754433322  2221     112456899999999999999


Q ss_pred             HHHHHHHHHcC
Q 028329          169 FEELVLKILDT  179 (210)
Q Consensus       169 ~~~l~~~~~~~  179 (210)
                      |+||++.+.++
T Consensus       155 ~~~l~~~i~~r  165 (165)
T d1ksha_         155 IDWLLDDISSR  165 (165)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHcC
Confidence            99999988653

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4.6e-31  Score=187.66  Aligned_cols=160  Identities=23%  Similarity=0.352  Sum_probs=132.4

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   93 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (210)
                      .+||+++|+++||||||++++.++.+....++.+..+ ...+.+++..+.+.+||++|+..+     .+++.+|++|+||
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilVf   78 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFVF   78 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEE-EEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeE-EEEeecCceEEEEEEeeccccccc-----ccccccceeEEEe
Confidence            5999999999999999999999999876655555444 566788999999999999997654     3677899999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhhc--cCCCCcEEEEEeCCCCCC--CceecHHHHHHHHHH-hCCcEEEEccCCCCCHHHH
Q 028329           94 DVTRRDTFTNLSDVWAKEIDLYS--TNQDCIKLLVGNKVDKES--ERVVTKKEGINFARE-YGCLFIECSAKTRVNVQQC  168 (210)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~--~~~~~piivv~nK~D~~~--~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i~~~  168 (210)
                      |+++++||+++.. |...+....  ....+|+++|+||.|++.  .+.+..+++..++.. .+++|++|||+++.|++++
T Consensus        79 d~~~~~Sf~~~~~-~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~  157 (175)
T d2bmja1          79 SLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRV  157 (175)
T ss_dssp             ETTCHHHHHHHHH-HHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHH
T ss_pred             ecccchhhhhhHH-HHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHH
Confidence            9999999999988 777775432  345689999999888743  455677788888655 5688999999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028329          169 FEELVLKILDTP  180 (210)
Q Consensus       169 ~~~l~~~~~~~~  180 (210)
                      |..+++.+.+.+
T Consensus       158 F~~l~~~i~~~~  169 (175)
T d2bmja1         158 FQEVAQKVVTLR  169 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999887654

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=1.1e-31  Score=191.16  Aligned_cols=160  Identities=24%  Similarity=0.341  Sum_probs=125.1

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG   88 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (210)
                      .+.++.+||+++|++|||||||+++|.++.+....++.+.+..  .+..  ..+.+.+||++|...++..+..++..+|+
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~--~i~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   86 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK--SVQS--QGFKLNVWDIGGQRKIRPYWRSYFENTDI   86 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEE--EEEE--TTEEEEEEECSSCGGGHHHHHHHHTTCSE
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEE--Eecc--CCeeEeEeeccccccchhHHHHHhhccce
Confidence            3455679999999999999999999999888665555554433  3333  34789999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHH-----HHHhCCcEEEEccCCCC
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINF-----AREYGCLFIECSAKTRV  163 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~sa~~~~  163 (210)
                      +++|||+++..++..+..+|.... ......++|++|++||+|+......  ....+.     +....+++++|||++|.
T Consensus        87 ii~v~d~~d~~s~~~~~~~~~~~~-~~~~~~~~pillv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~SA~tg~  163 (176)
T d1fzqa_          87 LIYVIDSADRKRFEETGQELTELL-EEEKLSCVPVLIFANKQDLLTAAPA--SEIAEGLNLHTIRDRVWQIQSCSALTGE  163 (176)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHT-TCGGGTTCCEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             eEEeeccccccchhhhhhhhhhhh-hhhccCCCeEEEEEEeccccccccH--HHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence            999999999999999988444444 4455667999999999999654322  121211     12234569999999999


Q ss_pred             CHHHHHHHHHHH
Q 028329          164 NVQQCFEELVLK  175 (210)
Q Consensus       164 ~i~~~~~~l~~~  175 (210)
                      |++++|+||++.
T Consensus       164 gv~e~~~~l~~~  175 (176)
T d1fzqa_         164 GVQDGMNWVCKN  175 (176)
T ss_dssp             THHHHHHHHHHT
T ss_pred             CHHHHHHHHHhc
Confidence            999999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=2e-32  Score=196.12  Aligned_cols=163  Identities=23%  Similarity=0.355  Sum_probs=124.9

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI   89 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (210)
                      ...+.+||+++|++|||||||+++|..+.+....++.+......  ..  ..+.+.+||++|+..+...+..++..+|++
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~--~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETL--SY--KNLKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEE--EE--TTEEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEE--ee--CCEEEEEEecccccccchhHHhhhccceeE
Confidence            34567999999999999999999999888776666666554433  22  357899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHH-----HHHhCCcEEEEccCCCCC
Q 028329           90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINF-----AREYGCLFIECSAKTRVN  164 (210)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~sa~~~~~  164 (210)
                      ++|||+++..++.....+|...+.. ....+.|++||+||+|++...  ..+++...     +...++++++|||++|.|
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~-~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~g  165 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQE-EELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAIKGEG  165 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTS-STTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBT
T ss_pred             EEEeeecccccchhHHHHHHHHHHh-hccCCcceEEEEEeecccccc--CHHHHHHHHHHHHHhhCCCEEEEEECCCCCC
Confidence            9999999999999988845454443 445679999999999986432  22222221     223356799999999999


Q ss_pred             HHHHHHHHHHHHHcC
Q 028329          165 VQQCFEELVLKILDT  179 (210)
Q Consensus       165 i~~~~~~l~~~~~~~  179 (210)
                      ++++|+||.+.+.++
T Consensus       166 v~e~~~~l~~~i~~~  180 (182)
T d1moza_         166 ITEGLDWLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999998654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=2.3e-31  Score=187.52  Aligned_cols=155  Identities=23%  Similarity=0.374  Sum_probs=122.8

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      .+||+++|++|||||||+++|..+.+...+ +|.+.++..  +..  ..+.+.+||+||+..+...+..++..+|++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeee--eee--eeEEEEEeeccccccccccccccccccchhhcc
Confidence            589999999999999999999998876544 466655443  333  357899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHH-----HHHhCCcEEEEccCCCCCHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINF-----AREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~sa~~~~~i~~  167 (210)
                      ||+++.+++.....+|...+.. ....++|++||+||.|+.....  ..+....     +...+++++++||++|.|+++
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~~pi~lv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e  154 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDK-PQLQGIPVLVLGNKRDLPGALD--EKELIEKMNLSAIQDREICCYSISCKEKDNIDI  154 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTC-GGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             cccccccccchhhhhhhhhhhh-hcccCCcEEEEEeccccchhhh--HHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHH
Confidence            9999999999998855555544 4466799999999999864432  2222221     223355799999999999999


Q ss_pred             HHHHHHHH
Q 028329          168 CFEELVLK  175 (210)
Q Consensus       168 ~~~~l~~~  175 (210)
                      +|+||++.
T Consensus       155 ~~~~l~~~  162 (164)
T d1zd9a1         155 TLQWLIQH  162 (164)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            99999874

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=2e-31  Score=189.43  Aligned_cols=158  Identities=25%  Similarity=0.377  Sum_probs=123.7

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...+||+++|++|||||||+++|..+.+....++.+.....    .....+.+.+||+||...++..+..++..+|++++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   85 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   85 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEE----EEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEE----eeccceeeEEecCCCcchhhhHHHhhhcccceEEE
Confidence            45699999999999999999999988776555555544332    22345789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH-----HHHHhCCcEEEEccCCCCCHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN-----FAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~sa~~~~~i~  166 (210)
                      |+|+++.+++..+..+|...+.. ....+.|++|++||+|++.....  .++..     .+...++.+++|||++|+|++
T Consensus        86 v~D~s~~~~~~~~~~~l~~~~~~-~~~~~~piiiv~NK~Dl~~~~~~--~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~  162 (173)
T d1e0sa_          86 VVDCADRDRIDEARQELHRIIND-REMRDAIILIFANKQDLPDAMKP--HEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  162 (173)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTS-GGGTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEecccchhHHHHHHHHHHHhhh-cccccceeeeeeecccccccccH--HHHHHHHHHHHHHhCCCEEEEeeCCCCcCHH
Confidence            99999999999998855555544 34567999999999999644322  22222     222335569999999999999


Q ss_pred             HHHHHHHHHH
Q 028329          167 QCFEELVLKI  176 (210)
Q Consensus       167 ~~~~~l~~~~  176 (210)
                      ++|+||.+.+
T Consensus       163 e~~~~l~~~~  172 (173)
T d1e0sa_         163 EGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999998764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.96  E-value=3.7e-29  Score=174.90  Aligned_cols=157  Identities=22%  Similarity=0.401  Sum_probs=122.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (210)
                      +||+++|++|||||||+++|+++.+...++......    ...+...+.+.+||++|...+...+...+..++++++++|
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d   76 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCE----EEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEE----EEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEE
Confidence            589999999999999999999988766555333222    2334466789999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec---HHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329           95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT---KKEGINFAREYGCLFIECSAKTRVNVQQCFEE  171 (210)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  171 (210)
                      ++++.++..+..++.+.+. ......+|+++++||.|+.......   ......++...++++++|||++|.|++++|+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~  155 (160)
T d1r8sa_          77 SNDRERVNEAREELMRMLA-EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (160)
T ss_dssp             TTCGGGHHHHHHHHHHHHT-CGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             ecChHHHHHHHHHHHHHHH-hhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHH
Confidence            9999999999884555444 3455678999999999986543221   11112233334677999999999999999999


Q ss_pred             HHHHH
Q 028329          172 LVLKI  176 (210)
Q Consensus       172 l~~~~  176 (210)
                      |.+++
T Consensus       156 l~~~l  160 (160)
T d1r8sa_         156 LSNQL  160 (160)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            98763

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.94  E-value=2.1e-26  Score=161.95  Aligned_cols=163  Identities=22%  Similarity=0.360  Sum_probs=126.9

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      ..+||+++|++|||||||+++|+++.+....++.+.....  ...  ..+.+.+||.+|...+...+...+...++++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVET--VTY--KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   79 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEE--EEE--TTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeeee--ecc--CceEEEEeeccccccccccchhhhhhhhhhhhh
Confidence            3589999999999999999999999987766655543332  222  346788999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee---cHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329           93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV---TKKEGINFAREYGCLFIECSAKTRVNVQQCF  169 (210)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  169 (210)
                      +|+.+..++......+...+.. ......|+++++||.|+......   .......++...+++++++||++|.|++++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~  158 (169)
T d1upta_          80 VDSCDRDRIGISKSELVAMLEE-EELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM  158 (169)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred             hhhhhcchhhhccchhhhhhhh-hccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence            9999999988888845444443 45567899999999999654322   1222222334456789999999999999999


Q ss_pred             HHHHHHHHcCC
Q 028329          170 EELVLKILDTP  180 (210)
Q Consensus       170 ~~l~~~~~~~~  180 (210)
                      ++|.+.+.+++
T Consensus       159 ~~l~~~l~~k~  169 (169)
T d1upta_         159 EWLVETLKSRQ  169 (169)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHHhCC
Confidence            99999886653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.94  E-value=3.6e-27  Score=167.58  Aligned_cols=158  Identities=22%  Similarity=0.336  Sum_probs=119.0

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      ...+||+|+|.+|||||||+++|.++++....++.+......  ..  ....+.+||+++...+...+...+..++++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~   88 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI--VI--NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV   88 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEE--EE--TTEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEE--ee--cceEEEEeccccccccccchhhhhccceeeee
Confidence            345899999999999999999999988876555554333322  22  34678999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEEccCCCCCHH
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~  166 (210)
                      ++|.++..++..... +.............|+++|+||+|++....  ..++....     ...+++++++||++|+|++
T Consensus        89 v~d~~d~~~~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          89 VVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEETTCTTTHHHHHH-HHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             ecccccccchhhhhh-hhhhhhhcccccceEEEEEEEcccccccCc--HHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            999999999988877 344444445556899999999999865433  22222222     2234579999999999999


Q ss_pred             HHHHHHHHHH
Q 028329          167 QCFEELVLKI  176 (210)
Q Consensus       167 ~~~~~l~~~~  176 (210)
                      ++|+||.+.+
T Consensus       166 e~~~~L~~~l  175 (177)
T d1zj6a1         166 QGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999876

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=2.7e-26  Score=163.32  Aligned_cols=166  Identities=18%  Similarity=0.151  Sum_probs=114.4

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------chhhcc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT--------LTSSYY   83 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~   83 (210)
                      .+.-.|+|+|.+|||||||+++|++..........+++..............+.+||+||......        .....+
T Consensus         3 ~~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1wf3a1           3 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL   82 (178)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhccccccccc
Confidence            455679999999999999999999887554444343333333322222345789999999644322        233457


Q ss_pred             cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEEEEccCCC
Q 028329           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-CLFIECSAKTR  162 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~  162 (210)
                      .++|++++|+|++++.+...  ..|...++..  ..+.|+++|+||+|+.....   +....+....+ ..++++||+++
T Consensus        83 ~~ad~il~v~D~~~~~~~~~--~~i~~~l~~~--~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~iSA~~~  155 (178)
T d1wf3a1          83 ADVNAVVWVVDLRHPPTPED--ELVARALKPL--VGKVPILLVGNKLDAAKYPE---EAMKAYHELLPEAEPRMLSALDE  155 (178)
T ss_dssp             SSCSEEEEEEETTSCCCHHH--HHHHHHHGGG--TTTSCEEEEEECGGGCSSHH---HHHHHHHHTSTTSEEEECCTTCH
T ss_pred             ccccceeeeechhhhhcccc--cchhhheecc--ccchhhhhhhcccccccCHH---HHHHHHHhhcccCceEEEecCCC
Confidence            78999999999988755432  3356666543  34689999999999865432   22233334444 46899999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCccc
Q 028329          163 VNVQQCFEELVLKILDTPSLLA  184 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~~~~~~~~  184 (210)
                      .|+++++++|.+.+.+.+..++
T Consensus       156 ~gi~~L~~~i~~~lpe~p~~~p  177 (178)
T d1wf3a1         156 RQVAELKADLLALMPEGPFFYP  177 (178)
T ss_dssp             HHHHHHHHHHHTTCCBCCCSSC
T ss_pred             CCHHHHHHHHHHhCCCCCCCCC
Confidence            9999999999988766655443

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=3.4e-25  Score=154.96  Aligned_cols=152  Identities=22%  Similarity=0.312  Sum_probs=119.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   95 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (210)
                      ||+++|++|||||||+++|.++.+....++.+.+..    ........+.+||++|...+...+...+..++++++++|.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSE----ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA   77 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEE----EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEE----EeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccc
Confidence            899999999999999999999998776666664443    3333456688999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH------------HhCCcEEEEccCCCC
Q 028329           96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR------------EYGCLFIECSAKTRV  163 (210)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~sa~~~~  163 (210)
                      ++..++..... |...........+.|+++++||.|++...  ...+......            ...+.+++|||++|+
T Consensus        78 ~~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          78 ADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPNAV--SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TCGGGHHHHHH-HHHHHHTCTTTTTCCEEEEEECTTSSSCC--CHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             cchhhhhhhhH-HHHhhhhhhccCCceEEEEeccccccccC--CHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            99999988887 44444444566789999999999986432  2222222221            123468999999999


Q ss_pred             CHHHHHHHHHH
Q 028329          164 NVQQCFEELVL  174 (210)
Q Consensus       164 ~i~~~~~~l~~  174 (210)
                      |++++|+||.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999864

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1e-25  Score=157.66  Aligned_cols=152  Identities=22%  Similarity=0.219  Sum_probs=108.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------chhhcccCc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT--------LTSSYYRGA   86 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~   86 (210)
                      +||+++|.+|||||||+++|++.........++.+.......+......+.+||++|......        .....+..+
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   81 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQA   81 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhc
Confidence            799999999999999999999877654333333333322223323345688999999533322        233456789


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  166 (210)
                      |++++++|..+..++..... |...+...  ..++|+++|+||+|+........+       ..+.+++++||+++.|++
T Consensus        82 d~~i~~~d~~~~~~~~~~~~-~~~~~~~~--~~~~~iilv~NK~Dl~~~~~~~~~-------~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          82 DRVLFMVDGTTTDAVDPAEI-WPEFIARL--PAKLPITVVRNKADITGETLGMSE-------VNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             SEEEEEEETTTCCCCSHHHH-CHHHHHHS--CTTCCEEEEEECHHHHCCCCEEEE-------ETTEEEEECCTTTCTTHH
T ss_pred             cccceeeccccccchhhhhh-hhhhhhhc--ccccceeeccchhhhhhhHHHHHH-------hCCCcEEEEECCCCCCHH
Confidence            99999999999888777765 66666543  346899999999998544322111       235679999999999999


Q ss_pred             HHHHHHHHHH
Q 028329          167 QCFEELVLKI  176 (210)
Q Consensus       167 ~~~~~l~~~~  176 (210)
                      +++++|.+.+
T Consensus       152 ~L~~~l~~~l  161 (161)
T d2gj8a1         152 VLRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhC
Confidence            9999998753

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.92  E-value=2.8e-24  Score=153.22  Aligned_cols=158  Identities=18%  Similarity=0.282  Sum_probs=114.2

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM   91 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (210)
                      .+..||+++|++|||||||+++|+++.+....++.+.+....  ..++  ..+.+||+.+...+...+...+...+++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEEL--TIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   86 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEE--EETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEE--Eecc--cccccccccchhhhhhHHhhhhcccceeee
Confidence            456899999999999999999999998877666666555433  3333  467889999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-----------------hCCcE
Q 028329           92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-----------------YGCLF  154 (210)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~  154 (210)
                      ++|+++...+......+...... ....+.|+++++||.|++..  ....++......                 .++.+
T Consensus        87 ~~d~~d~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~K~D~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          87 LVDCADHERLLESKEELDSLMTD-ETIANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTC-GGGTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeccCccchHHHHHHHHHhhcc-cccCCCceEEEEeccCcccc--CCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            99999999988887745444433 34567999999999998643  233333333321                 13458


Q ss_pred             EEEccCCCCCHHHHHHHHHHHH
Q 028329          155 IECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       155 ~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                      ++|||++|+|++++|+||.+.+
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999998653

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=3.1e-24  Score=154.34  Aligned_cols=158  Identities=20%  Similarity=0.197  Sum_probs=114.4

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      +.+||+++|+.|||||||+++|..+.++.    .+.  ..  ..++...+.+.+||++|+..+...|..+++.++++++|
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t----~~~--~~--~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAG----TGI--VE--THFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCC----CSE--EE--EEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCC----ccE--EE--EEEEeeeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            36899999999999999999998776643    222  12  23344567899999999999999999999999999999


Q ss_pred             EeCCCcccHH----------HHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC---------------ceecHHHHHHHH
Q 028329           93 YDVTRRDTFT----------NLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE---------------RVVTKKEGINFA  147 (210)
Q Consensus        93 ~d~~~~~s~~----------~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~---------------~~~~~~~~~~~~  147 (210)
                      +|+++.+++.          .....|...+.. ......|+++++||.|+...               ......++..+.
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~-~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNN-KWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTC-GGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcc-cccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            9999887653          333435555554 34567899999999996210               011112221111


Q ss_pred             ----HH-------hCCcEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329          148 ----RE-------YGCLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       148 ----~~-------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                          ..       ..+.+++|||+++.||+++|+.+.+.++++
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence                11       123477899999999999999999888653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=9.2e-25  Score=157.72  Aligned_cols=160  Identities=18%  Similarity=0.155  Sum_probs=120.0

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      +.+||+++|+.|||||||+++|..+.+. +.||.|....    .+....+.+.+||++|+..+...|..++..+++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~-~~pTiG~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS-GVPTTGIIEY----PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS-CCCCCSCEEE----EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC-CCceeeEEEE----EEeccceeeeeccccccccccccccccccccceeeEe
Confidence            3689999999999999999999988774 5577775543    2334567799999999999999999999999999999


Q ss_pred             EeCCCccc----------HHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc----------------eecHHHHHHH
Q 028329           93 YDVTRRDT----------FTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER----------------VVTKKEGINF  146 (210)
Q Consensus        93 ~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~----------------~~~~~~~~~~  146 (210)
                      +|+++..+          +......|...+... ...+.|+++++||.|+...+                ..+......+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~-~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYP-WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCG-GGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhh-hccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            99987643          334444477777653 34678999999999973111                1122222222


Q ss_pred             HHH----------hCCcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329          147 ARE----------YGCLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       147 ~~~----------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      ...          ..+.+++|||+++.|++++|+.+.+.+++
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence            221          12347899999999999999999988864

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=1.5e-23  Score=149.24  Aligned_cols=160  Identities=20%  Similarity=0.108  Sum_probs=105.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc-------cchhhcccCccE
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-------TLTSSYYRGAQG   88 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~d~   88 (210)
                      .|+++|.+|||||||+|+|++...........++..............+.+||+||.....       ......+..+++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV   82 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence            4899999999999999999977653322222222222223334344568899999943211       122344678999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329           89 IIMVYDVTRRDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ  167 (210)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  167 (210)
                      +++++|..... ...... +...+... ....++|+++|+||+|+......  +.........+.+++.+||++|.|+++
T Consensus        83 ~~~~~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~--~~~~~~~~~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          83 LLYVLDAADEP-LKTLET-LRKEVGAYDPALLRRPSLVALNKVDLLEEEAV--KALADALAREGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEEEEETTSCH-HHHHHH-HHHHHHHHCHHHHHSCEEEEEECCTTSCHHHH--HHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhhccccccc-ccchhh-hhhhhhccccccchhhhhhhhhhhhhhhHHHH--HHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence            99999986542 222222 33322211 11235799999999999654332  334555566788999999999999999


Q ss_pred             HHHHHHHHHHcC
Q 028329          168 CFEELVLKILDT  179 (210)
Q Consensus       168 ~~~~l~~~~~~~  179 (210)
                      +++.|.+.+...
T Consensus       159 L~~~i~~~l~~~  170 (180)
T d1udxa2         159 LKEALHALVRST  170 (180)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHhhc
Confidence            999998888554

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=4e-24  Score=151.00  Aligned_cols=158  Identities=20%  Similarity=0.168  Sum_probs=100.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc---------cccchhhcccCc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER---------FRTLTSSYYRGA   86 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~~~~   86 (210)
                      +|+++|++|||||||+++|++..........+.+.......+......+.+||++|...         +.......+..+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a   81 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA   81 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence            68999999999999999999877654444444444433334444456788999998321         122333446789


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  166 (210)
                      |+++++.|.+........ . +...++.    .++|+++|+||+|+.++.  ..+....+.......++++||++|.|++
T Consensus        82 d~i~~~~~~~~~~~~~~~-~-~~~~l~~----~~~pviiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~i~iSAk~g~gid  153 (171)
T d1mkya1          82 DLVLFVVDGKRGITKEDE-S-LADFLRK----STVDTILVANKAENLREF--EREVKPELYSLGFGEPIPVSAEHNINLD  153 (171)
T ss_dssp             SEEEEEEETTTCCCHHHH-H-HHHHHHH----HTCCEEEEEESCCSHHHH--HHHTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred             cEEEEeeccccccccccc-c-ccccccc----ccccccccchhhhhhhhh--hhHHHHHHHhcCCCCeEEEecCCCCCHH
Confidence            999999998876554332 2 4555543    357899999999985321  1121122222223458999999999999


Q ss_pred             HHHHHHHHHHHcCCC
Q 028329          167 QCFEELVLKILDTPS  181 (210)
Q Consensus       167 ~~~~~l~~~~~~~~~  181 (210)
                      +++++|.+.+.++..
T Consensus       154 ~L~~~i~~~l~e~~~  168 (171)
T d1mkya1         154 TMLETIIKKLEEKGL  168 (171)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCCCC
Confidence            999999999877654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=5e-23  Score=147.14  Aligned_cols=159  Identities=23%  Similarity=0.189  Sum_probs=104.2

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCccccc------------
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQERFR------------   76 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~~------------   76 (210)
                      ....+||+++|++|||||||+++|++..........+++.  ....+..++  ..+.++|+||.....            
T Consensus         5 ~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~   82 (186)
T d1mkya2           5 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSN   82 (186)
T ss_dssp             CCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccchh
Confidence            3456999999999999999999999876532222222222  222344444  357788999853322            


Q ss_pred             cchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-----C
Q 028329           77 TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-----G  151 (210)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-----~  151 (210)
                      ......+..+|++++|+|++........ . +...+..    .+.|+|+|+||+|+.........+........     .
T Consensus        83 ~~~~~~~~~~dvii~v~d~~~~~~~~~~-~-~~~~~~~----~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  156 (186)
T d1mkya2          83 YRVVDSIEKADVVVIVLDATQGITRQDQ-R-MAGLMER----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDY  156 (186)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCCCHHHH-H-HHHHHHH----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTT
T ss_pred             HHHHHHHhcCCEEEEeecccccchhhHH-H-HHHHHHH----cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCC
Confidence            2333446789999999999876543322 2 4444433    46899999999998655544444433333322     3


Q ss_pred             CcEEEEccCCCCCHHHHHHHHHHHHH
Q 028329          152 CLFIECSAKTRVNVQQCFEELVLKIL  177 (210)
Q Consensus       152 ~~~~~~sa~~~~~i~~~~~~l~~~~~  177 (210)
                      .+++++||++|.|+++++++|.+.+.
T Consensus       157 ~~i~~vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         157 SPLIFTSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             SCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            56999999999999999999977664

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=1.6e-23  Score=146.16  Aligned_cols=150  Identities=20%  Similarity=0.166  Sum_probs=100.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc---------cchhhcccC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR---------TLTSSYYRG   85 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~~~   85 (210)
                      +||+++|.+|||||||+|+|++.........++.+..............+.+||+||.....         ......+..
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK   80 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence            69999999999999999999987654444433333332222222234568899999942211         112223567


Q ss_pred             ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCH
Q 028329           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNV  165 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  165 (210)
                      +|++++|+|++++...+...-  ...+      ...++++++||.|+.....  .++... ....+.+++++||++|.|+
T Consensus        81 ad~ii~v~d~~~~~~~~~~~~--~~~~------~~~~~i~~~~k~d~~~~~~--~~~~~~-~~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          81 ADIVLFVLDASSPLDEEDRKI--LERI------KNKRYLVVINKVDVVEKIN--EEEIKN-KLGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             CSEEEEEEETTSCCCHHHHHH--HHHH------TTSSEEEEEEECSSCCCCC--HHHHHH-HHTCSTTEEEEEGGGTCCH
T ss_pred             CCEEEEEEeCCCCcchhhhhh--hhhc------ccccceeeeeeccccchhh--hHHHHH-HhCCCCcEEEEECCCCCCH
Confidence            999999999999876554432  2222      3467899999999865432  222222 2234567999999999999


Q ss_pred             HHHHHHHHHH
Q 028329          166 QQCFEELVLK  175 (210)
Q Consensus       166 ~~~~~~l~~~  175 (210)
                      ++++++|.+.
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999998763

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.89  E-value=3.8e-22  Score=141.75  Aligned_cols=161  Identities=14%  Similarity=0.117  Sum_probs=106.4

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC------CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP------TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA   86 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (210)
                      +.++|.++|++|+|||||+|+|++.......+      ..+.+..............+.++|++|+..+.......+..+
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~   83 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII   83 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhhc
Confidence            56899999999999999999999644322222      111111111111122335688899999998888888888999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH--HHHHHHHHH----hCCcEEEEccC
Q 028329           87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK--KEGINFARE----YGCLFIECSAK  160 (210)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~~~----~~~~~~~~sa~  160 (210)
                      |++++++|+++....... . ....+.    ..++|+++|+||+|+........  +....+...    .+.+++++||+
T Consensus        84 d~~ilv~d~~~g~~~~~~-~-~~~~~~----~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~  157 (179)
T d1wb1a4          84 DLALIVVDAKEGPKTQTG-E-HMLILD----HFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK  157 (179)
T ss_dssp             CEEEEEEETTTCSCHHHH-H-HHHHHH----HTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred             cccccccccccccchhhh-h-hhhhhh----hcCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence            999999999986543322 2 222332    24689999999999875443221  111222222    13579999999


Q ss_pred             CCCCHHHHHHHHHHHHHcC
Q 028329          161 TRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~  179 (210)
                      +|.|++++++.|.+.+.+.
T Consensus       158 ~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         158 TGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             TCTTHHHHHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhcCCcc
Confidence            9999999999999887654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.6e-22  Score=145.89  Aligned_cols=159  Identities=19%  Similarity=0.237  Sum_probs=107.3

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      +.+||+++|++|||||||+++|...  ....||.|...  ..+..  ....+.+||++|+..++..|..+++.+++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~f~--~~~~pTiG~~~--~~~~~--~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMRII--HGQDPTKGIHE--YDFEI--KNVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH--HSCCCCSSEEE--EEEEE--TTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcC--CCCCCeeeeEE--EEEee--eeeeeeeecccceeeecccccccccccceeEEE
Confidence            4689999999999999999999533  23345777443  33333  457789999999999999999999999999999


Q ss_pred             EeCCCccc----------HHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC----------------ceecHHHHHHH
Q 028329           93 YDVTRRDT----------FTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE----------------RVVTKKEGINF  146 (210)
Q Consensus        93 ~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----------------~~~~~~~~~~~  146 (210)
                      +|.++..+          ++.....|...+.. ....++|++|++||.|+...                .....+.+.++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  153 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNN-RVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  153 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTC-GGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhC-hhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence            99997543          34444434444443 34568999999999997311                01122233333


Q ss_pred             HHHh-----------CCcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329          147 AREY-----------GCLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       147 ~~~~-----------~~~~~~~sa~~~~~i~~~~~~l~~~~~~  178 (210)
                      ....           .+.++++||+++.+|+++|+.+.+.+.+
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~  196 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  196 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence            2221           2346789999999999999999887764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=1.7e-22  Score=144.06  Aligned_cols=152  Identities=19%  Similarity=0.198  Sum_probs=99.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc---------------ccchh
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF---------------RTLTS   80 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------------~~~~~   80 (210)
                      .|+++|.+|||||||+|+|++.... ....+++|.....+...+    +.+||+||....               .....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~-~~~~~g~T~~~~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~   76 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE   76 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCEeeccccccccc----ceecccCCceeccccccccccccchhhhhhhh
Confidence            5899999999999999999987653 344555555544444443    578999994211               11223


Q ss_pred             hcccCccEEEEEEeCCCcccHHHHH---------HHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-
Q 028329           81 SYYRGAQGIIMVYDVTRRDTFTNLS---------DVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-  150 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~---------~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-  150 (210)
                      ..++.+|++++|+|+..........         ..+...+.    ..++|+++|+||+|+..........   +.... 
T Consensus        77 ~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~----~~~~p~iiv~NK~D~~~~~~~~~~~---~~~~~~  149 (184)
T d2cxxa1          77 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR----ELDIPTIVAVNKLDKIKNVQEVINF---LAEKFE  149 (184)
T ss_dssp             HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH----HTTCCEEEEEECGGGCSCHHHHHHH---HHHHHT
T ss_pred             hcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHH----HcCCCEEEEEeeeehhhhHHHHHHH---HHHHhc
Confidence            3456789999999987543221111         11222232    2478999999999975443222211   12222 


Q ss_pred             ------CCcEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329          151 ------GCLFIECSAKTRVNVQQCFEELVLKILDT  179 (210)
Q Consensus       151 ------~~~~~~~sa~~~~~i~~~~~~l~~~~~~~  179 (210)
                            ...++++||++|.|+++++++|.+.+.++
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~  184 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER  184 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence                  12388999999999999999999988653

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=6.6e-21  Score=138.26  Aligned_cols=120  Identities=17%  Similarity=0.250  Sum_probs=90.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc-cchhhcccCccEEEEEEe
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-TLTSSYYRGAQGIIMVYD   94 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~~i~v~d   94 (210)
                      +|+++|++|||||||+++|+++.+....++.+.+.....+ .++....+.+||++|+..+. ..+..++..++++++|+|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D   80 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD   80 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence            6999999999999999999999887777766655544332 24556789999999998875 467778899999999999


Q ss_pred             CCCcccH-HHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCCc
Q 028329           95 VTRRDTF-TNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        95 ~~~~~s~-~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~~  136 (210)
                      +++..++ .....++...+... .....+|++|++||+|++...
T Consensus        81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             cccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence            9987664 34444344444332 234568999999999997543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=2.3e-22  Score=143.56  Aligned_cols=160  Identities=18%  Similarity=0.151  Sum_probs=98.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCcccccc----ch---hhcccCcc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT----LT---SSYYRGAQ   87 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~~---~~~~~~~d   87 (210)
                      .|+++|.+|||||||+|+|++........ ..+.+.......+. ....+.+||+||......    ..   ...+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD-DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS-SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEec-CCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            58999999999999999998766432222 22222222222222 223578999999532221    11   12245688


Q ss_pred             EEEEEEeCCCcccHHHHHHH--HHHHHh-hhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH--hCCcEEEEccCCC
Q 028329           88 GIIMVYDVTRRDTFTNLSDV--WAKEID-LYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE--YGCLFIECSAKTR  162 (210)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~--~~~~~~-~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~  162 (210)
                      .++++++.............  +..... ......++|+++|+||+|+.....    ....+...  .+.+++.+||++|
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~----~~~~~~~~~~~~~~v~~iSA~~g  157 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE----NLEAFKEKLTDDYPVFPISAVTR  157 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH----HHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHH----HHHHHHHHhccCCcEEEEECCCC
Confidence            89888887655432222211  111111 112234689999999999865321    22223333  3577999999999


Q ss_pred             CCHHHHHHHHHHHHHcCC
Q 028329          163 VNVQQCFEELVLKILDTP  180 (210)
Q Consensus       163 ~~i~~~~~~l~~~~~~~~  180 (210)
                      .|+++++++|.+.+.+..
T Consensus       158 ~Gi~~L~~~i~~~L~~~p  175 (185)
T d1lnza2         158 EGLRELLFEVANQLENTP  175 (185)
T ss_dssp             STTHHHHHHHHHHHTSCC
T ss_pred             CCHHHHHHHHHHhhhhCC
Confidence            999999999999885543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=1.4e-21  Score=143.28  Aligned_cols=158  Identities=19%  Similarity=0.190  Sum_probs=114.4

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   92 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (210)
                      ..+||+++|++|||||||+++|..+.+.   ||.|...  ..+.++  .+.+.+||++|+..++..|..++..+++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~~---pTiG~~~--~~~~~~--~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v   77 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHVV---LTSGIFE--TKFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFV   77 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHCC---CCCSCEE--EEEEET--TEEEEEEECCCSTTTTTGGGGGCTTCSEEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCcC---CCCCeEE--EEEEEC--cEEEEEEecCccceeccchhhhcccccceEEE
Confidence            4689999999999999999999876543   5666433  334444  46789999999999999999999999999999


Q ss_pred             EeCCCcc----------cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-------------------------
Q 028329           93 YDVTRRD----------TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-------------------------  137 (210)
Q Consensus        93 ~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-------------------------  137 (210)
                      +|.++..          ...+....|...+.. ....++|++|++||+|+..++.                         
T Consensus        78 ~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~-~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~  156 (221)
T d1azta2          78 VASSSYNMVIREDNQTNRLQEALNLFKSIWNN-RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP  156 (221)
T ss_dssp             EETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC-GGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCC
T ss_pred             EEccccccccccccchHHHHHHHHHHHHHhcC-hhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccc
Confidence            9998643          344444546666654 3446799999999999832211                         


Q ss_pred             -----ecHHHHHHHHH-----Hh--------CCcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329          138 -----VTKKEGINFAR-----EY--------GCLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       138 -----~~~~~~~~~~~-----~~--------~~~~~~~sa~~~~~i~~~~~~l~~~~~~  178 (210)
                           ....++..+..     ..        .+.++++||.++.+++.+|+.+.+.+++
T Consensus       157 ~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~  215 (221)
T d1azta2         157 EPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR  215 (221)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred             cCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence                 01122222221     11        1335689999999999999998877764

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.84  E-value=7.8e-21  Score=139.73  Aligned_cols=157  Identities=17%  Similarity=0.107  Sum_probs=101.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCC---CceeeeEEEE--------------EEECCeEEEEEEEeCCCccccccc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP---TIGVDFKVKY--------------VDVGGKKLKLAIWDTAGQERFRTL   78 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~---~~~~~~~~~~--------------~~~~~~~~~~~l~D~~g~~~~~~~   78 (210)
                      .|+|+|++++|||||+++|++........   +.........              ..+......+.++||||+..|...
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~   86 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL   86 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred             EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence            39999999999999999998643211110   1100011000              012233456889999999998888


Q ss_pred             hhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH------------------
Q 028329           79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK------------------  140 (210)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~------------------  140 (210)
                      ....+..+|++|+|+|+.+.-......  .+..+..    .++|+|+++||+|+........                  
T Consensus        87 ~~~~~~~~D~~ilVvda~~g~~~~~~~--~~~~~~~----~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~  160 (227)
T d1g7sa4          87 RKRGGALADLAILIVDINEGFKPQTQE--ALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQK  160 (227)
T ss_dssp             BCSSSBSCSEEEEEEETTTCCCHHHHH--HHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHH
T ss_pred             chhcccccceEEEEEecccCcccchhH--HHHHhhc----CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHH
Confidence            888889999999999998764433322  3333332    4689999999999854321110                  


Q ss_pred             --HHHHHHHH---Hh---------------CCcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329          141 --KEGINFAR---EY---------------GCLFIECSAKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       141 --~~~~~~~~---~~---------------~~~~~~~sa~~~~~i~~~~~~l~~~~~~  178 (210)
                        ........   ..               .++++++||++|.|++++++.|.....+
T Consensus       161 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         161 LDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence              00000000   00               1358999999999999999998887644

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=3.7e-20  Score=133.02  Aligned_cols=157  Identities=15%  Similarity=0.113  Sum_probs=94.8

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc-------------
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF-------------   75 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------------   75 (210)
                      +.+...+|+|+|++|||||||+|+|++... .......+.+...........   +.+.|+++....             
T Consensus        19 p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~   95 (195)
T d1svia_          19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDE---LHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTT---EEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccccccc---ceEEEEEeeccccccccccchhhhH
Confidence            344456899999999999999999997653 333334444444444443332   334566552111             


Q ss_pred             ccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH----hC
Q 028329           76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE----YG  151 (210)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~----~~  151 (210)
                      ...+...+..+|++++++|++.+.....  ..++..+..    .++|+++|+||+|+........ ....+...    ..
T Consensus        96 ~~~~~~~~~~~~~vi~viD~~~~~~~~~--~~~~~~l~~----~~~piivv~NK~D~~~~~~~~~-~~~~~~~~l~~~~~  168 (195)
T d1svia_          96 IETYITTREELKAVVQIVDLRHAPSNDD--VQMYEFLKY----YGIPVIVIATKADKIPKGKWDK-HAKVVRQTLNIDPE  168 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHH----TTCCEEEEEECGGGSCGGGHHH-HHHHHHHHHTCCTT
T ss_pred             Hhhhhccccchhhhhhhhhccccccccc--ccccccccc----ccCcceechhhccccCHHHHHH-HHHHHHHHhcccCC
Confidence            1122234456899999999987644222  224555544    4689999999999854433221 11222222    34


Q ss_pred             CcEEEEccCCCCCHHHHHHHHHHHH
Q 028329          152 CLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       152 ~~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                      .+++.+||++|.|+++++++|.+.+
T Consensus       169 ~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         169 DELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998876

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=3.1e-20  Score=131.48  Aligned_cols=162  Identities=19%  Similarity=0.142  Sum_probs=102.2

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEE-EEEEECCeEEEEEEEeCCCcccc---------ccchhh
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKV-KYVDVGGKKLKLAIWDTAGQERF---------RTLTSS   81 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~l~D~~g~~~~---------~~~~~~   81 (210)
                      +--.|+++|.+|||||||+|+|++.+...... ....+... .....+.  ..+..||++|....         ......
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS   81 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhcccc
Confidence            34468999999999999999999876543322 11111211 2222222  34566788774221         112223


Q ss_pred             cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEEEEccC
Q 028329           82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-CLFIECSAK  160 (210)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~  160 (210)
                      ....+++++++.|..+....  ... +...+.    ....|.++++||.|..............+....+ .+++++||+
T Consensus        82 ~~~~~~~~l~~~d~~~~~~~--~~~-~~~~l~----~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~  154 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWTPD--DEM-VLNKLR----EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE  154 (179)
T ss_dssp             CCCCEEEEEEEEETTCCCHH--HHH-HHHHHH----SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred             chhhcceeEEEEecCccchh--HHH-HHHHhh----hccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCc
Confidence            34567888888887764332  222 223332    3457789999999986554433444455555555 479999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCCcc
Q 028329          161 TRVNVQQCFEELVLKILDTPSLL  183 (210)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~~~~~  183 (210)
                      +|.|+++++++|.+.+.+....+
T Consensus       155 ~g~gi~~L~~~i~~~lpe~~~~y  177 (179)
T d1egaa1         155 TGLNVDTIAAIVRKHLPEATHHF  177 (179)
T ss_dssp             TTTTHHHHHHHHHTTCCBCCCSS
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCC
Confidence            99999999999998886665544

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.82  E-value=2.4e-20  Score=134.04  Aligned_cols=162  Identities=15%  Similarity=0.116  Sum_probs=105.7

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC------CceeeeEEEEEE-------------------ECCeEEEEE
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP------TIGVDFKVKYVD-------------------VGGKKLKLA   65 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~------~~~~~~~~~~~~-------------------~~~~~~~~~   65 (210)
                      ....++|+++|+.++|||||+++|++........      +....+......                   .......+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            3456899999999999999999998643211110      111111111111                   112245689


Q ss_pred             EEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHH
Q 028329           66 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEG  143 (210)
Q Consensus        66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~--~~~~~  143 (210)
                      ++|+||+..|.......+..+|++++|+|+.+........+ .+..+...   ...+++++.||+|+.+....  ..+..
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e-~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~  157 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE-HLMALQII---GQKNIIIAQNKIELVDKEKALENYRQI  157 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHH-HHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHH-HHHHHHHh---cCccceeeeecccchhhHHHHHHHHHH
Confidence            99999999999888888899999999999998643333333 22233221   22457889999998654322  22233


Q ss_pred             HHHHHHh---CCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329          144 INFAREY---GCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       144 ~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                      ..+....   .++++++||++|.|++++++.+.+.+
T Consensus       158 ~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         158 KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            3333332   35799999999999999999987754

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.80  E-value=1e-19  Score=130.37  Aligned_cols=158  Identities=16%  Similarity=0.088  Sum_probs=107.6

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcC-------C--------CCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSD-------N--------FEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL   78 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~-------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   78 (210)
                      .++|+++|+.++|||||+++|++.       .        ........+.+.......+......+.++|+||+..|...
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~   82 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHH
Confidence            489999999999999999999741       0        0111113345555555555556677899999999999888


Q ss_pred             hhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee---cHHHHHHHHHHhC----
Q 028329           79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV---TKKEGINFAREYG----  151 (210)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~~~~~~----  151 (210)
                      ....+..+|++++|+|+.+...-+.. + .+..+..   ....|+||+.||+|+......   ...++..+....+    
T Consensus        83 ~~~~~~~aD~allVVda~~G~~~QT~-~-~~~~a~~---~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~  157 (196)
T d1d2ea3          83 MITGTAPLDGCILVVAANDGPMPQTR-E-HLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (196)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSCHHHH-H-HHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHhhcCeEEEEEEcCCCCchhHH-H-HHHHHHH---hcCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcc
Confidence            88888999999999999987543322 2 2222222   233578899999998643221   1123344444333    


Q ss_pred             -CcEEEEccCCC----------CCHHHHHHHHHHHH
Q 028329          152 -CLFIECSAKTR----------VNVQQCFEELVLKI  176 (210)
Q Consensus       152 -~~~~~~sa~~~----------~~i~~~~~~l~~~~  176 (210)
                       ++++.+|+++|          .++.++++.+.+.+
T Consensus       158 ~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             cCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence             56999999988          47888887775543

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.80  E-value=1.3e-18  Score=125.87  Aligned_cols=160  Identities=18%  Similarity=0.111  Sum_probs=101.3

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--------CceeeeEEEEEEE----------------------CCeEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--------TIGVDFKVKYVDV----------------------GGKKL   62 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~--------~~~~~~~~~~~~~----------------------~~~~~   62 (210)
                      ..++|+++|+.++|||||+++|++........        ..+..........                      .....
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   86 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLR   86 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEE
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceE
Confidence            34899999999999999999998633211000        0111100000000                      01224


Q ss_pred             EEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH--
Q 028329           63 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK--  140 (210)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~--  140 (210)
                      .+.++|+||+..|.......+..+|++|+|+|+.+.-.....++ .+..+..   ..-.|+||+.||+|+........  
T Consensus        87 ~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e-~~~~~~~---~~i~~iIV~vNK~Dl~~~~~~~~~~  162 (205)
T d2qn6a3          87 RISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE-HFVALGI---IGVKNLIIVQNKVDVVSKEEALSQY  162 (205)
T ss_dssp             EEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHH-HHHHHHH---TTCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             EEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHH-HHHHHHH---cCCceeeeccccCCCccchHHHHHH
Confidence            68899999999998888888889999999999988632222222 2222222   12258889999999965432211  


Q ss_pred             HHHHHHHHHh---CCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329          141 KEGINFAREY---GCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       141 ~~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                      .....+....   .++++++||++|.|++++++.|...+
T Consensus       163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         163 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            1222222222   36799999999999999999887765

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.75  E-value=1e-17  Score=121.97  Aligned_cols=154  Identities=21%  Similarity=0.179  Sum_probs=99.4

Q ss_pred             ccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCC--------------------------------CCCCceeeeEEEEE
Q 028329            8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE--------------------------------LSPTIGVDFKVKYV   55 (210)
Q Consensus         8 ~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~--------------------------------~~~~~~~~~~~~~~   55 (210)
                      +.+.+..+||+++|+.++|||||+.+|+......                                .....+.+......
T Consensus         3 ~~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~   82 (222)
T d1zunb3           3 QHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR   82 (222)
T ss_dssp             STTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEE
T ss_pred             ccccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEE
Confidence            3456788999999999999999999996321100                                00011122222222


Q ss_pred             EECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCC-cEEEEEeCCCCCC
Q 028329           56 DVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDC-IKLLVGNKVDKES  134 (210)
Q Consensus        56 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-piivv~nK~D~~~  134 (210)
                      .+......+.++|+||+..|.......+..+|++++|+|+.+...-+....  +..+..    .++ .+|++.||+|+..
T Consensus        83 ~~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~--~~~~~~----~gv~~iiv~vNK~D~~~  156 (222)
T d1zunb3          83 YFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRH--SYIASL----LGIKHIVVAINKMDLNG  156 (222)
T ss_dssp             EEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHH--HHHHHH----TTCCEEEEEEECTTTTT
T ss_pred             EEeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHH--HHHHHH----cCCCEEEEEEEcccccc
Confidence            233334568889999999999988888999999999999988654433322  222222    233 4788999999965


Q ss_pred             CceecH----HHHHHHHHHhCC-----cEEEEccCCCCCHHH
Q 028329          135 ERVVTK----KEGINFAREYGC-----LFIECSAKTRVNVQQ  167 (210)
Q Consensus       135 ~~~~~~----~~~~~~~~~~~~-----~~~~~sa~~~~~i~~  167 (210)
                      ......    .+...+....++     +++++||.+|.|+.+
T Consensus       157 ~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         157 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             ccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            433222    233444444443     578999999998843

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=8.3e-19  Score=126.53  Aligned_cols=141  Identities=17%  Similarity=0.144  Sum_probs=92.4

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCC--------CC-----CCCC---CceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDN--------FE-----ELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT   77 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~--------~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   77 (210)
                      .++|+++|++++|||||+++|+...        ..     ...+   ..+.+.......+......+.|+|+||+..|..
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~   82 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIK   82 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHH
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhHH
Confidence            5899999999999999999996320        00     0000   114444444444444556788899999999999


Q ss_pred             chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCcee---cHHHHHHHHHHhC--
Q 028329           78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV---TKKEGINFAREYG--  151 (210)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~---~~~~~~~~~~~~~--  151 (210)
                      .....+..+|++|+|+|+.+....+.... | ..+..    .++| ++|++||+|+......   ..+++..+....+  
T Consensus        83 ~~~~~~~~aD~avlVvda~~Gv~~qt~~~-~-~~~~~----~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~  156 (204)
T d2c78a3          83 NMITGAAQMDGAILVVSAADGPMPQTREH-I-LLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP  156 (204)
T ss_dssp             HHHHHHTTCSSEEEEEETTTCCCHHHHHH-H-HHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHCCEEEEEEECCCCCcHHHHHH-H-HHHHH----cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            88888999999999999998766544332 3 22222    3555 6788999998543221   1223334444333  


Q ss_pred             ---CcEEEEccC
Q 028329          152 ---CLFIECSAK  160 (210)
Q Consensus       152 ---~~~~~~sa~  160 (210)
                         ++++..|+.
T Consensus       157 ~~~i~~i~~sa~  168 (204)
T d2c78a3         157 GDEVPVIRGSAL  168 (204)
T ss_dssp             TTTSCEEECCHH
T ss_pred             cccceeeeeech
Confidence               457888875

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=3.2e-17  Score=116.31  Aligned_cols=167  Identities=14%  Similarity=0.045  Sum_probs=90.4

Q ss_pred             CcccccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCcccccc-----
Q 028329            4 SSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT-----   77 (210)
Q Consensus         4 ~~~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----   77 (210)
                      +...+.+.+..++|+++|.+|||||||+|+|++.+...... ...................+..++.++......     
T Consensus         6 ~~~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (188)
T d1puia_           6 PDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKW   85 (188)
T ss_dssp             SSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHH
T ss_pred             CChhHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhh
Confidence            44556677888999999999999999999999877644433 222222222233222222233223322111111     


Q ss_pred             -----chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH--HHHHHHHHHh
Q 028329           78 -----LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK--KEGINFAREY  150 (210)
Q Consensus        78 -----~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~~~~  150 (210)
                           .........+.++.+.+...........  +...+..    ...++++++||.|+........  +...+.....
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~  159 (188)
T d1puia_          86 QRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQ--MIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAF  159 (188)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG
T ss_pred             hhhhhhhhhhhhheeEEEEeecccccchhHHHH--HHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHhh
Confidence                 1111223455666677766654433322  3333332    3577899999999865433221  1222222222


Q ss_pred             --CCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329          151 --GCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       151 --~~~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                        ..+++.+||++|.|++++++.|.+.+
T Consensus       160 ~~~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         160 NGDVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             CSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence              34689999999999999999886643

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=8.7e-18  Score=121.50  Aligned_cols=118  Identities=19%  Similarity=0.213  Sum_probs=80.4

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhc----ccCccEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSY----YRGAQGI   89 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~----~~~~d~~   89 (210)
                      ..+|+++|++|||||||+|+|+++.+.....   ...  ....+......+.+||+||+..+...+...    +..++.+
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~~tt---~~~--~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~   77 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV---SQE--PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGL   77 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCCBCC---CSS--CEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCeEE---ecc--eEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhcccc
Confidence            4689999999999999999999887643221   111  223344455678899999988776655443    4456889


Q ss_pred             EEEEeCCC-cccHHHHHHHHHHHH--hhhccCCCCcEEEEEeCCCCCCCc
Q 028329           90 IMVYDVTR-RDTFTNLSDVWAKEI--DLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus        90 i~v~d~~~-~~s~~~~~~~~~~~~--~~~~~~~~~piivv~nK~D~~~~~  136 (210)
                      ++++|+.+ ..++.....++...+  .......++|+++++||+|+....
T Consensus        78 i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          78 IFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             ceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            99999764 555665555222221  122445689999999999986543

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=1.5e-16  Score=118.78  Aligned_cols=114  Identities=18%  Similarity=0.205  Sum_probs=79.7

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCC--C---------------CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNF--E---------------ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR   76 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (210)
                      .-+|.++|+.++|||||+.+|+....  .               ......+.++......+......++|+||||+..|.
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~   85 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT   85 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhH
Confidence            34799999999999999999963211  0               000111222222222333344678899999999999


Q ss_pred             cchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329           77 TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~  133 (210)
                      ......++.+|++|+|+|+.+.-......- |...     ...++|.++++||+|.+
T Consensus        86 ~e~~~~l~~~D~avlVvda~~Gv~~~T~~~-w~~a-----~~~~lP~i~fINKmDr~  136 (276)
T d2bv3a2          86 IEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQA-----EKYKVPRIAFANKMDKT  136 (276)
T ss_dssp             TTHHHHHHHCCEEEEEEETTTSSCHHHHHH-HHHH-----HTTTCCEEEEEECTTST
T ss_pred             HHHHHHHHhhhheEEeccccCCcchhHHHH-HHHH-----HHcCCCEEEEEeccccc
Confidence            999999999999999999998866555544 4332     23589999999999974

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.64  E-value=3.3e-16  Score=115.67  Aligned_cols=154  Identities=19%  Similarity=0.116  Sum_probs=82.6

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCC------------------------------CCCCCceeeeEEEEEEECCeE
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE------------------------------ELSPTIGVDFKVKYVDVGGKK   61 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~   61 (210)
                      ...++|+++|+.++|||||+.+|+...-.                              ......+.+............
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~  101 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  101 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence            45789999999999999999999421100                              000011222222222223344


Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccH------HHHHHHHHHHHhhhccCCCC-cEEEEEeCCCCCC
Q 028329           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTF------TNLSDVWAKEIDLYSTNQDC-IKLLVGNKVDKES  134 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~~-piivv~nK~D~~~  134 (210)
                      ..+.+.|+||+..|..........+|++++|+|+.+...-      .+..+ .+..+..    .++ +++++.||+|++.
T Consensus       102 ~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e-~l~l~~~----~~i~~iiv~iNKmD~~~  176 (245)
T d1r5ba3         102 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTRE-HAVLART----QGINHLVVVINKMDEPS  176 (245)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHH-HHHHHHH----TTCSSEEEEEECTTSTT
T ss_pred             ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHH-HHHHHHH----cCCCeEEEEEEcCCCCc
Confidence            5789999999999999888889999999999999874211      01122 1122221    233 4789999999864


Q ss_pred             Cc--eecHH----HHHHHHHHh-------CCcEEEEccCCCCCHHHHHH
Q 028329          135 ER--VVTKK----EGINFAREY-------GCLFIECSAKTRVNVQQCFE  170 (210)
Q Consensus       135 ~~--~~~~~----~~~~~~~~~-------~~~~~~~sa~~~~~i~~~~~  170 (210)
                      ..  ....+    +...+....       .++++++||++|.|+.++++
T Consensus       177 ~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         177 VQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            32  11111    222222222       25689999999999977544

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.63  E-value=9.1e-16  Score=114.17  Aligned_cols=110  Identities=14%  Similarity=0.157  Sum_probs=78.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----------------Cceeee--EEEEEEECCeEEEEEEEeCCCccccc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP-----------------TIGVDF--KVKYVDVGGKKLKLAIWDTAGQERFR   76 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~-----------------~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (210)
                      +|+++|+.++|||||+.+|+.........                 ..+.+.  ....+...  ...+.++||||+..|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~--~~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeeccccccc--ccceeEEccCchhhhh
Confidence            69999999999999999995322110000                 011122  22333344  4568899999999999


Q ss_pred             cchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329           77 TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~  133 (210)
                      ......++.+|++|+|+|+.+.-....... |....     ..++|.++++||+|..
T Consensus        82 ~e~~~al~~~D~avlvvda~~Gv~~~t~~~-~~~~~-----~~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          82 GEIRGALEAADAALVAVSAEAGVQVGTERA-WTVAE-----RLGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHH-----HTTCCEEEEEECGGGC
T ss_pred             hhhhhhhcccCceEEEeeccCCccchhHHH-HHhhh-----hccccccccccccccc
Confidence            999999999999999999998766555544 43333     2468999999999964

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=9.8e-17  Score=118.03  Aligned_cols=150  Identities=16%  Similarity=0.105  Sum_probs=95.8

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCC------------------CC------------CCCceeeeEEEEEEECCeEE
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFE------------------EL------------SPTIGVDFKVKYVDVGGKKL   62 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~------------------~~------------~~~~~~~~~~~~~~~~~~~~   62 (210)
                      ..++|+++|+.++|||||+.+|+...-.                  ..            ....+.+.......+.....
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~   84 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   84 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCE
Confidence            4589999999999999999999521000                  00            00122233222233334457


Q ss_pred             EEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccH------HHHHHHHHHHHhhhccCCCC-cEEEEEeCCCCCCC
Q 028329           63 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTF------TNLSDVWAKEIDLYSTNQDC-IKLLVGNKVDKESE  135 (210)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~~-piivv~nK~D~~~~  135 (210)
                      .+.|+|+||+..|.......+..+|++|+|+|+......      .+... .+.....    .++ ++||++||+|+...
T Consensus        85 ~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~e-h~~~~~~----~gv~~iiv~iNKmD~~~~  159 (239)
T d1f60a3          85 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAFT----LGVRQLIVAVNKMDSVKW  159 (239)
T ss_dssp             EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHHH----TTCCEEEEEEECGGGGTT
T ss_pred             EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHH-HHHHHHH----cCCCeEEEEEECCCCCCC
Confidence            899999999999999999999999999999999864210      11222 1122222    244 47889999998654


Q ss_pred             ceecH----HHHHHHHHHhC-----CcEEEEccCCCCCHHH
Q 028329          136 RVVTK----KEGINFAREYG-----CLFIECSAKTRVNVQQ  167 (210)
Q Consensus       136 ~~~~~----~~~~~~~~~~~-----~~~~~~sa~~~~~i~~  167 (210)
                      .....    ++...+....+     ++++.+|+..|.|+.+
T Consensus       160 d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         160 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            32222    23334444444     4589999999988654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.61  E-value=3.9e-16  Score=114.06  Aligned_cols=150  Identities=19%  Similarity=0.201  Sum_probs=91.5

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCC------------------------------CCCCCCceeeeEEEEEEECCeEEE
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNF------------------------------EELSPTIGVDFKVKYVDVGGKKLK   63 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~   63 (210)
                      .++|+++|+.++|||||+.+|+....                              .......+.+.......+......
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~   82 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   82 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence            58999999999999999998853110                              000012223333333344445567


Q ss_pred             EEEEeCCCccccccchhhcccCccEEEEEEeCCCcccH------HHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc-
Q 028329           64 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTF------TNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER-  136 (210)
Q Consensus        64 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-  136 (210)
                      +.++|+||+..|.......++-+|++|+|+|+.+...-      ....+ .+.....   ..-.++|++.||+|+.... 
T Consensus        83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e-~l~~~~~---~~~~~iIv~iNK~D~~~~~~  158 (224)
T d1jnya3          83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTRE-HIILAKT---MGLDQLIVAVNKMDLTEPPY  158 (224)
T ss_dssp             EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHH-HHHHHHH---TTCTTCEEEEECGGGSSSTT
T ss_pred             eEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHH-HHHHHHH---hCCCceEEEEEcccCCCccc
Confidence            89999999999999999999999999999999975311      11111 1111111   1234678899999985321 


Q ss_pred             -eecH----HHHHHHHHHhC-----CcEEEEccCCCCCHHH
Q 028329          137 -VVTK----KEGINFAREYG-----CLFIECSAKTRVNVQQ  167 (210)
Q Consensus       137 -~~~~----~~~~~~~~~~~-----~~~~~~sa~~~~~i~~  167 (210)
                       ....    .++..+....+     ++++++||..|.|+.+
T Consensus       159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             cHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence             1111    22333333332     4588999999998753

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.59  E-value=1.2e-14  Score=108.03  Aligned_cols=125  Identities=18%  Similarity=0.108  Sum_probs=76.2

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE--EEEEECCeEEEEEEEeCCCcccccc-------chhh-
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKV--KYVDVGGKKLKLAIWDTAGQERFRT-------LTSS-   81 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~-   81 (210)
                      ...++|+++|.+|||||||+|+|++.......+..++|...  .....++  ..+.++||||......       .... 
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            46799999999999999999999988766555533333332  3334444  4688999999532211       1111 


Q ss_pred             -cccCccEEEEEEeCCCcccHHHHHHHHHHHHhh-hccCCCCcEEEEEeCCCCCCCceec
Q 028329           82 -YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDL-YSTNQDCIKLLVGNKVDKESERVVT  139 (210)
Q Consensus        82 -~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~piivv~nK~D~~~~~~~~  139 (210)
                       .....|++++|++++...--..-.. .+..+.. +....-.+++||+||.|...+....
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~~-~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~  166 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDKL-VAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP  166 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHHH-HHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHHH-HHHHHHHHcchhhhhCEEEEEECcccCCcCCCc
Confidence             1235689999998875421111111 2222222 1122235789999999986654443

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=3.5e-14  Score=111.84  Aligned_cols=159  Identities=18%  Similarity=0.184  Sum_probs=93.0

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC----CCceeeeEEEEEEECCeEEEEEEEeCCCccccccc-----hhhcc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS----PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL-----TSSYY   83 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----~~~~~   83 (210)
                      ..++|+|+|.+|||||||+|+|++.......    ...++|.....+... ....+.+|||||.......     ....+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~-~~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeecc-CCCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            4699999999999999999999985532211    122233333333322 2234789999995433321     22235


Q ss_pred             cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC-------CCceecHHH----H----HHHHH
Q 028329           84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE-------SERVVTKKE----G----INFAR  148 (210)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~-------~~~~~~~~~----~----~~~~~  148 (210)
                      ..+|.++++.|..-.    .....+...+..    .++|+++|.||+|..       .......+.    .    .....
T Consensus       134 ~~~d~~l~~~~~~~~----~~d~~l~~~l~~----~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~  205 (400)
T d1tq4a_         134 YEYDFFIIISATRFK----KNDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR  205 (400)
T ss_dssp             GGCSEEEEEESSCCC----HHHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hcceEEEEecCCCCC----HHHHHHHHHHHH----cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHH
Confidence            568988888774322    122224444443    468999999999962       111111111    1    12223


Q ss_pred             HhCC---cEEEEccCC--CCCHHHHHHHHHHHHHcCC
Q 028329          149 EYGC---LFIECSAKT--RVNVQQCFEELVLKILDTP  180 (210)
Q Consensus       149 ~~~~---~~~~~sa~~--~~~i~~~~~~l~~~~~~~~  180 (210)
                      ..++   ++|.+|...  ..++.++.+.+.+.+.+.+
T Consensus       206 ~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~~  242 (400)
T d1tq4a_         206 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  242 (400)
T ss_dssp             HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             HcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHHH
Confidence            3333   377788754  4589999999888775543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=1.1e-13  Score=106.09  Aligned_cols=113  Identities=19%  Similarity=0.231  Sum_probs=79.4

Q ss_pred             EE-EEEEEcCCCCcHHHHHHHHhcCCC--C-------------CCCCCceeeeE--EEEEEE--------------CCeE
Q 028329           14 LF-KLLMIGDSGVGKSSLLLSFTSDNF--E-------------ELSPTIGVDFK--VKYVDV--------------GGKK   61 (210)
Q Consensus        14 ~~-~i~v~G~~~~GKTtli~~l~~~~~--~-------------~~~~~~~~~~~--~~~~~~--------------~~~~   61 (210)
                      .+ +|+++|+.++|||||+.+|+....  .             ......+.+..  ...+..              ++..
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~   95 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   95 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence            35 599999999999999999962110  0             00001112221  111211              3456


Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028329           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK  132 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~  132 (210)
                      +.+.++||||+..|.......++.+|++++|+|+.+.-....... |.....     .++|+++++||+|.
T Consensus        96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~-~~~a~~-----~~~p~i~viNKiDr  160 (341)
T d1n0ua2          96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQALG-----ERIKPVVVINKVDR  160 (341)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHHHHH-----TTCEEEEEEECHHH
T ss_pred             eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHH-HHHHHH-----cCCCeEEEEECccc
Confidence            789999999999999999999999999999999998866655544 444333     46899999999997

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.37  E-value=1.4e-12  Score=99.43  Aligned_cols=152  Identities=11%  Similarity=0.106  Sum_probs=89.8

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCC-----------------CC---------CCCC-CceeeeEEEEEEECC-----
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSDN-----------------FE---------ELSP-TIGVDFKVKYVDVGG-----   59 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~~-----------------~~---------~~~~-~~~~~~~~~~~~~~~-----   59 (210)
                      ...++|.|.|+||||||||+.+|....                 +.         .... ......+.......+     
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~  128 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV  128 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence            456999999999999999999986310                 00         0000 111112222211111     


Q ss_pred             -------------eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEE
Q 028329           60 -------------KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLV  126 (210)
Q Consensus        60 -------------~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv  126 (210)
                                   ..+.+.|++|.|...-...   ...-+|.+++|......+..+.... -+  +       +++-++|
T Consensus       129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~-gi--l-------E~aDi~v  195 (323)
T d2qm8a1         129 AAKTRETMLLCEAAGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKK-GI--F-------ELADMIA  195 (323)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCT-TH--H-------HHCSEEE
T ss_pred             hHHHHHHHHhhccCCCCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhh-hH--h-------hhhheee
Confidence                         1246778888886543333   3344999999999988765544432 11  1       1344899


Q ss_pred             EeCCCCCCCceecHHHHHHHHHH----------hCCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329          127 GNKVDKESERVVTKKEGINFARE----------YGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       127 ~nK~D~~~~~~~~~~~~~~~~~~----------~~~~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                      +||+|+.............+...          +..+++.+||+++.|+++++++|.+..
T Consensus       196 vNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~  255 (323)
T d2qm8a1         196 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  255 (323)
T ss_dssp             EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             EeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            99999865544333222222221          345699999999999999999997654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.36  E-value=8.8e-14  Score=102.30  Aligned_cols=112  Identities=16%  Similarity=-0.004  Sum_probs=66.2

Q ss_pred             EEEEEeCCCccccccchhhc-----ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce
Q 028329           63 KLAIWDTAGQERFRTLTSSY-----YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV  137 (210)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~  137 (210)
                      .+.+.|+||+..+.......     ....+.+++++|+.....-......++..... ......|.++++||+|+.....
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ivvinK~D~~~~~~  174 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLI-DLRLGATTIPALNKVDLLSEEE  174 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHH-HHHHTSCEEEEECCGGGCCHHH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHH-HHHhCCCceeeeeccccccHHH
Confidence            47888999987654322221     22457899999976543333222212111111 1123678999999999865422


Q ss_pred             ecHHH--------------------------HHHHHHH--hCCcEEEEccCCCCCHHHHHHHHHHH
Q 028329          138 VTKKE--------------------------GINFARE--YGCLFIECSAKTRVNVQQCFEELVLK  175 (210)
Q Consensus       138 ~~~~~--------------------------~~~~~~~--~~~~~~~~sa~~~~~i~~~~~~l~~~  175 (210)
                      .....                          .......  ..++++++||++|+|++++++.|.+.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         175 KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            11100                          0000111  24679999999999999999998775

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=1.9e-12  Score=98.86  Aligned_cols=101  Identities=17%  Similarity=0.177  Sum_probs=58.7

Q ss_pred             EEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec--H
Q 028329           63 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT--K  140 (210)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~--~  140 (210)
                      .+.|++|.|...-.   ..+...+|.+++|.+....+.......... .         ++-++|+||+|++......  .
T Consensus       148 d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~-e---------~aDi~VvNKaD~~~~~~~~~~~  214 (327)
T d2p67a1         148 DVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLM-E---------VADLIVINKDDGDNHTNVAIAR  214 (327)
T ss_dssp             SEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHH-H---------HCSEEEECCCCTTCHHHHHHHH
T ss_pred             CeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhhh-c---------cccEEEEEeecccchHHHHHHH
Confidence            35566666543322   224456899999999877766555544222 1         2337899999987543221  1


Q ss_pred             HHHHHHHH-------HhCCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329          141 KEGINFAR-------EYGCLFIECSAKTRVNVQQCFEELVLKI  176 (210)
Q Consensus       141 ~~~~~~~~-------~~~~~~~~~sa~~~~~i~~~~~~l~~~~  176 (210)
                      .+......       .+..+++.|||.+|.|++++++.|.+..
T Consensus       215 ~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         215 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             HHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            12222221       1235699999999999999999987644

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.20  E-value=1.1e-10  Score=87.39  Aligned_cols=83  Identities=25%  Similarity=0.224  Sum_probs=51.8

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC--CceeeeEEEEEE----------ECCeE---EEEEEEeCCCcc----
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP--TIGVDFKVKYVD----------VGGKK---LKLAIWDTAGQE----   73 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~--~~~~~~~~~~~~----------~~~~~---~~~~l~D~~g~~----   73 (210)
                      .+||.++|.|+||||||+++|++.... ..||  |.......+.+.          ++..+   ..+.++|+||--    
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            379999999999999999999976532 3344  222223332221          01111   357889999932    


Q ss_pred             ---ccccchhhcccCccEEEEEEeCC
Q 028329           74 ---RFRTLTSSYYRGAQGIIMVYDVT   96 (210)
Q Consensus        74 ---~~~~~~~~~~~~~d~~i~v~d~~   96 (210)
                         .........++.+|+++.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence               22223445578999999999874

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.17  E-value=1.9e-10  Score=86.77  Aligned_cols=85  Identities=22%  Similarity=0.218  Sum_probs=55.9

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCC--CCCCCCceeeeEEEEEEECC---------------eEEEEEEEeCCCccc-
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNF--EELSPTIGVDFKVKYVDVGG---------------KKLKLAIWDTAGQER-   74 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~D~~g~~~-   74 (210)
                      ..++|.++|.|+||||||+++|++...  ...+|..+.+...-.+.+..               ....+.+.|.||... 
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            458999999999999999999997643  34455222111111222222               124688899998322 


Q ss_pred             ------cccchhhcccCccEEEEEEeCCC
Q 028329           75 ------FRTLTSSYYRGAQGIIMVYDVTR   97 (210)
Q Consensus        75 ------~~~~~~~~~~~~d~~i~v~d~~~   97 (210)
                            ........++.+|+++.|+|+.+
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence                  22234556789999999999865

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.00  E-value=3.6e-10  Score=86.16  Aligned_cols=83  Identities=25%  Similarity=0.291  Sum_probs=46.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCC-CCCCC--Cc----eeeeEEEEE----------------EECCeEEEEEEEeCCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNF-EELSP--TI----GVDFKVKYV----------------DVGGKKLKLAIWDTAG   71 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~-~~~~~--~~----~~~~~~~~~----------------~~~~~~~~~~l~D~~g   71 (210)
                      ++|.++|.||||||||+|+|++... ...+|  |.    |.+......                ........+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            4799999999999999999997653 12333  11    211111100                0012346799999999


Q ss_pred             ccc-------cccchhhcccCccEEEEEEeCCC
Q 028329           72 QER-------FRTLTSSYYRGAQGIIMVYDVTR   97 (210)
Q Consensus        72 ~~~-------~~~~~~~~~~~~d~~i~v~d~~~   97 (210)
                      .-.       ........++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            422       12223334678999999999864

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=3.5e-09  Score=79.76  Aligned_cols=119  Identities=24%  Similarity=0.234  Sum_probs=70.0

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee-EEEEEEE-----------CC---------------------
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF-KVKYVDV-----------GG---------------------   59 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~-~~~~~~~-----------~~---------------------   59 (210)
                      ...+|+|+|..++|||||+|+|++..+......+.+.. ....+.-           .+                     
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            34689999999999999999999988633332111111 0111100           00                     


Q ss_pred             ------------------eEEEEEEEeCCCcccc-------------ccchhhcccCcc-EEEEEEeCCCcccHHHHHHH
Q 028329           60 ------------------KKLKLAIWDTAGQERF-------------RTLTSSYYRGAQ-GIIMVYDVTRRDTFTNLSDV  107 (210)
Q Consensus        60 ------------------~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~  107 (210)
                                        ....+.|+|+||....             ......++...+ ++++|.+++...+...... 
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~-  183 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK-  183 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH-
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHH-
Confidence                              0113789999994321             122334455555 5666777776655544444 


Q ss_pred             HHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329          108 WAKEIDLYSTNQDCIKLLVGNKVDKESER  136 (210)
Q Consensus       108 ~~~~~~~~~~~~~~piivv~nK~D~~~~~  136 (210)
                      +...+.    ....++++|.||+|.....
T Consensus       184 ~~~~~~----~~~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         184 IAKEVD----PQGQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHHHC----TTCSSEEEEEECGGGSCTT
T ss_pred             HHHHhC----cCCCceeeEEeccccccch
Confidence            444443    3446789999999985543

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.91  E-value=2.6e-09  Score=80.79  Aligned_cols=27  Identities=30%  Similarity=0.535  Sum_probs=24.2

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCCCC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDNFE   40 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~~~   40 (210)
                      ..+|+|+|..++|||||+|+|++..+.
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~l   50 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFL   50 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCC
Confidence            458999999999999999999988763

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.87  E-value=1.1e-09  Score=81.56  Aligned_cols=59  Identities=29%  Similarity=0.447  Sum_probs=39.6

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ   72 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (210)
                      ....++|+|+|.||||||||+|+|.+.+...+.+.+|.|.....+..+.   .+.++||||.
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEECCC---CeEEecCCCc
Confidence            3467999999999999999999999988878888888888777666544   3888999995

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.44  E-value=4.4e-07  Score=64.69  Aligned_cols=86  Identities=20%  Similarity=0.166  Sum_probs=59.4

Q ss_pred             hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH--HhCCcEEEEc
Q 028329           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR--EYGCLFIECS  158 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~s  158 (210)
                      -...+.|.+++|+++.+|+.-....+.|+.....    .+++.+||.||+||..+...  +....+..  ..+.+++.+|
T Consensus         6 P~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~--~~~~~~~~~~~~~~~v~~vS   79 (225)
T d1u0la2           6 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTS   79 (225)
T ss_dssp             TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECC
T ss_pred             CCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHHH--HHHHHhhcccccceeEEEec
Confidence            3567899999999998876444444435554443    57889999999999654322  22223333  2356899999


Q ss_pred             cCCCCCHHHHHHHH
Q 028329          159 AKTRVNVQQCFEEL  172 (210)
Q Consensus       159 a~~~~~i~~~~~~l  172 (210)
                      ++++.|++++..++
T Consensus        80 a~~~~g~~~L~~~l   93 (225)
T d1u0la2          80 AKTGMGIEELKEYL   93 (225)
T ss_dssp             TTTCTTHHHHHHHH
T ss_pred             cccchhHhhHHHHh
Confidence            99999999876655

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.31  E-value=2.5e-07  Score=66.05  Aligned_cols=59  Identities=25%  Similarity=0.146  Sum_probs=37.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-------CceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-------TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR   76 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (210)
                      -..+++|.+|||||||+|+|.+........       ...+|.....+.+.+.   -.++||||...+.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~  161 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLE  161 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccccc
Confidence            356899999999999999998764322211       2234444555566433   3567999965443

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.28  E-value=1.2e-06  Score=60.11  Aligned_cols=23  Identities=30%  Similarity=0.718  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      +||+++|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            48999999999999999999853

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.20  E-value=1.5e-06  Score=64.19  Aligned_cols=90  Identities=10%  Similarity=0.032  Sum_probs=64.6

Q ss_pred             hhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEc
Q 028329           79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECS  158 (210)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (210)
                      ....+..+|++++|+|+.++.+...-.  +...+      .+.|.|+|+||+|+.....  .+....++...+..++.+|
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~~~--l~~~~------~~Kp~IlVlNK~DLv~~~~--~~~w~~~f~~~~~~~i~is   78 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRNPM--IEDIL------KNKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSIN   78 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSCHH--HHHHC------SSSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECC
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCCHH--HHHHH------cCCCeEEEEECccCCchHH--HHHHHHHHHhcCCccceee
Confidence            345688899999999999987654321  22222      2579999999999975432  2233444556678899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHc
Q 028329          159 AKTRVNVQQCFEELVLKILD  178 (210)
Q Consensus       159 a~~~~~i~~~~~~l~~~~~~  178 (210)
                      +.++.+...+...+.+.+.+
T Consensus        79 a~~~~~~~~~~~~~~~~l~~   98 (273)
T d1puja_          79 SVNGQGLNQIVPASKEILQE   98 (273)
T ss_dssp             TTTCTTGGGHHHHHHHHHHH
T ss_pred             cccCCCccccchhhhhhhhh
Confidence            99999999888877776654

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.16  E-value=1.1e-06  Score=61.99  Aligned_cols=85  Identities=13%  Similarity=0.133  Sum_probs=49.9

Q ss_pred             EEEEEEeCCCccccccch----hhc---c-----cCccEEEEEEeCCCccc-HHHHHHHHHHHHhhhccCCCCcEEEEEe
Q 028329           62 LKLAIWDTAGQERFRTLT----SSY---Y-----RGAQGIIMVYDVTRRDT-FTNLSDVWAKEIDLYSTNQDCIKLLVGN  128 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~----~~~---~-----~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~piivv~n  128 (210)
                      ..+.|+||+|........    ..+   +     ...+-.++|+|++.... ...+.. +...+.       + --++.|
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~-~~~~~~-------~-~~lI~T  159 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKK-FHEAVG-------L-TGVIVT  159 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHH-HHHHHC-------C-SEEEEE
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHH-hhhccC-------C-ceEEEe
Confidence            468999999965444321    111   1     24577899999886543 333322 333222       1 148899


Q ss_pred             CCCCCCCceecHHHHHHHHHHhCCcEEEEcc
Q 028329          129 KVDKESERVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       129 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  159 (210)
                      |.|....    .-.+..+....+.|+..++.
T Consensus       160 KlDet~~----~G~~l~~~~~~~~Pi~~i~~  186 (207)
T d1okkd2         160 KLDGTAK----GGVLIPIVRTLKVPIKFVGV  186 (207)
T ss_dssp             CTTSSCC----CTTHHHHHHHHCCCEEEEEC
T ss_pred             ccCCCCC----ccHHHHHHHHHCCCEEEEeC
Confidence            9996432    22356667788999766664

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.14  E-value=7.4e-07  Score=63.74  Aligned_cols=88  Identities=13%  Similarity=0.104  Sum_probs=60.7

Q ss_pred             hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec--HHHHHHHHHHhCCcEEEEc
Q 028329           81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT--KKEGINFAREYGCLFIECS  158 (210)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~s  158 (210)
                      ....+.|.+++|+++.+|+.-....+.++....    ..+++.+||+||+||.......  .+.........+.+++.+|
T Consensus         6 P~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~----~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~S   81 (231)
T d1t9ha2           6 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTS   81 (231)
T ss_dssp             TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECC
T ss_pred             CCccccCEEEEEEECCCCCCCHHHHHHHHHHHH----HcCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeee
Confidence            346789999999999887543333333444433    4578889999999996543221  1223344566799999999


Q ss_pred             cCCCCCHHHHHHHH
Q 028329          159 AKTRVNVQQCFEEL  172 (210)
Q Consensus       159 a~~~~~i~~~~~~l  172 (210)
                      ++++.|++++..++
T Consensus        82 a~~~~gl~~L~~~l   95 (231)
T d1t9ha2          82 SKDQDSLADIIPHF   95 (231)
T ss_dssp             HHHHTTCTTTGGGG
T ss_pred             cCChhHHHHHHHhh
Confidence            99999988876544

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.13  E-value=1.3e-06  Score=61.96  Aligned_cols=90  Identities=16%  Similarity=0.148  Sum_probs=50.8

Q ss_pred             EEEEEEeCCCccccccch----hhc---cc-----CccEEEEEEeCCCcc-cHHHHHHHHHHHHhhhccCCCCcEEEEEe
Q 028329           62 LKLAIWDTAGQERFRTLT----SSY---YR-----GAQGIIMVYDVTRRD-TFTNLSDVWAKEIDLYSTNQDCIKLLVGN  128 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~----~~~---~~-----~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~piivv~n  128 (210)
                      +.+.|+||+|........    ..+   ..     ..+-.++|+|++... ....+..    ....    .+ +--+|.+
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~----~~~~----~~-~~~lI~T  164 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKI----FKEA----VN-VTGIILT  164 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHH----HHHH----SC-CCEEEEE
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhh----hccc----cC-CceEEEe
Confidence            358999999954433321    111   11     146788999987542 2222222    2221    11 2258899


Q ss_pred             CCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329          129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus       129 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  166 (210)
                      |.|...    ..-.+...+...+.|+..++.  |.+++
T Consensus       165 KlDe~~----~~G~~l~~~~~~~~Pi~~i~~--Gq~v~  196 (213)
T d1vmaa2         165 KLDGTA----KGGITLAIARELGIPIKFIGV--GEKAE  196 (213)
T ss_dssp             CGGGCS----CTTHHHHHHHHHCCCEEEEEC--SSSGG
T ss_pred             cccCCC----cccHHHHHHHHHCCCEEEEeC--CCCcc
Confidence            999642    233466777888999777763  44443

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.11  E-value=4.8e-07  Score=64.71  Aligned_cols=57  Identities=28%  Similarity=0.325  Sum_probs=32.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCC---C----CCceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNFEEL---S----PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR   76 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (210)
                      ..+++|++|||||||+|+|.+......   +    ....+|....-+..++.    .++||||...+.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~gg----~iiDTPG~r~~~  162 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGG----LVADTPGFSSLE  162 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTE----EEESSCSCSSCC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCCC----EEEECCcccccc
Confidence            456889999999999999997642211   1    11122333333344542    366999976554

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.10  E-value=2.4e-06  Score=60.35  Aligned_cols=91  Identities=13%  Similarity=0.132  Sum_probs=52.4

Q ss_pred             EEEEEEeCCCcccccc------chhhc--ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329           62 LKLAIWDTAGQERFRT------LTSSY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE  133 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~------~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~  133 (210)
                      ..+.|+||+|...+..      ....+  .-..+-+++|+|++....-...   .......    .++ --+|.||.|..
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~---~~~~~~~----~~~-~~lI~TKlDet  166 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDL---ASKFNQA----SKI-GTIIITKMDGT  166 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHH----CTT-EEEEEECTTSC
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHH---Hhhhhcc----cCc-ceEEEecccCC
Confidence            4689999999654432      11111  1235678899998765432221   2222221    122 24789999964


Q ss_pred             CCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329          134 SERVVTKKEGINFAREYGCLFIECSAKTRVNVQ  166 (210)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  166 (210)
                      .    ..-.+...+...+.|+..++.  |.+++
T Consensus       167 ~----~~G~~l~~~~~~~lPi~~it~--Gq~v~  193 (211)
T d1j8yf2         167 A----KGGGALSAVAATGATIKFIGT--GEKID  193 (211)
T ss_dssp             S----CHHHHHHHHHTTTCCEEEEEC--SSSTT
T ss_pred             C----cccHHHHHHHHHCcCEEEEeC--CCCcc
Confidence            2    345567778888999777774  44443

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.07  E-value=5.5e-06  Score=58.39  Aligned_cols=86  Identities=15%  Similarity=0.198  Sum_probs=50.9

Q ss_pred             EEEEEEeCCCccccccch----hhc--ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329           62 LKLAIWDTAGQERFRTLT----SSY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE  135 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~  135 (210)
                      ..+.|+||+|........    ..+  ..+.+-+++|.|++....-......+...+.       + -=++.+|.|... 
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~-------~-~~~I~TKlDe~~-  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG-------V-TGLVLTKLDGDA-  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC-------C-CEEEEECGGGCS-
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCC-------C-CeeEEeecCccc-
Confidence            468999999965444321    111  2356888999998766433222221222221       1 148899999542 


Q ss_pred             ceecHHHHHHHHHHhCCcEEEEcc
Q 028329          136 RVVTKKEGINFAREYGCLFIECSA  159 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~sa  159 (210)
                         ..-.+..+....+.|+..++.
T Consensus       164 ---~~G~~l~~~~~~~~Pi~~i~~  184 (207)
T d1ls1a2         164 ---RGGAALSARHVTGKPIYFAGV  184 (207)
T ss_dssp             ---SCHHHHHHHHHHCCCEEEEC-
T ss_pred             ---cchHHHHHHHHHCCCEEEEeC
Confidence               234566777888998766653

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=4.2e-06  Score=59.06  Aligned_cols=89  Identities=11%  Similarity=0.186  Sum_probs=51.2

Q ss_pred             EEEEEEeCCCccccccc----hh---hccc-----CccEEEEEEeCCCccc-HHHHHHHHHHHHhhhccCCCCcEEEEEe
Q 028329           62 LKLAIWDTAGQERFRTL----TS---SYYR-----GAQGIIMVYDVTRRDT-FTNLSDVWAKEIDLYSTNQDCIKLLVGN  128 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~----~~---~~~~-----~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~piivv~n  128 (210)
                      +.+.|+||+|.......    +.   ..++     ..+-.++|+|++.... ...... +...+       + +--++.|
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~-~~~~~-------~-~~~lIlT  162 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL-FHEAV-------G-LTGITLT  162 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHH-HHHHS-------C-CCEEEEE
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhh-hhhcc-------C-CceEEEe
Confidence            35789999995433321    11   1122     2468899999875432 222222 22222       1 2258899


Q ss_pred             CCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCH
Q 028329          129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNV  165 (210)
Q Consensus       129 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  165 (210)
                      |.|....    .-.+.......+.|+..++  .|.++
T Consensus       163 KlDe~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v  193 (211)
T d2qy9a2         163 KLDGTAK----GGVIFSVADQFGIPIRYIG--VGERI  193 (211)
T ss_dssp             CCTTCTT----TTHHHHHHHHHCCCEEEEE--CSSSG
T ss_pred             ecCCCCC----ccHHHHHHHHHCCCEEEEe--CCCCc
Confidence            9996433    3345667788899987777  44444

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=1.2e-05  Score=57.28  Aligned_cols=72  Identities=13%  Similarity=0.146  Sum_probs=39.3

Q ss_pred             ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcEEEEccCCCC
Q 028329           86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG--CLFIECSAKTRV  163 (210)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~  163 (210)
                      .++++.|+|+............+...+..       .=+|++||+|+..+.    +..+...+..+  +++++++ .-..
T Consensus       122 l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~-------AD~ivlNK~Dl~~~~----~~~~~~l~~lNP~a~Ii~~~-~g~v  189 (222)
T d1nija1         122 LDGVIALVDAVHADEQMNQFTIAQSQVGY-------ADRILLTKTDVAGEA----EKLHERLARINARAPVYTVT-HGDI  189 (222)
T ss_dssp             EEEEEEEEETTTHHHHHHHCHHHHHHHHT-------CSEEEEECTTTCSCT----HHHHHHHHHHCSSSCEEECC-SSCC
T ss_pred             ccchhhhhhhhhhhhhhhhhHHHHHHHHh-------CCcccccccccccHH----HHHHHHHHHHhCCCeEEEee-CCcc
Confidence            58889999987654322222212233322       226899999986432    23444455443  5577544 3334


Q ss_pred             CHHHHH
Q 028329          164 NVQQCF  169 (210)
Q Consensus       164 ~i~~~~  169 (210)
                      .++.+|
T Consensus       190 ~~~~ll  195 (222)
T d1nija1         190 DLGLLF  195 (222)
T ss_dssp             CGGGGS
T ss_pred             CHHHhh
Confidence            555543

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=4.4e-05  Score=52.01  Aligned_cols=21  Identities=29%  Similarity=0.637  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .|++.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999998863

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.73  E-value=7.5e-06  Score=56.12  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=20.8

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .-+|+|.|++|||||||+++|..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999975

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.63  E-value=1.2e-05  Score=54.43  Aligned_cols=23  Identities=39%  Similarity=0.613  Sum_probs=20.3

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..+|++.|+|||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999963

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.60  E-value=1.4e-05  Score=54.19  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=22.0

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ...++|++.|++||||||+.+.|..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            3457999999999999999999964

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=1.6e-05  Score=53.73  Aligned_cols=21  Identities=33%  Similarity=0.417  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -|.|+|.+|||||||+++|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999999974

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.60  E-value=1.7e-05  Score=55.11  Aligned_cols=27  Identities=22%  Similarity=0.394  Sum_probs=23.6

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      +.+.++|+++|+|||||||+...|...
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence            356789999999999999999999853

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.54  E-value=2.2e-05  Score=52.12  Aligned_cols=20  Identities=40%  Similarity=0.612  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028329           17 LLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~   36 (210)
                      |++.|+||||||||++.|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.51  E-value=2.4e-05  Score=53.59  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      +||+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.46  E-value=2.2e-05  Score=54.33  Aligned_cols=24  Identities=17%  Similarity=0.250  Sum_probs=21.0

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .+.+|+|.|+|||||||+++.|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999864

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.45  E-value=3.3e-05  Score=53.39  Aligned_cols=23  Identities=17%  Similarity=0.393  Sum_probs=20.8

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .+||+++|+|||||||+...|..
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHH
Confidence            47999999999999999999974

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.45  E-value=3.4e-05  Score=52.93  Aligned_cols=22  Identities=23%  Similarity=0.641  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999874

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.44  E-value=4e-05  Score=53.09  Aligned_cols=25  Identities=16%  Similarity=0.286  Sum_probs=21.4

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..+..|+|+|+|||||||++++|..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999999974

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.44  E-value=3.4e-05  Score=53.00  Aligned_cols=22  Identities=18%  Similarity=0.424  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .+|+|+|+|||||||+++.|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999874

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.42  E-value=3.6e-05  Score=51.91  Aligned_cols=21  Identities=29%  Similarity=0.504  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -|++.|+|||||||+++.|..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999999974

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=3.9e-05  Score=52.63  Aligned_cols=23  Identities=22%  Similarity=0.518  Sum_probs=20.8

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .++|+|+|+|||||||+.+.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999974

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=4.3e-05  Score=52.24  Aligned_cols=22  Identities=14%  Similarity=0.367  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .||+|+|+|||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998863

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=4.3e-05  Score=50.99  Aligned_cols=22  Identities=23%  Similarity=0.551  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999753

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=6e-05  Score=52.16  Aligned_cols=23  Identities=17%  Similarity=0.413  Sum_probs=20.5

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ++.|+|+|+|||||||...+|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999864

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.34  E-value=5.3e-05  Score=51.09  Aligned_cols=20  Identities=20%  Similarity=0.426  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028329           17 LLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~   36 (210)
                      +.|+|.+|||||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46999999999999999864

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=2.5e-05  Score=53.66  Aligned_cols=21  Identities=24%  Similarity=0.619  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~   37 (210)
                      |+|+|++||||+||+++|...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999999853

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.31  E-value=7.5e-05  Score=50.86  Aligned_cols=26  Identities=19%  Similarity=0.218  Sum_probs=21.9

Q ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           11 FDYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        11 ~~~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ...+.-|+++|.|||||||+++.+..
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34566789999999999999999864

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00014  Score=53.39  Aligned_cols=61  Identities=18%  Similarity=0.092  Sum_probs=40.7

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCCC--CCC---CC-CceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDNF--EEL---SP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQER   74 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~~--~~~---~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (210)
                      ...-|.++|+.++|||+|+|.|.+...  ...   .+ |.|.......+ .++....+.++|+.|...
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBCC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEecccccc
Confidence            456788999999999999999997653  111   11 55544433332 244456788899998543

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.27  E-value=6.8e-05  Score=52.39  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .-|+++|.|||||||+++.|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999999974

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.25  E-value=6.2e-05  Score=50.77  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=18.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHh
Q 028329           15 FKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~   35 (210)
                      .+|+++|.+||||||+.+.|.
T Consensus         2 p~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            368999999999999998885

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.23  E-value=9.9e-05  Score=49.95  Aligned_cols=23  Identities=17%  Similarity=0.345  Sum_probs=20.1

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHh
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~   35 (210)
                      .-+-|.++|.|||||||+.+.|.
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34778999999999999998886

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.20  E-value=8.5e-05  Score=49.95  Aligned_cols=21  Identities=33%  Similarity=0.559  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      +|+++|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998853

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=9.8e-05  Score=53.04  Aligned_cols=23  Identities=30%  Similarity=0.339  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      +|+|+|++|||||||++.+.+-.
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            68999999999999999999754

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.17  E-value=0.00011  Score=50.70  Aligned_cols=21  Identities=38%  Similarity=0.684  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~   37 (210)
                      |+|+|++|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999753

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.15  E-value=0.00014  Score=50.72  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+++..
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            47899999999999999998754

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00011  Score=49.36  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -+++.|++||||||+.+.|..
T Consensus         8 iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999874

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00012  Score=52.15  Aligned_cols=23  Identities=35%  Similarity=0.530  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      -++++|++|||||||++.+.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999998653

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.11  E-value=0.00014  Score=49.10  Aligned_cols=21  Identities=33%  Similarity=0.555  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~   37 (210)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778899999999999999753

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.10  E-value=0.00013  Score=52.71  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.|.+-.
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            68999999999999999998643

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.10  E-value=0.00013  Score=49.67  Aligned_cols=19  Identities=21%  Similarity=0.310  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028329           17 LLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~   35 (210)
                      |+|.|.+||||||+++.|.
T Consensus         4 I~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7788999999999999885

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.10  E-value=0.00017  Score=51.26  Aligned_cols=23  Identities=30%  Similarity=0.418  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .+.++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            47899999999999999888754

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.09  E-value=0.00022  Score=51.19  Aligned_cols=24  Identities=25%  Similarity=0.263  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      =.++++|++|||||||++.+.+-.
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            368999999999999999998654

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.09  E-value=0.00014  Score=51.94  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      ++++|++|||||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            5689999999999999999754

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00015  Score=52.38  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++++|++|||||||++.+.+-.
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            68999999999999999998654

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.07  E-value=0.00017  Score=49.63  Aligned_cols=25  Identities=24%  Similarity=0.154  Sum_probs=21.5

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..++-|+|.|++|||||||++.|..
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3567799999999999999999863

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.07  E-value=0.00015  Score=48.90  Aligned_cols=21  Identities=29%  Similarity=0.496  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~   37 (210)
                      |++.|.+||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            556699999999999999753

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.07  E-value=0.00015  Score=49.70  Aligned_cols=21  Identities=29%  Similarity=0.529  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~   37 (210)
                      |+++|++|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678899999999999999754

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.05  E-value=0.0002  Score=49.54  Aligned_cols=23  Identities=17%  Similarity=0.411  Sum_probs=19.9

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .-.|+++|+|||||||++..|..
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34588899999999999999975

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.05  E-value=0.00016  Score=51.70  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .+.++|++|||||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999999999754

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.00017  Score=53.04  Aligned_cols=23  Identities=35%  Similarity=0.573  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .++|+|++|||||||++.+.+..
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58899999999999999998754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.02  E-value=0.00016  Score=52.45  Aligned_cols=26  Identities=27%  Similarity=0.354  Sum_probs=21.7

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCC
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .+.-|++.|+||+|||||++.+....
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            34559999999999999999997643

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.00018  Score=49.70  Aligned_cols=20  Identities=40%  Similarity=0.649  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028329           17 LLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~   36 (210)
                      |+|+|++|||||||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.0001  Score=50.69  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=20.0

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ...|++.|.|||||||+.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999999964

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.01  E-value=0.00017  Score=49.84  Aligned_cols=22  Identities=18%  Similarity=0.363  Sum_probs=19.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      --|+|+|+|||||||+..+|..
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3488999999999999999974

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.00  E-value=0.00019  Score=48.55  Aligned_cols=20  Identities=20%  Similarity=0.509  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028329           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~   35 (210)
                      .|+++|++||||||+.+.|.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            37789999999999999985

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00019  Score=51.39  Aligned_cols=23  Identities=35%  Similarity=0.405  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      -+.++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            47899999999999999998754

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.97  E-value=0.00019  Score=50.94  Aligned_cols=24  Identities=21%  Similarity=0.420  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~   39 (210)
                      -++++|++|||||||++.+.+-..
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Confidence            378999999999999999997643

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.97  E-value=0.00019  Score=51.30  Aligned_cols=24  Identities=33%  Similarity=0.612  Sum_probs=21.1

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .-.+++.|+||+||||+++.+...
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999999854

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.00021  Score=49.96  Aligned_cols=21  Identities=33%  Similarity=0.518  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~   37 (210)
                      |+|+|++|||||||+++|...
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678899999999999999754

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.94  E-value=0.0003  Score=50.32  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .+.++|++|||||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            57899999999999999999754

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.91  E-value=0.00023  Score=50.69  Aligned_cols=23  Identities=30%  Similarity=0.537  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ..+++.|+||+||||+++.+...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            35899999999999999999854

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.89  E-value=0.00018  Score=52.10  Aligned_cols=24  Identities=29%  Similarity=0.290  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      =+++++|++|||||||++.+.+-.
T Consensus        45 e~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHhcC
Confidence            378999999999999999888643

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00018  Score=51.28  Aligned_cols=22  Identities=36%  Similarity=0.593  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -+.++|++|||||||++.+.+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999999974

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.88  E-value=0.00034  Score=50.12  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      -+.++|++|+|||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46899999999999999999754

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.87  E-value=0.00036  Score=49.91  Aligned_cols=24  Identities=25%  Similarity=0.296  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~~   39 (210)
                      -+.++|++|+|||||++.+.+...
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            467999999999999999997653

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.00035  Score=48.24  Aligned_cols=23  Identities=26%  Similarity=0.566  Sum_probs=19.8

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .=+++++|+||||||++++.|..
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHH
Confidence            34789999999999999988764

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00035  Score=48.88  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.4

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ++-|+|.|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            57799999999999999998853

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.77  E-value=0.00036  Score=50.52  Aligned_cols=23  Identities=35%  Similarity=0.485  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .+.++|++|||||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47899999999999999998653

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.76  E-value=0.00037  Score=47.47  Aligned_cols=20  Identities=40%  Similarity=0.690  Sum_probs=17.0

Q ss_pred             EE-EEEcCCCCcHHHHHHHHh
Q 028329           16 KL-LMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ~i-~v~G~~~~GKTtli~~l~   35 (210)
                      || +|.|.+||||||+++.|.
T Consensus         2 kiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            44 567999999999999885

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.76  E-value=0.0002  Score=51.30  Aligned_cols=23  Identities=22%  Similarity=0.496  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .+.++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            57899999999999999999754

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.73  E-value=0.00051  Score=49.60  Aligned_cols=22  Identities=41%  Similarity=0.520  Sum_probs=20.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      +.++|++|||||||++.+.+..
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            6899999999999999999764

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00049  Score=50.03  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=19.7

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .=+++++|+||||||++++.|..
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHH
Confidence            34789999999999999988764

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.67  E-value=0.00044  Score=48.56  Aligned_cols=23  Identities=17%  Similarity=0.289  Sum_probs=20.1

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .+.|++-|+|||||||....|..
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46788889999999999999863

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.67  E-value=0.00098  Score=44.28  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=21.0

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      ..-|++-|+=|||||||++.+...-
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhc
Confidence            3568889999999999999997543

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.66  E-value=0.00044  Score=51.47  Aligned_cols=23  Identities=35%  Similarity=0.572  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -.|+++||||||||.|++.+...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            45899999999999999999754

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.64  E-value=0.0007  Score=48.64  Aligned_cols=24  Identities=25%  Similarity=0.454  Sum_probs=21.3

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ...|++.|+||+|||++++.+...
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhc
Confidence            467999999999999999999853

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.62  E-value=0.00054  Score=48.51  Aligned_cols=22  Identities=36%  Similarity=0.604  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..+++.|++|+||||+++.+..
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3589999999999999998875

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.61  E-value=0.00049  Score=49.31  Aligned_cols=25  Identities=16%  Similarity=0.336  Sum_probs=21.3

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .-.+++.|+||+||||+++.++...
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            3468999999999999999998643

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.56  E-value=0.00065  Score=49.21  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=18.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .-+++.|+||+|||++++.+...
T Consensus        47 ~~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          47 MIYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEEECTTCCSSSHHHHHHHHHHH
T ss_pred             eEEEeECCCCCCHHHHHHHHHHH
Confidence            33456699999999999998743

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.55  E-value=0.00074  Score=46.30  Aligned_cols=24  Identities=25%  Similarity=0.308  Sum_probs=21.1

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .++-|+|.|.+||||||+++.|..
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999998864

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.48  E-value=0.0008  Score=48.39  Aligned_cols=24  Identities=21%  Similarity=0.292  Sum_probs=20.6

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .-.++|.|++|+|||++++.+...
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999988753

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.48  E-value=0.00076  Score=46.40  Aligned_cols=27  Identities=33%  Similarity=0.498  Sum_probs=23.1

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ...+++-|+|-|..||||||+++.|..
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            345668899999999999999999974

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.46  E-value=0.0007  Score=50.65  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .+|+|.|++|||||||++.|+..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            46999999999999999999853

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.44  E-value=0.00077  Score=48.44  Aligned_cols=23  Identities=30%  Similarity=0.583  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      --|++.|+||+|||++++.+...
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            35899999999999999999953

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.001  Score=49.25  Aligned_cols=26  Identities=19%  Similarity=0.239  Sum_probs=22.2

Q ss_pred             ccceEEEEEEEcCCCCcHHHHHHHHh
Q 028329           10 EFDYLFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        10 ~~~~~~~i~v~G~~~~GKTtli~~l~   35 (210)
                      ....++-|+|.|++|||||||.+.|.
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            34567999999999999999998875

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.00098  Score=46.58  Aligned_cols=21  Identities=29%  Similarity=0.460  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -|++.|+|||||+|+...|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467779999999999998863

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.35  E-value=0.00097  Score=47.15  Aligned_cols=22  Identities=36%  Similarity=0.736  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .+++.|++|+||||+++.++..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            3889999999999999998753

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.35  E-value=0.0012  Score=46.15  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=21.3

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ....-|.+.|.||||||||.+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999863

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.31  E-value=0.00099  Score=47.97  Aligned_cols=21  Identities=29%  Similarity=0.278  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -|+|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            477889999999999998864

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.30  E-value=0.0046  Score=44.53  Aligned_cols=88  Identities=19%  Similarity=0.149  Sum_probs=48.8

Q ss_pred             EEEEEEeCCCcccccc-chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcE-EEEEeCCCCCCCceec
Q 028329           62 LKLAIWDTAGQERFRT-LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK-LLVGNKVDKESERVVT  139 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pi-ivv~nK~D~~~~~~~~  139 (210)
                      +.+.++|+|+...... ........+|.++++... +..++..... ....+.......+..+ -++.|+.+....    
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~-~~~~i~~~~~~~~~~~~~vv~N~~~~~~~----  189 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANN-ISKGIQKYAKSGGVRLGGIICNSRKVANE----  189 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHH-HHHHHHHHBTTBBCEEEEEEEECCSSSCC----
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHH-HHHHHHhhccccceeccceEEeeecCCCc----
Confidence            4578889986433222 122223457888888776 3455555555 5555554433344433 378899886543    


Q ss_pred             HHHHHHHHHHhCCcEE
Q 028329          140 KKEGINFAREYGCLFI  155 (210)
Q Consensus       140 ~~~~~~~~~~~~~~~~  155 (210)
                      .+....+....+.+++
T Consensus       190 ~~~~~~~~~~~~~~~~  205 (269)
T d1cp2a_         190 YELLDAFAKELGSQLI  205 (269)
T ss_dssp             HHHHHHHHHHHTCCEE
T ss_pred             cchhhhhHhhcCCeEE
Confidence            2334555556666543

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.30  E-value=0.0011  Score=46.66  Aligned_cols=22  Identities=18%  Similarity=0.454  Sum_probs=19.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..+++.|++|+||||+++.+..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHH
Confidence            3589999999999999988764

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.25  E-value=0.00095  Score=47.67  Aligned_cols=23  Identities=26%  Similarity=0.483  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ..+++.|++|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999988653

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.0012  Score=47.61  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -.+++.|+||+|||++++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            45899999999999999999853

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.24  E-value=0.0012  Score=46.46  Aligned_cols=22  Identities=32%  Similarity=0.688  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .+++.|++|+||||+++.+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4899999999999999999753

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.22  E-value=0.0012  Score=47.70  Aligned_cols=24  Identities=21%  Similarity=0.407  Sum_probs=21.0

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .-.|++.|+||+|||++++.+...
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHH
Confidence            346999999999999999999864

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.16  E-value=0.0012  Score=51.54  Aligned_cols=22  Identities=36%  Similarity=0.658  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -+|+++||+|||||-|+++|..
T Consensus        50 sNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHH
Confidence            3899999999999999999953

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.03  E-value=0.0014  Score=47.45  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=21.4

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .--|++.|++|+|||+|++.+...-
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHh
Confidence            3459999999999999999998643

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.93  E-value=0.0028  Score=46.35  Aligned_cols=26  Identities=19%  Similarity=0.240  Sum_probs=21.8

Q ss_pred             cccceEEEEEEEcCCCCcHHHHHHHH
Q 028329            9 QEFDYLFKLLMIGDSGVGKSSLLLSF   34 (210)
Q Consensus         9 ~~~~~~~~i~v~G~~~~GKTtli~~l   34 (210)
                      .....++=|.|.|.+|||||||...|
T Consensus        22 ~~~~~P~iIGi~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          22 TGNKCPLFIFFSGPQGSGKSFTSIQI   47 (286)
T ss_dssp             TTCCSCEEEEEECCTTSSHHHHHHHH
T ss_pred             cCCCCCEEEEeECCCCCCHHHHHHHH
Confidence            34556799999999999999998765

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.83  E-value=0.0016  Score=49.85  Aligned_cols=22  Identities=27%  Similarity=0.588  Sum_probs=18.0

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHh
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~   35 (210)
                      .=+++++|+||||||++++.|.
T Consensus        43 k~n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHH
Confidence            3457999999999999986554

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.67  E-value=0.003  Score=43.56  Aligned_cols=21  Identities=24%  Similarity=0.450  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999988863

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.55  E-value=0.0032  Score=47.70  Aligned_cols=22  Identities=23%  Similarity=0.261  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -.+++.|+||+|||+|++.+..
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999874

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.54  E-value=0.0046  Score=41.73  Aligned_cols=25  Identities=40%  Similarity=0.643  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~   39 (210)
                      .-|++.|++|+||||++-.|....+
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4589999999999999999886543

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.0046  Score=42.91  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      +-|+|.|..||||||+.+.|...
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            56889999999999999988643

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.53  E-value=0.0016  Score=48.68  Aligned_cols=20  Identities=35%  Similarity=0.677  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028329           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~   35 (210)
                      .|++.|+||+|||+|++++.
T Consensus        30 ~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHH
Confidence            68999999999999999885

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.39  E-value=0.0055  Score=41.34  Aligned_cols=24  Identities=38%  Similarity=0.636  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      .-|++.|++|+||||++-.|....
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            458999999999999999988543

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0047  Score=42.52  Aligned_cols=22  Identities=18%  Similarity=0.283  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -+.|.|+||+|||+|+..+..+
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            3678899999999999888753

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.33  E-value=0.0078  Score=41.54  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      +-|++.|..||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6689999999999999998864

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.32  E-value=0.0044  Score=45.05  Aligned_cols=24  Identities=33%  Similarity=0.432  Sum_probs=20.4

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ..-|+|.|.+|+|||||+..++..
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            346889999999999999998753

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.31  E-value=0.0049  Score=42.69  Aligned_cols=20  Identities=20%  Similarity=0.328  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028329           17 LLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~   36 (210)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67779999999999988763

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.26  E-value=0.001  Score=45.56  Aligned_cols=18  Identities=33%  Similarity=0.665  Sum_probs=15.7

Q ss_pred             EEEcCCCCcHHHHHHHHh
Q 028329           18 LMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        18 ~v~G~~~~GKTtli~~l~   35 (210)
                      +|+|+.|||||||+.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            466999999999999874

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.22  E-value=0.0046  Score=46.81  Aligned_cols=23  Identities=26%  Similarity=0.521  Sum_probs=20.3

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .-+++++|++|||||-|+++|..
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeeeCCCCccHHHHHHHHHh
Confidence            45699999999999999999864

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.18  E-value=0.0057  Score=43.00  Aligned_cols=22  Identities=23%  Similarity=0.289  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -++|.|+||+|||+|+..+...
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4678899999999999888644

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.13  E-value=0.0063  Score=45.10  Aligned_cols=21  Identities=29%  Similarity=0.665  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .++++|++|||||.|++.|..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            588999999999999999864

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.08  E-value=0.0074  Score=40.42  Aligned_cols=25  Identities=36%  Similarity=0.604  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~~   39 (210)
                      .-|++.|++|+||||+.-.|....+
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4689999999999999988876543

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.03  E-value=0.0062  Score=42.47  Aligned_cols=21  Identities=29%  Similarity=0.605  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~   37 (210)
                      +.+.|++|+|||.|++.++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999854

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.00  E-value=0.007  Score=44.89  Aligned_cols=21  Identities=19%  Similarity=0.477  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~   37 (210)
                      +++.|+||+|||.|++.|...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            445699999999999999753

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.99  E-value=0.0066  Score=42.96  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -++|.|+||+|||+|...+...
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4678899999999999877643

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.0071  Score=42.00  Aligned_cols=19  Identities=21%  Similarity=0.312  Sum_probs=16.2

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028329           17 LLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~   35 (210)
                      |+|-|..||||||+++.|.
T Consensus         6 I~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6677999999999887765

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.90  E-value=0.0027  Score=46.36  Aligned_cols=20  Identities=30%  Similarity=0.539  Sum_probs=14.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028329           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~   35 (210)
                      -|+|.|.+||||||+.++|.
T Consensus         6 IIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEEESCC---CCTHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            48999999999999998773

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.0052  Score=43.28  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -.|+|-|..||||||+++.|..
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999998875

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.74  E-value=0.0087  Score=42.14  Aligned_cols=22  Identities=32%  Similarity=0.605  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -++|.|+||+|||+|+..+..+
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4678899999999999888654

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.73  E-value=0.0048  Score=45.23  Aligned_cols=18  Identities=28%  Similarity=0.621  Sum_probs=15.7

Q ss_pred             EEEcCCCCcHHHHHHHHh
Q 028329           18 LMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        18 ~v~G~~~~GKTtli~~l~   35 (210)
                      +++|+.||||||++.++.
T Consensus        28 vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEECCTTTCSTHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            567999999999998873

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.61  E-value=0.0099  Score=42.04  Aligned_cols=20  Identities=35%  Similarity=0.554  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028329           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~   35 (210)
                      .+++.|++|+||||+++.+.
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~   55 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLA   55 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            37889999999999998875

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.54  E-value=0.011  Score=40.88  Aligned_cols=21  Identities=24%  Similarity=0.528  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -+++.|++|+||||+++.+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999987653

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.50  E-value=0.015  Score=43.24  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=22.4

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ..++|.|=|.-||||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            5689999999999999999999853

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.46  E-value=0.011  Score=41.52  Aligned_cols=21  Identities=19%  Similarity=0.202  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -++|.|+||+|||+|+..+..
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            467889999999999988864

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.37  E-value=0.0086  Score=41.14  Aligned_cols=23  Identities=30%  Similarity=0.358  Sum_probs=19.6

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .-.+++.|++++|||+|+.+|..
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHH
Confidence            34688899999999999988864

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.28  E-value=0.013  Score=41.31  Aligned_cols=23  Identities=17%  Similarity=0.159  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      --++|.|+||+|||+|...+..+
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            35788899999999999888753

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.23  E-value=0.011  Score=44.99  Aligned_cols=21  Identities=33%  Similarity=0.619  Sum_probs=17.3

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHh
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~   35 (210)
                      .+.+ |+|+.|+|||+++.+++
T Consensus        26 ~l~~-i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          26 NFTS-IIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             SEEE-EECSTTSSHHHHHHHHH
T ss_pred             CEEE-EECCCCCCHHHHHHHHH
Confidence            3544 66999999999999874

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.15  E-value=0.013  Score=44.82  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -|+|.|+.||||||.++.+...
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCccHHHHHHhhh
Confidence            4899999999999999998754

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.97  E-value=0.016  Score=40.72  Aligned_cols=22  Identities=32%  Similarity=0.452  Sum_probs=19.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      --|+|=|.-||||||+++.|..
T Consensus         3 k~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            3578889999999999999974

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.96  E-value=0.016  Score=40.32  Aligned_cols=20  Identities=35%  Similarity=0.597  Sum_probs=16.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028329           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~   35 (210)
                      -+.|.|+||+|||+|+..++
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            46778999999999987654

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.68  E-value=0.022  Score=39.98  Aligned_cols=22  Identities=18%  Similarity=0.113  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..|++.|..||||||+.+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999964

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=93.61  E-value=0.018  Score=42.89  Aligned_cols=25  Identities=20%  Similarity=0.429  Sum_probs=22.3

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ..++|.|=|.-||||||+++.|...
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999999999999999854

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.61  E-value=0.014  Score=42.49  Aligned_cols=17  Identities=24%  Similarity=0.450  Sum_probs=13.7

Q ss_pred             EEEEcCCCCcHHHH-HHH
Q 028329           17 LLMIGDSGVGKSSL-LLS   33 (210)
Q Consensus        17 i~v~G~~~~GKTtl-i~~   33 (210)
                      ++|+|.||+||||. +++
T Consensus        17 ~lI~g~aGTGKTt~l~~r   34 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNK   34 (306)
T ss_dssp             EEECCCTTSCHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHH
Confidence            67889999999965 444

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.58  E-value=0.021  Score=41.07  Aligned_cols=20  Identities=25%  Similarity=0.479  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 028329           17 LLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~   36 (210)
                      ++|.|+||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            57889999999999877753

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.58  E-value=0.025  Score=41.93  Aligned_cols=24  Identities=21%  Similarity=0.429  Sum_probs=21.4

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..++|.|=|.-||||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            457899999999999999999974

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.55  E-value=0.02  Score=39.67  Aligned_cols=19  Identities=21%  Similarity=0.242  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028329           17 LLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~   35 (210)
                      |+|-|.-||||||+++.|.
T Consensus         6 I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            7788999999999998886

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.42  E-value=0.017  Score=42.28  Aligned_cols=15  Identities=40%  Similarity=0.826  Sum_probs=12.9

Q ss_pred             EEEEcCCCCcHHHHH
Q 028329           17 LLMIGDSGVGKSSLL   31 (210)
Q Consensus        17 i~v~G~~~~GKTtli   31 (210)
                      ++|.|.+||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            788899999999654

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.33  E-value=0.032  Score=34.86  Aligned_cols=23  Identities=13%  Similarity=0.219  Sum_probs=20.8

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHh
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~   35 (210)
                      .-|.|++-|.+|+||+||.+.|.
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHH
Confidence            34889999999999999999986

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.18  E-value=0.022  Score=42.10  Aligned_cols=21  Identities=33%  Similarity=0.719  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      .++++|++|+|||.+++.|..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            578889999999999988753

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.05  E-value=0.027  Score=40.28  Aligned_cols=19  Identities=32%  Similarity=0.480  Sum_probs=16.2

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028329           17 LLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~   35 (210)
                      .+|.|++|+|||+|+-.+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5588999999999987664

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.82  E-value=0.034  Score=40.34  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      =|++++|++|+|||+|+..+..+
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHHH
Confidence            48999999999999999888754

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.59  E-value=0.033  Score=42.68  Aligned_cols=22  Identities=41%  Similarity=0.551  Sum_probs=18.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -.++|+|.+|+|||+++..+..
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            4589999999999999877653

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.58  E-value=0.036  Score=39.83  Aligned_cols=24  Identities=13%  Similarity=0.252  Sum_probs=20.3

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ..--+.+.|++++|||+|++.+..
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHH
Confidence            345678889999999999999874

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.73  E-value=0.051  Score=40.79  Aligned_cols=18  Identities=22%  Similarity=0.449  Sum_probs=14.7

Q ss_pred             EEEEEcCCCCcHHHHHHH
Q 028329           16 KLLMIGDSGVGKSSLLLS   33 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~   33 (210)
                      -.+|.|+||+|||+++..
T Consensus       165 ~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             EEEEECCTTSTHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHH
Confidence            467789999999998744

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.37  E-value=0.059  Score=38.17  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=19.8

Q ss_pred             EEEEEEEcCCCCcHHHHHHHHhc
Q 028329           14 LFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        14 ~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ...|+|.|++|+||+.+++.+..
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHH
Confidence            34589999999999999999864

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=90.38  E-value=0.085  Score=37.70  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      -+.+.|++++|||+|+-.++..
T Consensus        56 itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHH
Confidence            3578899999999999777643

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.29  E-value=0.093  Score=37.74  Aligned_cols=22  Identities=32%  Similarity=0.724  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 028329           16 KLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      |++++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7999999999999998888654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.49  E-value=0.11  Score=36.38  Aligned_cols=19  Identities=26%  Similarity=0.377  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028329           17 LLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~   35 (210)
                      +++.|+..+||||+++.+.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            6788999999999999874

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.04  E-value=0.12  Score=35.87  Aligned_cols=19  Identities=32%  Similarity=0.474  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 028329           17 LLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~   35 (210)
                      +++.|+..+||||+++.+.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6889999999999999874

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=88.20  E-value=0.1  Score=38.08  Aligned_cols=14  Identities=43%  Similarity=0.726  Sum_probs=12.7

Q ss_pred             EEEcCCCCcHHHHH
Q 028329           18 LMIGDSGVGKSSLL   31 (210)
Q Consensus        18 ~v~G~~~~GKTtli   31 (210)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            68899999999976

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.80  E-value=0.14  Score=34.24  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 028329           17 LLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l~~~   37 (210)
                      ++|+|...||||.++..+...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998743

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=87.73  E-value=0.11  Score=38.00  Aligned_cols=15  Identities=40%  Similarity=0.651  Sum_probs=13.1

Q ss_pred             EEEEcCCCCcHHHHH
Q 028329           17 LLMIGDSGVGKSSLL   31 (210)
Q Consensus        17 i~v~G~~~~GKTtli   31 (210)
                      -+++|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            388899999999975

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.17  E-value=0.13  Score=37.67  Aligned_cols=14  Identities=43%  Similarity=0.726  Sum_probs=12.9

Q ss_pred             EEEcCCCCcHHHHH
Q 028329           18 LMIGDSGVGKSSLL   31 (210)
Q Consensus        18 ~v~G~~~~GKTtli   31 (210)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (323)
T d1ii2a1          18 VFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEECCTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            58999999999987

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.04  E-value=0.25  Score=33.50  Aligned_cols=24  Identities=13%  Similarity=0.092  Sum_probs=21.1

Q ss_pred             eEEEEEEEcCCCCcHHHHHHHHhc
Q 028329           13 YLFKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        13 ~~~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      ....+++-|++|+|||+++..+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999988764

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=85.73  E-value=0.26  Score=33.32  Aligned_cols=20  Identities=20%  Similarity=0.346  Sum_probs=16.5

Q ss_pred             EEEEEEcCC-CCcHHHHHHHH
Q 028329           15 FKLLMIGDS-GVGKSSLLLSF   34 (210)
Q Consensus        15 ~~i~v~G~~-~~GKTtli~~l   34 (210)
                      -|++|.|-. ||||||+.-.|
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~L   22 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCAL   22 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHH
Confidence            378899995 99999987655

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.50  E-value=2.9  Score=26.33  Aligned_cols=23  Identities=26%  Similarity=0.583  Sum_probs=18.1

Q ss_pred             EEEEEcC-CCCcHHHHHHHHhcCCC
Q 028329           16 KLLMIGD-SGVGKSSLLLSFTSDNF   39 (210)
Q Consensus        16 ~i~v~G~-~~~GKTtli~~l~~~~~   39 (210)
                      ||.++|. ..+| +++...|.....
T Consensus         2 Kv~IiGA~G~VG-~~~A~~l~~~~~   25 (144)
T d1mlda1           2 KVAVLGASGGIG-QPLSLLLKNSPL   25 (144)
T ss_dssp             EEEEETTTSTTH-HHHHHHHHTCTT
T ss_pred             eEEEECCCChHH-HHHHHHHHhCCc
Confidence            7999995 8999 666778876554

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=85.39  E-value=0.26  Score=35.16  Aligned_cols=21  Identities=24%  Similarity=0.344  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 028329           16 KLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~~   36 (210)
                      -+.+.|++++|||+|+..++.
T Consensus        59 itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHH
Confidence            456789999999999987764

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.36  E-value=2.4  Score=28.56  Aligned_cols=65  Identities=11%  Similarity=0.074  Sum_probs=42.5

Q ss_pred             EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEE-EEEeCCCCCC
Q 028329           62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVGNKVDKES  134 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pii-vv~nK~D~~~  134 (210)
                      +.+.++|+++...  ......+..+|.++++...+ ..++..... ....++.    .+.|++ +|.|+.+...
T Consensus       112 ~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~-~~~~~~~----~~~~~~giv~N~~~~~~  177 (237)
T d1g3qa_         112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMK-VGIVLKK----AGLAILGFVLNRYGRSD  177 (237)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHH-HHHHHHH----TTCEEEEEEEEEETSCT
T ss_pred             CCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhH-HHHHHhh----hhhhhhhhhhccccccc
Confidence            4688899987543  33445567799999999875 344555544 3444433    456655 8899998643

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.05  E-value=0.28  Score=35.01  Aligned_cols=22  Identities=18%  Similarity=0.280  Sum_probs=17.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      --+.+.|++++|||+|+-.++.
T Consensus        61 ~i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          61 RVIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             eeEEEecCCCcHHHHHHHHHHH
Confidence            3456889999999999877763

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.94  E-value=0.21  Score=36.00  Aligned_cols=22  Identities=32%  Similarity=0.481  Sum_probs=18.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTS   36 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~   36 (210)
                      =|++++|.+|+|||+|+..+..
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHH
Confidence            4789999999999999876653

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=84.77  E-value=1.7  Score=27.57  Aligned_cols=23  Identities=22%  Similarity=0.341  Sum_probs=17.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      -||.++|..++| ++++..+....
T Consensus         2 kKI~IIGaG~VG-~~~a~~l~~~~   24 (146)
T d1hyha1           2 RKIGIIGLGNVG-AAVAHGLIAQG   24 (146)
T ss_dssp             CEEEEECCSHHH-HHHHHHHHHHT
T ss_pred             CeEEEECcCHHH-HHHHHHHHhcC
Confidence            389999988888 56677666544

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.05  E-value=0.31  Score=34.68  Aligned_cols=19  Identities=37%  Similarity=0.597  Sum_probs=14.9

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 028329           16 KLLMIGDSGVGKSSLLLSF   34 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l   34 (210)
                      -|++.|-.|+||||+.-.|
T Consensus        10 ~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1          10 YLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCcChHHHHHHHH
Confidence            3467899999999976554

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=83.96  E-value=0.25  Score=35.38  Aligned_cols=24  Identities=25%  Similarity=0.392  Sum_probs=19.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329           15 FKLLMIGDSGVGKSSLLLSFTSDN   38 (210)
Q Consensus        15 ~~i~v~G~~~~GKTtli~~l~~~~   38 (210)
                      =|++++|.+|+|||+|+..+..+.
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHHTC
T ss_pred             ceEeeccCCCCChHHHHHHHHhhh
Confidence            368899999999999987655443

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=82.89  E-value=1.3  Score=29.08  Aligned_cols=27  Identities=19%  Similarity=0.390  Sum_probs=18.6

Q ss_pred             cceEEEEEEEcC-CCCcHHHHHHHHhcCC
Q 028329           11 FDYLFKLLMIGD-SGVGKSSLLLSFTSDN   38 (210)
Q Consensus        11 ~~~~~~i~v~G~-~~~GKTtli~~l~~~~   38 (210)
                      ..+.+||.|+|. .++|=+ |+.+|..+.
T Consensus        21 ~k~~~kV~I~GA~G~Ig~~-l~~~La~g~   48 (175)
T d7mdha1          21 WKKLVNIAVSGAAGMISNH-LLFKLASGE   48 (175)
T ss_dssp             CCCCEEEEEETTTSHHHHH-HHHHHHHTT
T ss_pred             cCCCcEEEEECCCcHHHHH-HHHHHHcCc
Confidence            346799999996 667755 555665544

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=82.64  E-value=0.26  Score=30.82  Aligned_cols=20  Identities=20%  Similarity=0.177  Sum_probs=15.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028329           16 KLLMIGDSGVGKSSLLLSFT   35 (210)
Q Consensus        16 ~i~v~G~~~~GKTtli~~l~   35 (210)
                      ..++.++.|+|||+++-.+.
T Consensus        10 ~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            35678999999998875544

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=82.36  E-value=0.41  Score=33.85  Aligned_cols=18  Identities=28%  Similarity=0.809  Sum_probs=13.6

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 028329           17 LLMIGDSGVGKSSLLLSF   34 (210)
Q Consensus        17 i~v~G~~~~GKTtli~~l   34 (210)
                      |++.|-.||||||+.-.|
T Consensus        23 ii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          23 IMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            355599999999985444

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=81.77  E-value=0.46  Score=30.16  Aligned_cols=18  Identities=22%  Similarity=0.405  Sum_probs=13.8

Q ss_pred             EEEcCCCCcHHH-HHHHHh
Q 028329           18 LMIGDSGVGKSS-LLLSFT   35 (210)
Q Consensus        18 ~v~G~~~~GKTt-li~~l~   35 (210)
                      +++|+=.||||| |++++.
T Consensus         6 ~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHH
Confidence            457999999999 555553

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=81.62  E-value=1.5  Score=28.07  Aligned_cols=25  Identities=20%  Similarity=0.202  Sum_probs=18.8

Q ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329           12 DYLFKLLMIGDSGVGKSSLLLSFTSD   37 (210)
Q Consensus        12 ~~~~~i~v~G~~~~GKTtli~~l~~~   37 (210)
                      .+..||.++|..++| +++...+...
T Consensus         5 ~k~~KI~IIGaG~VG-~~lA~~l~~~   29 (154)
T d1pzga1           5 QRRKKVAMIGSGMIG-GTMGYLCALR   29 (154)
T ss_dssp             SCCCEEEEECCSHHH-HHHHHHHHHH
T ss_pred             cCCCcEEEECCCHHH-HHHHHHHHhC
Confidence            346899999999999 5666666543

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=80.75  E-value=0.54  Score=33.50  Aligned_cols=116  Identities=18%  Similarity=0.206  Sum_probs=58.6

Q ss_pred             EEEEEEeCCCccccccchhh-cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcE-EEEEeCCCCCCCceec
Q 028329           62 LKLAIWDTAGQERFRTLTSS-YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK-LLVGNKVDKESERVVT  139 (210)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pi-ivv~nK~D~~~~~~~~  139 (210)
                      +.+.++|+|+.......... ....+|.++++... +..++..+.. ....+.......+.++ -+|.|+.+....    
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~-~~~s~~~~~~-~~~~i~~~~~~~~~~~~gvv~n~~~~~~~----  192 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANN-ISKGIVKYANSGSVRLGGLICNSRNTDRE----  192 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHH-HHHHHHHHHTTSCCEEEEEEEECCCCTTH----
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccch-hHHHHHHHHH-HHHHHHhhhhcccccccceeehhhcchhh----
Confidence            45788888765332222111 12346666666554 3445555544 4444444333445554 378898874322    


Q ss_pred             HHHHHHHHHHhCCcEEEEc---------cCC---------CCCHHHHHHHHHHHHHcCCCcc
Q 028329          140 KKEGINFAREYGCLFIECS---------AKT---------RVNVQQCFEELVLKILDTPSLL  183 (210)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~s---------a~~---------~~~i~~~~~~l~~~~~~~~~~~  183 (210)
                      .+....+...++.+++.+-         ...         +.....-|..|.+.+.++....
T Consensus       193 ~~~~~~~~~~~g~~vl~~IP~~~~v~eA~~~g~pv~~~~p~S~~a~~y~~LA~ei~e~~~~~  254 (289)
T d2afhe1         193 DELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIEYDPKAKQADEYRALARKVVDNKLLV  254 (289)
T ss_dssp             HHHHHHHHHHHTSCEEEEECCCHHHHHHHHTTSCHHHHCTTSHHHHHHHHHHHHHHHCCCCB
T ss_pred             HHHHHHHHHHcCCeEEEEEeccHHHHHHHHcCCceEEECcCCHHHHHHHHHHHHHHcCCCCC
Confidence            2223444555565544321         111         2233445777778777766544