Citrus Sinensis ID: 028354

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MALSSSSSSLCLHSATVLSGSQFSTPQLLFPPRVSFSYFPTKLNNNYQNNRNLSSSEYYHSSASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADLTPLNSRKVAVQFDYFKIGDTS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEcccccccccccccEEEcEEEEEEEcccccEEEEEEcccccEEEEEEEEccccEEEEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccHHHccccEEEEEEcHHHHHcccccccEEEcEEEEEEEccccEEEEEcccccccEEEEEEEEccccEEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
malsssssslclhsatvlsgsqfstpqllfpprvsfsyfptklnnnyqnnrnlssSEYYHSSASQKWRASVSFFpaflnkgkDAKVLKEELLEAIapldrgaeatpedQQRVEQIARKLegvnptkeplksdllngkWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRaqnmesgpffnqvtadltplnsrkvavqfdyfkigdts
Flexible Loop (DISEMBL)
malsssssslCLHSATVLSGSQFSTPQLLFPPRVSFSYFPTKLNNNYQNNRNLSSSEYYHSSASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIapldrgaeatpedQQRVEQIArklegvnptkeplksdllnGKWELIYTTSqsilqtqrprflRSVRNYQAINVDTLRAQNMESGPFFNQVTadltplnsrkvavqfdyfkigdts
Low Complexity Region (SEG)
MAlsssssslclhsATVLSGSQFSTPQLLFPPRVSFSYFPTKLnnnyqnnrnLssseyyhssasQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADLTPLNSRKVAVQFDYFKIGDTS
Disordered region (IsUnstruct)
***********L**ATVLSGSQFSTPQLLFPPRVSFSYFPTKLNNNY******************KWRASVSFFPAFLNKGKDAKVLKEELLEAI************************************DLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADLTPLNSRKVAVQFDYFKI****
Disordered Region (DISOPRED)
***************************************************************************************KEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADLTPLNSRKVAVQFDYFKIGD**
Disordered Region (DISEMBL)
***********LHSATVLSGSQFSTPQLLFPPRVSFSYFPTKLNNNYQNNRNLSSS**********WRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRG********QRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADLTPLNSRKVAVQFDYFKIGDTS
Disordered Region (DISPRO)
******************************PPRVSFSYFPTKL*****************SSASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADLTPLNSRKVAVQFDYFKIG***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALSSSSSSLCLHSATVLSGSQFSTPQLLFPPRVSFSYFPTKLNNNYQNNRNLSSSEYYHSSASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADLTPLNSRKVAVQFDYFKIGDTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
Q9LU85	242	Probable plastid-lipid-as	yes	no	0.9	0.780	0.523	2e-50
Q6DBN2	234	Probable plastid-lipid-as	no	no	0.652	0.585	0.627	4e-45
Q5M755	273	Probable plastid-lipid-as	no	no	0.490	0.377	0.302	5e-06
Q6K439	319	Probable plastid-lipid-as	no	no	0.576	0.379	0.297	5e-05
Q94KU6	319	Plastid lipid-associated	N/A	no	0.3	0.197	0.375	0.0004
Q9ZWQ8	323	Plastid-lipid-associated	N/A	no	0.276	0.179	0.389	0.0005
Q8LAP6	409	Probable plastid-lipid-as	no	no	0.261	0.134	0.357	0.0005
Q9ZP40	358	Plastoglobulin-1, chlorop	N/A	no	0.3	0.175	0.375	0.0008

>sp|Q9LU85|PAP4_ARATH Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana GN=PAP4 PE=1 SV=1

 Score =  198 bits (503), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 110/210 (52%), Positives = 141/210 (67%), Gaps = 21/210 (10%)

Query: 1   MALSSSSSSLCLHSATVLS-GSQFSTPQLLFPPRVSFSYFPTKLNNNYQNNRNLSSSEYY 59
           MAL S     CL +  ++S  + F+    L      F+  PTKL +  + +R        
Sbjct: 1   MALPS-----CLKTGALMSPATGFNFSGSLMKSDSGFAV-PTKLQSTRKGDRE------- 47

Query: 60  HSSASQKWRASVSFFPAFLNKGKDA---KVLKEELLEAIAPLDRGAEATPEDQQRVEQIA 116
                 + +A  SF PAFL +   A   K LK+ELLEAI PL+RGA A+P+DQ R++Q+A
Sbjct: 48  ----RLRVQAIFSFPPAFLTRNGRAEKQKQLKQELLEAIEPLERGATASPDDQLRIDQLA 103

Query: 117 RKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNM 176
           RK+E VNPTKEPLKSDL+NGKWELIYTTS SILQ ++PRFLRS+ NYQ+INVDTL+ QNM
Sbjct: 104 RKVEAVNPTKEPLKSDLVNGKWELIYTTSASILQAKKPRFLRSITNYQSINVDTLKVQNM 163

Query: 177 ESGPFFNQVTADLTPLNSRKVAVQFDYFKI 206
           E+ PF+N VT D+ PLNS+KVAV+   FKI
Sbjct: 164 ETWPFYNSVTGDIKPLNSKKVAVKLQVFKI 193

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBN2|PAP5_ARATH Probable plastid-lipid-associated protein 5, chloroplastic OS=Arabidopsis thaliana GN=PAP5 PE=2 SV=1

 Score =  181 bits (458), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 107/137 (78%)

Query: 70  SVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPL 129
           +V  FP      +  K LK EL+EAI PL+RGA A+P+DQ  ++Q+ARK+E VNPTKEPL
Sbjct: 48  AVFSFPPRNGGAEKRKQLKHELVEAIEPLERGATASPDDQLLIDQLARKVEAVNPTKEPL 107

Query: 130 KSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADL 189
           KSDL+NGKWELIYTTS +ILQ ++PRFLRS+ NYQ IN+DTL+ Q ME+ PF+N VT DL
Sbjct: 108 KSDLINGKWELIYTTSAAILQAKKPRFLRSLTNYQCINMDTLKVQRMETWPFYNSVTGDL 167

Query: 190 TPLNSRKVAVQFDYFKI 206
           TPLNS+ VAV+   FKI
Sbjct: 168 TPLNSKTVAVKLQVFKI 184

Arabidopsis thaliana (taxid: 3702)

>sp|Q5M755|PAP7_ARATH Probable plastid-lipid-associated protein 7, chloroplastic OS=Arabidopsis thaliana GN=PAP7 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 6/109 (5%)

Query: 87  LKEELLEAIAPLDRGAEATPEDQQ-RVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTT 144
           +KEEL EA+  ++RG      D++  +E + + LE  NPT EP    D + G W+LIY+T
Sbjct: 86  IKEELYEALKGINRGIFGVKSDKKTEIEGLVKLLECRNPTPEPTGELDKIGGCWKLIYST 145

Query: 145 SQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADLTPLN 193
             ++L ++R +    +R++ ++  D L+  ++  G   + +  D+  LN
Sbjct: 146 I-TVLGSKRTKL--GLRDFVSLG-DLLQQIDIAQGKTVHVLKFDVRGLN 190

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K439|PAP2_ORYSJ Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP2 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 10/131 (7%)

Query: 87  LKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTTS 145
           LK +L EA+   +RG  A+ E +  V ++  +LE  NPT  P ++  LLNGKW L YT+ 
Sbjct: 95  LKAKLKEALYGTERGLRASSETRAEVVELITQLEARNPTPAPTEALTLLNGKWILAYTSF 154

Query: 146 QSIL----QTQRPRFLRSVRNYQAINVDTLRAQNME--SGPFFN---QVTADLTPLNSRK 196
             +         P+ ++     Q I+ +    QN    SGP         A     + ++
Sbjct: 155 SQLFPLLGSGSLPQLVKVEEISQTIDSENFTVQNCIKFSGPLATTSVSTNAKFEVRSPKR 214

Query: 197 VAVQFDYFKIG 207
           V ++FD   IG
Sbjct: 215 VQIKFDEGIIG 225

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q94KU6|PAP2_BRACM Plastid lipid-associated protein 2, chloroplastic OS=Brassica campestris GN=PAP2 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 82  KDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSD-LLNGKWEL 140
           ++ +VLK  L++++   DRG  A+ E +  +  +  +LE  NPT  P  +  LLNGKW L
Sbjct: 90  EETEVLKRSLVDSLYGTDRGLSASSETRAEIGDLITQLESKNPTPAPTDALFLLNGKWIL 149

Query: 141 IYTT 144
            YT+
Sbjct: 150 AYTS 153

May stabilize the accumulated carotenoid structures.

Brassica campestris (taxid: 3711)

>sp|Q9ZWQ8|PAP_CITUN Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu GN=PAP PE=2 SV=1

 Score = 44.7 bits (104), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 87  LKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTT 144
           LK+ L+++    DRG  AT E +  + ++  +LE  NPT  P ++  LLN KW L+YT+
Sbjct: 99  LKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTS 157

Citrus unshiu (taxid: 55188)

>sp|Q8LAP6|PAP12_ARATH Probable plastid-lipid-associated protein 12, chloroplastic OS=Arabidopsis thaliana GN=PAP12 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 90  ELLEAIAPL-DRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTT 144
           +L++A+  +  RG  A+P+    VE   + LEG+   + P  SDL+ G+W L++TT
Sbjct: 77  KLIDALIGIQGRGKSASPKQLNDVESAVKVLEGLEGIQNPTDSDLIEGRWRLMFTT 132

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZP40|PG1_PEA Plastoglobulin-1, chloroplastic OS=Pisum sativum GN=PG1 PE=1 SV=1

 Score = 43.9 bits (102), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 87  LKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTTS 145
           LK  L++ +   + G  A  E +  V +   +LE  NPT  P++  DLLNG W L+YT S
Sbjct: 135 LKRSLVDTVYGTELGFRARSEVRAEVSEFVAQLEAANPTPAPVEEPDLLNGNWVLLYTAS 194

Query: 146 QSIL 149
             +L
Sbjct: 195 SELL 198

May form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.

Pisum sativum (taxid: 3888)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
224058986	247	predicted protein [Populus trichocarpa]	0.942	0.801	0.679	1e-66
255575408	262	structural molecule, putative [Ricinus c	0.938	0.751	0.665	1e-66
357445555	364	hypothetical protein MTR_2g007300 [Medic	0.7	0.403	0.789	3e-64
225448061	245	PREDICTED: probable plastid-lipid-associ	0.690	0.591	0.834	3e-64
351725241	242	uncharacterized protein LOC100306679 [Gl	0.914	0.793	0.655	3e-64
449449595	243	PREDICTED: probable plastid-lipid-associ	0.9	0.777	0.66	3e-64
298204585	228	unnamed protein product [Vitis vinifera]	0.690	0.635	0.834	3e-64
147857589	1238	hypothetical protein VITISV_041584 [Viti	0.690	0.117	0.827	5e-64
356558503	245	PREDICTED: probable plastid-lipid-associ	0.804	0.689	0.700	4e-63
388521853	245	unknown [Lotus japonicus]	0.709	0.608	0.772	1e-61

>gi|224058986|ref|XP_002299674.1| predicted protein [Populus trichocarpa] gi|222846932|gb|EEE84479.1| predicted protein [Populus trichocarpa]

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 140/206 (67%), Positives = 156/206 (75%), Gaps = 8/206 (3%)

Query: 1   MALSSSSSSLCLHSATVLSGSQFSTPQLLFPPRVSFSYFPTKLNNNYQNNRNLSSSEYYH 60
           MALSSS      HS  VL+ SQFST         S  +F T   +N  +  NLSSS   +
Sbjct: 1   MALSSSP-----HSPAVLTASQFSTHSPFPKLTTSHFFFSTGKPSNQTSYFNLSSS---Y 52

Query: 61  SSASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLE 120
           S+  + W A VSFFPAFL KGK AKVLKEELLEAI  LDRGA+A PEDQQRV++IARKLE
Sbjct: 53  STIDRSWSAKVSFFPAFLKKGKSAKVLKEELLEAIDSLDRGADAIPEDQQRVDEIARKLE 112

Query: 121 GVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGP 180
            VNPTKEPLKS LLNGKWEL+YTTSQSILQTQRP+ LRS  NYQAIN D LRAQNMES P
Sbjct: 113 AVNPTKEPLKSGLLNGKWELLYTTSQSILQTQRPKLLRSRTNYQAINADILRAQNMESWP 172

Query: 181 FFNQVTADLTPLNSRKVAVQFDYFKI 206
           FFNQVTADLTPL+++KVAV+FD FKI
Sbjct: 173 FFNQVTADLTPLSAKKVAVKFDVFKI 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575408|ref|XP_002528606.1| structural molecule, putative [Ricinus communis] gi|223531951|gb|EEF33764.1| structural molecule, putative [Ricinus communis]

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 143/215 (66%), Positives = 162/215 (75%), Gaps = 18/215 (8%)

Query: 1   MALSSSSSSLCLHSATVLSGSQFSTPQLLFPPRVSFS----YFPTK-LNNNYQNN---RN 52
           MALSSSSS        +L+ S FST     PP    +    YF ++ +  NY        
Sbjct: 10  MALSSSSS------PAILTASHFSTN----PPNPKLTTTTFYFSSRFITANYSKTSFLNL 59

Query: 53  LSSSEYYHSSASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRV 112
            SS+   +S+   KWRA VSFFPAFL K KDA VLKEELL+AIA LDRGAEATPEDQQRV
Sbjct: 60  NSSNNDNNSTFDDKWRAKVSFFPAFLRKKKDANVLKEELLDAIASLDRGAEATPEDQQRV 119

Query: 113 EQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLR 172
           ++IAR+LE VNPTK+PLKSDL+NGKWELIYTTSQSILQTQRP+FLRS  NYQAINVDTLR
Sbjct: 120 DEIARQLEAVNPTKQPLKSDLINGKWELIYTTSQSILQTQRPKFLRSKTNYQAINVDTLR 179

Query: 173 AQNMESGPFFNQVTADLTPLNSRKVAVQFDYFKIG 207
           AQNMES PFFNQVTADLTPLN++KVAV+FD FKI 
Sbjct: 180 AQNMESWPFFNQVTADLTPLNAKKVAVKFDTFKIA 214

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445555|ref|XP_003593055.1| hypothetical protein MTR_2g007300 [Medicago truncatula] gi|355482103|gb|AES63306.1| hypothetical protein MTR_2g007300 [Medicago truncatula]

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 116/147 (78%), Positives = 132/147 (89%)

Query: 61  SSASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLE 120
           ++ SQKWR +VSFFPA   KGKDA  +KEELL+AIA LDRGA+ATPEDQQ V+QIAR+LE
Sbjct: 49  ATISQKWRTNVSFFPAIFKKGKDASTIKEELLDAIASLDRGADATPEDQQSVDQIARQLE 108

Query: 121 GVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGP 180
            VNPTK+PLKS LL+GKWELIYTTSQSILQT+RP+ LRSV NYQAIN DTLRAQNMESGP
Sbjct: 109 AVNPTKQPLKSSLLDGKWELIYTTSQSILQTKRPKLLRSVTNYQAINADTLRAQNMESGP 168

Query: 181 FFNQVTADLTPLNSRKVAVQFDYFKIG 207
           FFNQVTADLTP+N++KVAV+FD FKIG
Sbjct: 169 FFNQVTADLTPINAKKVAVKFDTFKIG 195

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448061|ref|XP_002275707.1| PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic [Vitis vinifera]

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 121/145 (83%), Positives = 131/145 (90%)

Query: 62  SASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEG 121
           S S+KWR  VSFFPAFL KGKDAK LKEELL+AIAPLDRGA+AT EDQQRV+QIA +LE 
Sbjct: 52  SPSKKWRVGVSFFPAFLKKGKDAKALKEELLDAIAPLDRGADATLEDQQRVDQIASELEA 111

Query: 122 VNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPF 181
           VN  KEPLKSDLLNGKWELIYTTSQSILQTQRP+FLRS+ NYQAINVDTLRAQNMES PF
Sbjct: 112 VNSIKEPLKSDLLNGKWELIYTTSQSILQTQRPKFLRSIANYQAINVDTLRAQNMESFPF 171

Query: 182 FNQVTADLTPLNSRKVAVQFDYFKI 206
           FNQVTADLTPL ++KVAV+FD FKI
Sbjct: 172 FNQVTADLTPLTAKKVAVKFDSFKI 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725241|ref|NP_001238621.1| uncharacterized protein LOC100306679 [Glycine max] gi|255629261|gb|ACU14975.1| unknown [Glycine max]

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 137/209 (65%), Positives = 154/209 (73%), Gaps = 17/209 (8%)

Query: 1   MALSSSSSSLCLHSATVLSGSQFSTPQL-LFPPRVSFSYFPTKLNNNYQNNRNLSSSEYY 59
           MALSS S    L SA     + +S P     P  +S SYFP         N   S+    
Sbjct: 1   MALSSPS----LFSAV---NATYSVPHFHALPLSLSSSYFPI--------NVRPSTHHVL 45

Query: 60  HSSASQKWRASVSFFPAFLN-KGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARK 118
            S  + KWR  VSFF +FL  KGKDAK++KEELLEAIAPLDRGA+ATP+DQQ V+QIAR+
Sbjct: 46  VSDHNHKWRTKVSFFTSFLKQKGKDAKIIKEELLEAIAPLDRGADATPQDQQTVDQIARE 105

Query: 119 LEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMES 178
           LE V P KEPLKS+LL+GKWELIYTTSQSILQT+RP+ LRSV NYQAINVDTLRAQNMES
Sbjct: 106 LEAVTPIKEPLKSNLLDGKWELIYTTSQSILQTKRPKLLRSVANYQAINVDTLRAQNMES 165

Query: 179 GPFFNQVTADLTPLNSRKVAVQFDYFKIG 207
            PFFNQVTADLTPLN RKVAV+FD FKIG
Sbjct: 166 WPFFNQVTADLTPLNPRKVAVKFDTFKIG 194

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449595|ref|XP_004142550.1| PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic-like [Cucumis sativus] gi|449479703|ref|XP_004155682.1| PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic-like [Cucumis sativus]

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 132/200 (66%), Positives = 149/200 (74%), Gaps = 11/200 (5%)

Query: 9   SLCLHSATVLSGSQFSTPQLLFPPRVSFSYFPTKLNNNYQNNRNLSSSEYYHSSASQKWR 68
           ++ L S+T    ++   P    PPR      P+    N  +N NL       SS S KWR
Sbjct: 4   AVALSSSTATPTTKLWPPSTSQPPRFLLPIIPS----NPSSNTNL-----LTSSPSHKWR 54

Query: 69  ASVSFFPAFLNKGKDAKV--LKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTK 126
             +SFFPAFLNKGK   V  LK+ELL+AI PLDRGAEATPEDQ+ V+QI+RKLE VNPTK
Sbjct: 55  LRISFFPAFLNKGKGNNVTALKQELLQAIEPLDRGAEATPEDQEMVDQISRKLEAVNPTK 114

Query: 127 EPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVT 186
           EPLKSDLLNGKWELIYTTS+SILQT+RP+FLRS  NYQ INVD+LRAQNMES PFFNQVT
Sbjct: 115 EPLKSDLLNGKWELIYTTSRSILQTERPKFLRSKLNYQGINVDSLRAQNMESWPFFNQVT 174

Query: 187 ADLTPLNSRKVAVQFDYFKI 206
           ADL PLNSRKVAVQFD FKI
Sbjct: 175 ADLKPLNSRKVAVQFDTFKI 194

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204585|emb|CBI23860.3| unnamed protein product [Vitis vinifera]

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 121/145 (83%), Positives = 131/145 (90%)

Query: 62  SASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEG 121
           S S+KWR  VSFFPAFL KGKDAK LKEELL+AIAPLDRGA+AT EDQQRV+QIA +LE 
Sbjct: 35  SPSKKWRVGVSFFPAFLKKGKDAKALKEELLDAIAPLDRGADATLEDQQRVDQIASELEA 94

Query: 122 VNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPF 181
           VN  KEPLKSDLLNGKWELIYTTSQSILQTQRP+FLRS+ NYQAINVDTLRAQNMES PF
Sbjct: 95  VNSIKEPLKSDLLNGKWELIYTTSQSILQTQRPKFLRSIANYQAINVDTLRAQNMESFPF 154

Query: 182 FNQVTADLTPLNSRKVAVQFDYFKI 206
           FNQVTADLTPL ++KVAV+FD FKI
Sbjct: 155 FNQVTADLTPLTAKKVAVKFDSFKI 179

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147857589|emb|CAN80995.1| hypothetical protein VITISV_041584 [Vitis vinifera]

 Score =  249 bits (636), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 120/145 (82%), Positives = 130/145 (89%)

Query: 62  SASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEG 121
           S S+KWR  VSFFPAFL KGKDAK LKEELL+AIAPLDRGA+AT EDQQ V+QIA +LE 
Sbjct: 52  SPSKKWRVGVSFFPAFLKKGKDAKALKEELLDAIAPLDRGADATLEDQQXVDQIASELEA 111

Query: 122 VNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPF 181
           VN  KEPLKSDLLNGKWELIYTTSQSILQTQRP+FLRS+ NYQAINVDTLRAQNMES PF
Sbjct: 112 VNSIKEPLKSDLLNGKWELIYTTSQSILQTQRPKFLRSIANYQAINVDTLRAQNMESFPF 171

Query: 182 FNQVTADLTPLNSRKVAVQFDYFKI 206
           FNQVTADLTPL ++KVAV+FD FKI
Sbjct: 172 FNQVTADLTPLTAKKVAVKFDSFKI 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558503|ref|XP_003547545.1| PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic-like [Glycine max]

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 124/177 (70%), Positives = 144/177 (81%), Gaps = 8/177 (4%)

Query: 31  PPRVSFSYFPTKLNNNYQNNRNLSSSEYYHSSASQKWRASVSFFPAFLNKGKDAKVLKEE 90
           P  +S S+FP         N   S+  + H S + KWRA VSFF +FL KGKDAK++KEE
Sbjct: 29  PLSLSSSHFPI--------NIRPSTHHHVHVSHNHKWRAKVSFFTSFLKKGKDAKIIKEE 80

Query: 91  LLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQ 150
           +LEAIAPLDRGA+ATP+DQQ ++QIAR+LE V P KEPLK++LL+GKWELIYTTSQSILQ
Sbjct: 81  MLEAIAPLDRGADATPQDQQTIDQIARELEAVTPIKEPLKTNLLDGKWELIYTTSQSILQ 140

Query: 151 TQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADLTPLNSRKVAVQFDYFKIG 207
           T+RP+ LRSV NYQAINVDTLRAQNMES PFFNQVTADLTPLN RKVAV+FD FKIG
Sbjct: 141 TKRPKLLRSVANYQAINVDTLRAQNMESWPFFNQVTADLTPLNPRKVAVKFDTFKIG 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521853|gb|AFK48988.1| unknown [Lotus japonicus]

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/154 (77%), Positives = 134/154 (87%), Gaps = 5/154 (3%)

Query: 59  YHSS----ASQKWRASVSFFPAFLN-KGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVE 113
           YH+S     S+KWRA VSFFPAFLN K KDA  +K+ELL+AIAPLDRGA+AT EDQQ ++
Sbjct: 44  YHTSHSLAISEKWRAKVSFFPAFLNNKRKDASTIKQELLDAIAPLDRGADATLEDQQTID 103

Query: 114 QIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRA 173
           QIARKLE VNPTK PLKS+LL+GKWELIYTTSQSILQT+RP+ LRSV NYQAIN DTLRA
Sbjct: 104 QIARKLEAVNPTKNPLKSNLLDGKWELIYTTSQSILQTKRPKLLRSVTNYQAINADTLRA 163

Query: 174 QNMESGPFFNQVTADLTPLNSRKVAVQFDYFKIG 207
           QNMES PFFNQVTADLTP+N+RKVAV+FD FKI 
Sbjct: 164 QNMESWPFFNQVTADLTPVNTRKVAVKFDTFKIA 197

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:2092150	242	AT3G26070 [Arabidopsis thalian	0.661	0.574	0.669	3.8e-46
TAIR|locus:2092165	234	AT3G26080 [Arabidopsis thalian	0.652	0.585	0.627	4e-42
TAIR|locus:2178133	273	AT5G09820 [Arabidopsis thalian	0.490	0.377	0.302	4.7e-06
TAIR|locus:2136627	318	FIB "fibrillin" [Arabidopsis t	0.661	0.437	0.270	4.8e-06
TAIR|locus:2132006	310	AT4G22240 [Arabidopsis thalian	0.523	0.354	0.285	4.9e-05
UNIPROTKB|O99019	326	O99019 "Light-induced protein,	0.595	0.383	0.253	0.00014
UNIPROTKB|P80471	326	P80471 "Light-induced protein,	0.595	0.383	0.253	0.00014

TAIR|locus:2092150 AT3G26070 [Arabidopsis thaliana (taxid:3702)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 95/142 (66%), Positives = 116/142 (81%)

Query:    68 RASVSFFPAFLNKGKDA---KVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNP 124
             +A  SF PAFL +   A   K LK+ELLEAI PL+RGA A+P+DQ R++Q+ARK+E VNP
Sbjct:    52 QAIFSFPPAFLTRNGRAEKQKQLKQELLEAIEPLERGATASPDDQLRIDQLARKVEAVNP 111

Query:   125 TKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQ 184
             TKEPLKSDL+NGKWELIYTTS SILQ ++PRFLRS+ NYQ+INVDTL+ QNME+ PF+N 
Sbjct:   112 TKEPLKSDLVNGKWELIYTTSASILQAKKPRFLRSITNYQSINVDTLKVQNMETWPFYNS 171

Query:   185 VTADLTPLNSRKVAVQFDYFKI 206
             VT D+ PLNS+KVAV+   FKI
Sbjct:   172 VTGDIKPLNSKKVAVKLQVFKI 193

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2092165 AT3G26080 [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 86/137 (62%), Positives = 107/137 (78%)

Query:    70 SVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPL 129
             +V  FP      +  K LK EL+EAI PL+RGA A+P+DQ  ++Q+ARK+E VNPTKEPL
Sbjct:    48 AVFSFPPRNGGAEKRKQLKHELVEAIEPLERGATASPDDQLLIDQLARKVEAVNPTKEPL 107

Query:   130 KSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADL 189
             KSDL+NGKWELIYTTS +ILQ ++PRFLRS+ NYQ IN+DTL+ Q ME+ PF+N VT DL
Sbjct:   108 KSDLINGKWELIYTTSAAILQAKKPRFLRSLTNYQCINMDTLKVQRMETWPFYNSVTGDL 167

Query:   190 TPLNSRKVAVQFDYFKI 206
             TPLNS+ VAV+   FKI
Sbjct:   168 TPLNSKTVAVKLQVFKI 184

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

TAIR|locus:2178133 AT5G09820 [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 4.7e-06, P = 4.7e-06
 Identities = 33/109 (30%), Positives = 62/109 (56%)

Query:    87 LKEELLEAIAPLDRGAEATPEDQQ-RVEQIARKLEGVNPTKEPL-KSDLLNGKWELIYTT 144
             +KEEL EA+  ++RG      D++  +E + + LE  NPT EP  + D + G W+LIY+T
Sbjct:    86 IKEELYEALKGINRGIFGVKSDKKTEIEGLVKLLECRNPTPEPTGELDKIGGCWKLIYST 145

Query:   145 SQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADLTPLN 193
               ++L ++R +    +R++ ++  D L+  ++  G   + +  D+  LN
Sbjct:   146 I-TVLGSKRTKL--GLRDFVSLG-DLLQQIDIAQGKTVHVLKFDVRGLN 190

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

TAIR|locus:2136627 FIB "fibrillin" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 4.8e-06, P = 4.8e-06
 Identities = 40/148 (27%), Positives = 71/148 (47%)

Query:    69 ASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEP 128
             ++VS     +   ++ + LK  L +++   DRG   + + +  + ++  +LE  NPT  P
Sbjct:    76 STVSVADKAIESVEETERLKRSLADSLYGTDRGLSVSSDTRAEISELITQLESKNPTPAP 135

Query:   129 LKS-DLLNGKWELIYTTSQSI--LQTQRPRFLRSVRNY-QAINVDTLRAQNME--SGPFF 182
              ++  LLNGKW L YT+   +  L ++R   L  V    Q I+ D+   QN    +GPF 
Sbjct:   136 NEALFLLNGKWILAYTSFVGLFPLLSRRIEPLVKVDEISQTIDSDSFTVQNSVRFAGPFS 195

Query:   183 N---QVTADLTPLNSRKVAVQFDYFKIG 207
                    A     + ++V ++F+   IG
Sbjct:   196 TTSFSTNAKFEIRSPKRVQIKFEQGVIG 223

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010205 "photoinhibition" evidence=IMP

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2132006 AT4G22240 [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 4.9e-05, P = 4.9e-05
 Identities = 34/119 (28%), Positives = 60/119 (50%)

Query:    82 KDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWEL 140
             ++ + LK  L++++   DRG  A+ E +  +  +  +LE  NPT  P ++  LLNGKW L
Sbjct:    81 EETERLKRSLVDSLYGTDRGLSASSETRAEIGDLITQLESKNPTPAPTEALFLLNGKWIL 140

Query:   141 IYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQVTADLT-PLNSRKVA 198
              YT+  ++     P   R +     I VD + +Q ++S  F  Q +     PL +  ++
Sbjct:   141 AYTSFVNLF----PLLSRGI--VPLIKVDEI-SQTIDSDNFTVQNSVRFAGPLGTNSIS 192

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

UNIPROTKB|O99019 O99019 "Light-induced protein, chloroplastic" [Solanum demissum (taxid:50514)]

 Score = 112 (44.5 bits), Expect = 0.00014, P = 0.00014
 Identities = 34/134 (25%), Positives = 65/134 (48%)

Query:    83 DAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELI 141
             + ++LK++L +++   +RG  A+ E +  + ++  +LE  NP   P ++  LLNGKW L 
Sbjct:    98 EIELLKKQLADSLYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILA 157

Query:   142 YTTSQSI---LQTQRPRFLRSVRNYQAINVDTLRAQN--MESGPFFN---QVTADLTPLN 193
             YT+   +   L       +R     Q I+ ++   QN  + +GP         A     +
Sbjct:   158 YTSFSGLFPLLSRGNLPLVRVEEISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRS 217

Query:   194 SRKVAVQFDYFKIG 207
              ++V ++F+   IG
Sbjct:   218 PKRVQIKFEEGIIG 231

GO:0003674 "molecular_function" evidence=ND

GO:0006950 "response to stress" evidence=IEP

GO:0009535 "chloroplast thylakoid membrane" evidence=ISS

UNIPROTKB|P80471 P80471 "Light-induced protein, chloroplastic" [Solanum tuberosum (taxid:4113)]

 Score = 112 (44.5 bits), Expect = 0.00014, P = 0.00014
 Identities = 34/134 (25%), Positives = 65/134 (48%)

Query:    83 DAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELI 141
             + ++LK++L +++   +RG  A+ E +  + ++  +LE  NP   P ++  LLNGKW L 
Sbjct:    98 EIELLKKQLADSLYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILA 157

Query:   142 YTTSQSI---LQTQRPRFLRSVRNYQAINVDTLRAQN--MESGPFFN---QVTADLTPLN 193
             YT+   +   L       +R     Q I+ ++   QN  + +GP         A     +
Sbjct:   158 YTSFSGLFPLLSRGNLPLVRVEEISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRS 217

Query:   194 SRKVAVQFDYFKIG 207
              ++V ++F+   IG
Sbjct:   218 PKRVQIKFEEGIIG 231


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      210       178   0.00086  109 3  11 22  0.42    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  546 (58 KB)
  Total size of DFA:  136 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.24u 0.12s 18.36t   Elapsed:  00:00:01
  Total cpu time:  18.24u 0.12s 18.36t   Elapsed:  00:00:01
  Start:  Mon May 20 16:10:49 2013   End:  Mon May 20 16:10:50 2013

GO:0003674 "molecular_function" evidence=ND

GO:0006950 "response to stress" evidence=IEP

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LU85	PAP4_ARATH	No assigned EC number	0.5238	0.9	0.7809	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00026573001	SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (245 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00026129001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (273 aa)			•	•					0.528
	GSVIVG00022574001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (207 aa)			•						0.505
	GSVIVG00035640001	SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence; (118 aa)			•						0.504
	GSVIVG00026973001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (166 aa)			•						0.504
	GSVIVG00009465001	SubName- Full=Chromosome undetermined scaffold_235, whole genome shotgun sequence; (234 aa)			•						0.503
	GSVIVG00006255001	SubName- Full=Chromosome chr1 scaffold_166, whole genome shotgun sequence; (442 aa)			•						0.502
	GSVIVG00007397001	SubName- Full=Chromosome chr16 scaffold_189, whole genome shotgun sequence; (251 aa)			•						0.501
	GSVIVG00002625001	SubName- Full=Chromosome undetermined scaffold_133, whole genome shotgun sequence; (149 aa)			•						0.499
	GSVIVG00022834001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (353 aa)			•	•					0.496
	GSVIVG00027603001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (254 aa)			•						0.496

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
pfam04755	196	pfam04755, PAP_fibrillin, PAP_fibrillin	1e-28

>gnl|CDD|218245 pfam04755, PAP_fibrillin, PAP_fibrillin

 Score =  106 bits (265), Expect = 1e-28
 Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 9/125 (7%)

Query: 87  LKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTTS 145
           LK +LL+AI   +RG  A+ +D+  +E    +LE +NPT  P +S DLLNGKW L+YTTS
Sbjct: 3   LKRKLLDAIYGTNRGLRASSDDRAEIESAVTQLEALNPTPAPTESLDLLNGKWRLLYTTS 62

Query: 146 QSI---LQTQRPRFLRSVRNYQAINVDTLRAQNME--SGPFFN---QVTADLTPLNSRKV 197
           + +   L   R   L+  + YQ I+V+ L   N    SGP       V A     + ++V
Sbjct: 63  KELLPLLARGRLPLLKVGQIYQTIDVNNLTVYNSVTFSGPLAEGSFSVRAKFEIRSPKRV 122

Query: 198 AVQFD 202
            ++F+
Sbjct: 123 QIRFE 127

This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins. Length = 196

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
PF04755	198	PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843	99.96

>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle

Probab=99.96  E-value=3.9e-29  Score=208.19  Aligned_cols=123  Identities=39%  Similarity=0.627  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCC-CCCCceEEEEEecccccccc---cCCceeeee
Q 028354           85 KVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTTSQSILQT---QRPRFLRSV  160 (210)
Q Consensus        85 ~~lK~~LL~aiagt~RG~~as~~qr~~IeelI~eLEalNPt~~P~~s-~lL~G~W~LlYTTs~~~lg~---~~~p~l~vG  160 (210)
                      +++|++||+++++++||+.+++++|++|+++|++||++||+++|+++ ++|+|+|+|+|||+..+...   ...+++++|
T Consensus         1 ~~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~~~~~   80 (198)
T PF04755_consen    1 QDLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPGVRVG   80 (198)
T ss_pred             ChHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCcccccccccccccccc
Confidence            46999999999999999999999999999999999999999999998 99999999999999998853   556778899


Q ss_pred             ceEEEEeCCCCeEEEeee---CCCcc---eEEeEEEEeCCCeEEEEEeeeEEe
Q 028354          161 RNYQAINVDTLRAQNMES---GPFFN---QVTADLTPLNSRKVAVQFDYFKIG  207 (210)
Q Consensus       161 ~i~Q~ID~~~~rv~NvV~---~p~~~---~V~A~fe~~s~kRV~V~Fe~~~I~  207 (210)
                      +|||+||.+++++.|+|.   ||+..   .+.|++++.+++|+.|+|+++.++
T Consensus        81 ~v~Q~id~~~~~~~N~v~~~~~~~~~~~~~v~a~~~~~~~~rv~v~f~~~~l~  133 (198)
T PF04755_consen   81 RVFQTIDADNGRVENVVELSGFPLLEGSVSVRASLEVRSPRRVEVTFERASLK  133 (198)
T ss_pred             ceEEEEECCCceEEEEEEEeccCceEEEEEEEEEEEEccccEEEEEEEeeEEc
Confidence            999999999999999999   45433   789999999999999999999875

The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00