Citrus Sinensis ID: 028341

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MAADAEKLATVATTTDNAKASAEGNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVSGDADLVTDTQKKIRRAERFGMPVQMSEEEKRNTRAERFGTGSKTQGSEVSKTSEELKRKARAERFGLPVPSSVSEEEAKRKARLARFAPYPKTDSVEEDKRKARALRFSKTSSSSVSQVNGKGNIEVEAAAITGEADGVA
Secondary Structure (PSIPRED)
cccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccHHccccccccHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccHHEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccEEEcHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccccccEEEEEccccccc
Coil and Loop (DISEMBL)
MAADAEKLATVATttdnakasaegnpknnvgpmdleqnpgadvnssAVEVkkngndsktaVTITavspvsgdadlvTDTQKKIRRAerfgmpvqmseeeKRNTraerfgtgsktqgsevsKTSEELKRKARAerfglpvpssvsEEEAKRKARLarfapypktdsveeDKRKARALRFsktssssvsqvngkgnIEVEAAAItgeadgva
Flexible Loop (DISEMBL)
maadaeklatvatttdnakasaegnpknnvgpMDLEQNPGADVNSSAVEVKkngndsktavtitavspvsgdadlvtdTQKKIRraerfgmpvqmseeekrntraerfgtgsktqgsevsktseelkrkaraerfglpvpssvseeeakrkarlarfapypktdsveedkrKARALrfsktssssvsqvngkgnieVEAAAITGEADGVA
Low Complexity Region (SEG)
MAADAEKLATVATTTDNAKASAEGNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVSGDADLVTDTQKKIRRAERFGMPVQMSEEEKRNTRAERFGTGSKTQGSEVSKTSEELKRKARAERFGLPVPSSVSEEEAKRKARLARFAPYPKTDSVEEDKRKARALRFsktssssvsQVNGKGNIEVEAAAITGEADGVA
Disordered region (IsUnstruct)
******************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
*********************************************************************************************************************************************************************************************************ITGEAD***
Disordered Region (DISEMBL)
***********************GNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVSGDADLVTDTQKKIRRAERFGMPV**********************************RKARAERFGLP**************RLARFAPYP*****************************GKGNIEVEAAAITGEADGVA
Disordered Region (DISPRO)
****AEKLATVATTTDNAK*********************************************************TDTQKKIRRAERFGMPVQMSEE**********************************************************FAP***************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAADAEKLATVATTTDNAKASAEGNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVSGDADLVTDTQKKIRRAERFGMPVQMSEEEKRNTRAERFGTGSKTQGSEVSKTSEELKRKARAERFGLPVPSSVSEEEAKRKARLARFAPYPKTDSVEEDKRKARALRFSKTSSSSVSQVNGKGNIEVEAAAITGEADGVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
Q9D1J3	210	SAP domain-containing rib	yes	no	0.471	0.471	0.4	0.0006
Q498U4	210	SAP domain-containing rib	yes	no	0.471	0.471	0.4	0.0008

>sp|Q9D1J3|SARNP_MOUSE SAP domain-containing ribonucleoprotein OS=Mus musculus GN=Sarnp PE=1 SV=3

 Score = 44.3 bits (103), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 59/115 (51%), Gaps = 16/115 (13%)

Query: 76  VTDTQKKIRRAERFGMPVQMSEEEKRNTRAERFGTGS---KTQGSEVSKTSEELKRKARA 132
           +  T++  +RAERF +PV +  E K+  RA RFG  S   K   S+        K K RA
Sbjct: 97  IPQTERMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDTKPMVNLDKLKERA 154

Query: 133 ERFGLPVPSSV---SEEEAKRKARLARF------APYPKTDSVEEDKRKARALRF 178
           +RFGL V SS+   SE++ K K R  RF      A    T+  E  KRK RA RF
Sbjct: 155 QRFGLNV-SSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERF 207

Binds both single-stranded and double-stranded DNA with higher affinity for the single-stranded form. Specifically binds to scaffold/matrix attachment region DNA. Also binds single-stranded RNA. Enhances RNA unwinding activity of DDX39A. May participate in important transcriptional or translational control of cell growth, metabolism and carcinogenesis.
Mus musculus (taxid: 10090)

>sp|Q498U4|SARNP_RAT SAP domain-containing ribonucleoprotein OS=Rattus norvegicus GN=Sarnp PE=1 SV=3

 Score = 43.9 bits (102), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 59/115 (51%), Gaps = 16/115 (13%)

Query: 76  VTDTQKKIRRAERFGMPVQMSEEEKRNTRAERFGTGS---KTQGSEVSKTSEELKRKARA 132
           +  T++  +RAERF +PV +  E K+  RA RFG  S   K   S+        K K RA
Sbjct: 97  IPQTERMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDTKPMVNLDKLKERA 154

Query: 133 ERFGLPVPSSV---SEEEAKRKARLARF------APYPKTDSVEEDKRKARALRF 178
           +RFGL V SS+   SE++ K K R  RF      A    T+  E  KRK RA RF
Sbjct: 155 QRFGLNV-SSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERF 207

Binds both single-stranded and double-stranded DNA with higher affinity for the single-stranded form. Specifically binds to scaffold/matrix attachment region DNA. Also binds single-stranded RNA. Enhances RNA unwinding activity of DDX39A. May participate in important transcriptional or translational control of cell growth, metabolism and carcinogenesis.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
356505170	189	PREDICTED: uncharacterized protein LOC10	0.842	0.936	0.553	1e-45
225439793	218	PREDICTED: uncharacterized protein LOC10	0.757	0.729	0.611	2e-43
356572381	198	PREDICTED: uncharacterized protein LOC10	0.880	0.934	0.532	8e-43
297741508	120	unnamed protein product [Vitis vinifera]	0.528	0.925	0.666	1e-34
449448693	204	PREDICTED: uncharacterized protein LOC10	0.728	0.75	0.540	4e-34
224069298	192	predicted protein [Populus trichocarpa]	0.566	0.619	0.672	8e-34
297810363	214	hypothetical protein ARALYDRAFT_487051 [	0.647	0.635	0.608	2e-33
15241954	214	uncharacterized protein [Arabidopsis tha	0.961	0.943	0.470	7e-32
357510501	196	hypothetical protein MTR_7g100260 [Medic	0.585	0.627	0.658	8e-32
224140141	178	predicted protein [Populus trichocarpa]	0.738	0.870	0.489	2e-29

>gi|356505170|ref|XP_003521365.1| PREDICTED: uncharacterized protein LOC100816435 [Glycine max]

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 103/186 (55%), Positives = 134/186 (72%), Gaps = 9/186 (4%)

Query: 11  VATTTDNAKASAEGNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVS 70
           + T TDN    A+ NP   + P + +  P  + +++A        D+K +   T+  P S
Sbjct: 1   MTTPTDNNNNPAQENPNKTLDPTEPDPIPATEDDAAA--------DTKDSDAKTSPPPDS 52

Query: 71  GDADLVTDTQKKIRRAERFGMPVQMSEEEKRNTRAERFGTGSKTQGSEVSKTSEELKRKA 130
           G+   ++D QKK+RRAERFG+ VQ+SE+EKRN+RAERFGTGS +QGSE SK SEELKRKA
Sbjct: 53  GNDAPLSDIQKKMRRAERFGISVQLSEKEKRNSRAERFGTGSASQGSEPSK-SEELKRKA 111

Query: 131 RAERFGLPVPSSVSEEEAKRKARLARFAPYPKTDSVEEDKRKARALRFSKTSSSSVSQVN 190
           RAERFG+P P++ S+EEAK+KARLARFAP  K D  EEDKRKARALRF+  SS+S++ VN
Sbjct: 112 RAERFGMPSPTTTSDEEAKKKARLARFAPASKVDPQEEDKRKARALRFANPSSTSIANVN 171

Query: 191 GKGNIE 196
           G+G IE
Sbjct: 172 GEGKIE 177

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439793|ref|XP_002276541.1| PREDICTED: uncharacterized protein LOC100249849 [Vitis vinifera]

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/162 (61%), Positives = 120/162 (74%), Gaps = 3/162 (1%)

Query: 52  KNGNDSKTAVTITAVSPVSG---DADLVTDTQKKIRRAERFGMPVQMSEEEKRNTRAERF 108
           K  ++SK   +  A  PV+    +   V+D QKKIRRAERFGMPVQ+SEEEKRN+RAERF
Sbjct: 57  KEPDESKVGGSAGAADPVASSPTNTATVSDIQKKIRRAERFGMPVQLSEEEKRNSRAERF 116

Query: 109 GTGSKTQGSEVSKTSEELKRKARAERFGLPVPSSVSEEEAKRKARLARFAPYPKTDSVEE 168
           GTG    GS+ SK SEELKRKARAERFGLP+ S+ ++EE+K+KARLARFA   KTD++EE
Sbjct: 117 GTGPTVHGSDGSKKSEELKRKARAERFGLPLDSAPTDEESKKKARLARFASVSKTDTLEE 176

Query: 169 DKRKARALRFSKTSSSSVSQVNGKGNIEVEAAAITGEADGVA 210
           DK+KARA+RFS   S S+SQVNGKG       AI G+A G A
Sbjct: 177 DKKKARAIRFSNPPSDSLSQVNGKGEDIEPKTAIAGKASGGA 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572381|ref|XP_003554347.1| PREDICTED: uncharacterized protein LOC100791970 [Glycine max]

 Score =  179 bits (453), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 99/186 (53%), Positives = 129/186 (69%), Gaps = 1/186 (0%)

Query: 11  VATTTDNAKASAEGNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVS 70
           +AT TDN    A+ NP   + P + +  P  +  ++             A  IT+  P S
Sbjct: 1   MATPTDNNNNPAQENPNKTLDPTEPDPIPATEDATATKGSDAKDPADADADAITSPPPDS 60

Query: 71  GDADLVTDTQKKIRRAERFGMPVQMSEEEKRNTRAERFGTGSKTQGSEVSKTSEELKRKA 130
           G+   ++D QKK+RRAERFG+ VQ+SE+EKRN+RAERFGT S +QGSE SK SE+LKRKA
Sbjct: 61  GNDAPLSDIQKKMRRAERFGISVQLSEKEKRNSRAERFGTVSASQGSEPSK-SEDLKRKA 119

Query: 131 RAERFGLPVPSSVSEEEAKRKARLARFAPYPKTDSVEEDKRKARALRFSKTSSSSVSQVN 190
           RAERFG+P P++ ++EEAK+KARLARFAP  K D  EEDKRKARALRF+  SS+S++ VN
Sbjct: 120 RAERFGMPSPTTTADEEAKKKARLARFAPASKVDPQEEDKRKARALRFANPSSTSIANVN 179

Query: 191 GKGNIE 196
           G+  IE
Sbjct: 180 GEAKIE 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741508|emb|CBI32640.3| unnamed protein product [Vitis vinifera]

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/120 (66%), Positives = 95/120 (79%)

Query: 91  MPVQMSEEEKRNTRAERFGTGSKTQGSEVSKTSEELKRKARAERFGLPVPSSVSEEEAKR 150
           MPVQ+SEEEKRN+RAERFGTG    GS+ SK SEELKRKARAERFGLP+ S+ ++EE+K+
Sbjct: 1   MPVQLSEEEKRNSRAERFGTGPTVHGSDGSKKSEELKRKARAERFGLPLDSAPTDEESKK 60

Query: 151 KARLARFAPYPKTDSVEEDKRKARALRFSKTSSSSVSQVNGKGNIEVEAAAITGEADGVA 210
           KARLARFA   KTD++EEDK+KARA+RFS   S S+SQVNGKG       AI G+A G A
Sbjct: 61  KARLARFASVSKTDTLEEDKKKARAIRFSNPPSDSLSQVNGKGEDIEPKTAIAGKASGGA 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448693|ref|XP_004142100.1| PREDICTED: uncharacterized protein LOC101221301 [Cucumis sativus]

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 86/159 (54%), Positives = 114/159 (71%), Gaps = 6/159 (3%)

Query: 52  KNGNDSKTAVTITAVSPVSGDADLVTDTQKKIRRAERFGMPVQMSEEEKRNTRAERFGTG 111
           K G++SK A   +A      D   V+D Q+K+RRAERFG+ VQ+SEEEKRN+RAERFG G
Sbjct: 52  KEGDESKCAGKPSA----EDDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMG 107

Query: 112 SKTQGSEVSKTSEELKRKARAERFGLPVPSSVSEEEAKRKARLARFAPYPKTDSVEEDKR 171
           + T G   S  +EE+KRKARAERFGL   S  +++EAK+KARLARF+   K D  EE+KR
Sbjct: 108 TTTNGLGASNKTEEVKRKARAERFGLSA-SVTTDDEAKKKARLARFSSTSKPDPQEEEKR 166

Query: 172 KARALRFSKTSSSSVSQVNGKGNIEVEAAAITGEADGVA 210
           KARA+RFS  + +S++QV+GKGN+E   A + G++ G A
Sbjct: 167 KARAIRFSNPTPNSLTQVDGKGNVET-IADVAGKSGGGA 204

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069298|ref|XP_002326323.1| predicted protein [Populus trichocarpa] gi|222833516|gb|EEE71993.1| predicted protein [Populus trichocarpa]

 Score =  149 bits (376), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 82/122 (67%), Positives = 99/122 (81%), Gaps = 3/122 (2%)

Query: 77  TDTQKKIRRAERFGMPVQMSEEEKRNTRAERFGTGSKTQGSEVS--KTSEELKRKARAER 134
           TDT KKIRRAERFG+ VQ+SE+EKRN+RAERFGTGS+   SE    K SEELKRKARAER
Sbjct: 71  TDTDKKIRRAERFGITVQLSEKEKRNSRAERFGTGSQGPESESDSVKKSEELKRKARAER 130

Query: 135 FGLPVPSSVSEEEAKRKARLARFAPYPKTDSVEEDKRKARALRFSKTSSSSVSQVNGKGN 194
           FG+PVP + + EE K+KAR  R AP PK D++EE+KRKARALRFS++SS S   +NGKG+
Sbjct: 131 FGIPVPPTATAEETKKKARHERLAPAPKIDALEENKRKARALRFSQSSSDS-LSMNGKGD 189

Query: 195 IE 196
           +E
Sbjct: 190 LE 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810363|ref|XP_002873065.1| hypothetical protein ARALYDRAFT_487051 [Arabidopsis lyrata subsp. lyrata] gi|297318902|gb|EFH49324.1| hypothetical protein ARALYDRAFT_487051 [Arabidopsis lyrata subsp. lyrata]

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/143 (60%), Positives = 106/143 (74%), Gaps = 7/143 (4%)

Query: 70  SGDADLVTDTQKKIRRAERFGMPVQMSEEEKRNTRAERFGT--GSKTQGSEVSKTSEELK 127
           SGD   V D QKKIRRAERFG+ V+++EEEKRN+RAERFGT   +   GSE +K +EELK
Sbjct: 72  SGDISPVDDIQKKIRRAERFGVSVKLTEEEKRNSRAERFGTVAAAVVNGSEGTKKAEELK 131

Query: 128 RKARAERFGLPVPSSV---SEEEAKRKARLARFAPYPKTDSVEEDKRKARALRFSKTSSS 184
           RKARA+RFG+P  ++    +EEEAK+KARLARF    K DS EEDKRKARALRFSK +S+
Sbjct: 132 RKARADRFGVPAATTSTDNTEEEAKKKARLARFGKETKVDSAEEDKRKARALRFSKGASA 191

Query: 185 SV-SQVNGKGNIEVEAAAITGEA 206
              S + GK NI  E AA++G A
Sbjct: 192 DASSDLPGKQNIGKE-AAVSGNA 213

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241954|ref|NP_195897.1| uncharacterized protein [Arabidopsis thaliana] gi|14190431|gb|AAK55696.1|AF378893_1 AT5g02770/F9G14_80 [Arabidopsis thaliana] gi|7413552|emb|CAB86031.1| putative protein [Arabidopsis thaliana] gi|15215889|gb|AAK91488.1| AT5g02770/F9G14_80 [Arabidopsis thaliana] gi|62320777|dbj|BAD95440.1| putative protein [Arabidopsis thaliana] gi|332003132|gb|AED90515.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  142 bits (359), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 102/217 (47%), Positives = 129/217 (59%), Gaps = 15/217 (6%)

Query: 1   MAADAEKLATVATTTDNAKASAEGNPKNNVGPMDLEQNPGADVNSSAVE------VKKNG 54
           MA + EK+   AT  +    S   NPK  V     E +   D+    V+       KK  
Sbjct: 1   MATNGEKV--TATVVNGGGLSTGENPKKIVDLNTTELDRTDDILDGEVKGFSDSGEKKEE 58

Query: 55  NDSKTAVTITAVSPVSGDADLVTDTQKKIRRAERFGMPVQMSEEEKRNTRAERFGT--GS 112
            DS    +   V   SGD   V D QKKIRRAERFG+ V+++EEEKRN+RAERFGT   +
Sbjct: 59  TDSNGIGSTAGVD--SGDISPVDDIQKKIRRAERFGVSVKLTEEEKRNSRAERFGTVAAA 116

Query: 113 KTQGSEVSKTSEELKRKARAERFGLPVPSSV---SEEEAKRKARLARFAPYPKTDSVEED 169
              GSE +K +EELKRKARA+RFG+P  +S    +EEEAK+KARLARF    K DS EE+
Sbjct: 117 VVNGSEGTKKAEELKRKARADRFGVPSATSTTDKTEEEAKKKARLARFGKETKVDSAEEN 176

Query: 170 KRKARALRFSKTSSSSVSQVNGKGNIEVEAAAITGEA 206
           KRKARALRFSK +S+  S    +  I  + AA++G A
Sbjct: 177 KRKARALRFSKEASADASSDLPEKQIIGKEAAVSGSA 213

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510501|ref|XP_003625539.1| hypothetical protein MTR_7g100260 [Medicago truncatula] gi|355500554|gb|AES81757.1| hypothetical protein MTR_7g100260 [Medicago truncatula]

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 83/126 (65%), Positives = 101/126 (80%), Gaps = 3/126 (2%)

Query: 72  DADLVTDTQKKIRRAERFGMPVQMSEEEKRNTRAERFGTGSKTQGSEVSKTSEELKRKAR 131
           DA L +D QKK+RRAERFG+ V++SE+EKRN+RAERFGT S  QG E  K  E+LKRKAR
Sbjct: 61  DAPL-SDVQKKMRRAERFGITVKLSEKEKRNSRAERFGTASVLQGPE-GKKDEDLKRKAR 118

Query: 132 AERFGLPVPSSVSEEEAKRKARLARF-APYPKTDSVEEDKRKARALRFSKTSSSSVSQVN 190
           AERFG+P P+S ++++AK+KARLARF AP  KTD  EEDK+KARALRFS  SS  +SQVN
Sbjct: 119 AERFGMPTPTSAADDDAKKKARLARFAAPGSKTDPAEEDKKKARALRFSNASSKPLSQVN 178

Query: 191 GKGNIE 196
            + NIE
Sbjct: 179 SEANIE 184

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140141|ref|XP_002323443.1| predicted protein [Populus trichocarpa] gi|222868073|gb|EEF05204.1| predicted protein [Populus trichocarpa]

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/190 (48%), Positives = 121/190 (63%), Gaps = 35/190 (18%)

Query: 11  VATTTDN-AKASAEGNPKNNVGPMDLEQ---NPGAD---VNSSAVEV-----KKNGNDSK 58
           +AT TDN + A+ E NP   +    L+    + G D     SS VE+     KK+  +SK
Sbjct: 1   MATKTDNPSTAAVEDNPSETLDTAVLDSTKPDRGEDSTNTASSTVELATEGPKKDSENSK 60

Query: 59  TAVTITAVSPVSGDADLVTDTQKKIRRAERFGMPVQMSEEEKRNTRAERFGTGSKT---- 114
           +A               VTD +KKIRRAERFG+ VQ+SE+EKRN+RAERFGT + T    
Sbjct: 61  SAAP-------------VTDIEKKIRRAERFGITVQLSEQEKRNSRAERFGTSTGTGTGT 107

Query: 115 ----QGSEVS--KTSEELKRKARAERFGLPVPSSVSEEEAKRKARLARFAPYPKTDSVEE 168
               QGSE    K SEELKRKARAERFG+PVP + S+EEAK+K+RL +F P  K++++E+
Sbjct: 108 GSTAQGSESDSVKKSEELKRKARAERFGIPVPPAASDEEAKKKSRLEKFTPAAKSNTLED 167

Query: 169 DKRKARALRF 178
           DKRKARALR+
Sbjct: 168 DKRKARALRY 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:2151271	214	MOS11 "AT5G02770" [Arabidopsis	0.971	0.953	0.437	7.4e-34
UNIPROTKB|P82979	210	SARNP "SAP domain-containing r	0.719	0.719	0.352	1.5e-10
UNIPROTKB|F1PVE3	210	SARNP "Uncharacterized protein	0.719	0.719	0.347	2e-10
UNIPROTKB|F1SPJ5	210	SARNP "Uncharacterized protein	0.719	0.719	0.352	2e-10
UNIPROTKB|Q567R9	150	CIP29 "CIP29 protein" [Homo sa	0.595	0.833	0.392	2.5e-10
UNIPROTKB|Q2TBX1	210	CIP29 "Uncharacterized protein	0.719	0.719	0.341	5e-10
UNIPROTKB|H0YHG0	523	H0YHG0 "Uncharacterized protei	0.719	0.288	0.352	1.5e-09
RGD|1305692	210	Sarnp "SAP domain containing r	0.719	0.719	0.347	2.7e-09
UNIPROTKB|H9L0M1	199	SARNP "Uncharacterized protein	0.714	0.753	0.327	3.2e-09
UNIPROTKB|H9L222	210	SARNP "Uncharacterized protein	0.714	0.714	0.327	7.1e-09

TAIR|locus:2151271 MOS11 "AT5G02770" [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 94/215 (43%), Positives = 121/215 (56%)

Query:     1 MAADAEKLATVATTTDNAKASAEGNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTA 60
             MA + EK+   AT  +    S   NPK  V     E +   D+    V+   +  + K  
Sbjct:     1 MATNGEKVT--ATVVNGGGLSTGENPKKIVDLNTTELDRTDDILDGEVKGFSDSGEKKEE 58

Query:    61 VTITAVSPV----SGDADLVTDTQKKIRRAERFGMPVQMSEEEKRNTRAERFGT--GSKT 114
                  +       SGD   V D QKKIRRAERFG+ V+++EEEKRN+RAERFGT   +  
Sbjct:    59 TDSNGIGSTAGVDSGDISPVDDIQKKIRRAERFGVSVKLTEEEKRNSRAERFGTVAAAVV 118

Query:   115 QGSEVSKTSEELKRKARAERFGLPVPSSVS---EEEAKRKARLARFAPYPKTDSVEEDKR 171
              GSE +K +EELKRKARA+RFG+P  +S +   EEEAK+KARLARF    K DS EE+KR
Sbjct:   119 NGSEGTKKAEELKRKARADRFGVPSATSTTDKTEEEAKKKARLARFGKETKVDSAEENKR 178

Query:   172 KARALRFXXXXXXXXXQVNGKGNIEVEAAAITGEA 206
             KARALRF             +  I  + AA++G A
Sbjct:   179 KARALRFSKEASADASSDLPEKQIIGKEAAVSGSA 213

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IMP

UNIPROTKB|P82979 SARNP "SAP domain-containing ribonucleoprotein" [Homo sapiens (taxid:9606)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 60/170 (35%), Positives = 81/170 (47%)

Query:    20 ASAEGNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVSGDADLVTDT 79
             A  E N ++ +G    E+    +     + VK+     KT V + A   V      +  T
Sbjct:    46 AEEEANEEDVLGDETEEE----ETKPIELPVKEEEPPEKT-VDVAAEKKVVKITSEIPQT 100

Query:    80 QKKIRRAERFGMPVQMSEEEKRNTRAERFGTGS-KTQG-SEVSKTSEEL-KRKARAERFG 136
             ++  +RAERF +PV +  E K+  RA RFG  S  T+G S  +K    L K K RA+RFG
Sbjct:   101 ERMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDNKPMVNLDKLKERAQRFG 158

Query:   137 LPVPS--SVSEEEAKRKARLARF------APYPKTDSVEEDKRKARALRF 178
             L V S    SE++ K K R  RF      A    T+  E  KRK RA RF
Sbjct:   159 LNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERF 207

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0003676 "nucleic acid binding" evidence=NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|F1PVE3 SARNP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 59/170 (34%), Positives = 81/170 (47%)

Query:    20 ASAEGNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVSGDADLVTDT 79
             A  E N ++ +G    E+ P        + VK+     KT    T    V   ++ +  T
Sbjct:    46 AEEEANEEDVLGDETEEEEP----KPIELPVKEEEPPEKTVDVATEKKVVKITSE-IPQT 100

Query:    80 QKKIRRAERFGMPVQMSEEEKRNTRAERFGTGS-KTQG-SEVSKTSEEL-KRKARAERFG 136
             ++  +RAERF +PV +  E K+  RA RFG  S  ++G S  +K    L K K RA+RFG
Sbjct:   101 ERMQKRAERFNVPVSL--ESKKAARAARFGISSVSSKGLSSDAKPMVNLDKLKERAQRFG 158

Query:   137 LPVPS--SVSEEEAKRKARLARF------APYPKTDSVEEDKRKARALRF 178
             L V S    SE++ K K R  RF      A    T+  E  KRK RA RF
Sbjct:   159 LNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERF 207

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1SPJ5 SARNP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 60/170 (35%), Positives = 81/170 (47%)

Query:    20 ASAEGNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVSGDADLVTDT 79
             A  E N ++ +G    E+ P        + VK+     KT V + A   V      +  T
Sbjct:    46 AEEEANEEDVLGDETEEEEP----KPIELPVKEEEPPEKT-VDVAAEKKVVKITSEMPQT 100

Query:    80 QKKIRRAERFGMPVQMSEEEKRNTRAERFGTGS-KTQG-SEVSKTSEEL-KRKARAERFG 136
             ++  +RAERF +PV +  E K+  RA RFG  S  ++G S  +K    L K K RA+RFG
Sbjct:   101 ERMQKRAERFNVPVSL--ESKKAARAARFGISSVPSKGLSSDTKPMVNLDKLKERAQRFG 158

Query:   137 LPVPS--SVSEEEAKRKARLARF------APYPKTDSVEEDKRKARALRF 178
             L V S    SE++ K K R  RF      A    T+  E  KRK RA RF
Sbjct:   159 LNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERF 207

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q567R9 CIP29 "CIP29 protein" [Homo sapiens (taxid:9606)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 55/140 (39%), Positives = 70/140 (50%)

Query:    50 VKKNGNDSKTAVTITAVSPVSGDADLVTDTQKKIRRAERFGMPVQMSEEEKRNTRAERFG 109
             VK+     KT V + A   V      +  T++  +RAERF +PV +  E K+  RA RFG
Sbjct:    12 VKEEEPPEKT-VDVAAEKKVVKITSEIPQTERMQKRAERFNVPVSL--ESKKAARAARFG 68

Query:   110 TGS-KTQG-SEVSKTSEEL-KRKARAERFGLPVPS--SVSEEEAKRKARLARF------A 158
               S  T+G S  +K    L K K RA+RFGL V S    SE++ K K R  RF      A
Sbjct:    69 ISSVPTKGLSSDNKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTSSA 128

Query:   159 PYPKTDSVEEDKRKARALRF 178
                 T+  E  KRK RA RF
Sbjct:   129 GTGTTEDTEAKKRK-RAERF 147

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|Q2TBX1 CIP29 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 145 (56.1 bits), Expect = 5.0e-10, P = 5.0e-10
 Identities = 58/170 (34%), Positives = 77/170 (45%)

Query:    20 ASAEGNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVSGDADLVTDT 79
             A  E N ++ +G    E+ P        + VK+     KT V + A   V      +  T
Sbjct:    46 AEEEANEEDVLGDETEEEEP----KPLELPVKEEEPPEKT-VDVAAEKKVVKITSEIPQT 100

Query:    80 QKKIRRAERFGMPVQMSEEEKRNTRAERFGTG---SKTQGSEVSKTSEELKRKARAERFG 136
             ++  +RAERF +PV +  E K+  RA RFG     SK   S+        K K RA+RFG
Sbjct:   101 ERMQKRAERFNVPVSL--ESKKAARAARFGISPVPSKGLSSDTKPMVNLDKLKERAQRFG 158

Query:   137 LPVPS--SVSEEEAKRKARLARF------APYPKTDSVEEDKRKARALRF 178
             L V S    SE++ K K R  RF      A    T+  E  KRK RA RF
Sbjct:   159 LNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERF 207

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|H0YHG0 H0YHG0 "Uncharacterized protein" [Homo sapiens (taxid:9606)]

 Score = 148 (57.2 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 60/170 (35%), Positives = 81/170 (47%)

Query:    20 ASAEGNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVSGDADLVTDT 79
             A  E N ++ +G    E+    +     + VK+     KT V + A   V      +  T
Sbjct:   359 AEEEANEEDVLGDETEEE----ETKPIELPVKEEEPPEKT-VDVAAEKKVVKITSEIPQT 413

Query:    80 QKKIRRAERFGMPVQMSEEEKRNTRAERFGTGS-KTQG-SEVSKTSEEL-KRKARAERFG 136
             ++  +RAERF +PV +  E K+  RA RFG  S  T+G S  +K    L K K RA+RFG
Sbjct:   414 ERMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDNKPMVNLDKLKERAQRFG 471

Query:   137 LPVPS--SVSEEEAKRKARLARF------APYPKTDSVEEDKRKARALRF 178
             L V S    SE++ K K R  RF      A    T+  E  KRK RA RF
Sbjct:   472 LNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERF 520

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

RGD|1305692 Sarnp "SAP domain containing ribonucleoprotein" [Rattus norvegicus (taxid:10116)]

 Score = 142 (55.0 bits), Expect = 2.7e-09, P = 2.7e-09
 Identities = 59/170 (34%), Positives = 80/170 (47%)

Query:    20 ASAEGNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVSGDADLVTDT 79
             A  E N ++ +G    E+ P        + VK+     K  V + +   V      +  T
Sbjct:    46 AEEEANEEDVLGDETEEEEP----KPIELPVKEEEPPEKV-VDMASEKKVVKITSGIPQT 100

Query:    80 QKKIRRAERFGMPVQMSEEEKRNTRAERFGTGS-KTQG-SEVSKTSEEL-KRKARAERFG 136
             ++  +RAERF +PV +  E K+  RA RFG  S  T+G S  +K    L K K RA+RFG
Sbjct:   101 ERMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDTKPMVNLDKLKERAQRFG 158

Query:   137 LPVPS--SVSEEEAKRKARLARF------APYPKTDSVEEDKRKARALRF 178
             L V S    SE++ K K R  RF      A    T+  E  KRK RA RF
Sbjct:   159 LNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERF 207

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=ISO

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=ISO

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0050733 "RS domain binding" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|H9L0M1 SARNP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 140 (54.3 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 56/171 (32%), Positives = 82/171 (47%)

Query:    20 ASAEGNPKNNVGP-MDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVSGDADLVTD 78
             A  E N ++ +G  ++ E+   A+  +   E      D  T   +  ++        ++ 
Sbjct:    35 AEEEANEEDVLGEEIEEEEQKPAEPPTKVEEPPVKSPDVSTEKKVVKITSE------ISQ 88

Query:    79 TQKKIRRAERFGMPVQMSEEEKRNTRAERFGTGS-KTQG-SEVSKTSEEL-KRKARAERF 135
              ++  +RAERF +PV +  E K+  RA RFG  +  T+G S  SK +  + K K RA+RF
Sbjct:    89 MERMQKRAERFNVPVSL--ESKKAARAARFGLATVSTKGLSADSKPTVNMDKLKERAQRF 146

Query:   136 GLPVPS--SVSEEEAKRKARLARF------APYPKTDSVEEDKRKARALRF 178
             GL V S    SEE+ K K R  RF      A    T+  E  KRK RA RF
Sbjct:   147 GLNVSSLSKKSEEDEKLKKRKERFGIVTSSAGAGATEDTEAKKRK-RAERF 196

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

UNIPROTKB|H9L222 SARNP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 140 (54.3 bits), Expect = 7.1e-09, P = 7.1e-09
 Identities = 56/171 (32%), Positives = 82/171 (47%)

Query:    20 ASAEGNPKNNVGP-MDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVSGDADLVTD 78
             A  E N ++ +G  ++ E+   A+  +   E      D  T   +  ++        ++ 
Sbjct:    46 AEEEANEEDVLGEEIEEEEQKPAEPPTKVEEPPVKSPDVSTEKKVVKITSE------ISQ 99

Query:    79 TQKKIRRAERFGMPVQMSEEEKRNTRAERFGTGS-KTQG-SEVSKTSEEL-KRKARAERF 135
              ++  +RAERF +PV +  E K+  RA RFG  +  T+G S  SK +  + K K RA+RF
Sbjct:   100 MERMQKRAERFNVPVSL--ESKKAARAARFGLATVSTKGLSADSKPTVNMDKLKERAQRF 157

Query:   136 GLPVPS--SVSEEEAKRKARLARF------APYPKTDSVEEDKRKARALRF 178
             GL V S    SEE+ K K R  RF      A    T+  E  KRK RA RF
Sbjct:   158 GLNVSSLSKKSEEDEKLKKRKERFGIVTSSAGAGATEDTEAKKRK-RAERF 207

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023087001 SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (218 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
KOG4259	260	consensus Putative nucleic acid-binding protein Hc	99.79
KOG4259	260	consensus Putative nucleic acid-binding protein Hc	99.5

>KOG4259 consensus Putative nucleic acid-binding protein Hcc-1/proliferation associated cytokine-inducible protein, contains SAP domain [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=3.7e-19  Score=156.19  Aligned_cols=125  Identities=34%  Similarity=0.421  Sum_probs=80.5

Q ss_pred             CCCCCcceeccCCCCCCCCCCCCChHHHHHHHHh---hhCCCCCCCH---HHHHHHHHhhhCCCCCCCC-------C---
Q 028341           54 GNDSKTAVTITAVSPVSGDADLVTDTQKKIRRAE---RFGMPVQMSE---EEKRNTRAERFGTGSKTQG-------S---  117 (210)
Q Consensus        54 ~~~~kk~vkIt~~~~~~~~~~~lSd~EKk~~RAe---RFGip~~lse---~eKkk~RAeRFGl~~~~~~-------s---  117 (210)
                      ...++++|.|+++.    -............|++   ||+.|+++-+   .+++.+||+||||+.....       +   
T Consensus       108 ~~~Eks~v~~tstg----k~~E~paet~~~srae~~~rf~~Pvvae~k~a~e~laaRAkRFgIp~d~t~i~sadnKas~a  183 (260)
T KOG4259|consen  108 ISKEKSQVPETSTG----KEAEEPAETTEESRAEVSNRFSSPVVAEEKTAQEKLAARAKRFGIPVDDTQIKSADNKASSA  183 (260)
T ss_pred             hhhccccccccccc----cccccchhhhhhhhcccccccCCCcccccccchHHHHHHHHhcCCCCchHHHHhhccchhhh
Confidence            44577777777743    1123344555666666   7777665533   3666777777776643210       0   


Q ss_pred             -----CcccchHHHHHHHHHHhhCCCCCCC--cc---hHHHHHHHHhhhcCCCCCCCchHHHHH-HHHHhccCCCCC
Q 028341          118 -----EVSKTSEELKRKARAERFGLPVPSS--VS---EEEAKRKARLARFAPYPKTDSVEEDKR-KARALRFSKTSS  183 (210)
Q Consensus       118 -----~~~K~~eeeKlKkRAERFG~~~~~~--~~---~eeeKkkkRaERFG~~~~~d~~ee~Kk-kkRaeRFg~~~~  183 (210)
                           ........+++|.||+|||+++++.  ..   +-..|+++|++|||. .-.+...|+|+ ++|+||||+..+
T Consensus       184 ~~fG~~~~~p~a~dklk~rAqrfg~~v~s~Sr~s~~de~~~kl~arkkRfgg-titde~tEAKKaRaRaERFgtA~~  259 (260)
T KOG4259|consen  184 ANFGNKIQQPLASDKLKNRAQRFGPQVRSNSRSSQRDENAPKLSARKKRFGG-TITDEPTEAKKARARAERFGTAAK  259 (260)
T ss_pred             hhcCCcccchhhhHHHHHHHHhcCCCCCcccccCccccccchhhhhHHhcCC-CCCCchhhHHHHHHHHHHhcccCC
Confidence                 0111245679999999999999865  12   223599999999994 23455677777 999999998765

>KOG4259 consensus Putative nucleic acid-binding protein Hcc-1/proliferation associated cytokine-inducible protein, contains SAP domain [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=4.1e-14  Score=124.65  Aligned_cols=87  Identities=37%  Similarity=0.524  Sum_probs=61.6

Q ss_pred             CCCCChHHHHHHHHhhhCCCCCC-----------------------CHHHHHHHHHhhhCCCCCCCCCCcccch-HHHHH
Q 028341           73 ADLVTDTQKKIRRAERFGMPVQM-----------------------SEEEKRNTRAERFGTGSKTQGSEVSKTS-EELKR  128 (210)
Q Consensus        73 ~~~lSd~EKk~~RAeRFGip~~l-----------------------se~eKkk~RAeRFGl~~~~~~s~~~K~~-eeeKl  128 (210)
                      .-+.+.++++.+||+|||||+..                       -..++++.||+|||+..+.. +..++.. ..-+|
T Consensus       148 ae~k~a~e~laaRAkRFgIp~d~t~i~sadnKas~a~~fG~~~~~p~a~dklk~rAqrfg~~v~s~-Sr~s~~de~~~kl  226 (260)
T KOG4259|consen  148 AEEKTAQEKLAARAKRFGIPVDDTQIKSADNKASSAANFGNKIQQPLASDKLKNRAQRFGPQVRSN-SRSSQRDENAPKL  226 (260)
T ss_pred             cccccchHHHHHHHHhcCCCCchHHHHhhccchhhhhhcCCcccchhhhHHHHHHHHhcCCCCCcc-cccCccccccchh
Confidence            44566778999999999999632                       13789999999999986532 2222211 22489


Q ss_pred             HHHHHhhCCCCCCCcchHHHHH-HHHhhhcCCCCC
Q 028341          129 KARAERFGLPVPSSVSEEEAKR-KARLARFAPYPK  162 (210)
Q Consensus       129 KkRAERFG~~~~~~~~~eeeKk-kkRaERFG~~~~  162 (210)
                      ++|++|||-..-  ....+.|+ ++|+||||++++
T Consensus       227 ~arkkRfggtit--de~tEAKKaRaRaERFgtA~~  259 (260)
T KOG4259|consen  227 SARKKRFGGTIT--DEPTEAKKARARAERFGTAAK  259 (260)
T ss_pred             hhhHHhcCCCCC--CchhhHHHHHHHHHHhcccCC
Confidence            999999993322  23456666 999999998653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00