Citrus Sinensis ID: 028350

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MSESRSQSQNMASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGICIFFSIQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEccccccEEEEcccccccccccccccEEEEEEEccccccccEEEEEEccccccccccccccHHHHHHHHHcccccccccccccEEEEEEccccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHEcHHHHHcccccccccccccccccccccccEEEEEccccccHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHcHHHccHHHHHccccEEEEcccccEEEEEccccEEEcccccccEEEEEEcccccccccEEEEEEccccccccccccccHHHHHHHHHcccccccccccccEEEEEEccccccEEEEEEEc
Coil and Loop (DISEMBL)
msesrsqsqnmasisplhtwsqrphhasftafsnnkgtnqyKKQFVFCCKKQEQEDDARTLNRFrieeqdddsrTKRREVMFQLAFTACSFPAIVSYALAANEDLRVYTDELNKFeisipqdwqlgagepngfksitafypqeassssVSVVITGlgpdftrmesfgKVEAFADTLVSGldrswrrppgvaaklidckaskgiciffsiq
Flexible Loop (DISEMBL)
msesrsqsqNMASisplhtwsqrPHHASFTAFSNNKGTNQYKKQFVFCCKKQeqeddartlnrfrieeqdddsrtkRREVMFQLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYpqeassssVSVVITGLGPDFTRMESFGKVEAFADTLVSgldrswrrppgvaaklidckaskgICIFFSIQ
Low Complexity Region (SEG)
MSESRSQSQNMASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGICIFFSIQ
Disordered region (IsUnstruct)
*************************************TNQYKKQFVFCCK****************************EVMFQLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQE****SVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGICIFFS**
Disordered Region (DISOPRED)
**************SPLHTWSQRPHHA*******************FCC******************************VMFQLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAG*PNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLD*******GVAAKLIDCKASKGICIFFSIQ
Disordered Region (DISEMBL)
*************ISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGICIFFSIQ
Disordered Region (DISPRO)
***********ASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGICIFFSIQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSESRSQSQNMASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGICIFFSIQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
Q9S720	247	PsbP domain-containing pr	yes	no	0.690	0.587	0.657	1e-49

>sp|Q9S720|PPD3_ARATH PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana GN=PPD3 PE=1 SV=2

 Score =  196 bits (497), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/149 (65%), Positives = 114/149 (76%), Gaps = 4/149 (2%)

Query: 57  DARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALA---ANEDLRVYTDELN 113
           D+    + RI  +D     KRR+VM Q+A +    P  +S A A   A+E  RVYTDE N
Sbjct: 38  DSSNEEQHRISSRDHVG-MKRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETN 96

Query: 114 KFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFA 173
           KFEISIPQDWQ+G  EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA
Sbjct: 97  KFEISIPQDWQVGQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFA 156

Query: 174 DTLVSGLDRSWRRPPGVAAKLIDCKASKG 202
           +TLVSGLDRSW++P GV AKLID +ASKG
Sbjct: 157 ETLVSGLDRSWQKPVGVTAKLIDSRASKG 185

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
255539324	264	conserved hypothetical protein [Ricinus	0.861	0.685	0.598	3e-55
224083366	193	predicted protein [Populus trichocarpa]	0.647	0.704	0.721	3e-52
147809819	247	hypothetical protein VITISV_030793 [Viti	0.895	0.761	0.538	3e-51
225457650	253	PREDICTED: psbP domain-containing protei	0.895	0.743	0.538	3e-51
449458059	257	PREDICTED: psbP domain-containing protei	0.623	0.509	0.711	2e-50
449522159	188	PREDICTED: psbP domain-containing protei	0.585	0.654	0.732	1e-48
188509930	274	unknown predicted protein [Gossypioides	0.671	0.514	0.660	3e-48
21537211	247	thylakoid lumen protein, chloroplast pre	0.690	0.587	0.657	7e-48
18411110	247	PsbP domain-containing protein 3 [Arabid	0.690	0.587	0.657	7e-48
297839519	225	hypothetical protein ARALYDRAFT_476802 [	0.690	0.644	0.653	3e-46

>gi|255539324|ref|XP_002510727.1| conserved hypothetical protein [Ricinus communis] gi|223551428|gb|EEF52914.1| conserved hypothetical protein [Ricinus communis]

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 143/192 (74%), Gaps = 11/192 (5%)

Query: 15  SPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDAR--TLNRFRIEEQDDD 72
           +PLH    +P+  +F + S +   N  +KQ + CC     ++D       RFR++E    
Sbjct: 20  TPLHLL--KPN-LNFLSASPSFRFNSCRKQHLPCCTNSFPDEDQHQPLFCRFRLQEP--- 73

Query: 73  SRTKRREVMFQLAFT-ACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPN 131
               RRE +F +AFT   +FP ++S A A  +D R+YTD+ NKF+ISIPQDW++GAGEPN
Sbjct: 74  --YGRREALFSVAFTTGFTFPGLISNAFAEIDDFRLYTDDANKFQISIPQDWRVGAGEPN 131

Query: 132 GFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVA 191
           GFKS+TAFYP+EAS SSVSVVITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW+RPPGVA
Sbjct: 132 GFKSVTAFYPEEASGSSVSVVITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQRPPGVA 191

Query: 192 AKLIDCKASKGI 203
           AKLIDCKA+KGI
Sbjct: 192 AKLIDCKATKGI 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083366|ref|XP_002306998.1| predicted protein [Populus trichocarpa] gi|222856447|gb|EEE93994.1| predicted protein [Populus trichocarpa]

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 101/140 (72%), Positives = 121/140 (86%), Gaps = 4/140 (2%)

Query: 75  TKRREVMFQLAFTACSFPAIVSYALAAN---EDLRVYTDELNKFEISIPQDWQLGAGEPN 131
           TKRRE +F + FTA +FPAI S ALAA    ED RVYTD+ NKF+ISIPQ WQ+GAGEP+
Sbjct: 2   TKRREALFNMVFTAFTFPAIASTALAATGVAEDSRVYTDDANKFKISIPQGWQVGAGEPS 61

Query: 132 GFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVA 191
           G+KS+TAFYP+EAS+SSVSVVITGLGPDFTR+ESFGKV+AFA+TLV GLDRSW+RPPGVA
Sbjct: 62  GYKSVTAFYPEEASNSSVSVVITGLGPDFTRLESFGKVDAFAETLVGGLDRSWQRPPGVA 121

Query: 192 AKLIDCKASKGI-CIFFSIQ 210
           AKLID KA+ G+  I +++Q
Sbjct: 122 AKLIDSKAANGLYYIEYTLQ 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147809819|emb|CAN64877.1| hypothetical protein VITISV_030793 [Vitis vinifera]

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 112/208 (53%), Positives = 144/208 (69%), Gaps = 20/208 (9%)

Query: 11  MASISPLHTWSQRPHHASFTAFSNNKGTNQY-----KKQFVFCCKKQEQEDDARTLNRFR 65
           MA   PL     R     F+A+S+ KG         KKQ V  CK + +E++  +   F 
Sbjct: 1   MALYFPLPL---RSGSCDFSAYSSKKGCGSRTGKCGKKQRVVFCKNENKEEEKTS---FG 54

Query: 66  IEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALA---ANEDLRVYTDELNKFEISIPQD 122
           I+EQ    R   REV+ Q+ F+  S  AIV  ALA     ED +VY+DE+NKF+I IPQD
Sbjct: 55  IKEQHGGGR---REVVLQIVFSTISLQAIVPNALADTEVPEDFKVYSDEVNKFKIQIPQD 111

Query: 123 WQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDR 182
           WQ+G+GEP+GFKS+TAFYP+EAS S+VSVVITGLG DFTR+ESFGKV+AFA+ LV+GLDR
Sbjct: 112 WQVGSGEPSGFKSVTAFYPEEASGSNVSVVITGLGADFTRLESFGKVDAFAENLVNGLDR 171

Query: 183 SWRRPPGVAAKLIDCKASKGICIFFSIQ 210
           SW+RPPG+AAKLIDC+A+ G   F+ I+
Sbjct: 172 SWQRPPGIAAKLIDCRAANG---FYYIE 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457650|ref|XP_002273332.1| PREDICTED: psbP domain-containing protein 3, chloroplastic [Vitis vinifera] gi|297745601|emb|CBI40766.3| unnamed protein product [Vitis vinifera]

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 112/208 (53%), Positives = 144/208 (69%), Gaps = 20/208 (9%)

Query: 11  MASISPLHTWSQRPHHASFTAFSNNKGTNQY-----KKQFVFCCKKQEQEDDARTLNRFR 65
           MA   PL     R     F+A+S+ KG         KKQ V  CK + +E++  +   F 
Sbjct: 1   MALYFPLPL---RSGSCDFSAYSSKKGYGSRTGKCGKKQRVVFCKNENKEEEKTS---FG 54

Query: 66  IEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALA---ANEDLRVYTDELNKFEISIPQD 122
           I+EQ    R   REV+ Q+ F+  S  AIV  ALA     ED +VY+DE+NKF+I IPQD
Sbjct: 55  IKEQHGGGR---REVVLQMVFSTISLQAIVPNALADTEVPEDFKVYSDEVNKFKIQIPQD 111

Query: 123 WQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDR 182
           WQ+G+GEP+GFKS+TAFYP+EAS S+VSVVITGLG DFTR+ESFGKV+AFA+ LV+GLDR
Sbjct: 112 WQVGSGEPSGFKSVTAFYPEEASGSNVSVVITGLGADFTRLESFGKVDAFAENLVNGLDR 171

Query: 183 SWRRPPGVAAKLIDCKASKGICIFFSIQ 210
           SW+RPPG+AAKLIDC+A+ G   F+ I+
Sbjct: 172 SWQRPPGIAAKLIDCRAANG---FYYIE 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458059|ref|XP_004146765.1| PREDICTED: psbP domain-containing protein 3, chloroplastic-like [Cucumis sativus]

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 96/135 (71%), Positives = 111/135 (82%), Gaps = 4/135 (2%)

Query: 73  SRTKRREVMFQLAFTACSFPAIVSYALAAN----EDLRVYTDELNKFEISIPQDWQLGAG 128
           S   RRE+M  + FTA SF  + S ALA +    ED R YTDE NKF + IPQDWQ+G G
Sbjct: 62  SGVNRREIMLGIGFTAFSFQEVGSNALAESVVVAEDYRTYTDEANKFSLVIPQDWQVGNG 121

Query: 129 EPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPP 188
           EPNGFKS+TAF+PQE S+S+VSVVI+GLGPD+TRMESFGKVE FADTLVSGLDRSW+RPP
Sbjct: 122 EPNGFKSVTAFFPQETSTSNVSVVISGLGPDYTRMESFGKVEEFADTLVSGLDRSWKRPP 181

Query: 189 GVAAKLIDCKASKGI 203
           GVAAKLIDC++SKGI
Sbjct: 182 GVAAKLIDCRSSKGI 196

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522159|ref|XP_004168095.1| PREDICTED: psbP domain-containing protein 3, chloroplastic-like [Cucumis sativus]

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/127 (73%), Positives = 107/127 (84%), Gaps = 4/127 (3%)

Query: 81  MFQLAFTACSFPAIVSYALAAN----EDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSI 136
           M  + FTA SF  +VS ALA +    ED R YTDE NKF + IPQDWQ+G GEPNGFKS+
Sbjct: 1   MLGIGFTAFSFQEVVSNALAESVVVAEDYRTYTDEANKFSLVIPQDWQVGNGEPNGFKSV 60

Query: 137 TAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID 196
           TAF+PQE S+S+VSVVI+GLGPD+TRMESFGKVE FADTLVSGLDRSW+RPPGVAAKLID
Sbjct: 61  TAFFPQETSTSNVSVVISGLGPDYTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLID 120

Query: 197 CKASKGI 203
           C++SKGI
Sbjct: 121 CRSSKGI 127

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|188509930|gb|ACD56619.1| unknown predicted protein [Gossypioides kirkii]

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 101/153 (66%), Positives = 119/153 (77%), Gaps = 12/153 (7%)

Query: 67  EEQDDDSR---TKRREVMFQLAFTACSFP-AIVSYALAANE-----DLRVYTDELNKFEI 117
           E ++DD     T+RR+ + Q    A SFP  I+S A+A  E     D RVYTDE NKF+I
Sbjct: 46  EMKEDDGHATSTRRRQFILQAPLIAFSFPQLIMSTAIAVAEIDVPQDFRVYTDEQNKFKI 105

Query: 118 SIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLV 177
            IPQDWQ+GAGEPN FKSITAFYP+E ++S+VSV ITGLGPDFTRMESFGKV+AFADTLV
Sbjct: 106 FIPQDWQVGAGEPNNFKSITAFYPEEEANSNVSVAITGLGPDFTRMESFGKVDAFADTLV 165

Query: 178 SGLDRSWRRPPGVAAKLIDCKASKGICIFFSIQ 210
           SGLDRSW+RPPGVAAKLIDCKA+ G   F+ I+
Sbjct: 166 SGLDRSWQRPPGVAAKLIDCKAANG---FYYIE 195

Source: Gossypioides kirkii

Species: Gossypioides kirkii

Genus: Gossypioides

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537211|gb|AAM61552.1| thylakoid lumen protein, chloroplast precursor [Arabidopsis thaliana]

 Score =  196 bits (497), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 98/149 (65%), Positives = 114/149 (76%), Gaps = 4/149 (2%)

Query: 57  DARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALA---ANEDLRVYTDELN 113
           D+    + RI  +D     KRR+VM Q+A +    P  +S A A   A+E  RVYTDE N
Sbjct: 38  DSSNEEQHRISSRDHVG-MKRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETN 96

Query: 114 KFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFA 173
           KFEISIPQDWQ+G  EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA
Sbjct: 97  KFEISIPQDWQVGQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFA 156

Query: 174 DTLVSGLDRSWRRPPGVAAKLIDCKASKG 202
           +TLVSGLDRSW++P GV AKLID +ASKG
Sbjct: 157 ETLVSGLDRSWQKPVGVTAKLIDSRASKG 185

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411110|ref|NP_565131.1| PsbP domain-containing protein 3 [Arabidopsis thaliana] gi|18203439|sp|Q9S720.2|PPD3_ARATH RecName: Full=PsbP domain-containing protein 3, chloroplastic; AltName: Full=OEC23-like protein 2; Flags: Precursor gi|32815945|gb|AAP88357.1| At1g76450 [Arabidopsis thaliana] gi|110742837|dbj|BAE99317.1| hypothetical protein [Arabidopsis thaliana] gi|332197723|gb|AEE35844.1| PsbP domain-containing protein 3 [Arabidopsis thaliana]

 Score =  196 bits (497), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 98/149 (65%), Positives = 114/149 (76%), Gaps = 4/149 (2%)

Query: 57  DARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALA---ANEDLRVYTDELN 113
           D+    + RI  +D     KRR+VM Q+A +    P  +S A A   A+E  RVYTDE N
Sbjct: 38  DSSNEEQHRISSRDHVG-MKRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETN 96

Query: 114 KFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFA 173
           KFEISIPQDWQ+G  EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA
Sbjct: 97  KFEISIPQDWQVGQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFA 156

Query: 174 DTLVSGLDRSWRRPPGVAAKLIDCKASKG 202
           +TLVSGLDRSW++P GV AKLID +ASKG
Sbjct: 157 ETLVSGLDRSWQKPVGVTAKLIDSRASKG 185

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839519|ref|XP_002887641.1| hypothetical protein ARALYDRAFT_476802 [Arabidopsis lyrata subsp. lyrata] gi|297333482|gb|EFH63900.1| hypothetical protein ARALYDRAFT_476802 [Arabidopsis lyrata subsp. lyrata]

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 98/150 (65%), Positives = 113/150 (75%), Gaps = 5/150 (3%)

Query: 57  DARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALA---ANEDLRVYTDELN 113
           D+    + RI  +D     KRRE M Q+A +    P  VS A A   A+E  RVYTDE N
Sbjct: 15  DSSNEEQHRISSRDHVG-IKRREAMLQIASSVFFLPLAVSPAFAETNASEAFRVYTDEAN 73

Query: 114 KFEISIPQ-DWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAF 172
           KFEISIPQ DWQ+G  EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAF
Sbjct: 74  KFEISIPQEDWQVGQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAF 133

Query: 173 ADTLVSGLDRSWRRPPGVAAKLIDCKASKG 202
           A+TLVSGLDRSW++P GV AKLID ++SKG
Sbjct: 134 AETLVSGLDRSWQKPAGVTAKLIDSRSSKG 163

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:2011711	247	AT1G76450 [Arabidopsis thalian	0.904	0.769	0.544	4.8e-46

TAIR|locus:2011711 AT1G76450 [Arabidopsis thaliana (taxid:3702)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 111/204 (54%), Positives = 135/204 (66%)

Query:    11 MASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEEQD 70
             MA+ISP   W   P      +FSN + T    ++           D +    + RI  +D
Sbjct:     1 MAAISP---WLSSPQ-----SFSNPRVTITDSRRCSSISAAISVLDSSNE-EQHRISSRD 51

Query:    71 DDSRTKRREVMFQLAFTACSFPAIVSYALA---ANEDLRVYTDELNKFEISIPQDWQLGA 127
                  KRR+VM Q+A +    P  +S A A   A+E  RVYTDE NKFEISIPQDWQ+G 
Sbjct:    52 HVGM-KRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQVGQ 110

Query:   128 GEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRP 187
              EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW++P
Sbjct:   111 AEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKP 170

Query:   188 PGVAAKLIDCKASKGIC-IFFSIQ 210
              GV AKLID +ASKG   I +++Q
Sbjct:   171 VGVTAKLIDSRASKGFYYIEYTLQ 194


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.130   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      210       210   0.00080  112 3  11 22  0.49    32
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  179 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.04u 0.10s 21.14t   Elapsed:  00:00:01
  Total cpu time:  21.04u 0.10s 21.14t   Elapsed:  00:00:01
  Start:  Fri May 10 15:36:01 2013   End:  Fri May 10 15:36:02 2013

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015979 "photosynthesis" evidence=IEA;RCA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.V.2242.1	hypothetical protein (193 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_LG_VI000277	SubName- Full=Putative uncharacterized protein; (257 aa)				•			•		0.491
	grail3.0013033101	hypothetical protein (295 aa)				•			•		0.452

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	99.97
PLN00059	286	PsbP domain-containing protein 1; Provisional	99.88
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	99.87
PLN00067	263	PsbP domain-containing protein 6; Provisional	99.76
PLN00066	262	PsbP domain-containing protein 4; Provisional	99.7
PLN03152	241	hypothetical protein; Provisional	98.98
PF12712	153	DUF3805: Domain of unknown function (DUF3805); Int	81.82

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=99.97  E-value=1.7e-30  Score=230.09  Aligned_cols=147  Identities=22%  Similarity=0.352  Sum_probs=114.5

Q ss_pred             ccceeeeeeeccccchhhhhhhhccccccccccchhhHHHHHHHHHHHhh----ccccchhhhhhh--------ccCcee
Q 028350           40 QYKKQFVFCCKKQEQEDDARTLNRFRIEEQDDDSRTKRREVMFQLAFTAC----SFPAIVSYALAA--------NEDLRV  107 (210)
Q Consensus        40 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~e~~~~~~~~RR~aL~~~a~aa~----~~pa~a~~a~AA--------~~gF~~  107 (210)
                      ..+.+. +.|++|.++.+                .++||.+|++++++++    +.|+.++++++|        ++||.+
T Consensus        32 ~~~~~~-~~~~~~~~~~~----------------~~srr~~l~~~~ga~a~~~~~~pa~aay~~~anvfg~~k~~~gF~~   94 (260)
T PLN00042         32 ASRPSQ-VVCRAQEEDNS----------------AVSRRAALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLP   94 (260)
T ss_pred             CCCCcc-eeeeccccccc----------------cccHHHHHHHHHHHHHhhcccCchhhhhcchhhccCCCCCCCCCeE
Confidence            334444 45599887554                2899999998888743    367778888886        599999


Q ss_pred             eeeCCCceEEEcCCCCcCCCC-CCCCcceeEEecCCCCCCcceEEEEecCCCCcccccccCCHHHHHHHH----hhcc--
Q 028350          108 YTDELNKFEISIPQDWQLGAG-EPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTL----VSGL--  180 (210)
Q Consensus       108 Y~D~~dGFsf~yPs~W~~~~g-e~sG~K~V~af~p~~~~~sNVsViiTpi~tDftsI~sFGspeefae~L----V~~v--  180 (210)
                      |+  +|||+|+||++|+++++ +++|  ++++|+|+.++++||+|+|+|  +|+++|++||+||||+++|    .+.+  
T Consensus        95 y~--~dgY~FlyP~~W~~~ke~~~~G--~dv~f~D~~~~~eNVSV~Isp--t~k~sI~dlGsPee~l~~vgylL~kq~~a  168 (260)
T PLN00042         95 YN--GDGFKLLVPSKWNPSKEREFPG--QVLRFEDNFDATSNLSVMVTP--TDKKSITDYGSPEEFLSKVSYLLGKQAYS  168 (260)
T ss_pred             ee--CCCeEEecCCCCccccccccCC--ceEEeeccccccccEEEEEec--CCcCCHhhcCCHHHHHHHHHHHHHhhhcc
Confidence            98  69999999999999976 5688  899999999999999999988  6889999999999976664    3322  


Q ss_pred             --cCCC-CCCCCC--ceEEEeceec--CC-cEEEEee
Q 028350          181 --DRSW-RRPPGV--AAKLIDCKAS--KG-ICIFFSI  209 (210)
Q Consensus       181 --drs~-~rpP~q--~akLiDa~~r--~g-~YY~~~~  209 (210)
                        +++. -+.|++  .++|||++++  +| .||+|.+
T Consensus       169 ~~t~s~~Gf~p~~vata~Lleas~re~dGk~YY~lE~  205 (260)
T PLN00042        169 GETASEGGFDANAVATAAVLESSTQEVGGKPYYYLSV  205 (260)
T ss_pred             CccccccCcCcccccceeEEEeeeEEeCCeEEEEEEE
Confidence              1110 113665  5789999998  45 6999765

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=99.88  E-value=1.2e-22  Score=181.58  Aligned_cols=127  Identities=19%  Similarity=0.271  Sum_probs=103.0

Q ss_pred             hhhHHHHHH--HHHHHhhccccchhhhhhhccCceeeeeCCCceEEEcCCCCcCCCCCCCCcceeEEecCCCCCCcceEE
Q 028350           74 RTKRREVMF--QLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSV  151 (210)
Q Consensus        74 ~~~RR~aL~--~~a~aa~~~pa~a~~a~AA~~gF~~Y~D~~dGFsf~yPs~W~~~~ge~sG~K~V~af~p~~~~~sNVsV  151 (210)
                      .+.||++|+  ++++.+..+-+..+.|+|++.+|++|.|..|||+|+||.+|....+  .|  +-+.|-|....+.||+|
T Consensus        76 ~~~rr~~~~~~l~~~~~~~s~~~~~~a~a~~~~l~~y~D~~DGY~FlYP~GWi~V~~--~G--~DVvFrD~Ie~~ENVSV  151 (286)
T PLN00059         76 AVGRRKSMMMGLLMSGLIVSEANLPTAFASIPVFREYIDTFDGYSFKYPQNWIQVRG--AG--ADIFFRDPVVLDENLSV  151 (286)
T ss_pred             hhhhhhhhHHHHHHHHHHHHhhcCchhhcCCcccceeEcCCCCeEEeCCCCCeEecc--CC--CceEEeccCccccceEE
Confidence            389999965  3333344444556678888999999999999999999999998875  35  45568888899999999


Q ss_pred             EEecCCC-CcccccccCCHHHHHHHHhhcccCCCCCCC-------CCceEEEeceec---CC-cEEEEe
Q 028350          152 VITGLGP-DFTRMESFGKVEAFADTLVSGLDRSWRRPP-------GVAAKLIDCKAS---KG-ICIFFS  208 (210)
Q Consensus       152 iiTpi~t-DftsI~sFGspeefae~LV~~vdrs~~rpP-------~q~akLiDa~~r---~g-~YY~~~  208 (210)
                      +|++++. ++++|++||+|+|||+.|++.+    ..||       ++.++||+|.+|   +| .||+|-
T Consensus       152 ~ISs~sss~~~sLeDLGsP~eVgerLlkqv----La~f~str~GsgReaeLVsA~~Re~~DGktYY~lE  216 (286)
T PLN00059        152 EFSSPSSSKYTSLEDLGSPEEVGKRVLRQY----LTEFMSTRLGVKREANILSTSSRVADDGKLYYQVE  216 (286)
T ss_pred             EEecCCcccCCChHHcCCHHHHHHHHHHHH----hcccccccCCCCcceEEEEeeeEEccCCcEEEEEE
Confidence            9998753 5889999999999999999988    4432       589999999987   45 599943

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=99.87  E-value=4.1e-22  Score=163.39  Aligned_cols=104  Identities=25%  Similarity=0.358  Sum_probs=85.1

Q ss_pred             hhhhccCceeeeeCCCceEEEcCCCCcCCCCCCCCcceeEEecCCCCCCcceEEEEecCCCCcccccccCCHHHHHHHHh
Q 028350           98 ALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLV  177 (210)
Q Consensus        98 a~AA~~gF~~Y~D~~dGFsf~yPs~W~~~~ge~sG~K~V~af~p~~~~~sNVsViiTpi~tDftsI~sFGspeefae~LV  177 (210)
                      ++...++|++|.|+++||+|.||++|++...  +|  .++.|.|+.+...||+|+|+|++.++ +|++||+|++|++.|+
T Consensus        16 ~~~~~~~~~~y~d~~~~y~f~~P~gW~~~~~--~G--~~v~f~d~~~~~~nvsV~v~p~~~~~-sl~~lGs~~~va~~l~   90 (175)
T PF01789_consen   16 AAEASTGFQPYTDSDDGYSFLYPSGWEEVDV--SG--ADVVFRDPIDADENVSVVVSPVPKDF-SLEDLGSPEEVAERLL   90 (175)
T ss_dssp             STT--SSEEEEEECTTTEEEEEETTEEEEES--TT--EEEEEEETTETTSEEEEEEEE-STS--SGGGG-SHHHHHHHHH
T ss_pred             cccCCCCceEEEcCCCCEEEECCCCCeecCC--CC--eEEEEECcccccceEEEEEEecCCcC-chhhcCCHHHHHHHHh
Confidence            3455899999999999999999999976655  67  78889999999999999999998888 9999999999999999


Q ss_pred             hcccCCCCCCCCCceEEEeceec--CC-cEEEEe
Q 028350          178 SGLDRSWRRPPGVAAKLIDCKAS--KG-ICIFFS  208 (210)
Q Consensus       178 ~~vdrs~~rpP~q~akLiDa~~r--~g-~YY~~~  208 (210)
                      +.+++++...  +.++||++.++  +| .||.|.
T Consensus        91 ~~~~~~~~~~--~~a~li~a~~~~~~g~~yY~~E  122 (175)
T PF01789_consen   91 NGELASPGSG--REAELISASEREVDGKTYYEYE  122 (175)
T ss_dssp             HHCCCHCTSS--EEEEEEEEEEEEETTEEEEEEE
T ss_pred             hhhcccccCC--cceEEEEeeeeecCCccEEEEE
Confidence            9995444431  89999999998  45 488753

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=99.76  E-value=9.2e-18  Score=149.40  Aligned_cols=167  Identities=14%  Similarity=0.153  Sum_probs=111.3

Q ss_pred             ccccCccccccCCCCcceeeeeccCCCCCccceeeeeeeccccchhhhhhhhccccccccccchhhHHHHHHHHHHHh-h
Q 028350           11 MASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEEQDDDSRTKRREVMFQLAFTA-C   89 (210)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~e~~~~~~~~RR~aL~~~a~aa-~   89 (210)
                      .++.+|+..|-..+.++.++.-..     .+..+--..|             .      .....+.||++|.+++++. .
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-------------~------~~~~~~~rr~~~~~~~~~~~~   58 (263)
T PLN00067          3 TASLSPLSLSFSVSSSTSASSSAS-----SPLAVASSVS-------------P------RAAVVIHRRELLLGLALAPLI   58 (263)
T ss_pred             cccccccccccccCcccccccccc-----CCcccccccc-------------c------cccchhHHHHHHhhhhhhhhh
Confidence            357899999988888776542111     0111111111             1      1123478999999998873 2


Q ss_pred             ccccc-hhhhhhh-----------ccCceeee-----------eCCCceEEEcCCCCcCCCCC-------------CCCc
Q 028350           90 SFPAI-VSYALAA-----------NEDLRVYT-----------DELNKFEISIPQDWQLGAGE-------------PNGF  133 (210)
Q Consensus        90 ~~pa~-a~~a~AA-----------~~gF~~Y~-----------D~~dGFsf~yPs~W~~~~ge-------------~sG~  133 (210)
                      +.... .+.|.+.           ..||--|.           +.=.||+|+||.+|++.+..             .++ 
T Consensus        59 ~~~~~~~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW~~v~Vs~~~sGnycqp~c~~p~-  137 (263)
T PLN00067         59 LIAPEPPAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPW-  137 (263)
T ss_pred             hccCCchhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCCcCccccccccCccccccccCCC-
Confidence            22211 1111111           34666664           23369999999999976431             233 


Q ss_pred             ceeEEecCCCCCCcceEEEEecCC--C--CcccccccCCHHHHHHHHhhcccCCCCCCCCCceEEEeceec--CC-cEEE
Q 028350          134 KSITAFYPQEASSSSVSVVITGLG--P--DFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKAS--KG-ICIF  206 (210)
Q Consensus       134 K~V~af~p~~~~~sNVsViiTpi~--t--DftsI~sFGspeefae~LV~~vdrs~~rpP~q~akLiDa~~r--~g-~YY~  206 (210)
                       ..++|+++.  +.||+|||.|+.  +  +.++|++||+||+|+++|...+.    ..|++.++|||+.++  +| .||+
T Consensus       138 -~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~Lg~~v~----g~~~~~~eLLeAs~re~dGktYY~  210 (263)
T PLN00067        138 -VEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKLIASLGPFVT----GNSYDPDELLETSVEKIGDQTYYK  210 (263)
T ss_pred             -ceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHHHHHhhHHhh----cCCCCCcceEEeeeEeeCCeEEEE
Confidence             688999966  449999999974  2  33699999999999999998885    358888999999998  45 5999


Q ss_pred             Eee
Q 028350          207 FSI  209 (210)
Q Consensus       207 ~~~  209 (210)
                      |.+
T Consensus       211 ~E~  213 (263)
T PLN00067        211 YVL  213 (263)
T ss_pred             EEE
Confidence            876

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=99.70  E-value=1.9e-16  Score=140.98  Aligned_cols=132  Identities=19%  Similarity=0.277  Sum_probs=98.2

Q ss_pred             cchhhHHHHHHHHHHHh----hccccchh---hhh----------hhccCceeeeeCC-------------CceEEEcCC
Q 028350           72 DSRTKRREVMFQLAFTA----CSFPAIVS---YAL----------AANEDLRVYTDEL-------------NKFEISIPQ  121 (210)
Q Consensus        72 ~~~~~RR~aL~~~a~aa----~~~pa~a~---~a~----------AA~~gF~~Y~D~~-------------dGFsf~yPs  121 (210)
                      ...++||.+|+.+++++    .++|+.+.   .+.          +...||.+|.-+.             ..|+|+||.
T Consensus        42 ~~~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP~  121 (262)
T PLN00066         42 ATAVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQ  121 (262)
T ss_pred             cchhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCccccCCeEEECCC
Confidence            44579999999666652    22444333   111          2258899998654             679999999


Q ss_pred             CCcCCC---CCCCCcceeEEecCCCCCCcceEEEEecCC------CCcccccccCCHHHHHHHHhhcccCCCCCCCCCce
Q 028350          122 DWQLGA---GEPNGFKSITAFYPQEASSSSVSVVITGLG------PDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAA  192 (210)
Q Consensus       122 ~W~~~~---ge~sG~K~V~af~p~~~~~sNVsViiTpi~------tDftsI~sFGspeefae~LV~~vdrs~~rpP~q~a  192 (210)
                      +|.+..   -+..|.-.+++|..  ..+.||+|+|.|+.      .++++|+++|+||+|++.|+..+    ..+|.+.+
T Consensus       122 GW~ev~VS~~d~gg~~vd~Rf~~--~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v----~g~~~~e~  195 (262)
T PLN00066        122 GWEEVPVSIADLGGTEIDLRFAS--DKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPEL----IGEPVEEG  195 (262)
T ss_pred             CCeEeecccccCCCCceEEEecc--CCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHh----cCCCcccc
Confidence            999552   22234447788887  47889999999985      37889999999999999999987    45577789


Q ss_pred             EEEeceec--CC-cEEEEee
Q 028350          193 KLIDCKAS--KG-ICIFFSI  209 (210)
Q Consensus       193 kLiDa~~r--~g-~YY~~~~  209 (210)
                      +||++.++  +| .||.|.+
T Consensus       196 eLl~a~~re~dGktYY~~E~  215 (262)
T PLN00066        196 KVLSMEVAEHSGRTYYQFEL  215 (262)
T ss_pred             ceeEeeeeecCCcEEEEEEE
Confidence            99999987  45 6999875

>PLN03152 hypothetical protein; Provisional

Probab=98.98  E-value=9.9e-10  Score=97.07  Aligned_cols=97  Identities=21%  Similarity=0.304  Sum_probs=70.8

Q ss_pred             ccCceeeeeCCCceEEEcCCCCcCCCC-C-C-C-----C----cceeEEecCCCCCCcceEEEEecCC------CCcccc
Q 028350          102 NEDLRVYTDELNKFEISIPQDWQLGAG-E-P-N-----G----FKSITAFYPQEASSSSVSVVITGLG------PDFTRM  163 (210)
Q Consensus       102 ~~gF~~Y~D~~dGFsf~yPs~W~~~~g-e-~-s-----G----~K~V~af~p~~~~~sNVsViiTpi~------tDftsI  163 (210)
                      .+....|.  ++||++-||-++...-+ + + .     |    -+++.+=+...|...||||+|.|+.      .+.++|
T Consensus        75 t~~w~~~~--g~gf~~~~pp~f~di~e~~~~~~g~~~yg~~akp~~~~aRf~s~D~sEnVSVVIspv~~LK~tfle~kDL  152 (241)
T PLN03152         75 TKSWFQFY--GDGFSIRVPPSFEDIMEPEDYNAGLSLYGDKAKPRTFAARFASPDGSEVLSVVIRPSNQLKITFLEAKDI  152 (241)
T ss_pred             chhhhhhh--CCceEEeCCCChhhhcChhhcccccceecCCCCCcceeeeecCCCCCceEEEEEecCccccccccccCCh
Confidence            45666777  99999999999986633 1 0 1     1    2255555566688999999999975      478899


Q ss_pred             cccCCHHHHHHHHhhcccCCCCCCCC---CceEEEeceec-CC-cEEEEee
Q 028350          164 ESFGKVEAFADTLVSGLDRSWRRPPG---VAAKLIDCKAS-KG-ICIFFSI  209 (210)
Q Consensus       164 ~sFGspeefae~LV~~vdrs~~rpP~---q~akLiDa~~r-~g-~YY~~~~  209 (210)
                      ++||+|+||++.+|         |++   +.+++++.++. +| .||+|..
T Consensus       153 tDLGsp~EVgkv~v---------P~g~~~~saR~iel~~E~dGKtYY~lEy  194 (241)
T PLN03152        153 TDLGSLKEAAKIFV---------PGGATLYSARTIKVKEEEGIRTYYFYEF  194 (241)
T ss_pred             hHcCCHHHHHHhhC---------CCcccccccceeeeeeecCCceeEEEEE
Confidence            99999999997666         454   36777776654 45 5998653

>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown

Probab=81.82  E-value=5.5  Score=33.94  Aligned_cols=89  Identities=15%  Similarity=0.095  Sum_probs=43.8

Q ss_pred             eeeeeCCCceEEEcCCCCcCCC-CCCCCcceeEEecCCCCCCcceEEEEecCCCCcccccccCCHHHHHHHHhhcccCCC
Q 028350          106 RVYTDELNKFEISIPQDWQLGA-GEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSW  184 (210)
Q Consensus       106 ~~Y~D~~dGFsf~yPs~W~~~~-ge~sG~K~V~af~p~~~~~sNVsViiTpi~tDftsI~sFGspeefae~LV~~vdrs~  184 (210)
                      .-|..++-=|++.||++|...+ |+  |  ..+ |+.|..-+-|.++..-.       =++-+-..+++..-++.-...-
T Consensus         2 kKfiSpg~WFS~~YP~~W~EfED~E--~--sfl-FYnp~~WTGNfRISayk-------~~~~~ygk~~i~~EL~en~~a~   69 (153)
T PF12712_consen    2 KKFISPGAWFSMEYPADWNEFEDGE--G--SFL-FYNPDQWTGNFRISAYK-------GGSAQYGKECIRQELKENPSAK   69 (153)
T ss_dssp             EEEE-GGG-EEEEE-TT-EEE---T--T--EEE-EE-SSS---EEEEEEEE---------STTHHHHHHHHHHHH-TT-E
T ss_pred             CcccCCCceEEEecCCCcchhccCC--c--ceE-EEChHHhcCceEEEEEe-------cccccchHHHHHHHHHhCCCcc
Confidence            3567677789999999998775 33  3  344 55555567787776522       1222335677766666542100


Q ss_pred             C--CCCCCceEEEeceecCCcEEE
Q 028350          185 R--RPPGVAAKLIDCKASKGICIF  206 (210)
Q Consensus       185 ~--rpP~q~akLiDa~~r~g~YY~  206 (210)
                      +  -...+-|...++.+.+|.||+
T Consensus        70 ~vkvg~~~caYs~E~f~eeg~~Yt   93 (153)
T PF12712_consen   70 LVKVGNWECAYSKEMFQEEGAYYT   93 (153)
T ss_dssp             EEEETTEEEEEEEEEEEETTEEEE
T ss_pred             eEEeccEEEEEEhhhhhccCeeEE
Confidence            0  012233444555566888886

In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	6e-11
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	9e-09

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score = 58.0 bits (139), Expect = 6e-11
 Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 11/115 (9%)

Query: 87  TACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASS 146
            +C    I S         + Y+D  + +E   P  W     +         F       
Sbjct: 4   GSCGGVGIASL--------QRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERD 55

Query: 147 SSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASK 201
            ++SV+I+ +  D T +   G         +  ++          A+LI+ +A  
Sbjct: 56  ENLSVIISEIPSDKT-LTDLGTATDVGYRFMKTVND--ASQGDRQAELINAEARD 107

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score = 51.8 bits (123), Expect = 9e-09
 Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 6/105 (5%)

Query: 98  ALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLG 157
             +A   L+ Y D  + +E   P+ W     E         F+    ++ +VSVV+  + 
Sbjct: 1   GSSATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVV---FHDIIETTENVSVVVNTVA 57

Query: 158 PDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKG 202
              + +E  G  E   D L+  +        G ++ LI   + K 
Sbjct: 58  STKS-LEELGSPEEVGDRLLRNIIA--PSESGRSSALIAATSQKA 99

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	99.83
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	99.69
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	99.8

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=99.83  E-value=2.9e-20  Score=148.96  Aligned_cols=101  Identities=22%  Similarity=0.386  Sum_probs=85.0

Q ss_pred             hhccCceeeeeCCCceEEEcCCCCcCCCCCCCCcceeEEecCCCCCCcceEEEEecCCCCcccccccCCHHHHHHHHhhc
Q 028350          100 AANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSG  179 (210)
Q Consensus       100 AA~~gF~~Y~D~~dGFsf~yPs~W~~~~ge~sG~K~V~af~p~~~~~sNVsViiTpi~tDftsI~sFGspeefae~LV~~  179 (210)
                      ++++||++|.|+++||+|.||++|+..... .|  ..++|.|+++...||+|+|+|++ ++++|++||+|+++++.|++.
T Consensus         3 ~~~~g~~~~~D~~~gysf~~P~~W~~~~~~-~g--~~v~f~d~~~~~~~v~V~v~p~~-~~~~l~~~G~~e~va~~l~~~   78 (165)
T 2xb3_A            3 SATSGLQAYVDSYDGYEFLYPRGWVQVQVE-DP--VDVVFHDIIETTENVSVVVNTVA-STKSLEELGSPEEVGDRLLRN   78 (165)
T ss_dssp             ---CCEEEEEETTTTEEEEEETTEEEECCC-TT--EEEEEEESSCTTSEEEEEEEECS-SCCCSGGGCCHHHHHHHHHHH
T ss_pred             CCCCCceEEEcCCCCEEEEcCCCCeEecCC-CC--ceEEEECcccCCceEEEEEecCC-CCCChHHcCCHHHHHHHHHHH
Confidence            457999999999999999999999987641 25  78999999999999999999985 467999999999999999998


Q ss_pred             ccCCCCCCC--CCceEEEeceec--CC-cEEEEe
Q 028350          180 LDRSWRRPP--GVAAKLIDCKAS--KG-ICIFFS  208 (210)
Q Consensus       180 vdrs~~rpP--~q~akLiDa~~r--~g-~YY~~~  208 (210)
                      .    .++|  ++.++||++.++  +| .||.|.
T Consensus        79 ~----~~~~~~~~~~~l~~a~~r~~~G~~yY~~E  108 (165)
T 2xb3_A           79 I----IAPSESGRSSALIAATSQKADDKTYYILE  108 (165)
T ss_dssp             T----TSCTTSSCEEEEEEEEEEEETTEEEEEEE
T ss_pred             h----hcCCCCCcceEEEEeeeeecCCceEEEEE
Confidence            6    4555  689999999997  45 588754

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=99.69  E-value=2.4e-21  Score=157.37  Aligned_cols=103  Identities=17%  Similarity=0.296  Sum_probs=87.3

Q ss_pred             hhhccCceeeeeCCCceEEEcCCCCcCCCCC--CCCcceeEEecCCCCCCcceEEEEecCCCCcccccccCCHHHHHHHH
Q 028350           99 LAANEDLRVYTDELNKFEISIPQDWQLGAGE--PNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTL  176 (210)
Q Consensus        99 ~AA~~gF~~Y~D~~dGFsf~yPs~W~~~~ge--~sG~K~V~af~p~~~~~sNVsViiTpi~tDftsI~sFGspeefae~L  176 (210)
                      .+++.||++|+|+.|||+|.||++|++.+..  ..|  .+++|+|+.+...||+|+|+|++.+ ++|++||+|++|++.|
T Consensus         8 ~~~~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g--~~v~f~d~~~~~~nvsV~v~p~~~~-~si~d~G~pe~va~~l   84 (170)
T 2lnj_A            8 GVGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPG--VDVVFRDLIERDENLSVIISEIPSD-KTLTDLGTATDVGYRF   84 (170)
Confidence            3457999999999999999999999976542  235  7899999999999999999997543 7999999999999999


Q ss_pred             hhcccCCCCCCC--CCceEEEeceecC--C-cEEEEe
Q 028350          177 VSGLDRSWRRPP--GVAAKLIDCKASK--G-ICIFFS  208 (210)
Q Consensus       177 V~~vdrs~~rpP--~q~akLiDa~~r~--g-~YY~~~  208 (210)
                      ++.+    .++|  +..++||++.+++  | .||.|.
T Consensus        85 ~~~~----~~~~~~~~~a~li~a~~~~~~G~~yY~~E  117 (170)
T 2lnj_A           85 MKTV----NDASQGDRQAELINAEARDEDGQVYYTLE  117 (170)
Confidence            9987    4555  7999999999983  5 488753

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=99.80  E-value=1e-19  Score=150.60  Aligned_cols=102  Identities=25%  Similarity=0.387  Sum_probs=81.5

Q ss_pred             ccCceeeeeCCCceEEEcCCCCcCCCC-CCCCcceeEEecCCCCCCcceEEEEecCCCCcccccccCCHHHHHHHHhhcc
Q 028350          102 NEDLRVYTDELNKFEISIPQDWQLGAG-EPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGL  180 (210)
Q Consensus       102 ~~gF~~Y~D~~dGFsf~yPs~W~~~~g-e~sG~K~V~af~p~~~~~sNVsViiTpi~tDftsI~sFGspeefae~LV~~v  180 (210)
                      ++||++|.  +|||+|+||++|++..+ ..+|  ..++|+++.+.+.||+|+|+|+  ++++|++||+|++|++.|...|
T Consensus         6 ~~g~~~y~--~~gysf~yP~~W~~~~~~~~~G--~~~~f~d~~~~~~nvsV~v~p~--~~~si~dlGspe~~~~~v~~~l   79 (177)
T 1v2b_A            6 DTDFQTYN--GDGFKLQIPSKWNPNKEVEYPG--QVLRFEDNFDATSNVIVAITPT--DKKSITDFGSPEQFLSQVDYLL   79 (177)
T ss_dssp             -CCEEEEE--CSSEEEEEETTCEECCCCCSTT--EEEEEEETTEEEEEEEEEEEEC--SCSSGGGGCSHHHHHHHTGGGC
T ss_pred             CCCceEEe--cCCEEEEcCCCCcccccccCCC--ceEEEeCCcCCCccEEEEEeCC--CCCChhHCCCHHHHHHHHHHHH
Confidence            68999999  99999999999998765 4677  8999999999999999999995  6789999999999999988887


Q ss_pred             cCCCCCC-----C----C--CceEEEeceec--CC-cEEEEee
Q 028350          181 DRSWRRP-----P----G--VAAKLIDCKAS--KG-ICIFFSI  209 (210)
Q Consensus       181 drs~~rp-----P----~--q~akLiDa~~r--~g-~YY~~~~  209 (210)
                      .+.+..|     +    +  ..++||++.++  +| .||.|.+
T Consensus        80 ~~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~  122 (177)
T 1v2b_A           80 GRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSI  122 (177)
T ss_dssp             ------------------CCCEEEEEEEEEEEETTEEEEEEEE
T ss_pred             HHHhhcccccccCCcccCcccceEEEEeEEEEeCCeEEEEEEE
Confidence            7665553     2    2  66999999998  56 5888653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	210
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	1e-07

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 47.8 bits (113), Expect = 1e-07
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 16/110 (14%)

Query: 104 DLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRM 163
           D + Y    + F++ IP  W     E      +  F     ++S+V V IT    D   +
Sbjct: 2   DFQTYNG--DGFKLQIPSKW-NPNKEVEYPGQVLRFEDNFDATSNVIVAIT--PTDKKSI 56

Query: 164 ESFGKVEAFADTLVSGLDRSW-----------RRPPGVAAKLIDCKASKG 202
             FG  E F   +   L R                    A +++   ++ 
Sbjct: 57  TDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEV 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	99.81
d1tu1a_	144	Hypothetical protein PA0094 {Pseudomonas aeruginos	84.56

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.81  E-value=2.5e-20  Score=149.32  Aligned_cols=101  Identities=25%  Similarity=0.399  Sum_probs=81.1

Q ss_pred             cCceeeeeCCCceEEEcCCCCcCCCC-CCCCcceeEEecCCCCCCcceEEEEecCCCCcccccccCCHHHHHHHHhhccc
Q 028350          103 EDLRVYTDELNKFEISIPQDWQLGAG-EPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLD  181 (210)
Q Consensus       103 ~gF~~Y~D~~dGFsf~yPs~W~~~~g-e~sG~K~V~af~p~~~~~sNVsViiTpi~tDftsI~sFGspeefae~LV~~vd  181 (210)
                      ++|+||+|  |||+|+||++|.+..+ ..+|  ..++|.++.+...||+|+|+|  +++++|++||+||++++.+...+.
T Consensus         1 ~~~~~y~~--dgy~f~~P~~W~~~~~~~~~g--~d~~f~d~~~~~~nv~V~v~p--~~~~sl~~~G~p~~~~~~v~~~l~   74 (171)
T d1v2ba_           1 TDFQTYNG--DGFKLQIPSKWNPNKEVEYPG--QVLRFEDNFDATSNVIVAITP--TDKKSITDFGSPEQFLSQVDYLLG   74 (171)
T ss_dssp             CCEEEEEC--SSEEEEEETTCEECCCCCSTT--EEEEEEETTEEEEEEEEEEEE--CSCSSGGGGCSHHHHHHHTGGGC-
T ss_pred             CCcccccC--CCEEEECCCCCceecccCCCC--ceEEEeccccCCceEEEEEec--CCCcchhhccChHHHHHHHHHHHh
Confidence            58999995  8999999999987754 3445  789999999999999999998  578999999999999999999998


Q ss_pred             CCCCCC-----------CCCceEEEeceec--CC-cEEEEee
Q 028350          182 RSWRRP-----------PGVAAKLIDCKAS--KG-ICIFFSI  209 (210)
Q Consensus       182 rs~~rp-----------P~q~akLiDa~~r--~g-~YY~~~~  209 (210)
                      +.|..+           ++..++|+|+.++  +| .||.|.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~a~v~~a~~~~~~G~~YY~~Ey  116 (171)
T d1v2ba_          75 RQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSI  116 (171)
T ss_dssp             -----------------CCCEEEEEEEEEEEETTEEEEEEEE
T ss_pred             hhhhcccccccccccccccceeEEEEeeeeecCCEEEEEEEE
Confidence            776543           4677899999998  45 5887643

>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PA0094-like
domain: Hypothetical protein PA0094
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.56  E-value=1.3  Score=32.01  Aligned_cols=63  Identities=14%  Similarity=0.303  Sum_probs=40.6

Q ss_pred             ceeeeeCCCceEEEcCCCCcCCCCCCCCcceeEEecCCCCC-CcceEEEEecCCCCcccccccCCHHHHHHHHhhcccC
Q 028350          105 LRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEAS-SSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDR  182 (210)
Q Consensus       105 F~~Y~D~~dGFsf~yPs~W~~~~ge~sG~K~V~af~p~~~~-~sNVsViiTpi~tDftsI~sFGspeefae~LV~~vdr  182 (210)
                      ...|.  -+.=+|.+|.+|..-.    .  .|+++.++... ..|+.|...+++.+       .+++++++..+..|.+
T Consensus         3 ~~~Y~--~~Egs~~lP~gw~d~t----~--ni~~~~~~~~~~~~~lvIsr~~l~~~-------~~l~~~~~~~~~~l~~   66 (144)
T d1tu1a_           3 MTLYR--LHEADLEIPDAWQDQS----I--NIFKLPASGPAREASFVISRDASQGD-------APFADYVARQLENAEK   66 (144)
T ss_dssp             EEEEE--CSSEEEEEETTSEECC----B--EEEEECCBTTBCCEEEEEEEECCCTT-------SCHHHHHHHHHHHHHH
T ss_pred             CceeE--EcCEEEeCCCCceeCc----c--eEEEecCCCCCcceEEEEEeecCCCC-------CCHHHHHHHHHHHHHh
Confidence            45566  4444999999997432    1  46655554433 46776666665444       3889999998887743