Citrus Sinensis ID: 028409

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MAEKPQPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVSGQLQLFGLSSGGADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFSCVLHKWCIWKTLKEDFVPLF
Secondary Structure (PSIPRED)
cccccccEEEEEccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHcccccccccccccEEEEEEEcccccEEEEEEEccccccccHHHHHHHHHHHcccccEEEEccccccEEEEcccHHHHHHHHHHHHccccccccEEEEEccccccEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEccccccccHHHcccccHHHHHHHHHHHcHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccEEEEEEEcHHHccccHHHHHHHHHHHcccccEEEEccccccEEEEEcccHHHHHHHHHHHcccccHccEEEEEEHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MAEKPQPVRVLYCSIcslpaeycefgpdfekckpwliknapelYPDLLKEANEKEAEKVSGQLqlfglssggadgatsgqtssskqeevkrlpggkikkkeRQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKkfatgasvvkgptekeqidvqgdISYDIVEFITDTWPAVISLSIFFSFSCVLHKWCIWKTLkedfvplf
Flexible Loop (DISEMBL)
maekpqpvrVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVSGQLQLFGLSSGGADGAtsgqtssskqeevkrlpggkikkkerqevviekvvrnkrkcitivkgldlfgvKLSDASKKLGKkfatgasvvkgptekeqidvqgDISYDIVEFITDTWPAVISLSIFFSFSCVLHKWCIWKTLKEDFVPLF
Low Complexity Region (SEG)
MAEKPQPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLkeanekeaekVsgqlqlfglssggADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFSCVLHKWCIWKTLKEDFVPLF
Disordered region (IsUnstruct)
*******VRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLL********************************************************VVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVK*****EQIDVQGDISYDIVEFITDTWPAVISLSIFFSFSCVLHKWCIWKTLKEDFV***
Disordered Region (DISOPRED)
****PQPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDL*************************************************************KVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFSCVLHKWCIWKTLKEDFVPLF
Disordered Region (DISEMBL)
MAEKPQPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVSGQLQLFGLSSG********************LPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFSCVLHKWCIWKTLKEDFVPLF
Disordered Region (DISPRO)
****PQPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAE******************************************KERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFSCVLHKWCIWKTLKEDFVPLF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEKPQPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVSGQLQLFGLSSGGADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFSCVLHKWCIWKTLKEDFVPLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
O42929	190	Translation machinery-ass	yes	no	0.799	0.878	0.377	2e-25
Q2TVZ2	194	Translation machinery-ass	yes	no	0.770	0.829	0.350	9e-25
Q6GLZ1	198	Density-regulated protein	N/A	no	0.760	0.803	0.395	3e-24
Q1E556	200	Translation machinery-ass	N/A	no	0.770	0.805	0.345	4e-24
Q5RFP5	198	Density-regulated protein	yes	no	0.765	0.808	0.397	4e-24
A1C8E3	194	Translation machinery-ass	N/A	no	0.794	0.855	0.349	9e-24
Q6DFN7	200	Density-regulated protein	yes	no	0.751	0.785	0.375	1e-23
Q9P3T4	187	Translation machinery-ass	N/A	no	0.760	0.850	0.380	1e-23
Q4WBL6	194	Translation machinery-ass	yes	no	0.770	0.829	0.374	1e-23
Q2HJ47	198	Density-regulated protein	yes	no	0.765	0.808	0.397	2e-23

>sp|O42929|DENR_SCHPO Translation machinery-associated protein 22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tma22 PE=3 SV=1

 Score =  115 bits (289), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/175 (37%), Positives = 102/175 (58%), Gaps = 8/175 (4%)

Query: 5   PQPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVSGQLQ 64
           P+   VLYC +C+LP EYCEF    +KCK WL  + P++Y  L  E +      +S  L+
Sbjct: 7   PKLKSVLYCDVCTLPVEYCEFEGTLKKCKEWLKSSHPDVYDKLYGEQD------LSKDLE 60

Query: 65  LFGLSSGGADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGL 124
                SG  D  ++ +   +K  + ++    +  K+   +V+I+ + R KRK +T V+GL
Sbjct: 61  NTLNVSGTKD--SNAEEQPAKLTKEEKRVEREEAKRMASKVLIKTIERTKRKRVTTVQGL 118

Query: 125 DLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAV 179
           D FG++   A+K L  KFATGASV K   +K++I VQGD++YDI +FI + +  V
Sbjct: 119 DAFGIETKKAAKMLANKFATGASVTKTADKKDEIVVQGDLNYDIFDFILEKFKEV 173

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q2TVZ2|DENR_ASPOR Translation machinery-associated protein 22 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=tma22 PE=3 SV=1

 Score =  113 bits (282), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 97/171 (56%), Gaps = 10/171 (5%)

Query: 6   QPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVSGQLQL 65
           Q   V+YC +C+LP EYCEFG   +KC+ WL +  PELY  L  E      E +S  L  
Sbjct: 13  QARHVVYCGVCTLPPEYCEFGGTAKKCEEWLKEKQPELYQRLHSE------EAISANLST 66

Query: 66  FGLSSGGADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLD 125
             +S+       + +  +       R      ++K   +V I++V RNKRK +T++ GL+
Sbjct: 67  LSISAQERAAKDAAKKEAKAALAEAR----DAERKAASKVQIKRVERNKRKHVTVIAGLE 122

Query: 126 LFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 176
           ++G++    +K+LGKKFATG+SV +     E+I VQGD+S D+ +++ + +
Sbjct: 123 VYGLENKKVAKELGKKFATGSSVTRSAAGNEEITVQGDVSDDVQDWLLEVY 173

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

>sp|Q6GLZ1|DENR_XENLA Density-regulated protein OS=Xenopus laevis GN=denr PE=2 SV=1

 Score =  111 bits (278), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 105/182 (57%), Gaps = 23/182 (12%)

Query: 7   PVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDL-LKEANEKEAEKVSGQLQL 65
           P++VLYC +CSLP EYCE+ PD  KC+ WL KN P+++  L L    ++E   V GQ   
Sbjct: 28  PLKVLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPDVFAKLTLGHIPKQETGTVEGQ--- 84

Query: 66  FGLSSGGADGATSGQTSSSKQEEVKRLPGGKIKKKER---QEVVIEKVVRNKRKCITIVK 122
                     ATSG+    K+   KR   G+IK+K++   Q + I K+ R K+K +T V 
Sbjct: 85  ----------ATSGEEEEKKK--QKRGGRGQIKQKKKTVPQRITIAKIPRAKKKYVTRVC 132

Query: 123 GLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISL 182
           GL  F ++L DA +   +KF+ GASV    T +++I +QGD + DI++ I + WP V   
Sbjct: 133 GLATFEIELKDAQRFFAQKFSCGASV----TGEDEIIIQGDFTDDIIDVIQEKWPEVDDD 188

Query: 183 SI 184
           SI
Sbjct: 189 SI 190

May be involved in the translation of target mRNAs by scanning and recognition of the initiation codon.

Xenopus laevis (taxid: 8355)

>sp|Q1E556|DENR_COCIM Translation machinery-associated protein 22 OS=Coccidioides immitis (strain RS) GN=TMA22 PE=3 SV=1

 Score =  111 bits (277), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 99/171 (57%), Gaps = 10/171 (5%)

Query: 4   KPQPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVSGQL 63
           +PQ   ++YC +CSLP EYCEFG   +KC+ WL +N P ++  L  E      E ++  L
Sbjct: 15  EPQARHIVYCGVCSLPPEYCEFGGTAKKCEEWLHENNPSMHQKLYSE------ETIAANL 68

Query: 64  QLFGLSSGGADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKG 123
               + +       + + ++ K+ +   +     ++K   +V I++V RNKRK +T++ G
Sbjct: 69  STLSIQAR----ERAAKDAAKKEAKAALVETRNQERKAAAKVQIKRVERNKRKHVTVIAG 124

Query: 124 LDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITD 174
           L+  G+     +K+LGKKFATG+SV K P   E+I VQGD+  D++E++ +
Sbjct: 125 LEAHGLDNKKVAKELGKKFATGSSVTKNPAGGEEITVQGDVCEDVLEWLVE 175

Coccidioides immitis (strain RS) (taxid: 246410)

>sp|Q5RFP5|DENR_PONAB Density-regulated protein OS=Pongo abelii GN=DENR PE=2 SV=1

 Score =  111 bits (277), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/181 (39%), Positives = 104/181 (57%), Gaps = 21/181 (11%)

Query: 7   PVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVSGQLQLF 66
           P+RVLYC +CSLP EYCE+ PD  KC+ WL KN P  +  L  E + K         Q  
Sbjct: 28  PLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPNEFAKLTVENSPK---------QEA 78

Query: 67  GLSSGGADGATSGQTSSSKQEEVKRLPGGKIKKKER---QEVVIEKVVRNKRKCITIVKG 123
           G+S G     T+G+    K+   KR   G+IK+K++   Q+V I K+ R K+K +T V G
Sbjct: 79  GISEG---QGTAGEEEEKKK--QKRGGRGQIKQKKKTVPQKVTIAKIPRAKKKYVTRVCG 133

Query: 124 LDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLS 183
           L  F + L +A +   +KF+ GASV    T +++I +QGD + DI++ I + WP V+  S
Sbjct: 134 LATFEIDLKEAQRFFAQKFSCGASV----TGEDEIIIQGDFTDDIIDVIQEKWPEVVDDS 189

Query: 184 I 184
           I
Sbjct: 190 I 190

May be involved in the translation of target mRNAs by scanning and recognition of the initiation codon.

Pongo abelii (taxid: 9601)

>sp|A1C8E3|DENR_ASPCL Translation machinery-associated protein 22 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=tma22 PE=3 SV=1

 Score =  110 bits (274), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 98/183 (53%), Gaps = 17/183 (9%)

Query: 1   MAEKPQPV-------RVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANE 53
           M E  QP        +++YC +C+LP EYCEFG   +KC+ WL  N  E Y  L  E   
Sbjct: 1   MGEIAQPAFFESKLKQIVYCGVCTLPPEYCEFGGTAKKCEEWLKDNHEETYQRLYSE--- 57

Query: 54  KEAEKVSGQLQLFGLSSGGADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRN 113
              E +S  L    +S        + +  +       R      ++K   +V I++V RN
Sbjct: 58  ---EALSSNLSTLSVSVRERAAKDAAKKEAKAALAEAR----DAERKAAAKVQIKRVERN 110

Query: 114 KRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFIT 173
           KRK +T++ GL++ G++    +K+LGKKFATG+SV K P   E+I VQGD+S D+ E++ 
Sbjct: 111 KRKHVTVITGLEVHGLENKKVAKELGKKFATGSSVTKSPAGVEEITVQGDVSEDVQEWLL 170

Query: 174 DTW 176
           + +
Sbjct: 171 EVY 173

Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612)

>sp|Q6DFN7|DENR_XENTR Density-regulated protein OS=Xenopus tropicalis GN=denr PE=2 SV=1

 Score =  109 bits (273), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 103/184 (55%), Gaps = 27/184 (14%)

Query: 7   PVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVSGQLQLF 66
           P++VLYC +CSLP EYCE+ PD  KC+ WL KN P+ +  L                   
Sbjct: 30  PLKVLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPDEFSKL-----------------TL 72

Query: 67  GLSSGGADGATSGQTSSS---KQEEVKRLPGGKIKKKER---QEVVIEKVVRNKRKCITI 120
           G+S     G   GQ +S    ++++ KR   G+IK+K++   Q+V I K+ R K+K +T 
Sbjct: 73  GISPKQETGTVEGQATSGEEEEKKKQKRGGRGQIKQKKKTVPQKVTIAKIPRAKKKYVTR 132

Query: 121 VKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVI 180
           V GL  F ++L DA +   +KF+ GASV    T +++I +QGD + DI++ I + WP V 
Sbjct: 133 VCGLATFEIELKDAQRFFAQKFSCGASV----TGEDEIIIQGDFTDDIIDVIQEKWPEVD 188

Query: 181 SLSI 184
             SI
Sbjct: 189 DDSI 192

May be involved in the translation of target mRNAs by scanning and recognition of the initiation codon.

Xenopus tropicalis (taxid: 8364)

>sp|Q9P3T4|DENR_NEUCR Translation machinery-associated protein 22 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tma-22 PE=3 SV=1

 Score =  109 bits (273), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/171 (38%), Positives = 94/171 (54%), Gaps = 12/171 (7%)

Query: 10  VLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLK-EANEKEAEKVSGQLQLFGL 68
           V+YC +CSLP EYCE+G   +KC+ WL KN P +Y  +   E  E E   +S + Q   +
Sbjct: 9   VVYCGVCSLPPEYCEYGGTVKKCQQWLEKNQPTMYSRIWSPEVLEAEMASLSVEAQERAM 68

Query: 69  SSGGADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFG 128
                  A +      + +           K+    V I+++ RNKRK +T V GL+ FG
Sbjct: 69  KDAKKKAAKAEAAEQKQAD-----------KRANSVVTIKRIERNKRKYVTSVSGLEAFG 117

Query: 129 VKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAV 179
           ++L   +K  GKKFATG+SV K P+  E+I VQGD+S +I EFI + +  V
Sbjct: 118 LELKKVAKDFGKKFATGSSVTKVPSGGEEIVVQGDVSGEIEEFILEKYKEV 168

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q4WBL6|DENR_ASPFU Translation machinery-associated protein 22 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=tma22 PE=3 SV=2

 Score =  109 bits (273), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 94/171 (54%), Gaps = 10/171 (5%)

Query: 6   QPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVSGQLQL 65
           Q  +V+YC +C+LP EYCEFG   +KC+ WL  N  ELY  L  E      E +S  L  
Sbjct: 13  QAKKVVYCGVCTLPPEYCEFGGTAKKCEEWLKDNHAELYQRLYSE------EALSSNLSE 66

Query: 66  FGLSSGGADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLD 125
             +S        + +  +       R    K   K    V I++V RNKRK +T++ GL+
Sbjct: 67  LSVSVRERAAKDAAKKEAKAAAAEARDAERKAAAK----VQIKRVERNKRKHVTVITGLE 122

Query: 126 LFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 176
           + G++    +K+LGKKFATG+SV K P   E+I VQGD+S D+ E++ + +
Sbjct: 123 VHGLENKKVAKELGKKFATGSSVTKSPAGVEEITVQGDVSEDVKEWLLELY 173

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q2HJ47|DENR_BOVIN Density-regulated protein OS=Bos taurus GN=DENR PE=2 SV=1

 Score =  108 bits (271), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/181 (39%), Positives = 103/181 (56%), Gaps = 21/181 (11%)

Query: 7   PVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVSGQLQLF 66
           P+RVLYC +CSLP EYCE+ PD  KC+ WL KN P  +  L  E + K         Q  
Sbjct: 28  PLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPNEFAKLTVENSPK---------QEA 78

Query: 67  GLSSGGADGATSGQTSSSKQEEVKRLPGGKIKKKER---QEVVIEKVVRNKRKCITIVKG 123
           G+S G     T+G+    K+   KR   G+IK+K++   Q+V I K+ R K+K +T V G
Sbjct: 79  GISEG---QGTAGEEEEKKK--QKRGGRGQIKQKKKTVPQKVTIAKIPRAKKKYVTRVCG 133

Query: 124 LDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLS 183
           L  F + L +A +   +KF+ GASV    T +++I +QGD + DI++ I + WP V   S
Sbjct: 134 LATFEIDLKEAQRFFAQKFSCGASV----TGEDEIIIQGDFTDDIIDVIQEKWPEVDDDS 189

Query: 184 I 184
           I
Sbjct: 190 I 190

May be involved in the translation of target mRNAs by scanning and recognition of the initiation codon.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
225429534	197	PREDICTED: translation machinery-associa	0.889	0.944	0.866	2e-87
224092186	200	predicted protein [Populus trichocarpa]	0.889	0.93	0.857	9e-87
225429532	199	PREDICTED: translation machinery-associa	0.889	0.934	0.851	3e-85
225444903	197	PREDICTED: translation machinery-associa	0.889	0.944	0.828	1e-83
224142891	200	predicted protein [Populus trichocarpa]	0.889	0.93	0.826	7e-83
297807241	198	eukaryotic translation initiation factor	0.889	0.939	0.813	6e-82
22326739	198	Translation initiation factor SUI1 famil	0.889	0.939	0.813	1e-81
449452514	193	PREDICTED: translation machinery-associa	0.875	0.948	0.817	2e-81
397787596	198	putative eukaryotic translation initiati	0.889	0.939	0.792	1e-79
388499658	193	unknown [Lotus japonicus]	0.875	0.948	0.801	5e-79

>gi|225429534|ref|XP_002279109.1| PREDICTED: translation machinery-associated protein 22 isoform 1 [Vitis vinifera] gi|296081652|emb|CBI20657.3| unnamed protein product [Vitis vinifera]

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 162/187 (86%), Positives = 175/187 (93%), Gaps = 1/187 (0%)

Query: 1   MAEKPQPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVS 60
           MAEKPQPVRVLYCS+CSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEA+EKEA+KVS
Sbjct: 1   MAEKPQPVRVLYCSVCSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEASEKEADKVS 60

Query: 61  GQLQLFGLSSG-GADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCIT 119
            QLQ  G+SSG G + A SG+TS+SKQEEVKRLPGGKIKKKE+QEV+IEKVVRNKRKCIT
Sbjct: 61  EQLQSVGISSGAGNETAPSGKTSTSKQEEVKRLPGGKIKKKEKQEVIIEKVVRNKRKCIT 120

Query: 120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAV 179
           IVKGLDLFGVKL DASKKLGKKFATGASVVKGPT+KEQIDVQGDISYDIVEF+TDTWP V
Sbjct: 121 IVKGLDLFGVKLGDASKKLGKKFATGASVVKGPTDKEQIDVQGDISYDIVEFVTDTWPDV 180

Query: 180 ISLSIFF 186
              +I+F
Sbjct: 181 PETAIYF 187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092186|ref|XP_002309499.1| predicted protein [Populus trichocarpa] gi|222855475|gb|EEE93022.1| predicted protein [Populus trichocarpa]

 Score =  325 bits (832), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 163/190 (85%), Positives = 173/190 (91%), Gaps = 4/190 (2%)

Query: 1   MAEKPQPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVS 60
           MAEKP+PV+VLYC +CSLPAEYCEFGPDFEKCKPWLI NAPELYPDLLKEANEKEAE+VS
Sbjct: 1   MAEKPEPVKVLYCPLCSLPAEYCEFGPDFEKCKPWLIINAPELYPDLLKEANEKEAERVS 60

Query: 61  GQLQLFGLSSGGADGATS----GQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRK 116
            QLQ  G+SS GADGA S    G TSSSKQEEVKRLPGGKIKKK RQEVVIEKVVRNKRK
Sbjct: 61  EQLQSAGISSSGADGAASFVQSGVTSSSKQEEVKRLPGGKIKKKARQEVVIEKVVRNKRK 120

Query: 117 CITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 176
           CITI+KGLDLFG+KLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI+YDIVEFIT+TW
Sbjct: 121 CITIIKGLDLFGIKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIAYDIVEFITETW 180

Query: 177 PAVISLSIFF 186
           P V   +IFF
Sbjct: 181 PDVPETAIFF 190

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429532|ref|XP_002279152.1| PREDICTED: translation machinery-associated protein 22 isoform 2 [Vitis vinifera]

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 161/189 (85%), Positives = 174/189 (92%), Gaps = 3/189 (1%)

Query: 1   MAEKPQPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVS 60
           MAEKPQPVRVLYCS+CSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEA+EKEA+KVS
Sbjct: 1   MAEKPQPVRVLYCSVCSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEASEKEADKVS 60

Query: 61  GQLQLFGLSSG-GADGATSG--QTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKC 117
            QLQ  G+SSG G + A S   +TS+SKQEEVKRLPGGKIKKKE+QEV+IEKVVRNKRKC
Sbjct: 61  EQLQSVGISSGAGNETAPSAARKTSTSKQEEVKRLPGGKIKKKEKQEVIIEKVVRNKRKC 120

Query: 118 ITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWP 177
           ITIVKGLDLFGVKL DASKKLGKKFATGASVVKGPT+KEQIDVQGDISYDIVEF+TDTWP
Sbjct: 121 ITIVKGLDLFGVKLGDASKKLGKKFATGASVVKGPTDKEQIDVQGDISYDIVEFVTDTWP 180

Query: 178 AVISLSIFF 186
            V   +I+F
Sbjct: 181 DVPETAIYF 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444903|ref|XP_002281869.1| PREDICTED: translation machinery-associated protein 22 [Vitis vinifera] gi|297738660|emb|CBI27905.3| unnamed protein product [Vitis vinifera]

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 155/187 (82%), Positives = 170/187 (90%), Gaps = 1/187 (0%)

Query: 1   MAEKPQPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVS 60
           MAEKPQPVRVLYC +CSLPAEYCEFG DFEKCKPWLI+NAP+LYPDLLKEA+ KEA+KV+
Sbjct: 1   MAEKPQPVRVLYCQVCSLPAEYCEFGSDFEKCKPWLIQNAPDLYPDLLKEADSKEADKVA 60

Query: 61  GQLQLFGLSSGGADG-ATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCIT 119
            QLQ   LSSG ADG A SG  S+SKQEEVKRLPGGKIK+KE+QEVVIEK+VRNKRKCIT
Sbjct: 61  QQLQSTALSSGSADGSAPSGGASASKQEEVKRLPGGKIKRKEKQEVVIEKIVRNKRKCIT 120

Query: 120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAV 179
            VKGL+LFG+KLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI+YDIVEFIT+TWP V
Sbjct: 121 TVKGLELFGIKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIAYDIVEFITETWPDV 180

Query: 180 ISLSIFF 186
              +IFF
Sbjct: 181 PETAIFF 187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142891|ref|XP_002324767.1| predicted protein [Populus trichocarpa] gi|222866201|gb|EEF03332.1| predicted protein [Populus trichocarpa]

 Score =  311 bits (798), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 157/190 (82%), Positives = 169/190 (88%), Gaps = 4/190 (2%)

Query: 1   MAEKPQPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVS 60
           MAEKP PV+VLYC  CSLPAEYCEFG DFEKCKPWLIKNAPELYPDLLKEA+EKEA +VS
Sbjct: 1   MAEKPDPVKVLYCPTCSLPAEYCEFGSDFEKCKPWLIKNAPELYPDLLKEADEKEAGRVS 60

Query: 61  GQLQLFGLSSGGADGATS----GQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRK 116
            QL   G+SS GADG+ S    G+TSSSKQEEVKRLPGGKIKKK RQEVVIEKVVRNKRK
Sbjct: 61  EQLHSVGISSIGADGSASSVHSGETSSSKQEEVKRLPGGKIKKKVRQEVVIEKVVRNKRK 120

Query: 117 CITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 176
            ITI+KGLDLFG+KLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI+YDIVEFIT+TW
Sbjct: 121 SITIIKGLDLFGIKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIAYDIVEFITETW 180

Query: 177 PAVISLSIFF 186
           P V   +I+F
Sbjct: 181 PDVPETAIYF 190

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807241|ref|XP_002871504.1| eukaryotic translation initiation factor SUI1 family protein [Arabidopsis lyrata subsp. lyrata] gi|297317341|gb|EFH47763.1| eukaryotic translation initiation factor SUI1 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  308 bits (790), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 153/188 (81%), Positives = 172/188 (91%), Gaps = 2/188 (1%)

Query: 1   MAEKPQPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVS 60
           MAEK +PV+VLYC +CSLPAEYCEFGPDF +CKPWL++NAP+LYPDLLKEANEK A+ VS
Sbjct: 1   MAEKLEPVKVLYCGVCSLPAEYCEFGPDFARCKPWLVENAPDLYPDLLKEANEKAADNVS 60

Query: 61  GQLQLFGLSSGGADGA-TSGQTS-SSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCI 118
            +LQ  G+SSGGADGA +S QT+ +SK+EEVKRLPGGK+KKK+RQEV+IEKVVRNKRKCI
Sbjct: 61  DKLQSVGISSGGADGAPSSAQTAGTSKKEEVKRLPGGKVKKKDRQEVIIEKVVRNKRKCI 120

Query: 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPA 178
           TIVKGL+LFG+KLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI YDIVEFITDTWP 
Sbjct: 121 TIVKGLELFGIKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIIYDIVEFITDTWPD 180

Query: 179 VISLSIFF 186
           V   SIFF
Sbjct: 181 VPERSIFF 188

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22326739|ref|NP_196751.2| Translation initiation factor SUI1 family protein [Arabidopsis thaliana] gi|17381204|gb|AAL36414.1| unknown protein [Arabidopsis thaliana] gi|30793919|gb|AAP40412.1| unknown protein [Arabidopsis thaliana] gi|51969034|dbj|BAD43209.1| unknown protein [Arabidopsis thaliana] gi|51969518|dbj|BAD43451.1| unknown protein [Arabidopsis thaliana] gi|51971214|dbj|BAD44299.1| unknown protein [Arabidopsis thaliana] gi|62319631|dbj|BAD95123.1| hypothetical protein [Arabidopsis thaliana] gi|332004353|gb|AED91736.1| Translation initiation factor SUI1 family protein [Arabidopsis thaliana]

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 153/188 (81%), Positives = 171/188 (90%), Gaps = 2/188 (1%)

Query: 1   MAEKPQPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVS 60
           MAEK +PV+VLYC +CSLPAEYCEFGPDF +CKPWL++NAP+LYPDLLKEANEK A+ VS
Sbjct: 1   MAEKLEPVKVLYCGVCSLPAEYCEFGPDFARCKPWLVENAPDLYPDLLKEANEKAADNVS 60

Query: 61  GQLQLFGLSSGGADGA-TSGQTS-SSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCI 118
            +LQ  G+SSGGADGA +S QT  +SK+EEVKRLPGGK+KKK+RQEV+IEKVVRNKRKCI
Sbjct: 61  DKLQSVGISSGGADGAPSSAQTGGTSKKEEVKRLPGGKVKKKDRQEVIIEKVVRNKRKCI 120

Query: 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPA 178
           TIVKGL+LFG+KLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI YDIVEFITDTWP 
Sbjct: 121 TIVKGLELFGIKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIIYDIVEFITDTWPD 180

Query: 179 VISLSIFF 186
           V   SIFF
Sbjct: 181 VPERSIFF 188

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452514|ref|XP_004144004.1| PREDICTED: translation machinery-associated protein 22-like [Cucumis sativus] gi|449489890|ref|XP_004158450.1| PREDICTED: translation machinery-associated protein 22-like [Cucumis sativus]

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 152/186 (81%), Positives = 164/186 (88%), Gaps = 3/186 (1%)

Query: 1   MAEKPQPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVS 60
           MAEKPQPVRVLYC +CSLPAEYCEFGPDFEKCKPWLI+NAP+LYPDLLKEAN KEA +VS
Sbjct: 1   MAEKPQPVRVLYCPVCSLPAEYCEFGPDFEKCKPWLIQNAPDLYPDLLKEANAKEAGEVS 60

Query: 61  GQLQLFGLSSGGADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITI 120
            QLQ   +SS   DGA S   S  KQEEVKRLPGGKIKKK++QEV+IEKV RNKRKCIT 
Sbjct: 61  NQLQSTSISSAAGDGAAS---SGPKQEEVKRLPGGKIKKKDKQEVIIEKVTRNKRKCITT 117

Query: 121 VKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVI 180
           VKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI+YDIV+FIT+TWP V 
Sbjct: 118 VKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIAYDIVDFITETWPDVP 177

Query: 181 SLSIFF 186
             +IFF
Sbjct: 178 ETAIFF 183

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|397787596|gb|AFO66502.1| putative eukaryotic translation initiation factor SUI1 family protein [Brassica napus]

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 149/188 (79%), Positives = 166/188 (88%), Gaps = 2/188 (1%)

Query: 1   MAEKPQPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVS 60
           MAEK +P +VLYC +CSLPAEYCEFGPDF +CKPWL++NAP+LYPDLLKEANEK A+ VS
Sbjct: 1   MAEKLEPAKVLYCGVCSLPAEYCEFGPDFGRCKPWLVENAPDLYPDLLKEANEKAADNVS 60

Query: 61  GQLQLFGLSSGGADGATSGQTS--SSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCI 118
            +LQ  G+SSGGADGA S   S  +SK+EE KRLPGGK+KKK+RQEV+IEKVVRNKRK I
Sbjct: 61  DKLQSVGISSGGADGAPSSSQSGGTSKKEEAKRLPGGKLKKKDRQEVIIEKVVRNKRKSI 120

Query: 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPA 178
           TIVKGL+LFG+KLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI YDIVEFITDTWP 
Sbjct: 121 TIVKGLELFGIKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIIYDIVEFITDTWPD 180

Query: 179 VISLSIFF 186
           V   SIFF
Sbjct: 181 VPERSIFF 188

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499658|gb|AFK37895.1| unknown [Lotus japonicus]

 Score =  299 bits (765), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 149/186 (80%), Positives = 163/186 (87%), Gaps = 3/186 (1%)

Query: 1   MAEKPQPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVS 60
           MAEKPQPVRV YC +CSLP EYCEFG DFEKCKPWLI+NAP +YPDL+ EAN K+A+KV+
Sbjct: 1   MAEKPQPVRVQYCQVCSLPPEYCEFGSDFEKCKPWLIQNAPHVYPDLVNEANAKDADKVA 60

Query: 61  GQLQLFGLSSGGADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITI 120
            +LQ  GLSSG  DGA S   S+ KQEEVKRLPGGKIKKK++QEVVIEKVVRNKRK IT 
Sbjct: 61  DKLQSTGLSSGAGDGAAS---SAPKQEEVKRLPGGKIKKKDKQEVVIEKVVRNKRKSITT 117

Query: 121 VKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVI 180
           VKGL+LFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIS+DIVEFITDTWP V 
Sbjct: 118 VKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISFDIVEFITDTWPDVP 177

Query: 181 SLSIFF 186
             +IFF
Sbjct: 178 ESAIFF 183

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
TAIR|locus:2143079	198	AT5G11900 [Arabidopsis thalian	0.889	0.939	0.734	2.6e-70
ZFIN|ZDB-GENE-040718-450	208	denr "density-regulated protei	0.822	0.826	0.359	1.8e-25
POMBASE|SPBC16C6.05	190	SPBC16C6.05 "mitochondrial tra	0.799	0.878	0.371	2.2e-25
UNIPROTKB|A4QVI3	201	TMA22 "Translation machinery-a	0.794	0.825	0.352	1.2e-24
UNIPROTKB|F1NE92	201	DENR "Density-regulated protei	0.765	0.796	0.375	6.8e-24
UNIPROTKB|Q5ZJ39	198	DENR "Density-regulated protei	0.765	0.808	0.375	6.8e-24
UNIPROTKB|Q2HJ47	198	DENR "Density-regulated protei	0.765	0.808	0.370	1.1e-23
UNIPROTKB|J9NSD0	275	DENR "Uncharacterized protein"	0.765	0.581	0.370	1.1e-23
UNIPROTKB|O43583	198	DENR "Density-regulated protei	0.765	0.808	0.370	1.1e-23
MGI|MGI:1915434	198	Denr "density-regulated protei	0.765	0.808	0.364	4.8e-23

TAIR|locus:2143079 AT5G11900 [Arabidopsis thaliana (taxid:3702)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 138/188 (73%), Positives = 153/188 (81%)

Query:     1 MAEKPQPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVX 60
             MAEK +PV+VLYC +CSLPAEYCEFGPDF +CKPWL++NAP+LYPDLL          V 
Sbjct:     1 MAEKLEPVKVLYCGVCSLPAEYCEFGPDFARCKPWLVENAPDLYPDLLKEANEKAADNVS 60

Query:    61 XXXXXXXXXXXXADGA-TSGQTS-SSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCI 118
                         ADGA +S QT  +SK+EEVKRLPGGK+KKK+RQEV+IEKVVRNKRKCI
Sbjct:    61 DKLQSVGISSGGADGAPSSAQTGGTSKKEEVKRLPGGKVKKKDRQEVIIEKVVRNKRKCI 120

Query:   119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPA 178
             TIVKGL+LFG+KLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI YDIVEFITDTWP 
Sbjct:   121 TIVKGLELFGIKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIIYDIVEFITDTWPD 180

Query:   179 VISLSIFF 186
             V   SIFF
Sbjct:   181 VPERSIFF 188

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006413 "translational initiation" evidence=IEA;ISS

ZFIN|ZDB-GENE-040718-450 denr "density-regulated protein" [Danio rerio (taxid:7955)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 65/181 (35%), Positives = 100/181 (55%)

Query:     7 PVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXX 66
             P++VLYC +CSLPAEYCE+ P+  KCK WL KN P+++  L                   
Sbjct:    26 PLKVLYCGVCSLPAEYCEYMPEPAKCKQWLEKNFPDVFAKLTLGTAPKQESKGGGGGEDG 85

Query:    67 XXXXXXADGATSGQTSSSKQEEVKRLPGGKIKKKER---QEVVIEKVVRNKRKCITIVKG 123
                    +   +G+    K++  KR   G+IK+K++   Q+V I K+ R K+K +T V G
Sbjct:    86 GGGRGRGEAPPAGEEEEKKKQ--KRGGRGQIKQKKKTVPQKVTIAKIPRAKKKYVTRVCG 143

Query:   124 LDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLS 183
             L  F ++L +A +   +KF+ GASV    T +++I +QGD + DI++ I + WP V   S
Sbjct:   144 LATFDIELKEAQRFFAQKFSCGASV----TAEDEIIIQGDFTDDIIDVIQEKWPEVDDDS 199

Query:   184 I 184
             I
Sbjct:   200 I 200

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

POMBASE|SPBC16C6.05 SPBC16C6.05 "mitochondrial translation initiation factor (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 65/175 (37%), Positives = 95/175 (54%)

Query:     5 PQPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXX 64
             P+   VLYC +C+LP EYCEF    +KCK WL  + P++Y  L           +     
Sbjct:     7 PKLKSVLYCDVCTLPVEYCEFEGTLKKCKEWLKSSHPDVYDKLYGEQD------LSKDLE 60

Query:    65 XXXXXXXXADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGL 124
                      D     Q +   +EE KR+   + K+    +V+I+ + R KRK +T V+GL
Sbjct:    61 NTLNVSGTKDSNAEEQPAKLTKEE-KRVEREEAKRMA-SKVLIKTIERTKRKRVTTVQGL 118

Query:   125 DLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAV 179
             D FG++   A+K L  KFATGASV K   +K++I VQGD++YDI +FI + +  V
Sbjct:   119 DAFGIETKKAAKMLANKFATGASVTKTADKKDEIVVQGDLNYDIFDFILEKFKEV 173

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005840 "ribosome" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0032543 "mitochondrial translation" evidence=NAS

UNIPROTKB|A4QVI3 TMA22 "Translation machinery-associated protein 22" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 62/176 (35%), Positives = 91/176 (51%)

Query:     4 KPQPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXX 63
             +PQ   V YC +CSLP EYCE+G   +KC+ WL +N  E+Y  +                
Sbjct:    13 EPQGREVTYCGVCSLPPEYCEYGGTVKKCQDWLQRNNQEMYDRIWSPEALQAATAALSVE 72

Query:    64 XXXXXXXXXADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKG 123
                         A   + + +K  +       K+KK     V ++++ RNKRK +T V G
Sbjct:    73 AQQRAEKDAKKKAAKAEAAEAKHAD-------KLKKSV---VTVKRIERNKRKYVTSVSG 122

Query:   124 LDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAV 179
             L+ FG++L   +K  GKKFATG+SV K  +  E+I VQGD+S +I EFI + +  V
Sbjct:   123 LESFGLELKKVAKDFGKKFATGSSVTKVASGGEEIVVQGDVSDEIKEFIVEKYKDV 178

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1NE92 DENR "Density-regulated protein" [Gallus gallus (taxid:9031)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 68/181 (37%), Positives = 99/181 (54%)

Query:     7 PVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXX 66
             P+RVLYC +CSLP EYCE+ PD  KC+ WL KN P+ +  L           V       
Sbjct:    31 PLRVLYCGVCSLPTEYCEYMPDVTKCRQWLEKNFPDEFAKLTVENSPKQEAGVGE----- 85

Query:    67 XXXXXXADGATSGQTSSSKQEEVKRLPGGKIKKKER---QEVVIEKVVRNKRKCITIVKG 123
                     G T+G+    K++  KR   G+IK+K++   Q+V I K+ R K+K +T V G
Sbjct:    86 ------GQG-TAGEEEEKKKQ--KRGGRGQIKQKKKTVPQKVTIAKIPRAKKKYVTRVCG 136

Query:   124 LDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLS 183
             L  F + L +A +   +KF+ GASV    T +++I +QGD + DI++ I + WP V   S
Sbjct:   137 LATFEIDLKEAQRFFAQKFSCGASV----TGEDEIIIQGDFTDDIIDVIQEKWPEVDDDS 192

Query:   184 I 184
             I
Sbjct:   193 I 193

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|Q5ZJ39 DENR "Density-regulated protein" [Gallus gallus (taxid:9031)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 68/181 (37%), Positives = 99/181 (54%)

Query:     7 PVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXX 66
             P+RVLYC +CSLP EYCE+ PD  KC+ WL KN P+ +  L           V       
Sbjct:    28 PLRVLYCGVCSLPTEYCEYMPDVTKCRQWLEKNFPDEFAKLTVENSPKQEAGVGE----- 82

Query:    67 XXXXXXADGATSGQTSSSKQEEVKRLPGGKIKKKER---QEVVIEKVVRNKRKCITIVKG 123
                     G T+G+    K++  KR   G+IK+K++   Q+V I K+ R K+K +T V G
Sbjct:    83 ------GQG-TAGEEEEKKKQ--KRGGRGQIKQKKKTVPQKVTIAKIPRAKKKYVTRVCG 133

Query:   124 LDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLS 183
             L  F + L +A +   +KF+ GASV    T +++I +QGD + DI++ I + WP V   S
Sbjct:   134 LATFEIDLKEAQRFFAQKFSCGASV----TGEDEIIIQGDFTDDIIDVIQEKWPEVDDDS 189

Query:   184 I 184
             I
Sbjct:   190 I 190

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|Q2HJ47 DENR "Density-regulated protein" [Bos taurus (taxid:9913)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 67/181 (37%), Positives = 98/181 (54%)

Query:     7 PVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXX 66
             P+RVLYC +CSLP EYCE+ PD  KC+ WL KN P  +  L           +       
Sbjct:    28 PLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPNEFAKLTVENSPKQEAGISE----- 82

Query:    67 XXXXXXADGATSGQTSSSKQEEVKRLPGGKIKKKER---QEVVIEKVVRNKRKCITIVKG 123
                     G T+G+    K++  KR   G+IK+K++   Q+V I K+ R K+K +T V G
Sbjct:    83 ------GQG-TAGEEEEKKKQ--KRGGRGQIKQKKKTVPQKVTIAKIPRAKKKYVTRVCG 133

Query:   124 LDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLS 183
             L  F + L +A +   +KF+ GASV    T +++I +QGD + DI++ I + WP V   S
Sbjct:   134 LATFEIDLKEAQRFFAQKFSCGASV----TGEDEIIIQGDFTDDIIDVIQEKWPEVDDDS 189

Query:   184 I 184
             I
Sbjct:   190 I 190

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|J9NSD0 DENR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 67/181 (37%), Positives = 98/181 (54%)

Query:     7 PVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXX 66
             P+RVLYC +CSLP EYCE+ PD  KC+ WL KN P  +  L           +       
Sbjct:   105 PLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPNEFAKLTVENSPKQEAGISE----- 159

Query:    67 XXXXXXADGATSGQTSSSKQEEVKRLPGGKIKKKER---QEVVIEKVVRNKRKCITIVKG 123
                     G T+G+    K++  KR   G+IK+K++   Q+V I K+ R K+K +T V G
Sbjct:   160 ------GQG-TAGEEEEKKKQ--KRGGRGQIKQKKKTVPQKVTIAKIPRAKKKYVTRVCG 210

Query:   124 LDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLS 183
             L  F + L +A +   +KF+ GASV    T +++I +QGD + DI++ I + WP V   S
Sbjct:   211 LATFEIDLKEAQRFFAQKFSCGASV----TGEDEIIIQGDFTDDIIDVIQEKWPEVDDDS 266

Query:   184 I 184
             I
Sbjct:   267 I 267

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|O43583 DENR "Density-regulated protein" [Homo sapiens (taxid:9606)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 67/181 (37%), Positives = 98/181 (54%)

Query:     7 PVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXX 66
             P+RVLYC +CSLP EYCE+ PD  KC+ WL KN P  +  L           +       
Sbjct:    28 PLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPNEFAKLTVENSPKQEAGISE----- 82

Query:    67 XXXXXXADGATSGQTSSSKQEEVKRLPGGKIKKKER---QEVVIEKVVRNKRKCITIVKG 123
                     G T+G+    K++  KR   G+IK+K++   Q+V I K+ R K+K +T V G
Sbjct:    83 ------GQG-TAGEEEEKKKQ--KRGGRGQIKQKKKTVPQKVTIAKIPRAKKKYVTRVCG 133

Query:   124 LDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLS 183
             L  F + L +A +   +KF+ GASV    T +++I +QGD + DI++ I + WP V   S
Sbjct:   134 LATFEIDLKEAQRFFAQKFSCGASV----TGEDEIIIQGDFTDDIIDVIQEKWPEVDDDS 189

Query:   184 I 184
             I
Sbjct:   190 I 190

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1915434 Denr "density-regulated protein" [Mus musculus (taxid:10090)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 66/181 (36%), Positives = 94/181 (51%)

Query:     7 PVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXX 66
             P+RVLYC +CSLP EYCE+ PD  KC+ WL KN P  +  L           +       
Sbjct:    28 PLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPNEFAKLTVENSPKQETGITE----- 82

Query:    67 XXXXXXADGATSGQTSSSKQEEVKRLPGGKIKKKER---QEVVIEKVVRNKRKCITIVKG 123
                     G    +    KQ   KR   G+IK+K++   Q+V I K+ R K+K +T V G
Sbjct:    83 ------GQGPVGEEEEKKKQ---KRGGRGQIKQKKKTVPQKVTIAKIPRAKKKYVTRVCG 133

Query:   124 LDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLS 183
             L  F + L +A +   +KF+ GASV    T +++I +QGD + DI++ I + WP V   S
Sbjct:   134 LATFEIDLKEAQRFFAQKFSCGASV----TGEDEIIIQGDFTDDIIDVIQEKWPEVDDDS 189

Query:   184 I 184
             I
Sbjct:   190 I 190

GO:0003674 "molecular_function" evidence=ND

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006413 "translational initiation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6DH65	DENR_DANRE	No assigned EC number	0.3756	0.8229	0.8269	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00032202001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (197 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00022683001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (181 aa)				•	•		•		0.674

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	209
TIGR01159	173	TIGR01159, DRP1, density-regulated protein DRP1	8e-65
cd11607	86	cd11607, DENR_C, C-terminal domain of DENR and rel	1e-37
pfam01253	74	pfam01253, SUI1, Translation initiation factor SUI	8e-18
COG0023	104	COG0023, SUI1, Translation initiation factor 1 (eI	3e-13
cd11608	85	cd11608, eIF2D_C, C-terminal domain of eIF2D and r	7e-08
cd11566	84	cd11566, eIF1_SUI1, Eukaryotic initiation factor 1	6e-06
PRK00939	99	PRK00939, PRK00939, translation initiation factor	7e-06
cd00474	78	cd00474, eIF1_SUI1_like, Eukaryotic initiation fac	1e-05
TIGR01158	101	TIGR01158, SUI1_rel, translation initation factor	7e-05
TIGR01160	110	TIGR01160, SUI1_MOF2, translation initiation facto	2e-04

>gnl|CDD|233294 TIGR01159, DRP1, density-regulated protein DRP1

 Score =  197 bits (502), Expect = 8e-65
 Identities = 76/183 (41%), Positives = 100/183 (54%), Gaps = 14/183 (7%)

Query: 7   PVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKE---ANEKEAEKVSGQL 63
           P+RVLYC +CSLP EYCEF  D ++CK WL +NAP+LY  L        E EA  +    
Sbjct: 1   PLRVLYCGVCSLPPEYCEFSGDLKRCKVWLSENAPDLYAKLYGTDSPTAEAEAVTIGEAQ 60

Query: 64  QLFGLSSGGADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKG 123
           +  G       G    Q +           GGK KKK  Q+V I++  R KRK +T++KG
Sbjct: 61  EEKGEKD--LLGIQKAQEAR---------EGGKKKKKLPQKVTIKREPRTKRKFVTVIKG 109

Query: 124 LDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLS 183
           L+ F + L  ASK   +KFATG SV K  T KE+I +QGD+  DI ++I + WP V    
Sbjct: 110 LETFDIDLKKASKTFAQKFATGCSVSKSVTGKEEIVIQGDVMDDIEDYIHEKWPEVGDKD 169

Query: 184 IFF 186
           I  
Sbjct: 170 IKD 172

This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs. Length = 173

>gnl|CDD|211320 cd11607, DENR_C, C-terminal domain of DENR and related proteins

 Score =  125 bits (316), Expect = 1e-37
 Identities = 38/84 (45%), Positives = 55/84 (65%)

Query: 103 QEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQG 162
            +V I+++ RNKRK +T V GL+ FG+ L  A+K   KKFA GASV KG   K++I +QG
Sbjct: 1   SKVTIKRISRNKRKFVTTVTGLETFGIDLKKAAKLFAKKFACGASVTKGAEGKDEIVIQG 60

Query: 163 DISYDIVEFITDTWPAVISLSIFF 186
           D++ DIV+ I + WP +   +I  
Sbjct: 61  DVTDDIVDLILEKWPEIDEDNIEI 84

DENR (density regulated protein), together with MCT-1 (multiple copies T cell malignancies), has been shown to have similar function as eIF2D translation initiation factor (also known as ligatin), which is involved in the recruitment and delivery of aminoacyl-tRNAs to the P-site of the eukaryotic ribosome in a GTP-independent manner. Length = 86

>gnl|CDD|216391 pfam01253, SUI1, Translation initiation factor SUI1

 Score = 74.1 bits (183), Expect = 8e-18
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 4/78 (5%)

Query: 99  KKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQI 158
           KKE Q++ I +  R   K +T+V GL+LFG+ L   +K+L KKF  G +V  G    E+I
Sbjct: 1   KKEDQKIRIRREKRRGGKTVTVVTGLELFGIDLKKLAKELKKKFGCGGTVKDG----EEI 56

Query: 159 DVQGDISYDIVEFITDTW 176
           ++QGD    + + +    
Sbjct: 57  EIQGDHRDKVKDLLEKEG 74

Length = 74

>gnl|CDD|223102 COG0023, SUI1, Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]

 Score = 63.1 bits (154), Expect = 3e-13
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 90  KRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVV 149
           K L   ++ K+  Q V I +  R K K +TI++GLDL  + L   +K+L KK A G +V 
Sbjct: 14  KELTCEEVAKEGDQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTVK 73

Query: 150 KGPTEKEQIDVQGDISYDIVEFITD 174
            G     +I++QGD    + E +  
Sbjct: 74  DG-----EIEIQGDHRDKVKELLIK 93

Length = 104

>gnl|CDD|211321 cd11608, eIF2D_C, C-terminal domain of eIF2D and related proteins

 Score = 47.9 bits (115), Expect = 7e-08
 Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 4/75 (5%)

Query: 104 EVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKE--QIDVQ 161
           ++  E+   NK+  +T++ GL+ FG+   + +K+L KK A   SV   P +K+  ++ VQ
Sbjct: 3   DITTERRQGNKK--VTLISGLESFGIDPEEFAKELQKKCAASTSVSPLPGKKKGVEVQVQ 60

Query: 162 GDISYDIVEFITDTW 176
           G+    + + +T+ +
Sbjct: 61  GNQVKFVAKLLTEKY 75

eIF2D translation initiation factor (also known as ligatin) is involved in the recruitment and delivery of aminoacyl-tRNAs to the P-site of the eukaryotic ribosome in a GTP-independent manner. Length = 85

>gnl|CDD|211318 cd11566, eIF1_SUI1, Eukaryotic initiation factor 1

 Score = 42.9 bits (102), Expect = 6e-06
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 112 RNKRKCITIVKGL-DLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVE 170
           RN RK +T V+GL + F +K     K   K+FA   +VV+ P   E I +QGD   +I E
Sbjct: 10  RNGRKTLTTVQGLPEEFDLKK--ILKAFKKEFACNGTVVEDPEYGEVIQLQGDQRKNIKE 67

Query: 171 FITD 174
           F+ +
Sbjct: 68  FLLE 71

eIF1/SUI1 (eukaryotic initiation factor 1) plays an important role in accurate initiator codon recognition during translation initiation. eIF1 interacts with 18S rRNA in the 40S ribosomal subunit during eukaryotic translation initiation. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown. Length = 84

>gnl|CDD|179173 PRK00939, PRK00939, translation initiation factor Sui1; Reviewed

 Score = 43.0 bits (102), Expect = 7e-06
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 5/64 (7%)

Query: 100 KERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQID 159
           KE+Q + I+   R   K +TI++G+D   + L + +KKL  K A G +V  G     +I+
Sbjct: 21  KEQQRIKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTVKDG-----RIE 75

Query: 160 VQGD 163
           +QGD
Sbjct: 76  LQGD 79

Length = 99

>gnl|CDD|211317 cd00474, eIF1_SUI1_like, Eukaryotic initiation factor 1 and related proteins

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 105 VVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI 164
           + I+   R+  K +T V+GL  + + L   + +L KK   G SV     EK +I++QGD 
Sbjct: 2   IHIKVEQRSGGKKVTKVEGLPAY-IDLRKLADELKKKLGCGGSVEG---EKMEIEIQGDH 57

Query: 165 SYDIVEFITDTWPAVISLSI 184
           +  I+  + +       + +
Sbjct: 58  TDQIIVALEEKGIDKDWVEL 77

Members of the eIF1/SUI1 (eukaryotic initiation factor 1) family are found in eukaryotes, archaea, and some bacteria; eukaryotic members are understood to play an important role in accurate initiator codon recognition during translation initiation. eIF1 interacts with 18S rRNA in the 40S ribosomal subunit during eukaryotic translation initiation. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown. The function of non-eukaryotic family members is also unclear. Length = 78

>gnl|CDD|130226 TIGR01158, SUI1_rel, translation initation factor SUI1, putative, prokaryotic

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 97  IKKKERQEVVIEKVVRN-KRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEK 155
            K KE Q V I++  R  K K +TI++GLDL  + L + +K+L  K   G +V  G    
Sbjct: 18  AKPKEDQVVRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTVKDG---- 73

Query: 156 EQIDVQGD 163
             I++QGD
Sbjct: 74  -VIEIQGD 80

This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met [Protein synthesis, Translation factors]. Length = 101

>gnl|CDD|130228 TIGR01160, SUI1_MOF2, translation initiation factor SUI1, eukaryotic

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 112 RNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEF 171
           RN RK +T V+GL      L    K L K+FA   +V++ P   E I +QGD   ++ EF
Sbjct: 35  RNGRKTLTTVQGLPK-EYDLKKIVKALKKEFACNGTVIEDPEMGEVIQLQGDQRKNVCEF 93

Query: 172 I 172
           +
Sbjct: 94  L 94

Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation [Protein synthesis, Translation factors]. Length = 110

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
TIGR01159	173	DRP1 density-regulated protein DRP1. This protein	100.0
KOG3239	193	consensus Density-regulated protein related to tra	100.0
PF01253	83	SUI1: Translation initiation factor SUI1; InterPro	99.93
COG0023	104	SUI1 Translation initiation factor 1 (eIF-1/SUI1)	99.9
cd00474	77	SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation fac	99.88
TIGR01160	110	SUI1_MOF2 translation initiation factor SUI1, euka	99.87
PRK00939	99	translation initiation factor Sui1; Reviewed	99.87
TIGR01158	101	SUI1_rel translation initation factor SUI1, putati	99.82
KOG2522	560	consensus Filamentous baseplate protein Ligatin, c	99.76
KOG1770	112	consensus Translation initiation factor 1 (eIF-1/S	99.74
PRK06824	118	translation initiation factor Sui1; Validated	99.72
PRK07451	115	translation initiation factor Sui1; Validated	99.71
PRK09019	108	translation initiation factor Sui1; Validated	99.71
PF05046	87	Img2: Mitochondrial large subunit ribosomal protei	97.45
PRK03988	138	translation initiation factor IF-2 subunit beta; V	92.87
TIGR00311	133	aIF-2beta translation initiation factor aIF-2, bet	92.8
smart00653	110	eIF2B_5 domain present in translation initiation f	92.33
PRK14434	92	acylphosphatase; Provisional	91.52
PRK14444	92	acylphosphatase; Provisional	90.71
PRK14451	89	acylphosphatase; Provisional	90.57
KOG4034	169	consensus Uncharacterized conserved protein NOF (N	90.51
PRK14440	90	acylphosphatase; Provisional	90.35
PRK14449	90	acylphosphatase; Provisional	90.3
PRK14437	109	acylphosphatase; Provisional	89.66
PRK14425	94	acylphosphatase; Provisional	89.6
PRK14436	91	acylphosphatase; Provisional	89.48
PF01873	125	eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro:	88.92
PRK12336	201	translation initiation factor IF-2 subunit beta; P	88.6
PRK14422	93	acylphosphatase; Provisional	88.52
PRK14438	91	acylphosphatase; Provisional	88.41
PRK14429	90	acylphosphatase; Provisional	88.4
PRK14446	88	acylphosphatase; Provisional	88.39
PRK14443	93	acylphosphatase; Provisional	88.18
PRK14428	97	acylphosphatase; Provisional	88.03
PRK14445	91	acylphosphatase; Provisional	87.88
PRK14433	87	acylphosphatase; Provisional	87.86
PRK14452	107	acylphosphatase; Provisional	87.78
PRK14442	91	acylphosphatase; Provisional	87.67
PRK14420	91	acylphosphatase; Provisional	87.56
PRK14427	94	acylphosphatase; Provisional	87.42
PRK14435	90	acylphosphatase; Provisional	87.4
PRK14423	92	acylphosphatase; Provisional	86.86
PRK14426	92	acylphosphatase; Provisional	86.42
PRK14421	99	acylphosphatase; Provisional	85.85
PRK14424	94	acylphosphatase; Provisional	85.76
PF00708	91	Acylphosphatase: Acylphosphatase; InterPro: IPR001	85.67
PRK14447	95	acylphosphatase; Provisional	85.47
PRK14450	91	acylphosphatase; Provisional	85.4
PRK14432	93	acylphosphatase; Provisional	84.69
PRK14448	90	acylphosphatase; Provisional	84.14
PRK14439	163	acylphosphatase; Provisional	83.67
TIGR02174	72	CXXU_selWTH selT/selW/selH selenoprotein domain. T	83.33
PRK14441	93	acylphosphatase; Provisional	83.09

>TIGR01159 DRP1 density-regulated protein DRP1

Probab=100.00  E-value=5e-59  Score=389.23  Aligned_cols=172  Identities=41%  Similarity=0.716  Sum_probs=144.3

Q ss_pred             ceeEEEcCCCCCCccccccCCChhhhHHHHHHhCCCchhHHHhhhhhhHHHHhhhhhhhccCCCCCCCCCCCCCCC-cch
Q 028409            7 PVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVSGQLQLFGLSSGGADGATSGQTS-SSK   85 (209)
Q Consensus         7 p~~V~YC~vCs~P~EYCEfg~~~~kCk~WL~~n~p~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~kk   85 (209)
                      |++|+||||||||+|||||||++++|++||++||||||++||.+.      .+++.+..+++|...+..+..   + .++
T Consensus         1 p~~V~YCgvCs~P~EyCEf~~~~~kCk~WL~~n~p~l~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~k~   71 (173)
T TIGR01159         1 PLRVLYCGVCSLPPEYCEFSGDLKRCKVWLSENAPDLYAKLYGTD------SPTAEAEAVTIGEAQEEKGEK---DLLGI   71 (173)
T ss_pred             CceeEECCCCCCchHHhcCCCCHHHHHHHHHHhChHHHHHHhhcc------cchhccccchhhHHHHhhhhh---hhhHH
Confidence            789999999999999999999999999999999999999999842      222222112333222221111   2 344


Q ss_pred             HHHhhhCCCCccccCCCCcEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCch
Q 028409           86 QEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIS  165 (209)
Q Consensus        86 ~~k~~~~~~~~~kK~~~~~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~  165 (209)
                      +.+..+++.++.+|+.+++|+|++++|+|||+||+|+||+.|++||++|||.|+++||||+||++++.++++|+|||||+
T Consensus        72 ~~~~~~~~~~~~kK~~~~~V~I~~~~R~krK~VT~V~GLe~f~idlk~laK~lkkkfacG~SV~k~~~~~~eI~IQGD~~  151 (173)
T TIGR01159        72 QKAQEAREGGKKKKKLPQKVTIKREPRTKRKFVTVIKGLETFDIDLKKASKTFAQKFATGCSVSKSVTGKEEIVIQGDVM  151 (173)
T ss_pred             HhhhhhhhhhhhccCCCCeEEEEEEecCCCceEEEEeCCcCCCcCHHHHHHHHHHHhCCCCccccCCCCCCEEEecCCHH
Confidence            44444566677889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhCCCCCCCcEEEe
Q 028409          166 YDIVEFITDTWPAVISLSIFFS  187 (209)
Q Consensus       166 ~~i~~~L~~~~~gIp~~~I~~~  187 (209)
                      ++|.++|.++|++||+++|+++
T Consensus       152 ~~v~e~L~~~~~~v~e~~I~~~  173 (173)
T TIGR01159       152 DDIEDYIHEKWPEVGDKDIKDL  173 (173)
T ss_pred             HHHHHHHHHHcCCCCHHHeeeC
Confidence            9999999999999999999874

This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.

>KOG3239 consensus Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1) [General function prediction only]

Probab=100.00  E-value=5.5e-56  Score=368.78  Aligned_cols=174  Identities=43%  Similarity=0.782  Sum_probs=141.6

Q ss_pred             CCCCCCcee--EEEcCCCCCCccccccCCChhhhHHHHHHhCCCchhHHHhhhhhhHHHHhhhhhhhccCCC-CCCCCCC
Q 028409            1 MAEKPQPVR--VLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVSGQLQLFGLSS-GGADGAT   77 (209)
Q Consensus         1 m~~~~~p~~--V~YC~vCs~P~EYCEfg~~~~kCk~WL~~n~p~l~~~l~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~   77 (209)
                      ||+.+.|+.  |+|||+||||+|||||+|++++|++||+.||||||++||.+.+.+.+      .   ..|. .+.+|++
T Consensus         1 ~a~k~~P~~~~vlYCGvCSlP~EYCEf~~~~~kCk~WL~~n~pdly~kL~~e~~~~qe------~---~~s~~~~a~G~~   71 (193)
T KOG3239|consen    1 MADKLGPRKGSVLYCGVCSLPPEYCEFSGDLKKCKEWLEENHPDLYAKLYGEDDPKQE------V---EASTAEGADGEA   71 (193)
T ss_pred             CCccCCCcccceEEeeccCCCHHHHHccccHHHHHHHHHhcChhHHHhhhcccChhhh------h---cccccccccCCc
Confidence            888888888  99999999999999999999999999999999999999986432211      1   1111 1222222


Q ss_pred             CCCCCcchH-------HHhhhCCCCccccCCCCcEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeee
Q 028409           78 SGQTSSSKQ-------EEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVK  150 (209)
Q Consensus        78 ~~~~~~kk~-------~k~~~~~~~~~kK~~~~~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k  150 (209)
                      .   +.+++       .+++.+.+++.+|+.+++|.|.++.|++||+||+|+||+.|+|||+.+||.|+++||||+||++
T Consensus        72 ~---e~k~ek~~gk~~k~~~~~~~~e~~k~~pqkV~I~r~~R~KrK~VT~V~GL~~FdIdlk~aaK~fa~KFAtGaSVtk  148 (193)
T KOG3239|consen   72 D---EKKKEKRGGKGQKKQENRSQREKKKRLPQKVIIKREARTKRKSVTVVKGLETFDIDLKKAAKFFAQKFATGASVTK  148 (193)
T ss_pred             h---hhHHHhccccchhhhhhHHHHHHhccCCceeEeeecccCCceeEEEEechhhccccHHHHHHHHHHhhccCccccC
Confidence            1   11111       1122223345567789999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEE
Q 028409          151 GPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFF  186 (209)
Q Consensus       151 ~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~  186 (209)
                      ++.+.+||+||||+.++|.+||.++|+.+|++++.+
T Consensus       149 ~a~kkdEIvIQGDv~dDi~d~I~ekw~ev~ed~~~I  184 (193)
T KOG3239|consen  149 NAEKKDEIVIQGDVKDDIFDFIPEKWPEVPEDDVKI  184 (193)
T ss_pred             CCCccceEEEeccchHHHHHHHHHhcccCCccccee
Confidence            999999999999999999999999999999996444

>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []

Probab=99.93  E-value=1.4e-25  Score=166.53  Aligned_cols=82  Identities=40%  Similarity=0.632  Sum_probs=70.9

Q ss_pred             cCCCCcEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCC
Q 028409           99 KKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPA  178 (209)
Q Consensus        99 K~~~~~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~g  178 (209)
                      |+..++|+|++++|+|||+||+|+||+.|++|+++||+.|+++||||+||+++++++.+|+|||||+++|.++|.++| +
T Consensus         1 k~~~~~I~I~~e~r~~~K~vT~V~gl~~~~~d~~~lak~lkk~~ac~~sv~~~~~k~~~I~iQGd~~~~i~~~L~~~~-~   79 (83)
T PF01253_consen    1 KKEPPKIHIRVEKRRGRKFVTIVSGLELFGIDLKELAKELKKKFACGGSVTKDPGKGEEIQIQGDHRDEIKDLLVEKG-G   79 (83)
T ss_dssp             -S-TTCEEEEEEESSSSEEEEEEES--STTSHHHHHHHHHHHHHTS-EEEEE-TTTSSEEEEESS-HHHHHHHHHHHC-S
T ss_pred             CCCCCEEEEEEEeCcCCeEEEEEECCcccccCHHHHHHHHHHhccCceEEeecCCCCCEEEECCcHHHHHHHHHHHhC-C
Confidence            467899999999999999999999999999999999999999999999999988668899999999999999999998 7


Q ss_pred             CCC
Q 028409          179 VIS  181 (209)
Q Consensus       179 Ip~  181 (209)
                      +|+
T Consensus        80 ~~k   82 (83)
T PF01253_consen   80 IPK   82 (83)
T ss_dssp             SE-
T ss_pred             CCC
Confidence            775

SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.

>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=7.1e-24  Score=164.49  Aligned_cols=83  Identities=33%  Similarity=0.460  Sum_probs=77.1

Q ss_pred             cccCCCCcEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhC
Q 028409           97 IKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW  176 (209)
Q Consensus        97 ~kK~~~~~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~  176 (209)
                      ..+...+.|+|++++|++||.||+|+||+.|++||++||+.|+++||||+||     ++++|+|||||++.|.+||.+  
T Consensus        21 ~~k~~~~~V~I~~e~rr~gK~VTiI~Gld~~~~dlk~Lak~LKk~cacGGtv-----k~~~IeiQGdhr~~v~~~L~~--   93 (104)
T COG0023          21 VAKEGDQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTV-----KDGEIEIQGDHRDKVKELLIK--   93 (104)
T ss_pred             cccccCCeEEEEEEeecCCcEEEEEeCcccchhhHHHHHHHHHHHcCCCcee-----cCCEEEEeChHHHHHHHHHHH--
Confidence            3445688999999999999999999999999999999999999999999999     667999999999999999999  


Q ss_pred             CCCCCCcEEE
Q 028409          177 PAVISLSIFF  186 (209)
Q Consensus       177 ~gIp~~~I~~  186 (209)
                      .|++.++|.+
T Consensus        94 ~G~k~k~i~~  103 (104)
T COG0023          94 KGFKVKNIGI  103 (104)
T ss_pred             cCCchhhccc
Confidence            4999999875

>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation

Probab=99.88  E-value=7.6e-23  Score=151.06  Aligned_cols=76  Identities=37%  Similarity=0.415  Sum_probs=71.2

Q ss_pred             cEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCc
Q 028409          104 EVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLS  183 (209)
Q Consensus       104 ~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~  183 (209)
                      .|+|++++|++||+||+|+||+.|++|++++|+.|+++||||+||.     +++|+|||||++.|.+||.++  |+++++
T Consensus         1 ~V~I~~e~R~~~K~VT~I~Gl~~~~~dlk~l~k~lKk~~~cggtv~-----~~~I~lQGD~r~~v~~~L~~~--g~~~~~   73 (77)
T cd00474           1 VVRIRIQQRNGGKTVTTVQGLDLEYADLKKLAKELKKKCACGGTVK-----DEVIELQGDQRKKIKEFLIKM--GFAKDN   73 (77)
T ss_pred             CEEEEEEECCCCccEEEEECCCCchHhHHHHHHHHHHHcCCCcEEe-----cCEEEEeCcHHHHHHHHHHHc--CCCHHH
Confidence            3899999999999999999999999999999999999999999994     489999999999999999884  999988


Q ss_pred             EEE
Q 028409          184 IFF  186 (209)
Q Consensus       184 I~~  186 (209)
                      |.+
T Consensus        74 i~i   76 (77)
T cd00474          74 IKI   76 (77)
T ss_pred             eEe
Confidence            875

This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.

>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic

Probab=99.87  E-value=4e-22  Score=156.26  Aligned_cols=84  Identities=30%  Similarity=0.378  Sum_probs=77.6

Q ss_pred             CCCcEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCC
Q 028409          101 ERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVI  180 (209)
Q Consensus       101 ~~~~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp  180 (209)
                      ....|+|++++|+|||.||+|+||+. .+||++|||.|+++|||||||.+.++++++|+|||||+++|.+||.++. -++
T Consensus        24 ~~~~I~Iri~qR~grK~VTiI~Gl~~-~~dlk~l~K~lKkk~~cGGsVk~~~~~~~~IelQGD~re~v~~~L~~~g-~~~  101 (110)
T TIGR01160        24 TSNYIHIRIQQRNGRKTLTTVQGLPK-EYDLKKIVKALKKEFACNGTVIEDPEMGEVIQLQGDQRKNVCEFLISQG-LLK  101 (110)
T ss_pred             ccceEEEEEEEccCCccEEEEeccCC-hHHHHHHHHHHHHHhCCCceEEeCCCCCCEEEEeCcHHHHHHHHHHHcC-CCC
Confidence            35689999999999999999999994 9999999999999999999999888888999999999999999999974 579


Q ss_pred             CCcEEE
Q 028409          181 SLSIFF  186 (209)
Q Consensus       181 ~~~I~~  186 (209)
                      +++|.+
T Consensus       102 ~~~i~v  107 (110)
T TIGR01160       102 KDQIKI  107 (110)
T ss_pred             HHHeee
Confidence            998976

Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.

>PRK00939 translation initiation factor Sui1; Reviewed

Probab=99.87  E-value=3.9e-22  Score=153.72  Aligned_cols=77  Identities=29%  Similarity=0.407  Sum_probs=72.3

Q ss_pred             CCcEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCC
Q 028409          102 RQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVIS  181 (209)
Q Consensus       102 ~~~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~  181 (209)
                      .++|+|++++|+|||+||+|+||+.|++|++++|+.|+++||||+||     ++++|+|||||+++|.+||.+ + |+|.
T Consensus        23 ~~~i~I~~ekr~~gK~VTiI~Gl~~~~~~lk~l~k~lKk~~gcGgsv-----k~~~I~iQGD~r~~v~~~L~~-~-G~~~   95 (99)
T PRK00939         23 QQRIKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTV-----KDGRIELQGDHRERVKELLIK-M-GFSE   95 (99)
T ss_pred             CceEEEEEEecCCCceEEEEeCCCCcchhHHHHHHHHHHHhCCCceE-----ECCEEEEeCcHHHHHHHHHHH-c-CCCh
Confidence            37999999999999999999999999999999999999999999999     457899999999999999987 4 9999


Q ss_pred             CcEE
Q 028409          182 LSIF  185 (209)
Q Consensus       182 ~~I~  185 (209)
                      ++|+
T Consensus        96 ~~i~   99 (99)
T PRK00939         96 ENIE   99 (99)
T ss_pred             hhcC
Confidence            9885

>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic

Probab=99.82  E-value=3.3e-20  Score=143.34  Aligned_cols=77  Identities=31%  Similarity=0.463  Sum_probs=71.7

Q ss_pred             CCCcEEEEEEee-cCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCC
Q 028409          101 ERQEVVIEKVVR-NKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAV  179 (209)
Q Consensus       101 ~~~~V~I~~~~R-~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gI  179 (209)
                      +.+.|+|++++| +|+|.||+|+||+.|++|++++||.|+++||||+||     ++++|+|||||++.|.++|.+  .|+
T Consensus        22 ~~~~i~i~~e~rgr~gK~VTvV~Gl~~~~~~l~~l~k~LKk~~gcGgtv-----k~~~IeiQGD~~~~v~~~L~~--~G~   94 (101)
T TIGR01158        22 EDQVVRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTV-----KDGVIEIQGDHRDRVKDLLEK--KGF   94 (101)
T ss_pred             CCceEEEEEEEecCCCCEEEEEeCCcCchhhHHHHHHHHHHHhcCCeeE-----eCCEEEEeCcHHHHHHHHHHH--cCC
Confidence            467999999999 789999999999999999999999999999999999     568999999999999999988  389


Q ss_pred             CCCcE
Q 028409          180 ISLSI  184 (209)
Q Consensus       180 p~~~I  184 (209)
                      |.++|
T Consensus        95 ~~k~~   99 (101)
T TIGR01158        95 KVKLI   99 (101)
T ss_pred             Ceeec
Confidence            98765

This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.

>KOG2522 consensus Filamentous baseplate protein Ligatin, contains PUA domain [Translation, ribosomal structure and biogenesis]

Probab=99.76  E-value=3.6e-19  Score=166.32  Aligned_cols=97  Identities=21%  Similarity=0.257  Sum_probs=92.0

Q ss_pred             cccCCCCcEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCC-CceEEEcCCchhHHHHHHhhh
Q 028409           97 IKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTE-KEQIDVQGDISYDIVEFITDT  175 (209)
Q Consensus        97 ~kK~~~~~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~-~~eI~IQGD~~~~i~~~L~~~  175 (209)
                      +|||..++|.|.+++|.|||.||.|+|||.|+||+..+|..|+++|+||+||...|+. +-||+|||+|.+.|.++|.+.
T Consensus       461 vkKgs~ppi~i~te~RagnKkVT~V~nle~fgiDp~S~aa~Lqk~c~aSTtv~e~pg~kg~eVqvQGnqih~iadlL~k~  540 (560)
T KOG2522|consen  461 VKKGSLPPIKIITEMRAGNKKVTRVSNLEVFGIDPESLAADLQKICSASTTVSESPGFKGAEVQVQGNQIHSIADLLNKS  540 (560)
T ss_pred             eecCCCCceEEeehhhccCceEEEEccceeeccCHHHHHHHHHHHeeeeeecccCCCCCCceEEEecchhhHHHHHHHHh
Confidence            5899999999999999999999999999999999999999999999999999998884 579999999999999999999


Q ss_pred             CCCCCCCcEEEecccccch
Q 028409          176 WPAVISLSIFFSFSCVLHK  194 (209)
Q Consensus       176 ~~gIp~~~I~~~dk~~~~~  194 (209)
                      | |||.++|++.+|++=+|
T Consensus       541 y-gipkK~I~gleka~Kkk  558 (560)
T KOG2522|consen  541 Y-GIPKKWIDGLEKAKKKK  558 (560)
T ss_pred             h-CCCHHHHhHHHHhhccc
Confidence            9 99999999999987543

>KOG1770 consensus Translation initiation factor 1 (eIF-1/SUI1) [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=8.2e-18  Score=130.42  Aligned_cols=84  Identities=30%  Similarity=0.400  Sum_probs=78.6

Q ss_pred             CCCcEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCC
Q 028409          101 ERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVI  180 (209)
Q Consensus       101 ~~~~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp  180 (209)
                      ...-|||++++|+|||++|+|+||.. .+|++.+.+.|++.|||+++|++.|..++.|++|||++..|.+||...- .+.
T Consensus        26 ~~~~ihIRIQQRnGrKtlTtVQgi~~-Eyd~kril~~lKKef~CnGtvved~e~gevIQLqGDqR~nv~~fl~~~g-~~k  103 (112)
T KOG1770|consen   26 TEKYIHIRIQQRNGRKTLTTVQGIPM-EYDLKKILKSLKKEFACNGTVVEDPEYGEVIQLQGDQRKNVCQFLVQVG-LVK  103 (112)
T ss_pred             ccceEEEEEEeeCCceEEEEecCChh-hhhHHHHHHHHHHhccCCCeEecCcccCceEEeccchhhhHHHHHHHhc-ccc
Confidence            34489999999999999999999998 6899999999999999999999999999999999999999999999986 788


Q ss_pred             CCcEEE
Q 028409          181 SLSIFF  186 (209)
Q Consensus       181 ~~~I~~  186 (209)
                      +++|.+
T Consensus       104 ~~~iki  109 (112)
T KOG1770|consen  104 KDNIKI  109 (112)
T ss_pred             ccceee
Confidence            888876

>PRK06824 translation initiation factor Sui1; Validated

Probab=99.72  E-value=1.2e-17  Score=132.46  Aligned_cols=73  Identities=19%  Similarity=0.321  Sum_probs=66.0

Q ss_pred             CCcEEEEEEee-cCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCC
Q 028409          102 RQEVVIEKVVR-NKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVI  180 (209)
Q Consensus       102 ~~~V~I~~~~R-~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp  180 (209)
                      ...|+|++++| +++|.||+|+||+....|+++|||.|+++|+||+||     ++++|+|||||++.|.+||.++  |+.
T Consensus        40 ~~~vri~~~~kgr~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~gcGGtv-----kd~~IeiQGD~r~~v~~~L~~~--G~~  112 (118)
T PRK06824         40 DGIVRVRRETKGRGGKTVTVITGVPLAEDALKELAKELKRRCGTGGTL-----KDGVIEIQGDHVELLLAELLKR--GFK  112 (118)
T ss_pred             CceEEEEEEEccCCCceEEEEeCCcCCHHHHHHHHHHHHHHhcCCceE-----ecCEEEEcCcHHHHHHHHHHHC--CCe
Confidence            45899988876 588999999999999999999999999999999999     6689999999999999999884  655


Q ss_pred             C
Q 028409          181 S  181 (209)
Q Consensus       181 ~  181 (209)
                      .
T Consensus       113 ~  113 (118)
T PRK06824        113 A  113 (118)
T ss_pred             E
Confidence            4

>PRK07451 translation initiation factor Sui1; Validated

Probab=99.71  E-value=1.5e-17  Score=131.29  Aligned_cols=74  Identities=22%  Similarity=0.378  Sum_probs=63.8

Q ss_pred             CCCcEEEEEEe-ecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCC
Q 028409          101 ERQEVVIEKVV-RNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAV  179 (209)
Q Consensus       101 ~~~~V~I~~~~-R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gI  179 (209)
                      ..+.|.|++++ ++++|.||+|+||..++.|+++|||.|+++|+||+||     ++++|+|||||+++|.+||.++  |+
T Consensus        36 ~~~~irI~~~r~gR~GK~VTvV~Gl~~~~~dlk~LaK~LK~k~gcGGtv-----kd~~IelQGD~r~~v~~~L~~~--Gf  108 (115)
T PRK07451         36 QQQNLRVQATRSGRKGKTVTVITGFQHKPETLAKLLKQLKTQCGSGGTV-----KDNTIEIQGDHRQKILEILIKL--GY  108 (115)
T ss_pred             cceeEEEEEEecCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCceE-----cCCEEEEcCcHHHHHHHHHHHC--CC
Confidence            45677777543 3357999999999999999999999999999999999     7789999999999999999884  66


Q ss_pred             CC
Q 028409          180 IS  181 (209)
Q Consensus       180 p~  181 (209)
                      ..
T Consensus       109 ~~  110 (115)
T PRK07451        109 KA  110 (115)
T ss_pred             eE
Confidence            43

>PRK09019 translation initiation factor Sui1; Validated

Probab=99.71  E-value=2.2e-17  Score=129.11  Aligned_cols=73  Identities=25%  Similarity=0.354  Sum_probs=64.5

Q ss_pred             CCCcEEEEEEeec-CCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCC
Q 028409          101 ERQEVVIEKVVRN-KRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAV  179 (209)
Q Consensus       101 ~~~~V~I~~~~R~-grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gI  179 (209)
                      ....|.|++++++ ++|.||+|+||.....|+++|||.|+++||||+||     ++++|+|||||++.|.+||.++  |+
T Consensus        29 ~~~~vri~~~r~gRkGK~VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtv-----k~~~IelQGD~r~~v~~~L~~~--Gf  101 (108)
T PRK09019         29 GDGIVRIQRQTSGRKGKGVCLITGLDLDDAELKKLAAELKKKCGCGGAV-----KDGVIEIQGDKRDLLKSLLEAK--GM  101 (108)
T ss_pred             cCceEEEEEecCCCCCCeEEEEeCCcCCHHHHHHHHHHHHHHhcCCCeE-----EcCEEEEcCcHHHHHHHHHHHC--CC
Confidence            4568888877653 57999999999989999999999999999999999     5689999999999999999884  65


Q ss_pred             C
Q 028409          180 I  180 (209)
Q Consensus       180 p  180 (209)
                      .
T Consensus       102 ~  102 (108)
T PRK09019        102 K  102 (108)
T ss_pred             e
Confidence            4

>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.45  E-value=0.0007  Score=50.98  Aligned_cols=58  Identities=16%  Similarity=0.292  Sum_probs=47.3

Q ss_pred             ecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccce------eeeeCCCCCceEEEcCCchhHHHHHHhhh
Q 028409          112 RNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGA------SVVKGPTEKEQIDVQGDISYDIVEFITDT  175 (209)
Q Consensus       112 R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~------SV~k~~~~~~eI~IQGD~~~~i~~~L~~~  175 (209)
                      ++|++.+|+|+-++.   |+..|.++|++-+.-..      .|.   .-.+.|.|+||+..+|.+||.++
T Consensus        22 ~~g~~~~T~IrkI~G---D~~aL~~dL~~~l~~~~~~~~~~~V~---~~~g~i~IkG~~~~~Vk~wL~~~   85 (87)
T PF05046_consen   22 NGGNRKITVIRKIEG---DIWALKKDLRKFLGEKPKKKIDVRVN---ELTGHIEIKGDHVEEVKKWLLEK   85 (87)
T ss_pred             CCCcEeEEEEEeecC---CHHHHHHHHHHHhhhhcCCCcceEEe---ecCCEEEEcCccHHHHHHHHHHC
Confidence            347799999999987   89999999999886433      331   24589999999999999999873

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome

>PRK03988 translation initiation factor IF-2 subunit beta; Validated

Probab=92.87  E-value=0.26  Score=40.26  Aligned_cols=65  Identities=17%  Similarity=0.227  Sum_probs=50.3

Q ss_pred             CCcEEEEEEeecCCeeEEEEeccCCC----CCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhC
Q 028409          102 RQEVVIEKVVRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW  176 (209)
Q Consensus       102 ~~~V~I~~~~R~grK~VT~V~GLe~f----gidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~  176 (209)
                      .++..+.++   |+|  |+|.+|...    .-++.-+.|.|.+-+|+.+++     .++..+|+|.+.....+-++.+|
T Consensus        30 ~p~~~v~~e---G~k--Tvi~Nf~~I~~~L~R~~~hv~ky~~~ELgt~g~i-----~~~~lii~G~~~~~~i~~~L~~y   98 (138)
T PRK03988         30 VPKPDVRIE---GNR--TIIRNFKEIADRLNRDPKHVAKFLLKELGTAGNI-----EGGRLILQGKFSPRVINEKIDRY   98 (138)
T ss_pred             CCCCeEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCceee-----cCCEEEEEEeeCHHHHHHHHHHH
Confidence            455566555   444  999998763    567999999999999999999     34899999998777666555554

>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative

Probab=92.80  E-value=0.28  Score=39.84  Aligned_cols=65  Identities=15%  Similarity=0.159  Sum_probs=49.9

Q ss_pred             CCcEEEEEEeecCCeeEEEEeccCCC----CCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhC
Q 028409          102 RQEVVIEKVVRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW  176 (209)
Q Consensus       102 ~~~V~I~~~~R~grK~VT~V~GLe~f----gidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~  176 (209)
                      .++..+.++   |+|  |+|.+|...    .-+..-+.|.|..-+++.+++     .++..+|+|.+.....+-++.+|
T Consensus        25 mP~~~v~~e---G~k--Tvi~Nf~~Ia~~L~R~~~~v~ky~~~ELgt~g~i-----~~~rlii~G~~~~~~i~~~L~~y   93 (133)
T TIGR00311        25 VPKAYIVIE---GNR--TIIQNFREVAKALNRDEQHLLKYLLKELGTAGNL-----EGGRLILQGKFTHFLLNERIEDY   93 (133)
T ss_pred             CCCceEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCCcee-----cCCEEEEEeecCHHHHHHHHHHH
Confidence            455555555   444  999998763    567999999999999999999     34799999998877666555554

>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5

Probab=92.33  E-value=0.4  Score=37.71  Aligned_cols=67  Identities=12%  Similarity=0.096  Sum_probs=50.3

Q ss_pred             CCcEEEEEEeecCCeeEEEEeccCCC----CCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhC
Q 028409          102 RQEVVIEKVVRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW  176 (209)
Q Consensus       102 ~~~V~I~~~~R~grK~VT~V~GLe~f----gidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~  176 (209)
                      .++..+.++   |+| -|+|.+|...    .-++.-+.|.|..-+++.+++    ++++..+|+|.+...-.+-++..|
T Consensus         6 ~p~~~v~~e---G~~-kTvi~Nf~~I~~~L~R~p~hv~kyl~~ELgt~g~i----d~~~rlii~G~~~~~~i~~~l~~y   76 (110)
T smart00653        6 MPPPQVLRE---GKG-KTVIVNFADIAKALNRPPDHVLKFLLAELGTQGSI----DGKGRLIVNGRFTPKKLQDLLRRY   76 (110)
T ss_pred             cCCCeEEEE---cCC-eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeE----CCCCeEEEEEeeCHHHHHHHHHHH
Confidence            345555555   433 6889998763    568999999999999999999    344899999998776666555544

>PRK14434 acylphosphatase; Provisional

Probab=91.52  E-value=0.83  Score=34.58  Aligned_cols=71  Identities=18%  Similarity=0.120  Sum_probs=53.6

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcc-cceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCC-CCcEEEeccc
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFA-TGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVI-SLSIFFSFSC  190 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfA-cg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp-~~~I~~~dk~  190 (209)
                      -.|+|.=. |+-..-....++++++ -.+.|...+++.-+|.+||+-.+.|..|+.....+-| ...|+-++..
T Consensus         6 i~v~G~VQ-GVGFR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~g~pp~a~V~~v~~~   78 (92)
T PRK14434          6 MIVSGRVQ-GVGFRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRKGPSKWAKVTYVDVT   78 (92)
T ss_pred             EEEEEeec-ceeEhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhcCCCCCEEEEEEEEE
Confidence            34677766 7888889999999999 9999977777778999999866566666665555665 6666665544

>PRK14444 acylphosphatase; Provisional

Probab=90.71  E-value=1.4  Score=33.22  Aligned_cols=70  Identities=9%  Similarity=0.038  Sum_probs=51.2

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEeccc
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFSC  190 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk~  190 (209)
                      -.|+|.-. |+-..-.+..++.+++-++.|...+++.-+|.+||+- +.|.+|+.....+-|...|+-++..
T Consensus         8 i~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~gp~~a~V~~i~~~   77 (92)
T PRK14444          8 VFISGRVQ-GVNFRAYTRDRAREAGVKGWVRNLSDGRVEAVFEGSR-PAVQKMISWCYSGPSHARVERVEVH   77 (92)
T ss_pred             EEEEEeeC-CcCcHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHHHHhCCCCcEEEEEEEE
Confidence            45678777 8889999999999999999997777777899999994 3366666554424344555555443

>PRK14451 acylphosphatase; Provisional

Probab=90.57  E-value=1.3  Score=33.22  Aligned_cols=67  Identities=15%  Similarity=0.107  Sum_probs=51.3

Q ss_pred             EeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409          121 VKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFS  189 (209)
Q Consensus       121 V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk  189 (209)
                      |+|.-. |+-..-....++.+++-.+.|...+++.-+|.+||+- +.|.+|+.....+-|...|+-++.
T Consensus         9 V~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~gp~~a~V~~v~~   75 (89)
T PRK14451          9 ISGRVQ-GVWFRASAKKLAEQLMISGWARNLADGRVEVFACGKE-DKLEEFYTWLQKGPLNARVDVCTR   75 (89)
T ss_pred             EEEeeC-CcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEECH-HHHHHHHHHHhhCCCceEEEEEEE
Confidence            777776 8899999999999999999998888888999999986 336666655543544555555443

>KOG4034 consensus Uncharacterized conserved protein NOF (Neighbor of FAU) [Function unknown]

Probab=90.51  E-value=0.72  Score=38.85  Aligned_cols=70  Identities=14%  Similarity=0.215  Sum_probs=45.9

Q ss_pred             CCcEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhh--hcccceeeeeC-CCCCceEEEcCCchhHHHHHHhhh
Q 028409          102 RQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGK--KFATGASVVKG-PTEKEQIDVQGDISYDIVEFITDT  175 (209)
Q Consensus       102 ~~~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkk--kfAcg~SV~k~-~~~~~eI~IQGD~~~~i~~~L~~~  175 (209)
                      .-+|-..+..| |+|.+|+|+.++.   |.-.|-+.|+.  .+.=+.|+... ..-.+.|.+-||+.+.|.++|.++
T Consensus        95 nlPVYl~~k~~-G~k~lT~IRkVeG---Di~aLe~DL~s~L~~~~~~s~~t~VnelsgqI~~~g~~v~~vr~~L~eK  167 (169)
T KOG4034|consen   95 NLPVYLDYKQR-GNKILTVIRKVEG---DIWALENDLRSTLEMSPKKSYATHVNELSGQIVLKGNHVDTVREWLQEK  167 (169)
T ss_pred             CcceEEeeecC-CcEEEEEEEeecc---cHHHHHHHHHHHHhhccCCChhhhhhhhcceEEEeCChHHHHHHHHHHc
Confidence            34455554444 7899999999997   44455555544  23333443211 122479999999999999999985

>PRK14440 acylphosphatase; Provisional

Probab=90.35  E-value=1.8  Score=32.58  Aligned_cols=69  Identities=10%  Similarity=0.003  Sum_probs=50.0

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFS  189 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk  189 (209)
                      -.|+|.-. |+-........+.+++-.+.|...+++.-+|.+||+- +.|.+|+.....+=|...|+-++.
T Consensus         7 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~l~~gp~~a~V~~i~~   75 (90)
T PRK14440          7 ARVYGLVQ-GVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYE-EALSKLLERIKQGPPAAEVEKVDF   75 (90)
T ss_pred             EEEEEeEe-ccCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCH-HHHHHHHHHHhhCCCCcEEEEEEE
Confidence            35666665 7788889999999999999998777777899999986 566666655543434444554443

>PRK14449 acylphosphatase; Provisional

Probab=90.30  E-value=1.5  Score=32.87  Aligned_cols=69  Identities=13%  Similarity=-0.017  Sum_probs=52.4

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFS  189 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk  189 (209)
                      -+|+|.-. |+-..-....++.+++-.+.|...+++.-+|.+||+- +.|.+|+.....+-|...|+-++.
T Consensus         7 i~v~G~VQ-GVGFR~fv~~~A~~lgl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~l~~~~~~a~V~~i~~   75 (90)
T PRK14449          7 LRITGHVQ-GVGLRYSVYQKAVSLGITGYAENLYDGSVEVVAEGDE-ENIKELINFIKTGLRWARVDNVEE   75 (90)
T ss_pred             EEEEEeec-CcChHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeCH-HHHHHHHHHHhhCCCceEEEEEEE
Confidence            45677665 8899999999999999999998877777999999986 336666665554546656665543

>PRK14437 acylphosphatase; Provisional

Probab=89.66  E-value=1.5  Score=34.31  Aligned_cols=68  Identities=13%  Similarity=0.110  Sum_probs=50.6

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEec
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSF  188 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~d  188 (209)
                      -.|+|.-. |+-..-+...++.+++-.|.|...+++.-+|.+||+.. .|.+|+.....+=|...|+-++
T Consensus        27 i~V~G~VQ-GVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~-~ie~f~~~L~~gP~~a~V~~i~   94 (109)
T PRK14437         27 ATVSGKVQ-GVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGERD-SIMILTEWLWEGPPQAAVSNVN   94 (109)
T ss_pred             EEEEEecC-CcCchHHHHHHHHHhCCeEEEEECCCCCEEEEEEECHH-HHHHHHHHHHhCCCceEEEEEE
Confidence            34577776 88899999999999999999988888889999999865 4555554444344455555444

>PRK14425 acylphosphatase; Provisional

Probab=89.60  E-value=1.3  Score=33.51  Aligned_cols=68  Identities=15%  Similarity=0.035  Sum_probs=48.5

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEec
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSF  188 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~d  188 (209)
                      -.|+|.-. |+-.......++.+++-.|.|...+++.-+|++||+-.. |.+|+.....+=|...|+-++
T Consensus        10 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dGsVei~~qG~~~~-le~f~~~l~~gp~~a~V~~i~   77 (94)
T PRK14425         10 VRITGRVQ-GVGFRDWTRDEAERLGLTGWVRNESDGSVTALIAGPDSA-ISAMIERFRRGPPGASVSGVE   77 (94)
T ss_pred             EEEEEeEe-cccchHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHH-HHHHHHHHhhCCCceEEEEEE
Confidence            34567666 788889999999999999999888778899999997554 444544443243444454443

>PRK14436 acylphosphatase; Provisional

Probab=89.48  E-value=1.9  Score=32.53  Aligned_cols=68  Identities=13%  Similarity=0.034  Sum_probs=51.0

Q ss_pred             EEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409          120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFS  189 (209)
Q Consensus       120 ~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk  189 (209)
                      .|+|.=. |+-.......++.+++=.+.|...+++.-+|.+||+- +.|.+|+.....+-|...|+-++.
T Consensus         9 ~v~G~VQ-GVGFR~~v~~~A~~l~l~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~gp~~a~V~~v~~   76 (91)
T PRK14436          9 RIYGRVQ-GVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDE-ERVEALIGWAHQGPPLARVTRVEV   76 (91)
T ss_pred             EEEEeeC-CcCcHHHHHHHHHHcCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHHHhhCCCceEEEEEEE
Confidence            4567666 7888999999999999999998877777899999986 346666665543545555665553

>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []

Probab=88.92  E-value=0.55  Score=37.73  Aligned_cols=68  Identities=15%  Similarity=0.175  Sum_probs=49.3

Q ss_pred             CCCcEEEEEEeecCCeeEEEEeccCCC----CCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhC
Q 028409          101 ERQEVVIEKVVRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW  176 (209)
Q Consensus       101 ~~~~V~I~~~~R~grK~VT~V~GLe~f----gidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~  176 (209)
                      ..+++.+.++.|    .-|+|.+|...    +-++.-+++.|..-+++.+++    ++.+..+|+|.+...-.+-++.+|
T Consensus        18 kmP~~~v~~eG~----~KTvi~Nf~dI~~~L~R~p~~~~ky~~~ELgt~~~i----d~~~~lii~G~~~~~~i~~~L~~f   89 (125)
T PF01873_consen   18 KMPPPQVKIEGK----KKTVIVNFVDICKALNRDPEHVLKYFGKELGTQGSI----DGKGRLIINGRFSSKQIQDLLDKF   89 (125)
T ss_dssp             CCCT--EEEETS----TEEEETTHHHHHHHHTSSHHHHHHHHHHHSSSEEEE----ETTTEEEEESSSSCCHHHHHHHHH
T ss_pred             ecCCCeEEEEcc----ceeeeecHHHHHHHHCCCHHHHHHHHHHHHCCceEE----CCCCEEEEEEecCHHHHHHHHHHH
Confidence            456677776644    35889998863    458999999999999999999    344899999997665544444433

Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....

>PRK12336 translation initiation factor IF-2 subunit beta; Provisional

Probab=88.60  E-value=1.1  Score=38.49  Aligned_cols=65  Identities=15%  Similarity=0.166  Sum_probs=49.2

Q ss_pred             CCcEEEEEEeecCCeeEEEEeccCCC----CCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhC
Q 028409          102 RQEVVIEKVVRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW  176 (209)
Q Consensus       102 ~~~V~I~~~~R~grK~VT~V~GLe~f----gidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~  176 (209)
                      .++..+.++   |+|  |+|.+|...    .-+..-+.|.|..-+++.+++     .++..+|+|.+...-.+-++..|
T Consensus        26 ~p~~~v~~e---G~k--T~i~N~~~i~~~l~R~~~~~~ky~~~ELgt~~~~-----~~~~~ii~G~~~~~~i~~~l~~y   94 (201)
T PRK12336         26 IPEPKIFIE---GKT--TILTNFGEIADALNRDPDHLMKFLQRELGTAGKI-----EGGRAVFNGKFTEEDIQAAIDAY   94 (201)
T ss_pred             cCCceEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCccee-----cCCEEEEEeeeCHHHHHHHHHHH
Confidence            455555555   333  999998763    567999999999999999999     34689999998777666555554

>PRK14422 acylphosphatase; Provisional

Probab=88.52  E-value=2.6  Score=31.91  Aligned_cols=68  Identities=9%  Similarity=-0.045  Sum_probs=50.5

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEec
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSF  188 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~d  188 (209)
                      -.|+|.-. |+-..-+...++.+++-.+.|...+++.-+|.+||+-.. |.+|+.....+-|...|+-++
T Consensus        10 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~-i~~f~~~l~~gp~~a~V~~i~   77 (93)
T PRK14422         10 AWVHGHVQ-GVGFRWWTRSRALELGLTGYAANLADGRVQVVAEGPRAA-CEKLLQLLRGDDTPGRVDKVV   77 (93)
T ss_pred             EEEEEeeC-CcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHH-HHHHHHHHHhCCCCcEEEEEE
Confidence            45677766 888999999999999999999887778789999998654 555655544463444455443

>PRK14438 acylphosphatase; Provisional

Probab=88.41  E-value=1.9  Score=32.38  Aligned_cols=69  Identities=17%  Similarity=0.152  Sum_probs=51.0

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFS  189 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk  189 (209)
                      -.|+|.-. |+-.......++.+++-.+.|...+++.-+|.+||+- +.|.+|+.....+-|...|+-++-
T Consensus         7 i~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~gp~~a~V~~v~~   75 (91)
T PRK14438          7 VTVKGLVQ-GVAFRHHTQQTAQRLNVSGWVKNLPNGSVQGCFEGEE-TDVAALIDWCHHGPSRARVSGVIV   75 (91)
T ss_pred             EEEEEecC-CcCccHHHHHHHHHcCCEEEEEECCCCEEEEEEEECH-HHHHHHHHHHhhCCCCcEEEEEEE
Confidence            45677766 7888999999999999999998777777899999985 446666655543444455655443

>PRK14429 acylphosphatase; Provisional

Probab=88.40  E-value=1.9  Score=32.31  Aligned_cols=69  Identities=14%  Similarity=0.028  Sum_probs=50.1

Q ss_pred             EEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEeccc
Q 028409          120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFSC  190 (209)
Q Consensus       120 ~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk~  190 (209)
                      .|+|.-. |+-.......++.+++-.+.|...+++.-+|.+||+-.. |.+|+.....+-|...|+-++..
T Consensus         7 ~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-i~~f~~~l~~gp~~a~V~~i~~~   75 (90)
T PRK14429          7 KLTGKVQ-GVGCRRATLTKARALGVTGYVTNCEDGSVEILAQGSDPA-VDNLIAWCEVGVPCTEVLRVTVE   75 (90)
T ss_pred             EEEEeec-CeeeHHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHH-HHHHHHHHhhCCCceEEEEEEEE
Confidence            4566665 788888999999999999999877777789999998643 55555544446444456555444

>PRK14446 acylphosphatase; Provisional

Probab=88.39  E-value=1.6  Score=32.82  Aligned_cols=67  Identities=9%  Similarity=0.117  Sum_probs=50.4

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEe
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFS  187 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~  187 (209)
                      -.|+|.=. |+-..-+...++++++-.+.|...+++.-+|.+||+-. .|.+|+.....+=|...|+-+
T Consensus         6 i~v~G~VQ-GVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~-~l~~f~~~l~~gP~~a~V~~v   72 (88)
T PRK14446          6 FVVSGVVQ-GVWYRASTRERAVALGLVGHARNQADGSVEVVAAGSAA-ALEALEAWLWQGPPAATVAAV   72 (88)
T ss_pred             EEEEEecC-CeeEhHHHHHHHeeCCeEEEEEECCCCCEEEEEEeCHH-HHHHHHHHHhhCCCceEEEEE
Confidence            34677766 78889999999999999999988888889999999853 566665554434455555543

>PRK14443 acylphosphatase; Provisional

Probab=88.18  E-value=2  Score=32.74  Aligned_cols=66  Identities=17%  Similarity=0.151  Sum_probs=48.4

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCC-CCcEEE
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVI-SLSIFF  186 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp-~~~I~~  186 (209)
                      -.|+|.-. |+-....+..++.+++-.|.|...+++.-+|.+||+-.. |.+|+.....+-| ...|+-
T Consensus         8 i~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-l~~f~~~l~~g~p~~a~V~~   74 (93)
T PRK14443          8 LRVTGFVQ-GVGFRYTTKHVAYKYDISGTVKNLDDGSVEIHAIAEEEN-LNKFIDAIKKGPSPGCRIEH   74 (93)
T ss_pred             EEEEEeeC-CccCcHHHHHHHHHcCCEEEEEECCCCEEEEEEECCHHH-HHHHHHHHhcCCCCcEEEEE
Confidence            34667666 788889999999999999999877888899999998433 5555554444654 444444

>PRK14428 acylphosphatase; Provisional

Probab=88.03  E-value=2.5  Score=32.42  Aligned_cols=68  Identities=12%  Similarity=0.088  Sum_probs=51.2

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEec
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSF  188 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~d  188 (209)
                      -.|+|.-. |+-..-....++++++-.+.|...+++.-+|.+||+- +.|.+||.....+=|...|+-++
T Consensus        12 i~v~G~VQ-GVGFR~fv~~~A~~lgL~G~V~N~~dGsVei~~qG~~-~~i~~fi~~l~~gP~~a~V~~v~   79 (97)
T PRK14428         12 IVVTGLVQ-GVGFRYFTVTQARRLGVQGWVRNCRDGSVELEAQGSS-DAVQALVEQLAIGPRWSEVSHVA   79 (97)
T ss_pred             EEEEEecC-CccchHHHHHHHHHcCCEEEEEECCCCEEEEEEEcCH-HHHHHHHHHHhhCCCccEEEEEE
Confidence            45677776 8888999999999999999998777787999999985 55666666655344445555443

>PRK14445 acylphosphatase; Provisional

Probab=87.88  E-value=2.1  Score=32.09  Aligned_cols=69  Identities=22%  Similarity=0.186  Sum_probs=50.7

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFS  189 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk  189 (209)
                      -.|+|.-. |+-..-....++.+++-.+.|...+++.-+|.+||+-.. |.+|+.....+=|...|+-++.
T Consensus         8 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-l~~f~~~l~~gP~~a~V~~i~~   76 (91)
T PRK14445          8 LIVSGLVQ-GVGFRMFIDRAASELNLSGWVRNLPDGTVEIEAQGSSGM-IDELIKQAERGPSRSSVTSIMV   76 (91)
T ss_pred             EEEEEEEc-CcCChHHHHHHHhhCCCEEEEEECCCCeEEEEEEECHHH-HHHHHHHHHhCCCCcEEEEEEE
Confidence            35677766 788899999999999999999877777789999998633 6666655543333455655443

>PRK14433 acylphosphatase; Provisional

Probab=87.86  E-value=2.5  Score=31.57  Aligned_cols=67  Identities=9%  Similarity=0.047  Sum_probs=49.7

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEe
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFS  187 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~  187 (209)
                      -.|+|.-. |+-.......++.+++-.+.|...+++.-+|.+|||-. .|.+|+.....+=|...|+-+
T Consensus         5 i~v~G~VQ-GVGFR~~v~~~A~~~~l~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~l~~gP~~a~V~~i   71 (87)
T PRK14433          5 ALVSGRVQ-GVGYRAFVQKKARELGLSGYAENLSDGRVEVVAEGPKE-ALERLLHWLRRGPRHARVEAV   71 (87)
T ss_pred             EEEEEeee-CcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHH-HHHHHHHHHhhCCCCcEEEEE
Confidence            34567555 78888999999999999999987777778999999964 677777665534333444443

>PRK14452 acylphosphatase; Provisional

Probab=87.78  E-value=3.3  Score=32.37  Aligned_cols=68  Identities=9%  Similarity=-0.013  Sum_probs=50.4

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEec
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSF  188 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~d  188 (209)
                      -.|+|.-. |+-..-....++++++-.|.|...+++.-+|.+||+.. .|.+|+.-...+=|...|+-++
T Consensus        24 i~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dGsVeI~~qG~~~-~ve~F~~~l~~gP~~A~V~~v~   91 (107)
T PRK14452         24 FLIEGRVQ-GVGFRASCCRRALDLGLSGWVRNLSDGSVEVQAEGPPL-ALSELRAWCERGPPGARVKRVD   91 (107)
T ss_pred             EEEEEeec-CcChhHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHH-HHHHHHHHHhcCCCCcEEEEEE
Confidence            56678777 88999999999999999999988877889999999964 5666643333344444554433

>PRK14442 acylphosphatase; Provisional

Probab=87.67  E-value=2.7  Score=31.60  Aligned_cols=69  Identities=10%  Similarity=-0.008  Sum_probs=50.7

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFS  189 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk  189 (209)
                      -.|+|.-. |+-..-....++++++-.+.|...+++.-+|.+||+.. .|.+|+.....+=|...|+-++.
T Consensus         8 ~~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~-~i~~f~~~l~~gp~~a~V~~v~~   76 (91)
T PRK14442          8 AYVGGRVQ-GVGFRQATREEADRLELDGWVRNLDDGRVEVVWEGEED-RAKALERWLGRGPRHAEVSAVEV   76 (91)
T ss_pred             EEEEEecC-CccccHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHH-HHHHHHHHHhhCCCCeEEEEEEE
Confidence            35677777 88889999999999999999988888889999999865 36666555442333344554443

>PRK14420 acylphosphatase; Provisional

Probab=87.56  E-value=2.7  Score=31.37  Aligned_cols=69  Identities=14%  Similarity=0.008  Sum_probs=50.3

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFS  189 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk  189 (209)
                      -.|+|.-. |+-..-....++.+++-.+.|...+++.-+|.+||+- +.|.+|+.....+-|...|+-++.
T Consensus         6 ~~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~~p~~a~V~~i~~   74 (91)
T PRK14420          6 IIVDGRVQ-GVGFRYFVQMEADKRKLTGWVKNRDDGTVEIEAEGPE-EALQLFLDAIEKGSPFSKVTDVHI   74 (91)
T ss_pred             EEEEEeeC-CcCChHHHHHHHHHcCCEEEEEECCCCcEEEEEEECH-HHHHHHHHHHHhCCCCCEEEEEEE
Confidence            34566665 7788888999999999999998877777899999984 666666665544645445555443

>PRK14427 acylphosphatase; Provisional

Probab=87.42  E-value=2.5  Score=32.06  Aligned_cols=68  Identities=9%  Similarity=-0.049  Sum_probs=49.9

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEec
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSF  188 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~d  188 (209)
                      -.|+|.=. |+-..-+.+.++.+++-.+.|...+++.-+|.+||+... |.+|+.....+=|...|+-++
T Consensus        10 i~v~G~VQ-GVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~~-i~~f~~~l~~~p~~a~V~~i~   77 (94)
T PRK14427         10 ARVFGVVQ-GVGFRYWTMRKAEELGLTGTVRNLDDGSVALVAEGTGEQ-VEKLLDWLNSDRAPGRVERVD   77 (94)
T ss_pred             EEEEEEeC-CcCChHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHHH-HHHHHHHHhhCCCCcEEEEEE
Confidence            34567666 788899999999999999999877777789999998743 666665554453344454443

>PRK14435 acylphosphatase; Provisional

Probab=87.40  E-value=2.7  Score=31.55  Aligned_cols=70  Identities=14%  Similarity=0.141  Sum_probs=51.3

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEeccc
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFSC  190 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk~  190 (209)
                      -.|+|.-. |+-.......++.+++-.+.|...+++.-+|.+||+- +.|.+|+.....+=|...|+-++..
T Consensus         6 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~i~~f~~~l~~gp~~a~V~~v~~~   75 (90)
T PRK14435          6 IRVEGIVQ-GVGFRYFTRRVAKSLGVKGYVMNMDDGSVFIHAEGDE-NALRRFLNEVAKGPPAAVVTNVSVE   75 (90)
T ss_pred             EEEEEEeC-CcCChHHHHHHHHHhCCEEEEEECCCCCEEEEEEECH-HHHHHHHHHHhhCCCCcEEEEEEEE
Confidence            34577766 7888899999999999999998888888999999986 3466666555434444445544433

>PRK14423 acylphosphatase; Provisional

Probab=86.86  E-value=2.6  Score=31.74  Aligned_cols=68  Identities=9%  Similarity=0.025  Sum_probs=50.6

Q ss_pred             EEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409          120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFS  189 (209)
Q Consensus       120 ~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk  189 (209)
                      .|+|.=. |+-..-....++.+++-.|.|...+++.-+|.+||+-. .|.+|+.....+-|...|+-++.
T Consensus        10 ~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~l~~gp~~a~V~~v~~   77 (92)
T PRK14423         10 FVSGRVQ-GVYYRASTRDTARELGVDGWVRNLDDGRVEAVFEGPRD-AVEAMVEWCHEGSPAAVVEDVEV   77 (92)
T ss_pred             EEEEecC-CeeehHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHH-HHHHHHHHHHhCCCceEEEEEEE
Confidence            4567666 78889999999999999999977777778999999864 56666655544545555555543

>PRK14426 acylphosphatase; Provisional

Probab=86.42  E-value=3.6  Score=30.99  Aligned_cols=70  Identities=9%  Similarity=-0.051  Sum_probs=50.7

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCC-CcEEEeccc
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVIS-LSIFFSFSC  190 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~-~~I~~~dk~  190 (209)
                      -.|+|.-. |+-.......++.+++-.|.|...+++.-+|.+||+... |.+|+.....+.|+ ..|+-++..
T Consensus         8 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~-i~~f~~~l~~g~P~~a~V~~i~~~   78 (92)
T PRK14426          8 AWVYGRVQ-GVGFRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEEQ-VEKLMEWLKEGGPRSARVDRVLTE   78 (92)
T ss_pred             EEEEEeeC-CcCchHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHHH-HHHHHHHHhcCCCCCeEEEEEEEE
Confidence            34567666 788889999999999999999877878889999999533 55555554446444 446655544

>PRK14421 acylphosphatase; Provisional

Probab=85.85  E-value=3.5  Score=31.74  Aligned_cols=70  Identities=10%  Similarity=0.012  Sum_probs=50.1

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEeccc
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFSC  190 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk~  190 (209)
                      -.|+|.-. |+-..-....++.+++-.|.|...+++.-+|.+||+-.. |.+|+.....+=|...|+-++..
T Consensus         8 ~~v~G~VQ-GVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~-i~~f~~~l~~gP~~a~V~~v~~~   77 (99)
T PRK14421          8 VTIRGRVQ-GVGYRAWVARTAEALGLEGWVRNRRDGSVEALFAGPADA-VAEMIARCRRGPSAARVDAVEDE   77 (99)
T ss_pred             EEEEEeEc-CccchHHHHHHHHHhCCEEEEEECCCCEEEEEEeCCHHH-HHHHHHHHHhCCCCcEEEEEEEE
Confidence            34667666 788899999999999999999777777789999998643 55555444334345555554443

>PRK14424 acylphosphatase; Provisional

Probab=85.76  E-value=5.4  Score=30.38  Aligned_cols=84  Identities=13%  Similarity=0.019  Sum_probs=55.3

Q ss_pred             EEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecccccchhhh
Q 028409          118 ITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFSCVLHKWCI  197 (209)
Q Consensus       118 VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk~~~~~~~~  197 (209)
                      --+|+|--. |+-.......++.+++-.+.|...+++.-+|.+||+-.. |.+|+.....+=|...|.-+    -..|.-
T Consensus        10 ~~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-v~~f~~~l~~gp~~a~V~~v----~~~~~~   83 (94)
T PRK14424         10 YVRVRGVVQ-GVGFRHATVREAHALGLRGWVANLEDGTVEAMIQGPAAQ-IDRMLAWLRHGPPAARVTEV----TFEERR   83 (94)
T ss_pred             EEEEEEeec-CCchHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECHHH-HHHHHHHHHhCCCCcEEEEE----EEEEeC
Confidence            445677666 788899999999999999999877777789999998643 65555554423233333333    333444


Q ss_pred             ccccCCCccc
Q 028409          198 WKTLKEDFVP  207 (209)
Q Consensus       198 ~~~~~~~~~~  207 (209)
                      |..--.+|-|
T Consensus        84 ~~~~~~~F~~   93 (94)
T PRK14424         84 TEKRFERFQQ   93 (94)
T ss_pred             CCCCCCCcEE
Confidence            5443345543

>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3

Probab=85.67  E-value=3  Score=30.83  Aligned_cols=69  Identities=20%  Similarity=0.156  Sum_probs=50.2

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFS  189 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk  189 (209)
                      -+|+|.-. |+-....++.++.+++-.+.|...+++.-+|++||+- +.|.+|+.....+-|...|.-++.
T Consensus         8 i~v~G~VQ-GVgFR~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~-~~l~~f~~~l~~g~p~a~V~~i~~   76 (91)
T PF00708_consen    8 IIVSGRVQ-GVGFRPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEE-EQLEEFIKWLKKGPPPARVDEIEV   76 (91)
T ss_dssp             EEEEEETS-SSSHHHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEH-HHHHHHHHHHHHSSTTSEEEEEEE
T ss_pred             EEEEEEEC-cCChhHHHHHHHHHhCCceEEEECCCCEEEEEEEeCH-HHHHHHHHHHHhCCCCcEEEEEEE
Confidence            46788666 8999999999999999999998877777899999964 335555544444666666665544

6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....

>PRK14447 acylphosphatase; Provisional

Probab=85.47  E-value=3.9  Score=31.02  Aligned_cols=69  Identities=10%  Similarity=0.039  Sum_probs=49.3

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCC-CceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTE-KEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFS  189 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~-~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk  189 (209)
                      -.|+|.-. |+-..-+.+.++.+++-.+.|...+++ .-+|.+||+ .+.|.+|+.....+=|...|+-++.
T Consensus         8 ~~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~~Vei~~qG~-~~~l~~f~~~l~~gp~~a~V~~v~~   77 (95)
T PRK14447          8 LFIRGKVQ-GVFFRQSMKEVANRNGVRGWVRNRSDGRTVEAVLEGP-RDAVLKVIEWARVGPPGARVEDVEV   77 (95)
T ss_pred             EEEEEecC-CccchHHHHHHHhhcCeEEEEEECCCCCEEEEEEEeC-HHHHHHHHHHHhhCCCCeEEEEEEE
Confidence            45678777 889999999999999999999877777 479999998 4555555543322434444555443

>PRK14450 acylphosphatase; Provisional

Probab=85.40  E-value=5.1  Score=29.99  Aligned_cols=68  Identities=13%  Similarity=0.162  Sum_probs=49.5

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCC-ceEEEcCC--chhHHHHHHhhhCCCCCCCcEEEeccc
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEK-EQIDVQGD--ISYDIVEFITDTWPAVISLSIFFSFSC  190 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~-~eI~IQGD--~~~~i~~~L~~~~~gIp~~~I~~~dk~  190 (209)
                      -+|+|.=. |+-.......++.+++-.|.|...+++. -+|.+||+  ..+...++|.   .+=|...|+-++..
T Consensus         6 ~~v~G~VQ-GVGFR~~v~~~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~---~gp~~a~V~~v~~~   76 (91)
T PRK14450          6 AIVKGKVQ-GVYFRDFTRTQATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLR---SGPPRAEVKEVETS   76 (91)
T ss_pred             EEEEEEec-CcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh---hCCCCcEEEEEEEE
Confidence            35667666 7888999999999999999997777774 79999998  4555555553   25444556655543

>PRK14432 acylphosphatase; Provisional

Probab=84.69  E-value=4.6  Score=30.57  Aligned_cols=69  Identities=10%  Similarity=-0.060  Sum_probs=50.1

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEc-CCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQ-GDISYDIVEFITDTWPAVISLSIFFSFS  189 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQ-GD~~~~i~~~L~~~~~gIp~~~I~~~dk  189 (209)
                      -+|+|.-. |+-.......++.+++-.|.|...+++.-+|.+| ||- +.|.+|+.....|=|...|+-++.
T Consensus         6 ~~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~~G~~-~~v~~f~~~l~~gp~~a~V~~v~~   75 (93)
T PRK14432          6 YFISGKVQ-GVGFRFFTEQIANNMKLKGFVKNLNDGRVEIVAFFNTK-EQMKKFEKLLKNGNKYSNIENIEK   75 (93)
T ss_pred             EEEEEeec-CeeehHHHHHHHHHhCCEEEEEECCCCCEEEEEEECCH-HHHHHHHHHHHhCCCccEEEEEEE
Confidence            35667666 7888889999999999999998777787899998 985 556666655544634445554443

>PRK14448 acylphosphatase; Provisional

Probab=84.14  E-value=5.9  Score=29.70  Aligned_cols=67  Identities=16%  Similarity=0.063  Sum_probs=48.9

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEe
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFS  187 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~  187 (209)
                      -.|+|.-. |+-.....+.++.+++-.+.|...+++.-+|.+||+-. .|.+|+.....+=|...|+-+
T Consensus         6 ~~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~v~~f~~~l~~gp~~a~V~~v   72 (90)
T PRK14448          6 FIVYGHVQ-GVGFRYFTWQEATKIGIKGYVKNRPDGSVEVVAVGSDA-QIAAFRDWLQHGPPTAVVCNV   72 (90)
T ss_pred             EEEEEeec-CcchHHHHHHHHHHhCCEEEEEECCCCCEEEEEEeCHH-HHHHHHHHHHhCCCceEEEEE
Confidence            45677766 88899999999999999999987777778999999863 355555544423333444443

>PRK14439 acylphosphatase; Provisional

Probab=83.67  E-value=4.8  Score=33.98  Aligned_cols=71  Identities=14%  Similarity=0.010  Sum_probs=51.2

Q ss_pred             EEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCC-CCcEEEeccc
Q 028409          118 ITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVI-SLSIFFSFSC  190 (209)
Q Consensus       118 VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp-~~~I~~~dk~  190 (209)
                      --.|+|.-+ |+-.......++.+++-.|.|...+++.-+|++||+-.. |.+|+.....+-| ...|+-++..
T Consensus        78 ~i~VsGrVQ-GVGFR~fv~~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~-Ie~Fi~~L~~~gPp~A~Ve~I~v~  149 (163)
T PRK14439         78 IAWVYGRVQ-GVGFRYTTQYEAKKLGLTGYAKNLDDGSVEVVACGEEGQ-VEKLMQWLKSGGPRSARVERVLSE  149 (163)
T ss_pred             EEEEEEeeC-CcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHH-HHHHHHHHhhCCCCCeEEEEEEEE
Confidence            345677777 888999999999999999999777778889999998643 5555544432234 4556655544

>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain

Probab=83.33  E-value=1  Score=32.39  Aligned_cols=29  Identities=31%  Similarity=0.661  Sum_probs=22.5

Q ss_pred             eeEEEcCCCCCCccccccCCChhhhHHHHHHhCCCc
Q 028409            8 VRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPEL   43 (209)
Q Consensus         8 ~~V~YC~vCs~P~EYCEfg~~~~kCk~WL~~n~p~l   43 (209)
                      ++|.||.-|+       |.+-+..-++=|...+|+.
T Consensus         1 V~IeyC~~C~-------y~~Ra~~l~q~L~~~Fp~~   29 (72)
T TIGR02174         1 VEIEYCGSCG-------YKPRAAWLKQELLEEFPDL   29 (72)
T ss_pred             CEEEECCCCC-------ChHHHHHHHHHHHHHCCCC
Confidence            5789999998       6777777777777777764

This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.

>PRK14441 acylphosphatase; Provisional

Probab=83.09  E-value=5.6  Score=30.02  Aligned_cols=70  Identities=10%  Similarity=0.106  Sum_probs=50.1

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEeccc
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFSC  190 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk~  190 (209)
                      -.|+|.=. |+-.......++++++-.+.|...+++.-+|.+||+-. .|..|+.....+=|...|+-++..
T Consensus         9 i~v~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~-~i~~f~~~l~~gp~~a~V~~v~~~   78 (93)
T PRK14441          9 IVVSGRVQ-GVAFRQSAADEARRLGVEGWVRNLPDGRVEAEAEGERA-AVGALVRWCHAGPPAARVDRVEVE   78 (93)
T ss_pred             EEEEEecC-CccchHHHHHHHhhcCcEEEEEECCCCEEEEEEEECHH-HHHHHHHHHhhCCCCcEEEEEEEE
Confidence            35577776 88889999999999999999987777778999999833 455554443324345556665544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	209
2ogh_A	108	Eukaryotic translation initiation factor EIF-1; al	6e-20
2if1_A	126	EIF1, SUI1; translation initiation factor; NMR {Ho	4e-19
2xzm_F	101	EIF1; ribosome, translation; 3.93A {Tetrahymena th	8e-18
1d1r_A	116	Hypothetical 11.4 KD protein YCIH in PYRF-OSMB int	3e-11

>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae} Length = 108

 Score = 79.9 bits (197), Expect = 6e-20
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 1/84 (1%)

Query: 95  GKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTE 154
           G  +      + I    RN RK +T V+G+      L    K L K FA   ++VK P  
Sbjct: 16  GDDETATSNYIHIRIQQRNGRKTLTTVQGVPE-EYDLKRILKVLKKDFACNGNIVKDPEM 74

Query: 155 KEQIDVQGDISYDIVEFITDTWPA 178
            E I +QGD    + EF+      
Sbjct: 75  GEIIQLQGDQRAKVCEFMISQLGL 98

>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1 Length = 126

 Score = 78.4 bits (193), Expect = 4e-19
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 1/83 (1%)

Query: 93  PGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGP 152
               +       + I    RN RK +T V+G+           K   KKFA   +V++ P
Sbjct: 32  GDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIA-DDYDKKKLVKAFKKKFACNGTVIEHP 90

Query: 153 TEKEQIDVQGDISYDIVEFITDT 175
              E I +QGD   +I +F+ + 
Sbjct: 91  EYGEVIQLQGDQRKNICQFLVEI 113

>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F Length = 101

 Score = 74.5 bits (183), Expect = 8e-18
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 100 KERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQID 159
             +  + I    R  RKC T V+G+           K   K  +  A++V+    K+ I 
Sbjct: 14  DFQTHIHIRVEQRRGRKCFTTVEGIPP-EFDYEKIMKYWKKWLSCNATIVEEDEGKKVIK 72

Query: 160 VQGDISYDIVEFITDT 175
           + GD    I +F+++ 
Sbjct: 73  LNGDHRNQIQQFLSEE 88

>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1 Length = 116

 Score = 57.5 bits (139), Expect = 3e-11
 Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 83  SSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKR-KCITIVKGLDLFGVKLSDASKKLGKK 141
           S++   +       ++ K    V I++    ++ K + ++ G+DL   +L+  + +L KK
Sbjct: 11  STETGRIDEPKAAPVRPKGDGVVRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKK 70

Query: 142 FATGASVVKGPTEKEQIDVQGDISYDIVEFITD 174
              G +V  G      I++QGD    +   +  
Sbjct: 71  CGCGGAVKDG-----VIEIQGDKRDLLKSLLEA 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
2ogh_A	108	Eukaryotic translation initiation factor EIF-1; al	99.92
2xzm_F	101	EIF1; ribosome, translation; 3.93A {Tetrahymena th	99.92
2if1_A	126	EIF1, SUI1; translation initiation factor; NMR {Ho	99.88
1d1r_A	116	Hypothetical 11.4 KD protein YCIH in PYRF-OSMB int	99.84
2d74_B	148	Translation initiation factor 2 beta subunit; prot	90.12
2fhm_A	91	Probable acylphosphatase; hydrolase; NMR {Bacillus	89.94
1nee_A	138	EIF-2-beta, probable translation initiation factor	88.46
1gxu_A	91	Hydrogenase maturation protein HYPF; phosphatase,	87.73
2e9h_A	157	EIF-5, eukaryotic translation initiation factor 5;	87.62
3trg_A	98	Acylphosphatase; fatty acid and phospholipid metab	87.04
2lxf_A	121	Uncharacterized protein; beaver fever, giardiasis,	86.72
2bjd_A	101	Acylphosphatase; hyperthermophIle, hydrolase; 1.27	85.11
1ulr_A	88	Putative acylphosphatase; hydrolase, structural ge	84.76
1w2i_A	91	Acylphosphatase; hydrolase, thermophilic, stabilit	84.4
2g2k_A	170	EIF-5, eukaryotic translation initiation factor 5;	83.98
2vh7_A	99	Acylphosphatase-1; hydrolase, acetylation; 1.45A {	83.71
1urr_A	102	CG18505 protein; acylphosphatase, enzyme; 1.5A {Dr	83.5
1k8b_A	52	EIF-2-beta, probable translation initiation factor	81.82

>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}

Probab=99.92  E-value=8.6e-25  Score=169.55  Aligned_cols=87  Identities=29%  Similarity=0.363  Sum_probs=81.7

Q ss_pred             cCCCCcEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCC
Q 028409           99 KKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPA  178 (209)
Q Consensus        99 K~~~~~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~g  178 (209)
                      ++..++|+|++++|+|||.||+|+||+. ++|+++|||.|+++||||+||.+.++++++|+|||||++.|.++|.++. .
T Consensus        20 ~~~~~~V~Ir~~~R~g~K~VT~V~Gl~~-~~dlk~lak~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~g-~   97 (108)
T 2ogh_A           20 TATSNYIHIRIQQRNGRKTLTTVQGVPE-EYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQL-G   97 (108)
T ss_dssp             CCCSCSEEEEEECCSSSCCEEEEECCCT-TSCHHHHHHHHHHHHCCCEEEECCTTSSCEEEEESSCHHHHHHHHHHHH-T
T ss_pred             cCCCCeEEEEEEEccCCceEEEEeCCCc-chhHHHHHHHHHHHhcCceEEecCCCCceEEEEcCCHHHHHHHHHHHcC-C
Confidence            4667899999999999999999999997 9999999999999999999999988888999999999999999999986 7


Q ss_pred             CCCCcEEEe
Q 028409          179 VISLSIFFS  187 (209)
Q Consensus       179 Ip~~~I~~~  187 (209)
                      +|+++|++.
T Consensus        98 ~~~~~I~vh  106 (108)
T 2ogh_A           98 LQKKNIKIH  106 (108)
T ss_dssp             SCCSCEEEC
T ss_pred             CCHHHEEEc
Confidence            799999985

>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F

Probab=99.92  E-value=9.4e-25  Score=167.66  Aligned_cols=84  Identities=23%  Similarity=0.324  Sum_probs=79.0

Q ss_pred             CCCcEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCC-
Q 028409          101 ERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAV-  179 (209)
Q Consensus       101 ~~~~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gI-  179 (209)
                      ..++|+|++++|+|||.||+|+||+ |++||++|||.|+++||||+||.+.|+++++|+|||||++.|.+||.++  |+ 
T Consensus        15 ~~~~v~I~~~~R~g~K~VT~V~Gl~-~~~dlk~laK~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~--G~~   91 (101)
T 2xzm_F           15 FQTHIHIRVEQRRGRKCFTTVEGIP-PEFDYEKIMKYWKKWLSCNATIVEEDEGKKVIKLNGDHRNQIQQFLSEE--GIA   91 (101)
T ss_dssp             CSCCEEEEEEEEETTEEEEEEECCC-TTSCTHHHHHHHHHHHTSCCCEEECSTTCEEEEEESCCHHHHHHHHHHH--SSS
T ss_pred             CCCeEEEEEEeccCCccEEEEecCC-CchhHHHHHHHHHHHhcCCeEEecCCCCceEEEEeCcHHHHHHHHHHHc--CCC
Confidence            3678999999999999999999999 9999999999999999999999999888889999999999999999986  55 


Q ss_pred             CCCcEEEe
Q 028409          180 ISLSIFFS  187 (209)
Q Consensus       180 p~~~I~~~  187 (209)
                      |+++|++.
T Consensus        92 ~~~~I~vh   99 (101)
T 2xzm_F           92 AVDNITIH   99 (101)
T ss_dssp             CTTTEEEC
T ss_pred             CHHHEEEc
Confidence            99999874

>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1

Probab=99.88  E-value=2.8e-23  Score=165.15  Aligned_cols=85  Identities=26%  Similarity=0.351  Sum_probs=79.4

Q ss_pred             CCCCcEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCC
Q 028409          100 KERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAV  179 (209)
Q Consensus       100 ~~~~~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gI  179 (209)
                      +..+.|+|++++|+|||.||+|+||+. ++||++|||.|+++||||+||.+.++++++|+||||+++.|.+||.++  |+
T Consensus        39 g~~~~V~Ir~~~R~grK~VT~V~GL~~-~~dlk~laK~LKkk~acgGtVk~~~e~g~~I~IQGD~r~~I~~~L~~~--G~  115 (126)
T 2if1_A           39 GTEDYIHIRIQQRNGRKTLTTVQGIAD-DYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEI--GL  115 (126)
T ss_dssp             SCTTCEECCCCCSSSSCCBCEEBSCCT-TSCHHHHHTTHHHHTCCCEEEECCTTTSSEEEESBCCHHHHHHHHHHH--TS
T ss_pred             CCCCeEEEEEEeecCCccEEEEeCCCC-chhHHHHHHHHHHHhcCCeEEecCCCCccEEEEcCCHHHHHHHHHHHc--CC
Confidence            668899999999999999999999998 999999999999999999999988888899999999999999999986  55


Q ss_pred             -CCCcEEEe
Q 028409          180 -ISLSIFFS  187 (209)
Q Consensus       180 -p~~~I~~~  187 (209)
                       |+++|++.
T Consensus       116 ~~~~~I~vh  124 (126)
T 2if1_A          116 AKDDQLKVH  124 (126)
T ss_dssp             SCTTTEECC
T ss_pred             CChhhEEee
Confidence             79999863

>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1

Probab=99.84  E-value=9.6e-22  Score=154.30  Aligned_cols=80  Identities=21%  Similarity=0.238  Sum_probs=72.1

Q ss_pred             CCCcEEEEEEeecCC--eeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCC
Q 028409          101 ERQEVVIEKVVRNKR--KCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPA  178 (209)
Q Consensus       101 ~~~~V~I~~~~R~gr--K~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~g  178 (209)
                      ..+.|+|+++ |+||  |.||+|+||+.|++||++|||.|+++||||+||     ++++|+|||||++.|.+||.++  |
T Consensus        29 ~~~~V~I~~e-r~gR~GK~VT~V~Gl~~~~~dlk~laK~LKkk~acgGtV-----k~~~IeiQGD~r~~i~~~L~~~--G  100 (116)
T 1d1r_A           29 GDGVVRIQRQ-TSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAV-----KDGVIEIQGDKRDLLKSLLEAK--G  100 (116)
T ss_dssp             CCCEEEEEEC-CCSSSSCCCEEEECCCSCHHHHHHHHHHHTTSSSSCCBC-----CSSCEEECSCCHHHHHHHHHHH--T
T ss_pred             CCCeEEEEEE-eCCCCCCeEEEEeCCcCchhhHHHHHHHHHHHhcCCcEE-----cCCEEEEeCcHHHHHHHHHHHc--C
Confidence            3678999998 7666  999999999999999999999999999999999     5689999999999999999985  7


Q ss_pred             CCCCcEEEec
Q 028409          179 VISLSIFFSF  188 (209)
Q Consensus       179 Ip~~~I~~~d  188 (209)
                      ++.++|+.++
T Consensus       101 ~~vk~i~~~~  110 (116)
T 1d1r_A          101 MKVKLAGGLE  110 (116)
T ss_dssp             CEECCCCCCC
T ss_pred             CCcceecccc
Confidence            7888877654

>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*

Probab=90.12  E-value=0.3  Score=39.28  Aligned_cols=65  Identities=14%  Similarity=0.151  Sum_probs=48.2

Q ss_pred             CCcEEEEEEeecCCeeEEEEeccCCC----CCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhC
Q 028409          102 RQEVVIEKVVRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW  176 (209)
Q Consensus       102 ~~~V~I~~~~R~grK~VT~V~GLe~f----gidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~  176 (209)
                      .+++.+.++   |+|  |+|.+|...    .=++.-+.|.|..-+++.+++.     ++..+|+|.+...-.+-++..|
T Consensus        32 mP~~~v~~e---GkK--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id-----~~rlii~G~~~~~~i~~~L~~y  100 (148)
T 2d74_B           32 VPGALVTIE---GNK--TIIENFKDIADALNRDPQHLLKFLLREIATAGTLE-----GRRVVLQGRFTPYLIANKLKKY  100 (148)
T ss_dssp             CCCCCEEEE---TTE--EEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEE-----TTEEEESSCCCHHHHHHHHHHH
T ss_pred             cCCCeEEEe---cCe--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-----CCEEEEEeeeCHHHHHHHHHHH
Confidence            455555555   544  999988763    4578889999999999999993     6899999998766655444433

>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A

Probab=89.94  E-value=1.3  Score=32.11  Aligned_cols=68  Identities=15%  Similarity=0.025  Sum_probs=51.3

Q ss_pred             EEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409          120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFS  189 (209)
Q Consensus       120 ~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk  189 (209)
                      .|+|.-. |+-..-....++++++-.+.|...+++.-+|++||+-. .|.+|+.....+-|...|+-++.
T Consensus         7 ~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~-~i~~f~~~l~~~~p~a~V~~v~~   74 (91)
T 2fhm_A            7 IVDGRVQ-GVGFRYFVQMEADKRKLAGWVKNRDDGRVEILAEGPEN-ALQSFVEAVKNGSPFSKVTDISV   74 (91)
T ss_dssp             EEEEECC-SSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEECHH-HHHHHHHHHHTTCSSSEEEEEEE
T ss_pred             EEEEeEC-CcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHH-HHHHHHHHHHhCCCccEEEEEEE
Confidence            5788766 89999999999999999999988777778999999853 24444444333656666666543

>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1

Probab=88.46  E-value=0.25  Score=39.26  Aligned_cols=65  Identities=9%  Similarity=0.080  Sum_probs=48.7

Q ss_pred             CCcEEEEEEeecCCeeEEEEeccCCC----CCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhC
Q 028409          102 RQEVVIEKVVRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW  176 (209)
Q Consensus       102 ~~~V~I~~~~R~grK~VT~V~GLe~f----gidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~  176 (209)
                      .+++.+.++   |+|  |+|.+|...    .=++.-+.|.|..-+++.+++    + ++..+|+|.+...-.+-++..|
T Consensus        30 mp~~~v~~e---G~k--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~i----d-~~rlii~G~~~~~~i~~~L~~y   98 (138)
T 1nee_A           30 VPKAYSVIQ---GNR--TFIQNFREVADALNRDPQHLLKFLLRELGTAGNL----E-GGRAILQGKFTHFLINERIEDY   98 (138)
T ss_dssp             CSCCCCCEE---TTE--EEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCC----B-TTTEEEESSCSSSHHHHHHHHH
T ss_pred             cCCCeEEEE---CCc--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceee----c-CCEEEEEeeeCHHHHHHHHHHH
Confidence            445555555   666  999998863    457899999999999999999    3 6799999998766555444443

>1gxu_A Hydrogenase maturation protein HYPF; phosphatase, acylphosphatases, hydrogenase maturations, fibril formation, zinc-finger, complete proteome; 1.27A {Escherichia coli} SCOP: d.58.10.1 PDB: 1gxt_A

Probab=87.73  E-value=3.1  Score=30.15  Aligned_cols=64  Identities=11%  Similarity=0.020  Sum_probs=50.9

Q ss_pred             EEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEec
Q 028409          120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSF  188 (209)
Q Consensus       120 ~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~d  188 (209)
                      .|+|.-+ |+-..-....++.+++-.+.|...+++ -+|++||+- +.+.++|...  +=|...|+-++
T Consensus        12 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~VrN~~dG-Vei~~eG~~-~~f~~~l~~~--~P~~A~V~~v~   75 (91)
T 1gxu_A           12 RIRGKVQ-GVGFRPFVWQLAQQLNLHGDVCNDGDG-VEVRLREDP-EVFLVQLYQH--CPPLARIDSVE   75 (91)
T ss_dssp             EEEEECS-SSSHHHHHHHHHHHHTCCEEEEECSSS-EEEEESSCC-HHHHHHHHHT--CCTTCEEEEEE
T ss_pred             EEEEeeC-CcCHHHHHHHHHHHcCCeEEEEECCCc-EEEEEEECH-HHHHHHHhhC--CCCCEEEEEEE
Confidence            5788776 899999999999999999999877777 899999999 7777887653  22445555544

>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.62  E-value=0.31  Score=39.54  Aligned_cols=71  Identities=8%  Similarity=0.098  Sum_probs=51.8

Q ss_pred             CCcEEEEEEeecCCeeEEEEeccCCC----CCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhC
Q 028409          102 RQEVVIEKVVRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW  176 (209)
Q Consensus       102 ~~~V~I~~~~R~grK~VT~V~GLe~f----gidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~  176 (209)
                      .+++.+.++.++.+ .-|+|.+|...    .=++.-+.|.|..-+++.+++.   .+.+..+|+|.+.....+-++..|
T Consensus        25 mP~~~v~~eG~gnG-~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELGt~g~id---~~~~rlii~G~~~~~~i~~~L~~y   99 (157)
T 2e9h_A           25 MPRLIAKVEGKGNG-IKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFD---VKNDRYIVNGSHEANKLQDMLDGF   99 (157)
T ss_dssp             EECCCEEECSSSSS-CEEEETTHHHHHHHTTSCTHHHHHHHHHHHTCCEEEE---TTTTEEEEEBCCCHHHHHHHHHHH
T ss_pred             cCCCeEEEeccCCc-cEEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec---CCCCEEEEEeeeCHHHHHHHHHHH
Confidence            45666777777544 35888888753    4578889999999999999992   156899999998766555444433

>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}

Probab=87.04  E-value=2.8  Score=30.85  Aligned_cols=67  Identities=13%  Similarity=0.103  Sum_probs=50.2

Q ss_pred             EEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEec
Q 028409          120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSF  188 (209)
Q Consensus       120 ~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~d  188 (209)
                      .|+|.-. |+-..-....++.+++-.+.|...+++.-+|++||+ .+.|..|+.....+=|...|+-++
T Consensus        17 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~-~~~l~~f~~~l~~gPp~A~V~~v~   83 (98)
T 3trg_A           17 TVSGKVQ-GVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGE-RDSIMILTEWLWEGPPQAAVSNVN   83 (98)
T ss_dssp             EEEEECS-SSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEE-HHHHHHHHHHTTTCSTTCEEEEEE
T ss_pred             EEEEeEC-CCCccHHHHHHHHHcCCeEEEEECCCCEEEEEEEEC-HHHHHHHHHHHHhCCCCcEEEEEE
Confidence            5778766 899999999999999999999877777789999998 445666665544343445555443

>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}

Probab=86.72  E-value=1.5  Score=33.96  Aligned_cols=66  Identities=17%  Similarity=0.038  Sum_probs=48.6

Q ss_pred             EeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEec
Q 028409          121 VKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSF  188 (209)
Q Consensus       121 V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~d  188 (209)
                      |+|.-+ |+-..-....++.+++-.+.|...+++.-+|++||+- +.|.+||.....|=|...|+-++
T Consensus        40 V~G~VQ-GVGFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~-~~v~~f~~~l~~gPp~A~V~~v~  105 (121)
T 2lxf_A           40 VTGKVQ-GVFFRKYTKKEADALSLVGYVTNNEDGSVSGVVQGPK-EQVDAFVKYLHKGSPKSVVKKVS  105 (121)
T ss_dssp             EEECTT-CCCCHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEH-HHHHHHHHHHHHCCTTCCEEEEE
T ss_pred             EEEeeC-CcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECH-HHHHHHHHHHHhCCCCCEEEEEE
Confidence            667666 7888999999999999999998877777899999973 34444443333365666666554

>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A

Probab=85.11  E-value=3.7  Score=30.39  Aligned_cols=67  Identities=10%  Similarity=0.028  Sum_probs=49.8

Q ss_pred             EEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEec
Q 028409          120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSF  188 (209)
Q Consensus       120 ~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~d  188 (209)
                      .|+|.-+ |+-..-.+..++++++-.|.|...+++.-+|++||+.. .|.+|+.....+=|...|+-++
T Consensus        19 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~-~i~~f~~~l~~gP~~A~V~~v~   85 (101)
T 2bjd_A           19 RVYGLVQ-GVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEE-ALSKLLERIKQGPPAAEVEKVD   85 (101)
T ss_dssp             EEEEECS-SSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHH-HHHHHHHHHTTCSTTCEEEEEE
T ss_pred             EEEEeEC-CcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHH-HHHHHHHHHHhCCCccEEEEEE
Confidence            4888776 89999999999999999999988777778999999853 3555554444462335555443

>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1

Probab=84.76  E-value=3.6  Score=29.46  Aligned_cols=65  Identities=12%  Similarity=0.057  Sum_probs=49.7

Q ss_pred             EEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCc--hhHHHHHHhhhCCCCCCCcEEEec
Q 028409          120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI--SYDIVEFITDTWPAVISLSIFFSF  188 (209)
Q Consensus       120 ~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~--~~~i~~~L~~~~~gIp~~~I~~~d  188 (209)
                      .|+|.=. |+-..-....++.+++-.+.|...+++.-+|.+||+-  .+...++|. .  +=|...|+-++
T Consensus         7 ~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~-~--gP~~a~V~~v~   73 (88)
T 1ulr_A            7 LVKGRVQ-GVGYRAFAQKKALELGLSGYAENLPDGRVEVVAEGPKEALELFLHHLK-Q--GPRLARVEAVE   73 (88)
T ss_dssp             EEEEECS-SSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEESCHHHHHHHHHHHH-H--CSTTCEEEEEE
T ss_pred             EEEEeEC-CcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH-h--CCCCcEEEEEE
Confidence            5788766 8999999999999999999998777777899999985  445555554 2  43455665544

>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A

Probab=84.40  E-value=4  Score=29.45  Aligned_cols=67  Identities=13%  Similarity=0.048  Sum_probs=49.7

Q ss_pred             EEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEec
Q 028409          120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSF  188 (209)
Q Consensus       120 ~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~d  188 (209)
                      .|+|.-. |+-.......++.+++-.+.|...+++.-+|++||+-.. |.+|+.....+=|...|+-++
T Consensus         9 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~-v~~f~~~l~~gP~~a~V~~v~   75 (91)
T 1w2i_A            9 KIYGRVQ-GVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEER-VEALIGWAHQGPPLARVTRVE   75 (91)
T ss_dssp             EEEEECS-SSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHH-HHHHHHHTTTCSTTCEEEEEE
T ss_pred             EEEEEEC-CcCHHHHHHHHHHHcCCeEEEEECCCCCEEEEEEeCHHH-HHHHHHHHHhCCCCcEEEEEE
Confidence            5788776 899999999999999999999887777789999998543 555554433243445555544

>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}

Probab=83.98  E-value=0.39  Score=39.49  Aligned_cols=71  Identities=8%  Similarity=0.098  Sum_probs=50.3

Q ss_pred             CCCcEEEEEEeecCCeeEEEEeccCCC----CCCHHHHHHHHhhhcccceeeeeCCCC-CceEEEcCCchhHHHHHHhhh
Q 028409          101 ERQEVVIEKVVRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTE-KEQIDVQGDISYDIVEFITDT  175 (209)
Q Consensus       101 ~~~~V~I~~~~R~grK~VT~V~GLe~f----gidlk~lAK~lkkkfAcg~SV~k~~~~-~~eI~IQGD~~~~i~~~L~~~  175 (209)
                      ..+++.+.++.++.++ -|+|.+|...    .=++.-+.|.|..-+++.+++    ++ .+..+|+|.|....++-++..
T Consensus        17 kmP~~~v~~EG~gnG~-KTvi~Nf~dIak~L~R~p~hv~kyf~~ELGt~g~i----d~~~~rliinG~~~~~~i~~~L~~   91 (170)
T 2g2k_A           17 KMPRLIAKVEGKGNGI-KTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQF----DVKNDRYIVNGSHEANKLQDMLDG   91 (170)
T ss_dssp             CCCCCCCEEESCTTTC-EEECSSHHHHHHHHSSCCTTTHHHHHHHTTCCCEE----CTTTCCEEEEBCCCHHHHHHHHHH
T ss_pred             cCCCCeEEEeccCCcc-EEEEEcHHHHHHHhCCCHHHHHHHHHHHhCCceee----cCCCCEEEEEeeeCHHHHHHHHHH
Confidence            3667778888885432 4777776642    335666777888999999999    33 689999999877666555444


Q ss_pred             C
Q 028409          176 W  176 (209)
Q Consensus       176 ~  176 (209)
                      |
T Consensus        92 y   92 (170)
T 2g2k_A           92 F   92 (170)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A

Probab=83.71  E-value=4.3  Score=29.69  Aligned_cols=66  Identities=20%  Similarity=0.113  Sum_probs=49.4

Q ss_pred             EEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCc--hhHHHHHHhhhCCCCCCCcEEEec
Q 028409          120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI--SYDIVEFITDTWPAVISLSIFFSF  188 (209)
Q Consensus       120 ~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~--~~~i~~~L~~~~~gIp~~~I~~~d  188 (209)
                      .|+|.-. |+-..-....++++++-.+.|...+++.-+|++||+.  .+...++|...  +=|...|+-++
T Consensus        13 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~~~--~p~~a~V~~v~   80 (99)
T 2vh7_A           13 EIFGKVQ-GVFFRKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLETR--GSPKSHIDKAN   80 (99)
T ss_dssp             EEEEECS-SSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHHHT--CSTTCEEEEEE
T ss_pred             EEEEeeC-CcChHHHHHHHHHHcCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhc--CCCceEEEEEE
Confidence            4788776 8999999999999999999998777777899999985  34444455432  33455665544

>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1

Probab=83.50  E-value=4.4  Score=29.85  Aligned_cols=67  Identities=6%  Similarity=0.066  Sum_probs=50.0

Q ss_pred             EEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCc--hhHHHHHHhhhCCCCCCCcEEEecc
Q 028409          120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI--SYDIVEFITDTWPAVISLSIFFSFS  189 (209)
Q Consensus       120 ~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~--~~~i~~~L~~~~~gIp~~~I~~~dk  189 (209)
                      .|+|.-. |+-..-....++++++-.+.|...+++.-+|++||+.  .+...++|..+  +=|...|+-++.
T Consensus        16 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~~--gP~~a~V~~v~~   84 (102)
T 1urr_A           16 EIFGRVQ-GVFFRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLENN--RIPNAKVSKAEF   84 (102)
T ss_dssp             EEEEECS-SSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHC--CSTTCEEEEEEE
T ss_pred             EEEEeEC-CcChhHHHHHHHHHhCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhc--CCCccEEEEEEE
Confidence            4888776 8999999999999999999998877777899999985  34455555432  435555655543

>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1

Probab=81.82  E-value=1.1  Score=29.96  Aligned_cols=46  Identities=13%  Similarity=0.123  Sum_probs=37.0

Q ss_pred             eecCCeeEEEEeccCCC----CCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCC
Q 028409          111 VRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGD  163 (209)
Q Consensus       111 ~R~grK~VT~V~GLe~f----gidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD  163 (209)
                      .|-|+|  |+|.+|...    .=++.-+.|.|.+-+++.+++    + ++..+|+|.
T Consensus         3 ~~eG~k--Tvi~Nf~~Ia~~L~R~p~hv~ky~~~ELGt~g~i----d-~~rlii~G~   52 (52)
T 1k8b_A            3 LIEGNR--TIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNL----E-GGRLILQRR   52 (52)
T ss_dssp             EEETTE--EEECCHHHHHHHHHTCHHHHHHHHHHHHSSEEEE----E-TTEEEEECC
T ss_pred             EEEcCe--EEEECHHHHHHHHCCCHHHHHHHHHHHhCCCeee----c-CCEEEEeCC
Confidence            355777  999998763    357889999999999999999    2 678888883

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	209
d2if1a_	126	d.64.1.1 (A:) Eukaryotic translation initiation fa	9e-15
d1d1ra_	83	d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}	2e-10

>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: Eukaryotic translation initiation factor eIF-1 (SUI1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (160), Expect = 9e-15
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 96  KIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEK 155
            +       + I    RN RK +T V+G+           K   KKFA   +V++ P   
Sbjct: 35  LLPAGTEDYIHIRIQQRNGRKTLTTVQGIA-DDYDKKKLVKAFKKKFACNGTVIEHPEYG 93

Query: 156 EQIDVQGDISYDIVEFITD 174
           E I +QGD   +I +F+ +
Sbjct: 94  EVIQLQGDQRKNICQFLVE 112

>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]} Length = 83

class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: YciH
species: Escherichia coli [TaxId: 562]

 Score = 53.1 bits (128), Expect = 2e-10
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 114 KRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFIT 173
           K K + ++ G+DL   +L+  + +L KK   G +V  G      I++QGD    +   + 
Sbjct: 16  KGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKDG-----VIEIQGDKRDLLKSLLE 70

Query: 174 D 174
            
Sbjct: 71  A 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	209
d2if1a_	126	Eukaryotic translation initiation factor eIF-1 (SU	99.89
d1d1ra_	83	YciH {Escherichia coli [TaxId: 562]}	99.79
d1w2ia_	90	Acylphosphatase {Pyrococcus horikoshii [TaxId: 539	92.72
d1neea1	98	Translation initiation factor 2 beta, aIF2beta, N-	92.59
d1ulra_	87	Acylphosphatase {Thermus thermophilus [TaxId: 274]	92.21
d1urra_	97	Acylphosphatase 2 (Cg18505) {Fruit fly (Drosophila	88.55
d2acya_	98	Acylphosphatase {Cow (Bos taurus) [TaxId: 9913]}	83.56
d1apsa_	98	Acylphosphatase {Horse (Equus caballus) [TaxId: 97	82.6

>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: Eukaryotic translation initiation factor eIF-1 (SUI1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.9e-24  Score=168.89  Aligned_cols=88  Identities=25%  Similarity=0.317  Sum_probs=81.8

Q ss_pred             cccCCCCcEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhC
Q 028409           97 IKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW  176 (209)
Q Consensus        97 ~kK~~~~~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~  176 (209)
                      .+++..++|+|++++|+|||.||+|+||+ +++||++|||.|+++|||||||.+.++++++|+||||++++|.+||.++.
T Consensus        36 ~~~~~~~~I~I~~ekR~G~K~VT~I~Gl~-~~~dlk~laK~lKk~~acggSVk~~~~~~~~I~IQGD~r~~v~~~L~~~g  114 (126)
T d2if1a_          36 LPAGTEDYIHIRIQQRNGRKTLTTVQGIA-DDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIG  114 (126)
T ss_dssp             CSCSCTTCEECCCCCSSSSCCBCEEBSCC-TTSCHHHHHTTHHHHTCCCEEEECCTTTSSEEEESBCCHHHHHHHHHHHT
T ss_pred             CCCCCcceEEEEEEecCCCCCeEEEECCC-CcccHHHHHHHHHHhcCCCceEEeCCCCCcEEEEcccHHHHHHHHHHHcC
Confidence            44567889999999999999999999998 79999999999999999999999988888999999999999999999986


Q ss_pred             CCCCCCcEEE
Q 028409          177 PAVISLSIFF  186 (209)
Q Consensus       177 ~gIp~~~I~~  186 (209)
                       .+++++|++
T Consensus       115 -~~~k~~I~v  123 (126)
T d2if1a_         115 -LAKDDQLKV  123 (126)
T ss_dssp             -SSCTTTEEC
T ss_pred             -CCccccEEe
Confidence             778999986

>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: YciH
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=2.2e-20  Score=136.96  Aligned_cols=74  Identities=23%  Similarity=0.339  Sum_probs=65.5

Q ss_pred             CCcEEEEEEeec-CCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCC
Q 028409          102 RQEVVIEKVVRN-KRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVI  180 (209)
Q Consensus       102 ~~~V~I~~~~R~-grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp  180 (209)
                      ...|+|++++|+ ++|+||+|+||+.|++||++||+.|+++||||+||     ++++|+|||||++.|.+||.++  |++
T Consensus         3 ~~~Vri~~e~kgR~GK~VT~I~Gl~~~~~dlk~l~k~lKk~~gcGgsv-----k~~~I~lQGd~~~~v~~~L~~~--G~~   75 (83)
T d1d1ra_           3 DGVVRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAV-----KDGVIEIQGDKRDLLKSLLEAK--GMK   75 (83)
T ss_dssp             CCEEEEEECCCSSSSCCCEEEECCCSCHHHHHHHHHHHTTSSSSCCBC-----CSSCEEECSCCHHHHHHHHHHH--TCE
T ss_pred             CeEEEEEEEcCCCCCCeEEEEECCcCCHHHHHHHHHHHHHHhcCCEEE-----ECCEEEEeCcHHHHHHHHHHHc--CCc
Confidence            567899987764 34999999999999999999999999999999999     6789999999999999999986  555


Q ss_pred             CC
Q 028409          181 SL  182 (209)
Q Consensus       181 ~~  182 (209)
                      .+
T Consensus        76 ~K   77 (83)
T d1d1ra_          76 VK   77 (83)
T ss_dssp             EC
T ss_pred             ee
Confidence            43

>d1w2ia_ d.58.10.1 (A:) Acylphosphatase {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.72  E-value=0.22  Score=34.55  Aligned_cols=67  Identities=13%  Similarity=0.055  Sum_probs=52.1

Q ss_pred             EEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEec
Q 028409          120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSF  188 (209)
Q Consensus       120 ~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~d  188 (209)
                      .|+|.-. |+-....+...+.+++-.+.|...+++.-+|.+||+ .+.|.+|+...+.|=|...|+-++
T Consensus         8 ~V~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~-~~~i~~f~~~l~~gp~~a~V~~i~   74 (90)
T d1w2ia_           8 KIYGRVQ-GVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGD-EERVEALIGWAHQGPPLARVTRVE   74 (90)
T ss_dssp             EEEEECS-SSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEE-HHHHHHHHHHTTTCSTTCEEEEEE
T ss_pred             EEEEeEe-CcCChHHHHHHHHHcCCeEEEEECCCCCEEEEEECC-HHHHHHHHHHHHhCcCCcEEEEEE
Confidence            4667655 889999999999999999999888888899999998 577777776555454445555443

>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.59  E-value=0.031  Score=40.12  Aligned_cols=64  Identities=11%  Similarity=0.110  Sum_probs=48.7

Q ss_pred             CcEEEEEEeecCCeeEEEEeccCCC----CCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhC
Q 028409          103 QEVVIEKVVRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW  176 (209)
Q Consensus       103 ~~V~I~~~~R~grK~VT~V~GLe~f----gidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~  176 (209)
                      |+..+.++   |+|  |++.+|...    .-++.-+.|.|.+-+||.|++     .++..+|+|.+.....+-+..+|
T Consensus        28 P~~~v~~e---Gkk--Tii~Nf~~Ia~~L~R~p~hl~kfl~~ELgt~g~i-----~~~~lii~G~~~~~~i~~~l~~y   95 (98)
T d1neea1          28 PKAYSVIQ---GNR--TFIQNFREVADALNRDPQHLLKFLLRELGTAGNL-----EGGRAILQGKFTHFLINERIEDY   95 (98)
T ss_dssp             SCCCCCEE---TTE--EEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCC-----BTTTEEEESSCSSSHHHHHHHHH
T ss_pred             CCceEEEe---cce--EEEechHHHHHHHCCCHHHHHHHHHHHhCCceEE-----eCCEEEEEeeeCHHHHHHHHHHH
Confidence            44444444   655  888898864    568999999999999999999     24679999998877776665555

>d1ulra_ d.58.10.1 (A:) Acylphosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=92.21  E-value=0.27  Score=33.94  Aligned_cols=69  Identities=13%  Similarity=0.065  Sum_probs=53.8

Q ss_pred             EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409          119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFS  189 (209)
Q Consensus       119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk  189 (209)
                      -+|+|.-. |+-.....+..+.+++-.+.|...+++.-||.+||+- +.|.+|+...+.|=|...|+-++.
T Consensus         5 ~iV~G~VQ-GVGFR~~~~~~A~~~~l~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~l~~gp~~a~V~~v~~   73 (87)
T d1ulra_           5 ALVKGRVQ-GVGYRAFAQKKALELGLSGYAENLPDGRVEVVAEGPK-EALELFLHHLKQGPRLARVEAVEV   73 (87)
T ss_dssp             EEEEEECS-SSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEESCH-HHHHHHHHHHHHCSTTCEEEEEEE
T ss_pred             EEEEEEEe-CccCHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECH-HHHHHHHHHHhhCCCCcEEEEEEE
Confidence            36788665 8999999999999999999998888888999999983 556666655444645667776654

>d1urra_ d.58.10.1 (A:) Acylphosphatase 2 (Cg18505) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase 2 (Cg18505)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.55  E-value=1.4  Score=30.19  Aligned_cols=65  Identities=6%  Similarity=0.097  Sum_probs=48.3

Q ss_pred             EeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCc--hhHHHHHHhhhCCCCCCCcEEEec
Q 028409          121 VKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI--SYDIVEFITDTWPAVISLSIFFSF  188 (209)
Q Consensus       121 V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~--~~~i~~~L~~~~~gIp~~~I~~~d  188 (209)
                      |+|.-. |+-....++..+.+++..|.|...+++.-+|.+||+-  .+...++|...  +=|...|+-++
T Consensus        12 V~G~VQ-GVGFR~~~~~~A~~l~l~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~~--~p~~a~V~~i~   78 (97)
T d1urra_          12 IFGRVQ-GVFFRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLENN--RIPNAKVSKAE   78 (97)
T ss_dssp             EEEECS-SSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHC--CSTTCEEEEEE
T ss_pred             EEEEec-CcCChHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhhC--CCCCcEEEEEE
Confidence            777776 8999999999999999999998888888999999973  33344444331  33355565544

>d2acya_ d.58.10.1 (A:) Acylphosphatase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.56  E-value=2  Score=29.57  Aligned_cols=65  Identities=17%  Similarity=0.022  Sum_probs=49.9

Q ss_pred             EeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhC-CCCCCCcEEEe
Q 028409          121 VKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW-PAVISLSIFFS  187 (209)
Q Consensus       121 V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~-~gIp~~~I~~~  187 (209)
                      |+|--. |+-....++..+.+++=.|.|...+++.-+|.+||+ ...|.+|+.... .|=|...|+-+
T Consensus        13 V~G~VQ-GVGFR~~v~~~A~~l~L~G~V~N~~dG~Vei~~qG~-~~~i~~f~~~l~~~gp~~a~V~~i   78 (98)
T d2acya_          13 IFGKVQ-GVFFRKYTQAEGKKLGLVGWVQNTDQGTVQGQLQGP-ASKVRHMQEWLETKGSPKSHIDRA   78 (98)
T ss_dssp             EEEECS-SSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEE-HHHHHHHHHHHHHTCSTTCEEEEE
T ss_pred             EEEEEc-CcCchHHHHHHHHHcCCEEEEEECCCCeEEEEEEEC-HHHHHHHHHHHHhcCCCCcEEEEE
Confidence            667665 888999999999999999999888888899999998 556666665442 35555566544

>d1apsa_ d.58.10.1 (A:) Acylphosphatase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=82.60  E-value=0.6  Score=32.35  Aligned_cols=62  Identities=18%  Similarity=0.023  Sum_probs=47.7

Q ss_pred             EeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCC-CCCCCcE
Q 028409          121 VKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWP-AVISLSI  184 (209)
Q Consensus       121 V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~-gIp~~~I  184 (209)
                      |+|--. |+-....+...+.+++-.|.|...+++.-+|++||+ .+.|.+|+...+. |=|...|
T Consensus        13 V~G~VQ-GVGFR~~~~~~A~~~~l~G~V~N~~dG~Vei~~qG~-~~~i~~f~~~l~~~gp~~a~V   75 (98)
T d1apsa_          13 VFGRVQ-GVCFRMYAEDEARKIGVVGWVKNTSKGTVTGQVQGP-EEKVNSMKSWLSKVGSPSSRI   75 (98)
T ss_dssp             EECTTS-CCCCTTHHHHHHHHHTCEEEEECCTTCEEEEEEEEE-HHHHHHHHHSSSSCCCSSSCC
T ss_pred             EEEeEc-CcCcHHHHHHHHHHcCCeEEEEECCCCCEEEEEEcC-HHHHHHHHHHHHhcCCCCcEE
Confidence            667665 788888899999999999999877778899999997 5777888776554 3333333