Citrus Sinensis ID: 028344

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAALSLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQHGEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNSGLWGNSSVPQEGGIAMGQPQFPPQRTQEPVFVHEDTYMRRQFT
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEcccccHHEccc
Coil and Loop (DISEMBL)
MERKVLALCSTVGLLGLLsaatgfgaeatrikgsqvqitsptqcsyprspalglGLTAALSLLIAQVTINVAtgciccrrgphpsnsnwTIALVCFVVSWFTFVIAFLLLLTGAalndqhgeesmyfGNYYCyvvkpgvfaGGAVLSLASVTLGILYYLTLHSaknsglwgnssvpqeggiamgqpqfppqrtqepvfvhedtymrrqft
Flexible Loop (DISEMBL)
MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAALSLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQHGEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNSGLWGNSSVPQEGGIAMGQpqfppqrtqepvfvheDTYMRRQFT
Low Complexity Region (SEG)
MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPalglgltaalslliaQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQHGEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNSGLWGNSSVPQEGGIAMGQPQFPPQRTQEPVFVHEDTYMRRQFT
Disordered region (IsUnstruct)
****VLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAALSLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQHGEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNSGLWG***************************************
Disordered Region (DISOPRED)
***KVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAALSLLIAQVTINVATGCICC**********WTIALVCFVVSWFTFVIAFLLLLTGAALNDQHGEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTL**************************************HEDTYM**QF*
Disordered Region (DISEMBL)
MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAALSLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQHGEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNSGLWGNSSVPQEGGIAMGQPQFPPQRTQEPVFVHEDTYMRRQFT
Disordered Region (DISPRO)
**RKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAALSLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQHGEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKN******************QPQF***RTQEPVFVHEDTYMRRQFT
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAALSLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQHGEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNSGLWGNSSVPQEGGIAMGQPQFPPQRTQEPVFVHEDTYMRRQFT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
255557947	210	conserved hypothetical protein [Ricinus	0.995	0.995	0.819	6e-96
224145908	210	predicted protein [Populus trichocarpa]	0.995	0.995	0.791	2e-91
388509534	211	unknown [Medicago truncatula]	1.0	0.995	0.725	4e-86
225454852	217	PREDICTED: uncharacterized protein LOC10	1.0	0.967	0.764	1e-84
449451825	211	PREDICTED: uncharacterized protein LOC10	0.985	0.981	0.759	4e-84
388509984	207	unknown [Lotus japonicus]	0.985	1.0	0.714	1e-83
356538471	207	PREDICTED: uncharacterized protein LOC10	0.985	1.0	0.690	1e-79
363806836	207	uncharacterized protein LOC100787046 pre	0.985	1.0	0.680	2e-78
297807741	212	hypothetical protein ARALYDRAFT_488583 [	0.995	0.985	0.633	1e-74
18418215	209	uncharacterized protein [Arabidopsis tha	0.980	0.985	0.629	1e-72

>gi|255557947|ref|XP_002520002.1| conserved hypothetical protein [Ricinus communis] gi|223540766|gb|EEF42326.1| conserved hypothetical protein [Ricinus communis]

 Score =  355 bits (911), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 173/211 (81%), Positives = 188/211 (89%), Gaps = 2/211 (0%)

Query: 1   MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAAL 60
           MER    LC  VG LGLLSAATGFGAEATRIKGS+VQ TS TQC+YPRSPAL LGLT+A+
Sbjct: 1   MERNAFVLCCVVGFLGLLSAATGFGAEATRIKGSEVQFTSATQCTYPRSPALALGLTSAV 60

Query: 61  SLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQH 120
           +L+IAQV INVATGCICC+R PHPSNSNWTIALVCFVVSWFTFVI+FLLLLTGAALNDQH
Sbjct: 61  ALMIAQVLINVATGCICCKRSPHPSNSNWTIALVCFVVSWFTFVISFLLLLTGAALNDQH 120

Query: 121 GEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKN-SGLWGNSSVPQEG 179
           GEESMYFG+YYCYVVKPGVFAGGAVL+LASVTLGILYYLTL+S+K+ +G W N  V    
Sbjct: 121 GEESMYFGSYYCYVVKPGVFAGGAVLALASVTLGILYYLTLNSSKSVNGPWANPPV-SNS 179

Query: 180 GIAMGQPQFPPQRTQEPVFVHEDTYMRRQFT 210
           GIAMGQPQF PQ TQ+PVFVHEDTYMRRQFT
Sbjct: 180 GIAMGQPQFTPQSTQDPVFVHEDTYMRRQFT 210

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145908|ref|XP_002325807.1| predicted protein [Populus trichocarpa] gi|222862682|gb|EEF00189.1| predicted protein [Populus trichocarpa]

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 167/211 (79%), Positives = 183/211 (86%), Gaps = 2/211 (0%)

Query: 1   MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAAL 60
           MERK L LCS VGLLGLLS ATGFGAEATRIKGS+VQ TS TQC+YPRSPALGLGLTAA+
Sbjct: 1   MERKALVLCSVVGLLGLLSVATGFGAEATRIKGSEVQFTSATQCTYPRSPALGLGLTAAV 60

Query: 61  SLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQH 120
           +L IAQV INVATGC+CC+R  H SNSNWT A VCFV+SWFTFVIAFLLLLTGAALN+QH
Sbjct: 61  ALTIAQVIINVATGCVCCKRSQHSSNSNWTTAFVCFVISWFTFVIAFLLLLTGAALNNQH 120

Query: 121 GEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNSGL-WGNSSVPQEG 179
           GEE+MYFGNYYCYVVKPGVFAGGAVL+ ASV LGIL YLTL+SAK+S   W N  +  + 
Sbjct: 121 GEETMYFGNYYCYVVKPGVFAGGAVLAFASVALGILCYLTLNSAKDSNDPWPNPPLSNQS 180

Query: 180 GIAMGQPQFPPQRTQEPVFVHEDTYMRRQFT 210
           GIAMGQPQF P  TQ+PVFVHEDTY+RRQFT
Sbjct: 181 GIAMGQPQFAPH-TQDPVFVHEDTYIRRQFT 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509534|gb|AFK42833.1| unknown [Medicago truncatula]

 Score =  323 bits (827), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 153/211 (72%), Positives = 176/211 (83%), Gaps = 1/211 (0%)

Query: 1   MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAAL 60
           MERKV+ +C  VG LGLLSAAT F AEATRIKG Q+Q T+P QC YPRSPAL LGLTAAL
Sbjct: 1   MERKVMIVCCIVGFLGLLSAATSFAAEATRIKGYQIQFTNPNQCIYPRSPALPLGLTAAL 60

Query: 61  SLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQH 120
           SL+I+Q+ INV+TGCICCR+     +SNWT+AL CFV+SWFT+VIAFLLLLTGAALNDQ 
Sbjct: 61  SLMISQIVINVSTGCICCRKSSRIPDSNWTVALACFVLSWFTYVIAFLLLLTGAALNDQR 120

Query: 121 GEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNSGL-WGNSSVPQEG 179
           GEES+YFG YYCYVVKPGVFAGGA+LSLASV  GI+YY+TL   KN+   +G+SS P  G
Sbjct: 121 GEESVYFGTYYCYVVKPGVFAGGAILSLASVVFGIVYYITLMEGKNARTPFGDSSYPNRG 180

Query: 180 GIAMGQPQFPPQRTQEPVFVHEDTYMRRQFT 210
            IAMGQPQ P Q +Q+PVFVHEDTY+RRQFT
Sbjct: 181 TIAMGQPQIPTQTSQDPVFVHEDTYIRRQFT 211

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454852|ref|XP_002277138.1| PREDICTED: uncharacterized protein LOC100252883 [Vitis vinifera] gi|297737365|emb|CBI26566.3| unnamed protein product [Vitis vinifera]

 Score =  317 bits (813), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 166/217 (76%), Positives = 179/217 (82%), Gaps = 7/217 (3%)

Query: 1   MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAAL 60
           MER+ L LC+ VG LGLLSAA GF AEA RIKGSQVQ +S T C+YPRSPAL LGLTAA+
Sbjct: 1   MERRSLVLCTFVGFLGLLSAALGFAAEAKRIKGSQVQFSSSTACTYPRSPALPLGLTAAV 60

Query: 61  SLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQH 120
           +L+IAQV IN+ATGCICCRRGPHPSNSNWT+AL+CFVVSWFTFVIAFLLLLTGAALNDQH
Sbjct: 61  ALMIAQVMINIATGCICCRRGPHPSNSNWTLALICFVVSWFTFVIAFLLLLTGAALNDQH 120

Query: 121 GEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKN-SGLWGNSSVPQE- 178
           GEESMYFGNYYCYVVKPGVFAG AVLSLASVTLGILYYLTL SAK  +  W     P + 
Sbjct: 121 GEESMYFGNYYCYVVKPGVFAGAAVLSLASVTLGILYYLTLSSAKERNDPWPGPVAPNQA 180

Query: 179 ---GGIAMG--QPQFPPQRTQEPVFVHEDTYMRRQFT 210
              GGIAMG  Q        Q+PVFVHEDTYMRRQFT
Sbjct: 181 QVGGGIAMGQPQFPPQNPPNQDPVFVHEDTYMRRQFT 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451825|ref|XP_004143661.1| PREDICTED: uncharacterized protein LOC101216661 [Cucumis sativus]

 Score =  316 bits (809), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 161/212 (75%), Positives = 185/212 (87%), Gaps = 5/212 (2%)

Query: 1   MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAAL 60
           MERKVL +CS VGLLG+LSA TGF AEATRIKGSQVQ  S ++C+YPRSPA+GLGLTAA+
Sbjct: 1   MERKVLVVCSVVGLLGILSAVTGFVAEATRIKGSQVQFISTSECAYPRSPAMGLGLTAAI 60

Query: 61  SLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQH 120
           SLLIAQ+ +NV++GCICC+R P+PSN NW IAL+ FV+SWF+FVIAFLLLLTGAALNDQH
Sbjct: 61  SLLIAQLIVNVSSGCICCKRSPNPSNPNWKIALLSFVISWFSFVIAFLLLLTGAALNDQH 120

Query: 121 GEESMYFGN--YYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAK-NSGLWGNSSVPQ 177
           G  +MYFGN  YYCYVVKPGVFAGGA+LSLASV L I+YYLTL+ AK NS LWGNS+  Q
Sbjct: 121 GGGTMYFGNYYYYCYVVKPGVFAGGAILSLASVLLAIVYYLTLNLAKNNSPLWGNSAPAQ 180

Query: 178 EGGIAMGQPQFPPQRTQEPVFVHEDTYMRRQF 209
             GIA+GQPQFPPQ TQ+PVFVHEDTY RRQ+
Sbjct: 181 --GIALGQPQFPPQNTQQPVFVHEDTYARRQY 210

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509984|gb|AFK43058.1| unknown [Lotus japonicus]

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 150/210 (71%), Positives = 175/210 (83%), Gaps = 3/210 (1%)

Query: 1   MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAAL 60
           ME+KVL +C  VG LGLL+AAT FGAEATRIKGSQVQ  +  QC YPRSPAL LG TAA+
Sbjct: 1   MEKKVLVVCFVVGFLGLLAAATSFGAEATRIKGSQVQFITSDQCMYPRSPALPLGFTAAM 60

Query: 61  SLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQH 120
           +L+I+Q+ INVATGCICCR+     +SNW +AL+CFV+ WFTFV+AFLLLLTGAALNDQ 
Sbjct: 61  ALMISQIIINVATGCICCRKNAQIPDSNWRVALICFVLCWFTFVMAFLLLLTGAALNDQR 120

Query: 121 GEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNSGLWGNSSVPQEGG 180
           G+ESMYFG+YYCYVVKPGVFA GA+LSLASV  GI+YY+TL   K++G  G+SS P +G 
Sbjct: 121 GQESMYFGSYYCYVVKPGVFATGAMLSLASVAFGIIYYITLTKGKSAG--GDSSYPNQGN 178

Query: 181 IAMGQPQFPPQRTQEPVFVHEDTYMRRQFT 210
           IAMGQPQ PPQ TQ PVFVHEDTY+RRQFT
Sbjct: 179 IAMGQPQIPPQSTQ-PVFVHEDTYIRRQFT 207

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538471|ref|XP_003537727.1| PREDICTED: uncharacterized protein LOC100804333 [Glycine max]

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 145/210 (69%), Positives = 169/210 (80%), Gaps = 3/210 (1%)

Query: 1   MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAAL 60
           MERKVL LCS V  LGLLSAAT FGAEATRIK SQV   +P QC+YPRSPAL LGL AA+
Sbjct: 1   MERKVLILCSVVAFLGLLSAATSFGAEATRIKVSQVHFVTPNQCTYPRSPALPLGLIAAV 60

Query: 61  SLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQH 120
           +L+++Q+ INV TGC+CCR+     +SNW +AL CFV+SWFTFVI FLLLLTGAALNDQ 
Sbjct: 61  ALVLSQIIINVGTGCVCCRKNLQIPDSNWKVALACFVLSWFTFVIGFLLLLTGAALNDQR 120

Query: 121 GEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNSGLWGNSSVPQEGG 180
           GEES+YFG YYCYVVKPGVFAGGA+LS+AS   GILYY++L + KN+G+      P +G 
Sbjct: 121 GEESVYFGYYYCYVVKPGVFAGGAILSVASAAFGILYYISL-TEKNNGI--QYPYPNQGV 177

Query: 181 IAMGQPQFPPQRTQEPVFVHEDTYMRRQFT 210
           IAM QPQ P Q +QEPVFVHEDTY+RRQFT
Sbjct: 178 IAMAQPQIPSQTSQEPVFVHEDTYIRRQFT 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806836|ref|NP_001242290.1| uncharacterized protein LOC100787046 precursor [Glycine max] gi|255639313|gb|ACU19954.1| unknown [Glycine max]

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 143/210 (68%), Positives = 164/210 (78%), Gaps = 3/210 (1%)

Query: 1   MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAAL 60
           ME+KVL LC  V  LGLLSAAT FGAEATRIK SQV   +P QC+YPRSPAL  GLTAAL
Sbjct: 1   MEKKVLILCCVVAFLGLLSAATSFGAEATRIKVSQVHFVAPNQCTYPRSPALPPGLTAAL 60

Query: 61  SLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQH 120
           +L+++Q+ INV TGC+CCR+     +SNW +ALVCFV+SW TFVI FLLLLTGAALNDQ 
Sbjct: 61  ALMLSQIIINVGTGCVCCRKNSQIPDSNWKVALVCFVLSWLTFVIGFLLLLTGAALNDQR 120

Query: 121 GEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNSGLWGNSSVPQEGG 180
           GEES+YFG YYCYVVKPGVF GGA+LSLAS   GILYY++L   KN   +     P +G 
Sbjct: 121 GEESVYFGYYYCYVVKPGVFTGGAILSLASDAFGILYYISLTERKNGSQY---PYPNQGV 177

Query: 181 IAMGQPQFPPQRTQEPVFVHEDTYMRRQFT 210
           IAM QPQ P Q +QEPVFVHEDTY+RRQFT
Sbjct: 178 IAMAQPQIPSQTSQEPVFVHEDTYVRRQFT 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807741|ref|XP_002871754.1| hypothetical protein ARALYDRAFT_488583 [Arabidopsis lyrata subsp. lyrata] gi|297317591|gb|EFH48013.1| hypothetical protein ARALYDRAFT_488583 [Arabidopsis lyrata subsp. lyrata]

 Score =  284 bits (727), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 135/213 (63%), Positives = 167/213 (78%), Gaps = 4/213 (1%)

Query: 1   MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQIT---SPTQCSYPRSPALGLGLT 57
           MER+ + +C  + LLGLLSA T F AEATRIK SQV++T   S  +C+YPRSPA  LG T
Sbjct: 1   MERRKVVMCGVLFLLGLLSAVTAFAAEATRIKRSQVKVTVSDSIKKCTYPRSPAFDLGFT 60

Query: 58  AALSLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALN 117
           +AL LL+AQ+ ++V++GC CCR+GP PS SNW I+L+CFVVSWFTFVIAFL+LLTGAALN
Sbjct: 61  SALFLLMAQIIVSVSSGCFCCRKGPAPSRSNWIISLICFVVSWFTFVIAFLVLLTGAALN 120

Query: 118 DQHGEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNSGLWGNSSVPQ 177
           D+H EESM  G Y+CY+VKPGVF+ GAVLSL ++ LGI+YYL L S+K +     +   Q
Sbjct: 121 DEHTEESMNAGTYFCYIVKPGVFSTGAVLSLITIALGIVYYLCLTSSKQNVAATTTGANQ 180

Query: 178 EGGIAMGQPQFPPQRTQEPVFVHEDTYMRRQFT 210
             GIAMGQPQ  P+R ++PVFVHEDTYMRRQFT
Sbjct: 181 GTGIAMGQPQI-PERVEDPVFVHEDTYMRRQFT 212

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18418215|ref|NP_568343.1| uncharacterized protein [Arabidopsis thaliana] gi|14334548|gb|AAK59682.1| unknown protein [Arabidopsis thaliana] gi|21280873|gb|AAM44978.1| unknown protein [Arabidopsis thaliana] gi|332005013|gb|AED92396.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 134/213 (62%), Positives = 166/213 (77%), Gaps = 7/213 (3%)

Query: 1   MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQIT---SPTQCSYPRSPALGLGLT 57
           MER+ + +C  + LLGLLSA T F AEATRIK SQV +T   S T+C+YPRSPA  LG T
Sbjct: 1   MERRKIVMCGVLFLLGLLSAVTAFVAEATRIKRSQVTVTVSDSITKCTYPRSPAFNLGFT 60

Query: 58  AALSLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALN 117
           +AL L++AQ+ ++V++GC CCR+GP PS SNW I+L+CFVVSWFTFVIAFL+LL+GAALN
Sbjct: 61  SALFLMMAQIIVSVSSGCFCCRKGPAPSRSNWIISLICFVVSWFTFVIAFLVLLSGAALN 120

Query: 118 DQHGEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNSGLWGNSSVPQ 177
           D+H EESM  G Y+CY+VKPGVF+ GAVLSL ++ LGI+YYL L S K       ++  Q
Sbjct: 121 DEHTEESMNAGTYFCYIVKPGVFSTGAVLSLVTIALGIVYYLCLTSNKQ---IVAATTTQ 177

Query: 178 EGGIAMGQPQFPPQRTQEPVFVHEDTYMRRQFT 210
             GIAMGQPQ  P+R ++PVFVHEDTYMRRQFT
Sbjct: 178 GTGIAMGQPQI-PERVEDPVFVHEDTYMRRQFT 209

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:2167200	209	AT5G17210 "AT5G17210" [Arabido	0.980	0.985	0.591	5.4e-63
TAIR|locus:2199332	201	AT1G68220 "AT1G68220" [Arabido	0.871	0.910	0.331	1.1e-16
TAIR|locus:505006194	180	AT1G61065 "AT1G61065" [Arabido	0.576	0.672	0.341	1.3e-13
TAIR|locus:505006522	173	AT4G27435 "AT4G27435" [Arabido	0.790	0.959	0.271	8.2e-12
TAIR|locus:2009922	188	AT1G13380 "AT1G13380" [Arabido	0.676	0.755	0.270	5.8e-11
TAIR|locus:2011556	175	AT1G52910 "AT1G52910" [Arabido	0.733	0.88	0.275	3.2e-10
TAIR|locus:2090156	175	AT3G15480 "AT3G15480" [Arabido	0.733	0.88	0.265	3.2e-10
TAIR|locus:2140391	217	AT4G19370 "AT4G19370" [Arabido	0.690	0.668	0.269	4.6e-05
TAIR|locus:2062561	163	AT2G32280 "AT2G32280" [Arabido	0.723	0.932	0.196	0.00034

TAIR|locus:2167200 AT5G17210 "AT5G17210" [Arabidopsis thaliana (taxid:3702)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 126/213 (59%), Positives = 155/213 (72%)

Query:     1 MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQIT---SPTQCSYPRSPXXXXXXX 57
             MER+ + +C  + LLGLLSA T F AEATRIK SQV +T   S T+C+YPRSP       
Sbjct:     1 MERRKIVMCGVLFLLGLLSAVTAFVAEATRIKRSQVTVTVSDSITKCTYPRSPAFNLGFT 60

Query:    58 XXXXXXXXQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALN 117
                     Q+ ++V++GC CCR+GP PS SNW I+L+CFVVSWFTFVIAFL+LL+GAALN
Sbjct:    61 SALFLMMAQIIVSVSSGCFCCRKGPAPSRSNWIISLICFVVSWFTFVIAFLVLLSGAALN 120

Query:   118 DQHGEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNSGLWGNSSVPQ 177
             D+H EESM  G Y+CY+VKPGVF+ GAVLSL ++ LGI+YYL L S K       ++  Q
Sbjct:   121 DEHTEESMNAGTYFCYIVKPGVFSTGAVLSLVTIALGIVYYLCLTSNKQIVA---ATTTQ 177

Query:   178 EGGIAMGQPQFPPQRTQEPVFVHEDTYMRRQFT 210
               GIAMGQPQ P +R ++PVFVHEDTYMRRQFT
Sbjct:   178 GTGIAMGQPQIP-ERVEDPVFVHEDTYMRRQFT 209

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2199332 AT1G68220 "AT1G68220" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 64/193 (33%), Positives = 86/193 (44%)

Query:     6 LALCSTVGLLGLLSAATGFGAEATRIKGSQV--QITSPTQCSYPRSPXXXXXXXXXXXXX 63
             +++ + V  L LL+    FGAE  R     V  Q    T C Y                 
Sbjct:     5 VSILTVVTALHLLAFVFAFGAERRRSTAVPVPDQYDEKTICKYGTEASTVYGMSAFGLLL 64

Query:    64 XXQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQHGE- 122
               Q  +N  T C+C  +G     S    A+V FVVSW +F+ A   LL G+A N  H + 
Sbjct:    65 VSQAVVNGVTKCLCFGKGLVTGTSYTVWAIVFFVVSWVSFLGAEACLLGGSARNAYHTKS 124

Query:   123 ESMYFGNYY-CYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNSGLWGNSSVPQEGGI 181
             E +Y G    C V+  GVFA GA  +L S+   ILYYL  HS  ++G W      Q  GI
Sbjct:   125 EGIYKGKELSCAVLPVGVFAAGAAFTLMSLIATILYYLA-HSKADTGGWEKH---QNDGI 180

Query:   182 AMGQ--PQFPPQR 192
              +G   P   P++
Sbjct:   181 NIGMTTPSDAPKQ 193

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:505006194 AT1G61065 "AT1G61065" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 43/126 (34%), Positives = 61/126 (48%)

Query:    44 CSYPRSPXXXXXXXXXXXXXXXQVTINVATGCICCRRGPHPSNS-NWTIALVCFVVSWFT 102
             C Y +                 Q+ I VA+ C+CC R   PS S +W I L  F+ +W  
Sbjct:    43 CVYDKDIATGLGVGSFLVLLASQLLIMVASRCLCCGRALTPSGSRSWAIFL--FITTWVF 100

Query:   103 FVIAFLLLLTGAALNDQHGEESMYFGNYY--CYVVKPGVFAGGAVLSLASVTLGILYYLT 160
             F IA + LL G+  N  H +  +YFGN    C  ++ GVF  GA   + +  +  LYY+T
Sbjct:   101 FFIAQVCLLAGSVRNAYHTKYRVYFGNTSPSCRSLRKGVFGAGAAFIVLTGIVSELYYVT 160

Query:   161 LHSAKN 166
             L  AK+
Sbjct:   161 LSRAKD 166

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006522 AT4G27435 "AT4G27435" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 47/173 (27%), Positives = 72/173 (41%)

Query:     1 MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSP--TQCSYPRSPXXXXXXXX 58
             M  K+++  + V +  L++      AE  R     VQ T      C Y            
Sbjct:     1 MASKIVS--AIVFVFNLIAFGLAVAAEQRRSTARVVQDTEVQYNYCVYDSDRATGYGVGA 58

Query:    59 XXXXXXXQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALND 118
                    Q+ I + + C CC +   P  S   +AL+ F+VSW  F+IA + LL G+  N 
Sbjct:    59 FLFSVASQILIMLVSRCFCCGKPLKPGGSR-ALALILFIVSWMFFLIAEICLLAGSVENA 117

Query:   119 QHGE-ESMYFGNYY-CYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNSGL 169
              H +  +M+  N   C  ++ GVFA GA     +  +   YY    SA  + L
Sbjct:   118 YHTKYRTMFMDNPPDCQTLRKGVFAAGASFVFFNAIVSQFYYFFYFSAAEASL 170

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2009922 AT1G13380 "AT1G13380" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 40/148 (27%), Positives = 66/148 (44%)

Query:    15 LGLLSAATGFGAEATRIKGSQVQ--ITSPTQCSYPRSPXXXXXXXXXXXXXXXQVTINVA 72
             L L++      AE  R  G  +Q  IT+ T C Y                   +  +   
Sbjct:    17 LSLVAFGFSIAAERRRSIGKSIQDPITNTTFCVYDSDVATGYGVGAFLFLLSSESLLMSV 76

Query:    73 TGCICCRRGPHP-SNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQHGEESMYFGNYY 131
             T C+C  R   P S+  W+I  + F+ SW TF++A   ++ GA  N  H  + +    + 
Sbjct:    77 TKCMCFGRPLAPGSDRAWSI--IYFISSWMTFLVAEACVIAGATKNAYH-TKYLSSQTFS 133

Query:   132 CYVVKPGVFAGGAVLSLASVTLGILYYL 159
             C  ++ G+F  GAV  +A++ L + YY+
Sbjct:   134 CASLRKGIFIAGAVFIVATMVLNVYYYM 161

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2011556 AT1G52910 "AT1G52910" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 44/160 (27%), Positives = 66/160 (41%)

Query:    12 VGLLGLLSAATGFGAEATRIKGSQVQITSPT--QCSYPRSPXXXXXXXXXXXXXXXQVTI 69
             V +L L++      AE  R  G  V         C Y                   QV I
Sbjct:    10 VFILDLIAVGLAIAAEQRRSVGKVVPDGEKEFEHCEYGSDIATSYGAGAFVLLFISQVII 69

Query:    70 NVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQHGE-ESMY-F 127
              VA+ C CC +   P  S     ++ F++ W  F+IA + LL G+  N  H     M+  
Sbjct:    70 MVASRCFCCGKALKPGGSR-ACGIMLFLICWVFFLIAEVCLLAGSIRNAYHTTYRRMWNI 128

Query:   128 GNY-YCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKN 166
              N   C V++ GVFA GA  +L +  +   YY++   A++
Sbjct:   129 ENPPSCEVIRKGVFAAGASFALFTAIVSQFYYISYSRARD 168

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090156 AT3G15480 "AT3G15480" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 43/162 (26%), Positives = 69/162 (42%)

Query:    12 VGLLGLLSAATGFGAEATRIKGSQVQITSPTQ---CSYPRSPXXXXXXXXXXXXXXXQVT 68
             V +L L++      AE  R  G +V+     Q   C Y                   QV 
Sbjct:    10 VFILDLIAVGLAIAAEQRRSVG-KVETDRDKQYDYCVYGTDIATSYGAGAFVLLFVSQVL 68

Query:    69 INVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQHGE-ESMYF 127
             I  A+ C CC +  +P  S    A++ F++ W  F+IA + LL  +  N  H +   M+ 
Sbjct:    69 IMAASRCFCCGKSLNPGGSR-ACAIILFLICWVFFLIAEMCLLAASIRNAYHTQYRKMWK 127

Query:   128 GNY--YCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNS 167
                   C V++ GVFA GA  +L +  +   YY+    A+++
Sbjct:   128 VEDPPSCEVIRKGVFAAGAAFTLFTAIVSQFYYVCYSRARDA 169

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2140391 AT4G19370 "AT4G19370" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 4.6e-05, P = 4.6e-05
 Identities = 42/156 (26%), Positives = 68/156 (43%)

Query:     6 LALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPXXXXXXXXXXXXXXX 65
             L L S V  LGL+S  T F AE  R +   ++  +   C  P S                
Sbjct:     4 LFLYSVVFSLGLVSFITCFAAEFKRTQKEDIRWDTERNCYVPGSHAFGLGSAAVLCFCLA 63

Query:    66 QVTINVAT---GCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALN--DQH 120
             Q+  N+          +R      ++ T+  V  ++SW  FV+  L+L T  +++    +
Sbjct:    64 QIVGNIVVFRNHRTRTKREDGYKITDLTLPTVLLLLSWSNFVVVVLILSTAISMSRAQAY 123

Query:   121 GEESMYFGNYYCYVVKPGVFAGG---AVLSLASVTL 153
             GE  +   +  CY+VK GVFA     A+L L ++T+
Sbjct:   124 GEGWL---DEDCYLVKDGVFAASGCLAILGLGALTI 156

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

TAIR|locus:2062561 AT2G32280 "AT2G32280" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 0.00034, P = 0.00034
 Identities = 32/163 (19%), Positives = 66/163 (40%)

Query:     6 LALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPXXXXXXXXXXXXXXX 65
             + +C  +  L + +A  G  AE  + +   +++    +C  P                  
Sbjct:     7 ILVCLVIVGLDVAAAILGIQAEVAQNQVKHMRLWL-FECREPSQDAFRLGLGAAAILVMA 65

Query:    66 QVTINVATGCIC-CRRGPHP-SNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQHGEE 123
              V +N+  GC+C C +     S+S   I++ C V++W  F + F  ++ G   N +    
Sbjct:    66 HVLLNLVGGCLCICSQDEFQRSSSTRQISMACLVLTWIVFAVGFGSIVIGTMSNSK-SRS 124

Query:   124 SMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKN 166
             S  F +++   +       G +L        + YY++  +AK+
Sbjct:   125 SCGFTHHHFLSI-------GGILCFLHALFCVAYYVSATAAKD 160


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.429    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      210       195   0.00078  111 3  11 22  0.42    32
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  179 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.54u 0.09s 16.63t   Elapsed:  00:00:00
  Total cpu time:  16.55u 0.09s 16.64t   Elapsed:  00:00:00
  Start:  Fri May 10 15:14:43 2013   End:  Fri May 10 15:14:43 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XIX0304 hypothetical protein (210 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
pfam06749	97	pfam06749, DUF1218, Protein of unknown function (D	4e-31

>gnl|CDD|219160 pfam06749, DUF1218, Protein of unknown function (DUF1218)

 Score =  108 bits (273), Expect = 4e-31
 Identities = 48/97 (49%), Positives = 60/97 (61%), Gaps = 2/97 (2%)

Query: 58  AALSLLIAQVTINVATGCICCRRGPHPSNS-NWTIALVCFVVSWFTFVIAFLLLLTGAAL 116
           AA+ L +AQV  NV  GC CC +   P +     +A+VCFV+SW  FVIAF LLL GAA 
Sbjct: 2   AAVFLAVAQVVGNVVGGCCCCGKALPPKSGRKRALAVVCFVLSWIAFVIAFALLLAGAAR 61

Query: 117 NDQHGEESMYFGNYYCYVVKPGVFAGGAVLSLASVTL 153
           N  H   +++F    CY +K GVFA GAVLSL +  L
Sbjct: 62  NAYHTRYNVHF-RPSCYTLKKGVFAAGAVLSLLAALL 97

This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues. Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
PF06749	97	DUF1218: Protein of unknown function (DUF1218); In	99.96
PF05478	806	Prominin: Prominin; InterPro: IPR008795 The promin	88.0
PF07344	155	Amastin: Amastin surface glycoprotein; InterPro: I	86.63
cd07912	418	Tweety_N N-terminal domain of the protein encoded	83.1
PF05360	53	YiaAB: yiaA/B two helix domain; InterPro: IPR00802	82.27
PF04906	406	Tweety: Tweety; InterPro: IPR006990 None of the me	81.88
PF09788	256	Tmemb_55A: Transmembrane protein 55A; InterPro: IP	80.11

>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function

Probab=99.96  E-value=5e-30  Score=195.25  Aligned_cols=96  Identities=52%  Similarity=0.873  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHHhccccccCCCCC-CCcchHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Q 028344           57 TAALSLLIAQVTINVATGCICCRRGPHP-SNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQHGEESMYFGNYYCYVV  135 (210)
Q Consensus        57 ~A~v~Ll~aqv~~~~~~gC~Cc~~~~~p-~~~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~C~~~  135 (210)
                      +|++||+++|+++|+++||+||+++..| ++.+|+++++||++||++|+||+++|++|+++|++|++++.|.+ ++|+++
T Consensus         1 ~A~~~L~~aqvi~~~~~gC~cc~~~~~~~~~~~r~~a~~~~v~SWi~f~ia~~~ll~ga~~n~~~~~~~~~~~-~~C~~~   79 (97)
T PF06749_consen    1 AAAVFLLAAQVIANVAGGCLCCGKRVSPKSSRNRTLAVVFFVLSWIVFIIAEALLLAGASMNARHTKGNGWFN-PSCYTV   79 (97)
T ss_pred             CHHHHHHHHHHHHHHHhcceEeCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhccccccccccccC-Cccccc
Confidence            4899999999999999999999777666 56799999999999999999999999999999999999988885 589999


Q ss_pred             cCceehhhHHHHHHHHHH
Q 028344          136 KPGVFAGGAVLSLASVTL  153 (210)
Q Consensus       136 k~GvFa~aavl~l~t~~~  153 (210)
                      |+|+|++||+|+|+|++|
T Consensus        80 k~GvF~~~a~l~l~t~~f   97 (97)
T PF06749_consen   80 KKGVFAGGAVLSLVTALF   97 (97)
T ss_pred             CCceeeHhHHHHHHHHhC
Confidence            999999999999999875

Family members contain a number of conserved cysteine residues.

>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology

Probab=88.00  E-value=1.6  Score=44.47  Aligned_cols=71  Identities=24%  Similarity=0.497  Sum_probs=43.0

Q ss_pred             eecCCCchh-hhHHHHHHHHHHHHHHHHHHhcccccc-CC-CCCCC-------cchH--HH-HHHHHHHHHHHHHHHHHH
Q 028344           44 CSYPRSPAL-GLGLTAALSLLIAQVTINVATGCICCR-RG-PHPSN-------SNWT--IA-LVCFVVSWFTFVIAFLLL  110 (210)
Q Consensus        44 C~Yps~~A~-~lGv~A~v~Ll~aqv~~~~~~gC~Cc~-~~-~~p~~-------~~r~--~a-i~~~v~SWi~f~iA~~lL  110 (210)
                      -+|..+.-. +++++..++|++.=.+  ...-|+||+ ++ ..|+.       +.+.  .+ ++.|++||+..+++.+.|
T Consensus       407 ~~y~~yR~~~~lil~~~llLIv~~~~--lGLl~G~~G~~~~~~p~~r~c~~~tGg~~Lm~gv~~~Flf~~~l~l~~~~~F  484 (806)
T PF05478_consen  407 EKYDSYRWIVGLILCCVLLLIVLCLL--LGLLCGCCGYRRRADPTDRGCSSNTGGNFLMAGVGLSFLFSWFLMLLVLFYF  484 (806)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455554433 4566666655553332  334466786 32 33321       1222  23 667999999999999999


Q ss_pred             Hhhhhc
Q 028344          111 LTGAAL  116 (210)
Q Consensus       111 l~Ga~~  116 (210)
                      +.|...
T Consensus       485 l~G~~~  490 (806)
T PF05478_consen  485 LVGGNT  490 (806)
T ss_pred             HHHhhh
Confidence            999976

Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane

>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long)

Probab=86.63  E-value=6.1  Score=32.12  Aligned_cols=90  Identities=16%  Similarity=0.125  Sum_probs=57.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCceeecCCCchhhhHHHHHHHHHHHHHHHHHHhccccccCCCCCC
Q 028344            6 LALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAALSLLIAQVTINVATGCICCRRGPHPS   85 (210)
Q Consensus         6 ~~v~~vv~~lgliAfiLgi~AE~~r~~~~~v~~~~~~~C~Yps~~A~~lGv~A~v~Ll~aqv~~~~~~gC~Cc~~~~~p~   85 (210)
                      -..+++.++++..|+++|+..=...+.              -+-....|.+.+++++++.=++....=.=.-|+ ...+.
T Consensus        66 ~afaIisi~~~~~a~v~g~~~l~~~~~--------------~r~v~l~L~~~~~~~~~v~wa~~v~~Y~~~~C~-~~~~~  130 (155)
T PF07344_consen   66 QAFAIISIFVYGAAFVLGVLLLCCCSC--------------LRWVCLVLNIVGIVTLLVVWALMVVVYYGGFCG-ALKSR  130 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc-CccCC
Confidence            345677779999999999986554321              123456788888888777665543322112243 22222


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHH
Q 028344           86 NSNWTIALVCFVVSWFTFVIAFLLL  110 (210)
Q Consensus        86 ~~~r~~ai~~~v~SWi~f~iA~~lL  110 (210)
                      ..+-..+-.+++.+|+..+++.+.|
T Consensus       131 ~~~yg~GF~L~v~aw~l~~i~ii~L  155 (155)
T PF07344_consen  131 GYKYGAGFALFVAAWCLDIINIIFL  155 (155)
T ss_pred             CcccCccHHHHHHHHHHHHHHHHhC
Confidence            2234467899999999999988754

In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.

>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels

Probab=83.10  E-value=5.5  Score=37.92  Aligned_cols=29  Identities=21%  Similarity=0.307  Sum_probs=18.6

Q ss_pred             hhhh-HHHHHHHHHHHHHHHHHHhcccccc
Q 028344           51 ALGL-GLTAALSLLIAQVTINVATGCICCR   79 (210)
Q Consensus        51 A~~l-Gv~A~v~Ll~aqv~~~~~~gC~Cc~   79 (210)
                      ++++ |..|++.|++.-+...+...|.||.
T Consensus        38 Sv~~~a~iaavwlil~ll~ll~~~~~~CCc   67 (418)
T cd07912          38 SLLILASIPAACLILSLLFLLVYLITRCCD   67 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            5553 6667776666666666666677653

The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.

>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section

Probab=82.27  E-value=1.8  Score=29.43  Aligned_cols=43  Identities=30%  Similarity=0.476  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccccccccccccccccccccCceehhhHHHHHHHH
Q 028344           96 FVVSWFTFVIAFLLLLTGAALNDQHGEESMYFGNYYCYVVKPGVFAGGAVLSLASV  151 (210)
Q Consensus        96 ~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~C~~~k~GvFa~aavl~l~t~  151 (210)
                      ...+|+.|+++..+++.|.. |....            .--||.++.+-.+++.++
T Consensus         2 ~~~~~~~f~i~~~~~~iGl~-~~~~~------------l~~KGy~~~~~l~~l~s~   44 (53)
T PF05360_consen    2 VGQSWISFGISIVLMLIGLW-NAPLD------------LSEKGYYAMGLLFLLFSA   44 (53)
T ss_pred             hhHHHHHHHHHHHHHHHHHH-hCCCC------------HHHHHHHHHHHHHHHHHH
Confidence            46799999999999999987 55432            233577777766666553

>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised

Probab=81.88  E-value=2.5  Score=39.81  Aligned_cols=29  Identities=31%  Similarity=0.540  Sum_probs=19.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhccccccCCC
Q 028344           54 LGLTAALSLLIAQVTINVATGCICCRRGP   82 (210)
Q Consensus        54 lGv~A~v~Ll~aqv~~~~~~gC~Cc~~~~   82 (210)
                      +|..+++.|++.-+...+..-|.||+++.
T Consensus        22 la~v~~~~l~l~Ll~ll~yl~~~CC~r~~   50 (406)
T PF04906_consen   22 LASVAAACLALSLLFLLIYLICRCCCRRP   50 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            46666777777776666666777775543

However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].

>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate

Probab=80.11  E-value=4.3  Score=36.26  Aligned_cols=66  Identities=18%  Similarity=0.264  Sum_probs=41.1

Q ss_pred             HhccccccCCC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccccCceehhhHHHHHHH
Q 028344           72 ATGCICCRRGP-HPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQHGEESMYFGNYYCYVVKPGVFAGGAVLSLAS  150 (210)
Q Consensus        72 ~~gC~Cc~~~~-~p~~~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~C~~~k~GvFa~aavl~l~t  150 (210)
                      ..+|+-|++.+ +-+.-.|.-+++||+++-+++++|..+. +|+...+.+               +.|++..-..+.|++
T Consensus       177 lARCPHCrKvSSVG~~faRkR~i~f~llgllfliiaiglt-vGT~~~A~~---------------~~giY~~wv~~~l~a  240 (256)
T PF09788_consen  177 LARCPHCRKVSSVGPRFARKRAIIFFLLGLLFLIIAIGLT-VGTWTYAKT---------------YGGIYVSWVGLFLIA  240 (256)
T ss_pred             cccCCCCceeccccchHhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHhh---------------cCcEeHHHHHHHHHH
Confidence            36898887543 2222368889999999998887776654 565533322               235666666665555


Q ss_pred             HHH
Q 028344          151 VTL  153 (210)
Q Consensus       151 ~~~  153 (210)
                      .++
T Consensus       241 ~~~  243 (256)
T PF09788_consen  241 LIC  243 (256)
T ss_pred             HHH
Confidence            444

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00