Citrus Sinensis ID: 028410
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 209 | ||||||
| 449453660 | 228 | PREDICTED: uncharacterized protein LOC10 | 0.995 | 0.912 | 0.619 | 1e-73 | |
| 255553293 | 237 | conserved hypothetical protein [Ricinus | 0.990 | 0.873 | 0.608 | 1e-69 | |
| 297803418 | 231 | hypothetical protein ARALYDRAFT_492129 [ | 0.985 | 0.891 | 0.562 | 3e-65 | |
| 224124696 | 231 | predicted protein [Populus trichocarpa] | 0.976 | 0.883 | 0.597 | 4e-64 | |
| 124301140 | 231 | At2g16030 [Arabidopsis thaliana] | 0.985 | 0.891 | 0.543 | 1e-63 | |
| 15226670 | 231 | S-adenosyl-L-methionine-dependent methyl | 0.985 | 0.891 | 0.543 | 1e-63 | |
| 255563407 | 236 | conserved hypothetical protein [Ricinus | 0.990 | 0.877 | 0.608 | 2e-63 | |
| 225447419 | 231 | PREDICTED: uncharacterized protein LOC10 | 0.971 | 0.878 | 0.598 | 6e-62 | |
| 296081234 | 211 | unnamed protein product [Vitis vinifera] | 0.966 | 0.957 | 0.609 | 2e-60 | |
| 224145508 | 231 | predicted protein [Populus trichocarpa] | 0.976 | 0.883 | 0.601 | 9e-56 |
| >gi|449453660|ref|XP_004144574.1| PREDICTED: uncharacterized protein LOC101220368 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 130/210 (61%), Positives = 164/210 (78%), Gaps = 2/210 (0%)
Query: 1 MERHVEALLRKISYGAITIATFTLVMLMLQTPETCILENSPKST--KFPKSSCDSSHRQH 58
MERH+ L K+S+ +I IAT TL++L LQTP+TCI NSP KFPKSSCDS+ R+
Sbjct: 1 MERHIRRFLNKLSFASIAIATLTLIILFLQTPQTCIPPNSPSKPHLKFPKSSCDSTPREL 60
Query: 59 LPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIG 118
+ ++KKN RLWSS WK++++S+ HFF+ +Q LL NH+KV+CVSAGAGHEVMA + +G
Sbjct: 61 VSIDKKNKRLWSSNDWKKKLSSFIHFFQSIQDLGLLHNHTKVICVSAGAGHEVMALSQMG 120
Query: 119 VADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGG 178
V DVTGVEL+DS PLVSRADPHNLPFFD FD+AFTAHLAEALFPSRFV EMER V+ G
Sbjct: 121 VHDVTGVELIDSPPLVSRADPHNLPFFDHVFDLAFTAHLAEALFPSRFVSEMERAVRPDG 180
Query: 179 VCMVLMEECAGREIKQIVELFRTSSFTEAV 208
VC++++EEC E+K+IV LF S F ++
Sbjct: 181 VCVIVVEECGDYEVKEIVGLFMKSRFVNSI 210
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255553293|ref|XP_002517689.1| conserved hypothetical protein [Ricinus communis] gi|223543321|gb|EEF44853.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 129/212 (60%), Positives = 153/212 (72%), Gaps = 5/212 (2%)
Query: 1 MERHVEALLRKISYGAITIATFTLVMLMLQTPETCILENSPKST---KFPKSSCDSS--H 55
ME H+E L KIS IT++T L+ L +TP TC+ N+P + KFP S+CD S H
Sbjct: 1 METHIENFLNKISILCITVSTIILLHLYFETPATCVAPNTPITKPHLKFPTSTCDPSLKH 60
Query: 56 RQHLPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFN 115
R HLPL KKN RLWSS +W QV SY FF HLQ LL N+SKVLCVSAGAGHEVMA N
Sbjct: 61 RPHLPLSKKNQRLWSSNAWLSQVASYTTFFSHLQNLHLLHNNSKVLCVSAGAGHEVMALN 120
Query: 116 SIGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVK 175
IGV D+TGVEL+DSLPLV +ADP+NLPFFD FD+ F+AHL EALFP RFVGEMERTV+
Sbjct: 121 KIGVVDITGVELVDSLPLVRKADPNNLPFFDGVFDLGFSAHLMEALFPVRFVGEMERTVR 180
Query: 176 IGGVCMVLMEECAGREIKQIVELFRTSSFTEA 207
GGVC+V++ +C + +IV LFR S F A
Sbjct: 181 NGGVCIVVVGQCDDNGVSEIVRLFRKSKFVGA 212
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297803418|ref|XP_002869593.1| hypothetical protein ARALYDRAFT_492129 [Arabidopsis lyrata subsp. lyrata] gi|297315429|gb|EFH45852.1| hypothetical protein ARALYDRAFT_492129 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 117/208 (56%), Positives = 155/208 (74%), Gaps = 2/208 (0%)
Query: 1 MERHVEALLRKISYGAITIATFTLVMLMLQTPETCILENSPKS--TKFPKSSCDSSHRQH 58
MER+VE +L ++S I+I T +V+++LQTP+TCI +P T FP+S+CDSS RQH
Sbjct: 1 MERNVEKMLNRVSVVFISIGTVLMVIMILQTPKTCISPEAPSKPHTHFPRSTCDSSPRQH 60
Query: 59 LPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIG 118
LPL KKN R+WSSK+WK +++S++++F + L H+K LC+SAGAGH MA ++IG
Sbjct: 61 LPLPKKNARIWSSKAWKSRLSSFSNYFLRFRDLGFLQKHTKALCLSAGAGHAPMALSNIG 120
Query: 119 VADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGG 178
+ADVT VEL+DS+PLV RADPHNLPFFD FD AFTAHLAEALFP RFV EMERTV+ GG
Sbjct: 121 LADVTAVELVDSIPLVKRADPHNLPFFDGVFDFAFTAHLAEALFPWRFVEEMERTVRRGG 180
Query: 179 VCMVLMEECAGREIKQIVELFRTSSFTE 206
C+V ++EC G +++ I LF S +
Sbjct: 181 FCVVAVDECGGDDVRDIARLFHKSKVVD 208
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224124696|ref|XP_002319399.1| predicted protein [Populus trichocarpa] gi|222857775|gb|EEE95322.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 249 bits (637), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 126/211 (59%), Positives = 153/211 (72%), Gaps = 7/211 (3%)
Query: 1 MERHVEALLRKISYGAITIATFTLVMLMLQTPETCILENSPKST---KFPKSSCDSS-HR 56
ME+H+E L K+S ITIAT TL+ L L TPETCI N+P + KFP S+CD S +
Sbjct: 1 MEKHIENFLNKVSLVFITIATITLLYLYLHTPETCIPPNTPITKPHLKFPSSTCDPSLNH 60
Query: 57 QHLPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNS 116
+ KK +LWSSKSW QV+S+ FF+ L LL N +KVLCVSAGAGHEVMA N+
Sbjct: 61 PYTDPTKKRLKLWSSKSWLSQVSSFTIFFQSLN---LLNNKTKVLCVSAGAGHEVMALNN 117
Query: 117 IGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKI 176
+GV+DVTGVE++DSLPLV RADP+NLPFFD FD+AF+AHL EALFP R VGEMERTV+
Sbjct: 118 MGVSDVTGVEIVDSLPLVKRADPNNLPFFDGVFDLAFSAHLEEALFPLRIVGEMERTVRN 177
Query: 177 GGVCMVLMEECAGREIKQIVELFRTSSFTEA 207
GGVC+V ++EC G E+ I LFR S F A
Sbjct: 178 GGVCVVAVKECGGEEVDAIARLFRKSMFVGA 208
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|124301140|gb|ABN04822.1| At2g16030 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 113/208 (54%), Positives = 154/208 (74%), Gaps = 2/208 (0%)
Query: 1 MERHVEALLRKISYGAITIATFTLVMLMLQTPETCILENSPKS--TKFPKSSCDSSHRQH 58
MER+VE +L+++S ++I T +V+++LQTP+TCI +P T FP+S+CDSS RQH
Sbjct: 1 MERNVEKMLKRVSIVFLSIGTVLMVIMILQTPKTCISPEAPSKPHTHFPRSTCDSSPRQH 60
Query: 59 LPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIG 118
LPL KKN R+WSS +WK ++ S++ +F + + NH+K LC+SAGAGH +MA + IG
Sbjct: 61 LPLPKKNARIWSSGAWKSRLYSFSTYFLRFRDLGFIQNHTKALCLSAGAGHALMALSQIG 120
Query: 119 VADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGG 178
++DVT VEL+DS+PLV RADPHNLPFFD FD AFTAHLAEALFP +FV EMERTV+ GG
Sbjct: 121 LSDVTAVELVDSIPLVKRADPHNLPFFDGVFDFAFTAHLAEALFPWQFVEEMERTVRRGG 180
Query: 179 VCMVLMEECAGREIKQIVELFRTSSFTE 206
C+V ++EC G +++ I LF S +
Sbjct: 181 FCVVSVDECGGDDVRDIARLFHNSKVVD 208
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15226670|ref|NP_179201.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|4678200|gb|AAD26946.1| hypothetical protein [Arabidopsis thaliana] gi|30793983|gb|AAP40441.1| unknown protein [Arabidopsis thaliana] gi|110739046|dbj|BAF01441.1| hypothetical protein [Arabidopsis thaliana] gi|330251366|gb|AEC06460.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 113/208 (54%), Positives = 154/208 (74%), Gaps = 2/208 (0%)
Query: 1 MERHVEALLRKISYGAITIATFTLVMLMLQTPETCILENSPKS--TKFPKSSCDSSHRQH 58
MER+VE +L+++S ++I T +V+++LQTP+TCI +P T FP+S+CDSS RQH
Sbjct: 1 MERNVEKMLKRVSIVFLSIGTVLMVIMILQTPKTCISPEAPSKPHTHFPRSTCDSSPRQH 60
Query: 59 LPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIG 118
LPL KKN R+WSS +WK ++ S++ +F + + NH+K LC+SAGAGH +MA + IG
Sbjct: 61 LPLPKKNARIWSSGAWKSRLYSFSTYFLRFRDLGFIQNHTKALCLSAGAGHALMALSQIG 120
Query: 119 VADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGG 178
++DVT VEL+DS+PLV RADPHNLPFFD FD AFTAHLAEALFP +FV EMERTV+ GG
Sbjct: 121 LSDVTAVELVDSIPLVKRADPHNLPFFDGVFDFAFTAHLAEALFPWQFVEEMERTVRRGG 180
Query: 179 VCMVLMEECAGREIKQIVELFRTSSFTE 206
C+V ++EC G +++ I LF S +
Sbjct: 181 FCVVSVDECGGDDVRDIARLFHNSKVVD 208
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255563407|ref|XP_002522706.1| conserved hypothetical protein [Ricinus communis] gi|223538056|gb|EEF39668.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 129/212 (60%), Positives = 154/212 (72%), Gaps = 5/212 (2%)
Query: 1 MERHVEALLRKISYGAITIATFTLVMLMLQTPETCILENSPKST---KFPKSSCDSS--H 55
ME+H+E L KIS ITI+T L+ L +TP TC+ N+P + KFP S+CD S H
Sbjct: 1 MEKHIENFLNKISILCITISTIILLHLYFETPATCVAPNTPITKPHLKFPTSTCDPSLKH 60
Query: 56 RQHLPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFN 115
R LPL KKN RLWSS +W QV SY FF HLQ LL N+SKVLCVSAGAGHEVMA N
Sbjct: 61 RPLLPLSKKNQRLWSSNAWLSQVASYTTFFSHLQSLHLLHNNSKVLCVSAGAGHEVMALN 120
Query: 116 SIGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVK 175
+GV DV GVEL+DSLPLV +ADP+NLPFFD FD+ F+AHL EALFP RFVGE+ERTV+
Sbjct: 121 KMGVFDVAGVELVDSLPLVRKADPNNLPFFDGVFDLGFSAHLMEALFPVRFVGEIERTVR 180
Query: 176 IGGVCMVLMEECAGREIKQIVELFRTSSFTEA 207
GGVC+V++ EC+ E+ +IV LFR S F A
Sbjct: 181 NGGVCVVVVGECSDNEVSKIVGLFRKSKFVGA 212
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225447419|ref|XP_002281700.1| PREDICTED: uncharacterized protein LOC100243023 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 242 bits (618), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 128/214 (59%), Positives = 161/214 (75%), Gaps = 11/214 (5%)
Query: 1 MERHVEALLRKISYGAITIATFTLVMLMLQTPETCILENSPKST-------KFPKSSCDS 53
MERHV+ LL K+S ITIAT + L+LQTP+TCI P +T +FPKSSCDS
Sbjct: 1 MERHVQTLLNKLSVVCITIATIIFLFLILQTPQTCI----PTTTHPRVRLLRFPKSSCDS 56
Query: 54 SHRQHLPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMA 113
S R ++P KKN RLWS++ WK++V SYA FF+ L+ + LL NHSKVLCVSAGAGHEV A
Sbjct: 57 SRRDYVPFSKKNERLWSTRDWKKKVNSYAQFFRSLRDQRLLSNHSKVLCVSAGAGHEVAA 116
Query: 114 FNSIGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERT 173
+ +G DVTGVEL++S PLVSRADPHNLPFF AFD+ F+AHL EALFP+RFV EMERT
Sbjct: 117 VSEVGARDVTGVELVESPPLVSRADPHNLPFFYGAFDLVFSAHLDEALFPARFVAEMERT 176
Query: 174 VKIGGVCMVLMEECAGREIKQIVELFRTSSFTEA 207
V++ GVC+V++EEC G E++ I+ +F+ S F A
Sbjct: 177 VRVRGVCVVVVEECGGDEMRGILRMFKHSVFVSA 210
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081234|emb|CBI17978.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 125/205 (60%), Positives = 159/205 (77%), Gaps = 3/205 (1%)
Query: 1 MERHVEALLRKISYGAITIATFTLVMLMLQTPETCILENS-PKST--KFPKSSCDSSHRQ 57
MERHV+ LL K+S ITIAT + L+LQTP+TCI + P+ +FPKSSCDSS R
Sbjct: 1 MERHVQTLLNKLSVVCITIATIIFLFLILQTPQTCIPTTTHPRVRLLRFPKSSCDSSRRD 60
Query: 58 HLPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI 117
++P KKN RLWS++ WK++V SYA FF+ L+ + LL NHSKVLCVSAGAGHEV A + +
Sbjct: 61 YVPFSKKNERLWSTRDWKKKVNSYAQFFRSLRDQRLLSNHSKVLCVSAGAGHEVAAVSEV 120
Query: 118 GVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIG 177
G DVTGVEL++S PLVSRADPHNLPFF AFD+ F+AHL EALFP+RFV EMERTV++
Sbjct: 121 GARDVTGVELVESPPLVSRADPHNLPFFYGAFDLVFSAHLDEALFPARFVAEMERTVRVR 180
Query: 178 GVCMVLMEECAGREIKQIVELFRTS 202
GVC+V++EEC G E++ I+ +F+ S
Sbjct: 181 GVCVVVVEECGGDEMRGILRMFKHS 205
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224145508|ref|XP_002325668.1| predicted protein [Populus trichocarpa] gi|222862543|gb|EEF00050.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 222 bits (565), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 127/211 (60%), Positives = 157/211 (74%), Gaps = 7/211 (3%)
Query: 1 MERHVEALLRKISYGAITIATFTLVMLMLQTPETCILENSPKST---KFPKSSCDSS-HR 56
ME+H+E L K+S ITIAT TL+ L LQTP+TCI N+P + KFP S+CD S +
Sbjct: 1 MEKHIEKFLNKVSLVFITIATITLLYLSLQTPQTCIPPNTPTTKPHLKFPSSTCDPSLNH 60
Query: 57 QHLPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNS 116
++ KK +LWSSKSW QV+S+ FF+ L +LL N +KVLCVSAGAGHEVMA N+
Sbjct: 61 PYMDPTKKRLKLWSSKSWLSQVSSFTTFFQSL---NLLNNETKVLCVSAGAGHEVMALNN 117
Query: 117 IGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKI 176
+GV+DVTGVE++DSLPLV RADP+NLPFFD F +AF+AHL EALFP RF GEMERTV+
Sbjct: 118 MGVSDVTGVEIVDSLPLVKRADPNNLPFFDGVFYLAFSAHLEEALFPLRFAGEMERTVRN 177
Query: 177 GGVCMVLMEECAGREIKQIVELFRTSSFTEA 207
GGVC+V++EEC G E+ IV LFR S F A
Sbjct: 178 GGVCVVVVEECGGVEVDAIVGLFRKSMFVGA 208
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 209 | ||||||
| TAIR|locus:2052936 | 231 | AT2G16030 [Arabidopsis thalian | 0.985 | 0.891 | 0.543 | 6.4e-60 | |
| TAIR|locus:2116412 | 208 | AT4G26730 [Arabidopsis thalian | 0.712 | 0.716 | 0.550 | 8.6e-47 | |
| TAIR|locus:504955468 | 247 | AT4G24805 [Arabidopsis thalian | 0.722 | 0.611 | 0.370 | 1.4e-23 | |
| TAIR|locus:2023986 | 239 | AT1G24480 [Arabidopsis thalian | 0.899 | 0.786 | 0.317 | 3.4e-22 | |
| TAIR|locus:2149790 | 513 | AT5G01710 [Arabidopsis thalian | 0.918 | 0.374 | 0.274 | 5e-13 | |
| TAIR|locus:2084021 | 466 | AT3G53400 "AT3G53400" [Arabido | 0.602 | 0.270 | 0.269 | 4.7e-06 | |
| TAIR|locus:2143478 | 475 | CPUORF47 "conserved peptide up | 0.578 | 0.254 | 0.295 | 6.4e-06 |
| TAIR|locus:2052936 AT2G16030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 113/208 (54%), Positives = 154/208 (74%)
Query: 1 MERHVEALLRKISYGAITIATFTLVMLMLQTPETCILENSPKS--TKFPKSSCDSSHRQH 58
MER+VE +L+++S ++I T +V+++LQTP+TCI +P T FP+S+CDSS RQH
Sbjct: 1 MERNVEKMLKRVSIVFLSIGTVLMVIMILQTPKTCISPEAPSKPHTHFPRSTCDSSPRQH 60
Query: 59 LPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIG 118
LPL KKN R+WSS +WK ++ S++ +F + + NH+K LC+SAGAGH +MA + IG
Sbjct: 61 LPLPKKNARIWSSGAWKSRLYSFSTYFLRFRDLGFIQNHTKALCLSAGAGHALMALSQIG 120
Query: 119 VADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGG 178
++DVT VEL+DS+PLV RADPHNLPFFD FD AFTAHLAEALFP +FV EMERTV+ GG
Sbjct: 121 LSDVTAVELVDSIPLVKRADPHNLPFFDGVFDFAFTAHLAEALFPWQFVEEMERTVRRGG 180
Query: 179 VCMVLMEECAGREIKQIVELFRTSSFTE 206
C+V ++EC G +++ I LF S +
Sbjct: 181 FCVVSVDECGGDDVRDIARLFHNSKVVD 208
|
|
| TAIR|locus:2116412 AT4G26730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 459 (166.6 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 82/149 (55%), Positives = 108/149 (72%)
Query: 58 HLPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI 117
HLPL KKN R+W S +WK +++S++ +F + + NH+K LC+S GAGH MA + I
Sbjct: 25 HLPLPKKNARIWFSGAWKSRLSSFSTYFLRFRDLGFIQNHTKALCLSDGAGHAPMALSQI 84
Query: 118 GVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIG 177
G++DVT VEL+DS+PLV RADPHNLPFFD FD FTAHLAEALFP RFV EMERTV+ G
Sbjct: 85 GLSDVTAVELVDSIPLVKRADPHNLPFFDRVFDFVFTAHLAEALFPWRFVEEMERTVRRG 144
Query: 178 GVCMVLMEECAGREIKQIVELFRTSSFTE 206
G C+V ++EC+G +++ I F S +
Sbjct: 145 GFCVVAVDECSGDDVRDIARFFHNSKIVD 173
|
|
| TAIR|locus:504955468 AT4G24805 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 60/162 (37%), Positives = 90/162 (55%)
Query: 55 HRQHLPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAF 114
H+ + K ++W+++ W ++V ++ FF+ L + LL N SK L + A G EV A
Sbjct: 67 HQLNKTQNPKLRKVWTTRDWDRKVRVFSTFFRRLSDRGLLSNQSKALSIGARVGQEVAAL 126
Query: 115 NSIGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTV 174
IGV D G++L+ PLV + D H PF +E FD F+ AL+P +FVGE+ERT+
Sbjct: 127 RLIGVEDSVGIDLVPRPPLVVKGDFHAQPFDEETFDFEFSNVFDHALYPEKFVGEIERTL 186
Query: 175 KIGGVCMVLMEECAGR----------EIKQIVELFRTSSFTE 206
K GGVC VL +G+ +K +V+LF+ S E
Sbjct: 187 KPGGVC-VLHVSISGKTDKYSANDLLSVKPLVKLFKRSKVVE 227
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| TAIR|locus:2023986 AT1G24480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 62/195 (31%), Positives = 100/195 (51%)
Query: 17 ITIATFTLVMLMLQTPETCILENSPKSTKFPKSSCDSSHRQ-HLPLEKKNHRLWSSKSWK 75
+T+ + L+ PE ++ P T + RQ + L + +W ++ W
Sbjct: 17 LTLPLILFFSIQLRKPEKELIRIRPGYTSYDYYI----QRQLNKTLNPRLRTIWMTRDWD 72
Query: 76 QQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVS 135
+++ ++ FF+ L+ + LL SK LC+ A G EV A +GV D G++L+ PLV
Sbjct: 73 RKIKVFSRFFQDLKRQGLLSKDSKCLCLGARVGQEVEALKRVGVNDSVGMDLVPYPPLVV 132
Query: 136 RADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQI 195
+ D H+ PF DE FD F+ AL+P +FVGE+ERT++ GG+C VL + R K
Sbjct: 133 KGDFHHQPFDDETFDFEFSNVFDHALYPDKFVGEIERTLRPGGLC-VLHVALSTRSDKYS 191
Query: 196 V-ELFRTSSFTEAVR 209
+LF + + R
Sbjct: 192 ANDLFSVEALVKLFR 206
|
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| TAIR|locus:2149790 AT5G01710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 180 (68.4 bits), Expect = 5.0e-13, P = 5.0e-13
Identities = 56/204 (27%), Positives = 90/204 (44%)
Query: 8 LLRKISYGAITIAT-FTLVMLMLQTPETC-----ILENSPKSTKFPKSSC--DSSHRQHL 59
++R + +G + I F V+ + T E+C + P++ F S SS +
Sbjct: 15 MVRVLLFGVLIIVVRFAYVVTI--TGESCNRGDFCFFSLPENLNFVISGAASGSSAIDAI 72
Query: 60 PLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGV 119
L++++ W + V Y+ F+ L L SK LCV G EV + IGV
Sbjct: 73 RSTSPGDDLYTTRDWIKSVQFYSSIFQDLIADGYLSPESKTLCVETAIGQEVHSLREIGV 132
Query: 120 ADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTA--HLAEALFPSRFVGEMERTVKIG 177
+ G+ S PLV R + H +PF D AFD F+ L ++L F E+ RT+K
Sbjct: 133 KNSVGISKKASRPLVVRGEGHAIPFEDNAFDFVFSGGDRLGKSLKQLEFADEITRTLKPE 192
Query: 178 GVCMVLMEECAGREIKQIVELFRT 201
G +V + ++LF +
Sbjct: 193 GFAVVHVGATDTYSFNSFLDLFNS 216
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| TAIR|locus:2084021 AT3G53400 "AT3G53400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 129 (50.5 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 34/126 (26%), Positives = 56/126 (44%)
Query: 71 SKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS 130
S K + + L G +LL N SK LC+ + V+A N G++DV+ +
Sbjct: 92 SDKCKDNIYLTTQVVRELTGMNLLSNDSKALCIGRRSVSAVLAMNRQGISDVSVAYMPPV 151
Query: 131 LPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGR 190
R L + D +F F+ L P+ V E+ER +K GG +L+ +G
Sbjct: 152 FAFKHRKFTSELHYEDASFGFVFSMDLESVAVPASLVYEIERILKPGGTGAMLVGTTSGS 211
Query: 191 EIKQIV 196
+ ++V
Sbjct: 212 DSNELV 217
|
|
| TAIR|locus:2143478 CPUORF47 "conserved peptide upstream open reading frame 47" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 128 (50.1 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 36/122 (29%), Positives = 52/122 (42%)
Query: 82 AHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADPHN 141
A L G LL +K+LC+ G+ V F +G + V GV SR +
Sbjct: 114 ADLVDELMGLKLLHYDAKILCIGQGSDSAVSGFKEMGFSVVQGVPKHPLFSFFSRKHVNE 173
Query: 142 LPFF-DEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200
L D++FD + P+ V EMER +K GG VL+ A R +K + +
Sbjct: 174 LELSGDKSFDFVLCGDVDHVASPALLVLEMERVLKPGGTGAVLVSTNANRLVKSVTSGLK 233
Query: 201 TS 202
S
Sbjct: 234 QS 235
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.133 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 209 209 0.00079 112 3 11 22 0.44 32
31 0.48 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 7
No. of states in DFA: 608 (65 KB)
Total size of DFA: 178 KB (2103 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.81u 0.10s 18.91t Elapsed: 00:00:01
Total cpu time: 18.81u 0.10s 18.91t Elapsed: 00:00:01
Start: Fri May 10 19:12:37 2013 End: Fri May 10 19:12:38 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh2_kg.7__1562__AT2G16030.1 | annotation not avaliable (231 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 209 | |||
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 9e-09 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 0.001 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 0.002 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 9e-09
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 101 LCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSR---------ADPHNLPFFDEAFDV 151
L V G G A G A VTGV+L + ++R D +LPF DE+FDV
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAPRKFVVGDAEDLPFPDESFDV 60
Query: 152 AFTAHLAEALF-PSRFVGEMERTVKIGGVCMV 182
++ + L P R + E+ R +K GG ++
Sbjct: 61 VVSSLVLHHLPDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.001
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 99 KVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSR---------------ADPHNLP 143
+VL + G G +A S A VTGV++ ++R D LP
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP 60
Query: 144 FF-DEAFDVAFTAHLAEALFPS--RFVGEMERTVKIGGV 179
DE+FDV + L RF+ E R +K GGV
Sbjct: 61 PEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGV 99
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.002
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 136 RADPHNLPFFDEAFDVAFT----AHLAEALFPSRFVGEMERTVKIGGVCMVL 183
R D LPF D +FD + HL + P+R + E+ R ++ GG +VL
Sbjct: 75 RGDADGLPFPDGSFDAVRSDRVLQHLED---PARALAEIARVLRPGGRVVVL 123
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Length = 241 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 209 | |||
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.84 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.78 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.76 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.75 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.73 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.72 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.71 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.71 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.68 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.67 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.67 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.66 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.66 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.66 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.65 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.65 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.64 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.64 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.63 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.62 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.61 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.61 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.6 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.59 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.59 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.58 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.58 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.58 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.57 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.57 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.57 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.56 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.55 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.54 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.54 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.53 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.53 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.52 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.51 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.51 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.51 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.49 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.49 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.49 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.49 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.48 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.48 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.47 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.47 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.47 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.46 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.45 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.44 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.44 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.44 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.43 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.43 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.42 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.41 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.41 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.41 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.41 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.39 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.38 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.38 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.38 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.37 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.37 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.36 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.36 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.35 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.34 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.34 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.33 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.31 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.31 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.31 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.29 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.29 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.28 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.28 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.28 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.28 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.27 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.27 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.26 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.25 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.25 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.24 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.24 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.24 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.23 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.23 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.23 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.21 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.2 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.2 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.19 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.19 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.17 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.17 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.17 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.16 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.16 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.16 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.15 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.15 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.15 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.14 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.12 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.11 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.1 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.1 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.09 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.09 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.08 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.08 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.08 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.08 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.07 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.06 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.05 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.03 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.03 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.03 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.02 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.01 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.01 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.01 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.98 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.97 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.96 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.95 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.91 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.89 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.89 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.88 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.87 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.87 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.86 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.85 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.85 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.84 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.83 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.8 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.79 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.79 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.79 | |
| PLN02366 | 308 | spermidine synthase | 98.79 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.78 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.78 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.77 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.77 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.75 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.75 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.75 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.75 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.74 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.74 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.72 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.66 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.65 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.63 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.61 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.57 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.57 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.56 | |
| PLN02476 | 278 | O-methyltransferase | 98.54 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.53 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.52 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.52 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.5 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.48 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.48 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.48 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.47 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.46 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.45 | |
| PLN02823 | 336 | spermine synthase | 98.44 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.43 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.42 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.4 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.39 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.38 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.36 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.34 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.34 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.33 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.32 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.31 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.3 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.29 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.28 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.28 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.26 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.26 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 98.24 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 98.23 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.17 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.16 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.15 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.15 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.15 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.13 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.12 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.11 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.1 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.1 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.1 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.09 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.08 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.08 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.07 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.06 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.04 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.99 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.98 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.95 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.95 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.93 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.89 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.88 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.87 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.85 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.83 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.82 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.76 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.73 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.7 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 97.7 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.66 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.61 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.61 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.59 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.58 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.57 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.53 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.49 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.48 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.39 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 97.33 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.29 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.29 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.27 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.15 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.1 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.09 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.88 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 96.83 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 96.82 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 96.78 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.78 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.62 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 96.62 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 96.6 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 96.56 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 96.53 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 96.52 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.33 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 96.17 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 96.13 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.11 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.95 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 95.89 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 95.87 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.53 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 95.45 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 95.44 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 95.4 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 95.25 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.14 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 95.12 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.08 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.96 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 94.79 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 94.4 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 94.38 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 94.35 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.26 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 94.16 | |
| PHA01634 | 156 | hypothetical protein | 94.04 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 93.87 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 93.72 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 93.51 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 93.41 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 93.37 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 93.31 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 93.21 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 93.2 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 93.17 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 93.15 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 93.14 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 93.13 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 93.05 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 92.91 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 92.8 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 92.79 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 92.38 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 92.18 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 92.15 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 91.6 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 91.38 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 91.33 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 90.81 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 90.69 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 89.92 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 89.71 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 89.23 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 89.08 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 89.05 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 88.76 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 88.65 | |
| PRK13699 | 227 | putative methylase; Provisional | 86.96 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 86.96 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 86.85 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 86.72 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 86.62 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 86.33 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 85.83 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 85.42 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 85.2 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 84.95 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 84.63 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 84.58 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 84.47 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 84.47 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 83.82 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 83.77 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 83.32 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 83.17 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 82.92 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 82.89 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 82.77 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 82.59 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 81.91 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 81.66 |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.4e-21 Score=151.33 Aligned_cols=94 Identities=28% Similarity=0.386 Sum_probs=84.9
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc---------------EEEcCCCCCCCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL---------------VSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~---------------~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
...++.+|||+|||||..+..+++ .|.++|+|+|+|+.|++ ++++|++++||+|++||++.+++
T Consensus 48 ~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~f 127 (238)
T COG2226 48 GIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISF 127 (238)
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeee
Confidence 445899999999999999999999 57789999999999663 78999999999999999999998
Q ss_pred chhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 157 LAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 157 ~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
..+.+ |+.++|+|+.|+|||||++++..-.
T Consensus 128 glrnv~d~~~aL~E~~RVlKpgG~~~vle~~ 158 (238)
T COG2226 128 GLRNVTDIDKALKEMYRVLKPGGRLLVLEFS 158 (238)
T ss_pred hhhcCCCHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 88888 9999999999999999987776544
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-19 Score=143.26 Aligned_cols=94 Identities=26% Similarity=0.320 Sum_probs=70.8
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCCc---------------EEEcCCCCCCCCCCceeeEEccc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPL---------------VSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~~---------------~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
..++.+|||+|||||..+..+++. +.++|+|+|+|+.|++ ++++|++++|+++++||+|++..
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 478899999999999999999883 3579999999999663 88999999999999999999988
Q ss_pred chhhh-CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 157 LAEAL-FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 157 ~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
..+.+ |+.+.++|++|+|||||+++++....
T Consensus 125 glrn~~d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 125 GLRNFPDRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp -GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred hHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 77777 99999999999999999998876554
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.7e-19 Score=120.42 Aligned_cols=82 Identities=30% Similarity=0.522 Sum_probs=71.6
Q ss_pred EEEcCCCChhHHHHHhcCCceEEEecCCCCCC------------cEEEcCCCCCCCCCCceeeEEcccchhhh-CHHHHH
Q 028410 101 LCVSAGAGHEVMAFNSIGVADVTGVELMDSLP------------LVSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSRFV 167 (209)
Q Consensus 101 LDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~------------~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l 167 (209)
||+|||+|..+..+++.+..+++++|++++++ .+.++|++++|+++++||+|++.++.++. ++.+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l 80 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAAL 80 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHHH
Confidence 89999999999999998556999999999844 28999999999999999999999999988 899999
Q ss_pred HHHHHhcccCcEEEE
Q 028410 168 GEMERTVKIGGVCMV 182 (209)
Q Consensus 168 ~~~~r~LkpgG~lil 182 (209)
+++.|+|||||++++
T Consensus 81 ~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 81 REIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHEEEEEEEEE
T ss_pred HHHHHHcCcCeEEeC
Confidence 999999999999875
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=136.68 Aligned_cols=94 Identities=21% Similarity=0.194 Sum_probs=81.9
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCCC------------------cEEEcCCCCCCCCCCceeeE
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSLP------------------LVSRADPHNLPFFDEAFDVA 152 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~~------------------~~~~~d~~~~~~~~~~fD~i 152 (209)
.+.++.+|||+|||+|..+..+++. + .++|+|+|+|++|+ .++++|++++|+++++||+|
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V 149 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAI 149 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEE
Confidence 4477899999999999999998874 3 46999999998754 36789999999999999999
Q ss_pred Ecccchhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 153 FTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 153 ~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+++...++. ++..+++|+.|+|||||++++....
T Consensus 150 ~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 150 TMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred EEecccccCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 998888877 9999999999999999999887543
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-17 Score=133.09 Aligned_cols=116 Identities=10% Similarity=0.063 Sum_probs=91.1
Q ss_pred cCchhHhhHhHHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC--------cEEEcCC
Q 028410 69 WSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP--------LVSRADP 139 (209)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~--------~~~~~d~ 139 (209)
|....|.+...........+.......++.+|||+|||+|..+..+++. +..+|+|+|+|+.++ +++++|+
T Consensus 2 w~~~~y~~~~~~~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~ 81 (255)
T PRK14103 2 WDPDVYLAFADHRGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDV 81 (255)
T ss_pred CCHHHHHHHHhHhhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcCh
Confidence 4444554444433333344444445578899999999999999999885 446999999999865 4788999
Q ss_pred CCCCCCCCceeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 140 HNLPFFDEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 140 ~~~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
.+++ ++++||+|+++.+.+++ ++.++++++.++|||||.+++.+.
T Consensus 82 ~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 82 RDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred hhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 8875 57899999999998888 899999999999999999988753
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.3e-17 Score=134.49 Aligned_cols=90 Identities=19% Similarity=0.263 Sum_probs=79.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcccch
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
.++.+|||||||+|..+..+++.+. +|+|+|++++++ .++++|++++++++++||+|++.++.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4677999999999999999998764 999999998643 36777888888888999999999999
Q ss_pred hhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 159 EAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 159 ~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+|+ ++..+++++.++|||||.+++.+.
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 999 999999999999999999998863
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-16 Score=128.95 Aligned_cols=91 Identities=23% Similarity=0.278 Sum_probs=80.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------cEEEcCCCCCCCCCCceeeEEcccchhhh-CH
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------LVSRADPHNLPFFDEAFDVAFTAHLAEAL-FP 163 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~ 163 (209)
.++.+|||+|||+|..+..+++.+ .+++++|+|+.++ .++++|++++++++++||+|+++...++. ++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~ 119 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNL 119 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCH
Confidence 467899999999999999998876 4999999999855 47899999999999999999998877777 99
Q ss_pred HHHHHHHHHhcccCcEEEEEEec
Q 028410 164 SRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 164 ~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
..++.++.++|||||.+++....
T Consensus 120 ~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 120 STALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred HHHHHHHHHHcCCCeEEEEEeCC
Confidence 99999999999999998887644
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=134.75 Aligned_cols=91 Identities=24% Similarity=0.319 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEcccch
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
.++.+|||+|||+|..+..+++....+|+|+|+|+.+ +.++++|+.++|+++++||+|++....
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 6788999999999999999998422499999999863 347889999999999999999998888
Q ss_pred hhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 159 EAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 159 ~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+|+ ++.++++++.|+|||||.++++..
T Consensus 197 ~h~~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 197 EHMPDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 888 899999999999999999998753
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-17 Score=129.53 Aligned_cols=91 Identities=23% Similarity=0.314 Sum_probs=78.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcccchhh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~~~~~~ 160 (209)
-++.+|||+|||.|.++..+|+.|. +|+|+|+++++++ +.+..++++....++||+|+|..+.+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 4899999999999999999999994 9999999999776 334444444444589999999999999
Q ss_pred h-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 161 L-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 161 ~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
. +|..+++++.+.+||||.+++.+-.
T Consensus 137 v~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 137 VPDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 9 9999999999999999998777654
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.7e-16 Score=124.72 Aligned_cols=94 Identities=21% Similarity=0.267 Sum_probs=80.5
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.++++.+|||+|||+|..+..+++. +.++|+|+|+++.++ +++.+|+.++++++++||+|++.
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 121 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIG 121 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEe
Confidence 4578899999999999999999873 346999999997743 47889998888888999999998
Q ss_pred cchhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 156 ~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
...++. ++.++++++.++|||||++++....
T Consensus 122 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 122 FGLRNVPDYMQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred cccccCCCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 777777 8899999999999999998876543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.3e-16 Score=123.49 Aligned_cols=93 Identities=23% Similarity=0.266 Sum_probs=78.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-------EEEcCCCCCCCCCCceeeEEcccchhhh-CHHHH
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-------VSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSRF 166 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-------~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~~~ 166 (209)
.++.+|||+|||+|..+..+++....+|+|+|+|++|++ ++++|++++|+++++||+|++....++. ++.++
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~ 129 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKV 129 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChhhccCCHHHH
Confidence 457899999999999999998862249999999999775 6789999999999999999999888777 99999
Q ss_pred HHHHHHhcccCcEEEEEEecCC
Q 028410 167 VGEMERTVKIGGVCMVLMEECA 188 (209)
Q Consensus 167 l~~~~r~LkpgG~lil~~~~~~ 188 (209)
++|+.|+|||. ..++.+..++
T Consensus 130 l~e~~RvLkp~-~~ile~~~p~ 150 (226)
T PRK05785 130 IAEFTRVSRKQ-VGFIAMGKPD 150 (226)
T ss_pred HHHHHHHhcCc-eEEEEeCCCC
Confidence 99999999994 3344444443
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-16 Score=120.59 Aligned_cols=93 Identities=28% Similarity=0.434 Sum_probs=79.9
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-----EEEcCCCCCCCCCCceeeEEcccchhhh-CHHHHH
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-----VSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSRFV 167 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-----~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l 167 (209)
..++.+|||+|||+|.++..+++.|. +++|+|+++.+++ ....+....+.++++||+|+|+++.+|+ ++..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l 98 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPEEFL 98 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHHhhcccHHHHH
Confidence 48899999999999999999988887 9999999987652 2233333455678999999999999999 999999
Q ss_pred HHHHHhcccCcEEEEEEecC
Q 028410 168 GEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 168 ~~~~r~LkpgG~lil~~~~~ 187 (209)
+++.++|||||++++.+...
T Consensus 99 ~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 99 KELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HHHHHCEEEEEEEEEEEEBT
T ss_pred HHHHHhcCCCCEEEEEEcCC
Confidence 99999999999999998764
|
... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.5e-16 Score=129.10 Aligned_cols=110 Identities=16% Similarity=0.214 Sum_probs=89.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEcccch
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
.++.+|||+|||+|.++..++..+...|+|+|+|+.+ +.++.+|++++|+ +++||+|+|..+.
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 4578999999999999999999766689999998842 3477888888988 8899999999888
Q ss_pred hhh-CHHHHHHHHHHhcccCcEEEEEEecC---C------------------cccHHHHHHHhcccccc
Q 028410 159 EAL-FPSRFVGEMERTVKIGGVCMVLMEEC---A------------------GREIKQIVELFRTSSFT 205 (209)
Q Consensus 159 ~~~-~~~~~l~~~~r~LkpgG~lil~~~~~---~------------------~~~~~~~~~l~~~~~~~ 205 (209)
+|. ++..+++++++.|||||.+++..-.. . ..+...+.+++.++||.
T Consensus 200 ~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~ 268 (322)
T PRK15068 200 YHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFK 268 (322)
T ss_pred hccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCc
Confidence 888 99999999999999999998763210 0 01445677888888884
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.8e-16 Score=125.86 Aligned_cols=116 Identities=18% Similarity=0.197 Sum_probs=88.0
Q ss_pred cCchhHhhHhHHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC----------cEEEc
Q 028410 69 WSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP----------LVSRA 137 (209)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~----------~~~~~ 137 (209)
|....+.+...........+.......++.+|||+|||+|.++..+++. +..+|+|+|+|+.++ .+..+
T Consensus 4 w~~~~Y~~~~~~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~ 83 (258)
T PRK01683 4 WNPSLYLKFEDERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEA 83 (258)
T ss_pred CCHHHHHHHHHHhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEEC
Confidence 4444443333322223333444445578899999999999999999884 556999999998744 47788
Q ss_pred CCCCCCCCCCceeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 138 DPHNLPFFDEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 138 d~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
|+.++. ++++||+|+++...+++ ++..+++++.++|||||.+++.+.
T Consensus 84 d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 84 DIASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred chhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 887765 45699999999888888 899999999999999999888753
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=126.67 Aligned_cols=112 Identities=13% Similarity=0.172 Sum_probs=88.7
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcccc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
..++.+|||+|||+|.++..++..+...|+|+|+|+.++ .+..+++++++. .++||+|+|..+
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gv 197 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGV 197 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcch
Confidence 356789999999999999999887666899999998643 245667777775 358999999998
Q ss_pred hhhh-CHHHHHHHHHHhcccCcEEEEEEecCC---------------------cccHHHHHHHhccccccc
Q 028410 158 AEAL-FPSRFVGEMERTVKIGGVCMVLMEECA---------------------GREIKQIVELFRTSSFTE 206 (209)
Q Consensus 158 ~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~---------------------~~~~~~~~~l~~~~~~~~ 206 (209)
.+|. ++..++++++++|||||.+++.+...+ ..+...+...++++||..
T Consensus 198 L~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~ 268 (314)
T TIGR00452 198 LYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFEN 268 (314)
T ss_pred hhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeE
Confidence 8888 999999999999999999998642210 013456777888888854
|
Known examples to date are restricted to the proteobacteria. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=120.71 Aligned_cols=95 Identities=23% Similarity=0.199 Sum_probs=80.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CC------ceEEEecCCCCCCc------------------EEEcCCCCCCCCCC
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GV------ADVTGVELMDSLPL------------------VSRADPHNLPFFDE 147 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~------~~v~~vD~s~~~~~------------------~~~~d~~~~~~~~~ 147 (209)
...+++++||++||||..+..+.+. +. ++|+..|+|+.|+. |+.+|++++||+++
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~ 176 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDD 176 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCC
Confidence 3467899999999999999999873 32 69999999999663 88999999999999
Q ss_pred ceeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 148 AFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 148 ~fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
+||...+..-.... ++++.++|++|+|||||++.......
T Consensus 177 s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred cceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 99999887544434 89999999999999999988665543
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-15 Score=123.08 Aligned_cols=93 Identities=20% Similarity=0.234 Sum_probs=78.9
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-------------CcEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------PLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~-------------~~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
.++++.+|||+|||+|..+..+++....+|+|+|+|+.+ +.+..+|+.+.++++++||+|++.....
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAIL 128 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHH
Confidence 568899999999999999999987422499999999864 3477899988899999999999976655
Q ss_pred hh---CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 160 AL---FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 160 ~~---~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
|. ++..+++++.++|||||.+++...
T Consensus 129 h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 129 HLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 54 678999999999999999988754
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=124.52 Aligned_cols=91 Identities=13% Similarity=0.244 Sum_probs=78.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------------cEEEcCCCCCC-CCCCceeeEEcccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------------LVSRADPHNLP-FFDEAFDVAFTAHL 157 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~-~~~~~fD~i~~~~~ 157 (209)
.++.+|||+|||+|..+..+++.+. +|+++|+|++++ .++++|+.+++ +++++||+|+++.+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 5678999999999999999999875 999999998754 36677877763 56789999999999
Q ss_pred hhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 158 AEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 158 ~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.+++ ++..++.++.++|||||.+++.+..
T Consensus 122 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 122 LEWVADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 9988 8999999999999999999887654
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.3e-16 Score=116.02 Aligned_cols=91 Identities=20% Similarity=0.396 Sum_probs=78.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-c-CCceEEEecCCCCCC---------------cEEEcCCCCCC--CCCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-I-GVADVTGVELMDSLP---------------LVSRADPHNLP--FFDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~-~~~~v~~vD~s~~~~---------------~~~~~d~~~~~--~~~~~fD~i~~~ 155 (209)
+++.+|||+|||+|..+..+++ . +..+++|+|+|+.++ .+.++|+.+++ ++ ++||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 5688999999999999999994 3 456999999999855 38899999977 65 899999999
Q ss_pred cchhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 156 ~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.+.++. ++..+++++.+.||+||.+++....
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 888877 7889999999999999998888766
|
... |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.2e-15 Score=131.19 Aligned_cols=93 Identities=20% Similarity=0.179 Sum_probs=80.8
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC--------------cEEEcCCCCCCCCCCceeeEEcccch
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------------LVSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~--------------~~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
.++++.+|||+|||+|..+..+++....+|+|+|+|+.++ .+.++|+.+.++++++||+|+|..+.
T Consensus 263 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l 342 (475)
T PLN02336 263 DLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTI 342 (475)
T ss_pred CCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcc
Confidence 3577889999999999999999884234999999997643 47889999988888999999999888
Q ss_pred hhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 159 EAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 159 ~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+|+ ++..++++++++|||||.+++...
T Consensus 343 ~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 343 LHIQDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred cccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 888 999999999999999999988754
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.8e-15 Score=116.39 Aligned_cols=88 Identities=23% Similarity=0.338 Sum_probs=73.0
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcccch
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
..++.+|||+|||+|..+..+++.+. +|+|+|+|+.++ .+...|+.+.++ +++||+|++..+.
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~~ 105 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGEYDFILSTVVL 105 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCCcCEEEEecch
Confidence 35678999999999999999999875 999999998754 356678777776 4679999998877
Q ss_pred hhhC---HHHHHHHHHHhcccCcEEEEE
Q 028410 159 EALF---PSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 159 ~~~~---~~~~l~~~~r~LkpgG~lil~ 183 (209)
++++ ...+++++.++|||||++++.
T Consensus 106 ~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 106 MFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 6663 478999999999999996554
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-15 Score=125.69 Aligned_cols=112 Identities=22% Similarity=0.274 Sum_probs=92.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC------------cEEEcCCCCCCCCCCceeeEEcccchhhh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP------------LVSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~------------~~~~~d~~~~~~~~~~fD~i~~~~~~~~~ 161 (209)
+++.+|||+|||+|..+..+++ .+..+++++|+|+.++ .++.+|++++++++++||+|+++++.++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 5678999999999999998887 4446999999998753 47889999999999999999999888877
Q ss_pred -CHHHHHHHHHHhcccCcEEEEEEecC-C-------------cccHHHHHHHhccccccc
Q 028410 162 -FPSRFVGEMERTVKIGGVCMVLMEEC-A-------------GREIKQIVELFRTSSFTE 206 (209)
Q Consensus 162 -~~~~~l~~~~r~LkpgG~lil~~~~~-~-------------~~~~~~~~~l~~~~~~~~ 206 (209)
++...++++.++|||||.+++..... . .....++.+++++.||..
T Consensus 192 ~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~ 251 (340)
T PLN02490 192 PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKD 251 (340)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeE
Confidence 89999999999999999987764321 1 225677888888888843
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=8e-15 Score=114.04 Aligned_cols=91 Identities=23% Similarity=0.189 Sum_probs=76.0
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
.++++.+|||+|||+|..+..++. .+..+|+++|+++.++ .++++|+.+++. +++||+|+++.
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc
Confidence 346689999999999999999987 4556999999998744 478888888776 78999999965
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
. .++..+++++.+.|||||.+++.....
T Consensus 121 ~---~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 121 V---ASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred c---cCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 3 257899999999999999998886653
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.5e-15 Score=120.66 Aligned_cols=113 Identities=19% Similarity=0.256 Sum_probs=89.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-cC-CceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-IG-VADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~~-~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.++++.+|||+|||+|..+..+++ .+ .++|+++|+++.++ .+..+|++++++++++||+|+++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence 457899999999999998887776 33 35899999998744 36789999999988999999998
Q ss_pred cchhhh-CHHHHHHHHHHhcccCcEEEEEEecC--------------------CcccHHHHHHHhcccccc
Q 028410 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEEC--------------------AGREIKQIVELFRTSSFT 205 (209)
Q Consensus 156 ~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~--------------------~~~~~~~~~~l~~~~~~~ 205 (209)
.+.++. +...+++++.++|||||++++..... +.....++.+++...+|.
T Consensus 154 ~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~ 224 (272)
T PRK11873 154 CVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFV 224 (272)
T ss_pred CcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCC
Confidence 877777 88999999999999999998853211 123455677777777764
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.9e-15 Score=114.42 Aligned_cols=108 Identities=14% Similarity=0.205 Sum_probs=81.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcccchhh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~~~~~~ 160 (209)
.++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++ +...|+...++ +++||+|+++.+.++
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAAL-NEDYDFIFSTVVFMF 106 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccc-cCCCCEEEEeccccc
Confidence 4568999999999999999999875 9999999987554 44556655555 358999999877776
Q ss_pred hC---HHHHHHHHHHhcccCcEEEEEEecC-----------CcccHHHHHHHhccccc
Q 028410 161 LF---PSRFVGEMERTVKIGGVCMVLMEEC-----------AGREIKQIVELFRTSSF 204 (209)
Q Consensus 161 ~~---~~~~l~~~~r~LkpgG~lil~~~~~-----------~~~~~~~~~~l~~~~~~ 204 (209)
++ ...+++++.++|||||++++...-. ......++.+.|....+
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~~~~ 164 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYADWEL 164 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCCCeE
Confidence 63 4789999999999999966553211 12456677777765444
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-15 Score=106.66 Aligned_cols=88 Identities=23% Similarity=0.319 Sum_probs=70.3
Q ss_pred CCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc----------------EEEcCC-CCCCCCCCceeeEEccc-
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL----------------VSRADP-HNLPFFDEAFDVAFTAH- 156 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~----------------~~~~d~-~~~~~~~~~fD~i~~~~- 156 (209)
|+.+|||+|||+|..+..+++ .+..+|+|+|+|+.+++ ++++|+ ..... .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 578999999999999999999 45569999999998553 788888 33333 45699999987
Q ss_pred chhhh----CHHHHHHHHHHhcccCcEEEEEE
Q 028410 157 LAEAL----FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 157 ~~~~~----~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
..++. +..++++++.+.|+|||++++..
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 33322 45789999999999999987754
|
... |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=118.77 Aligned_cols=111 Identities=15% Similarity=0.229 Sum_probs=90.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC--------------c--EEEcCCCCCCCCCCceeeEEcccch
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------------L--VSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~--------------~--~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
-.+.+|||||||.|+++..++..|...|+|+|+++... . .+-..++++|. .++||+|+|..|.
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 46889999999999999999998888999999988621 1 11235666776 7899999999999
Q ss_pred hhh-CHHHHHHHHHHhcccCcEEEEEEecCCc---------------------ccHHHHHHHhccccccc
Q 028410 159 EAL-FPSRFVGEMERTVKIGGVCMVLMEECAG---------------------REIKQIVELFRTSSFTE 206 (209)
Q Consensus 159 ~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~---------------------~~~~~~~~l~~~~~~~~ 206 (209)
.|. +|...+.+++..|+|||.+++-+-..+. .+...+...++++||.+
T Consensus 193 YHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~ 262 (315)
T PF08003_consen 193 YHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKD 262 (315)
T ss_pred hccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCce
Confidence 999 9999999999999999999876543211 26777888888998854
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-15 Score=120.89 Aligned_cols=86 Identities=23% Similarity=0.359 Sum_probs=72.6
Q ss_pred CCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcE---------------------EEcCCCCCCCCCCceeeEEcc
Q 028410 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLV---------------------SRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~---------------------~~~d~~~~~~~~~~fD~i~~~ 155 (209)
+++|||+|||+|.++..|++.|. +|+|+|++++++++ ...+.+.. .+.||+|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeH
Confidence 48899999999999999999985 99999999997752 22222222 2569999999
Q ss_pred cchhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 156 ~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.+.+|. ||++++..+.+.|||||.+++.+-.
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 999999 9999999999999999999888654
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-14 Score=113.63 Aligned_cols=93 Identities=26% Similarity=0.423 Sum_probs=81.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCC--------------CcEEEcCCCCCCCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL--------------PLVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
.+.++.+|||+|||+|..+..+++. +..+++++|+++.+ +.+...|+.+.++++++||+|++..
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 95 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDR 95 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEec
Confidence 5578899999999999999999884 45699999999763 3477888888888889999999999
Q ss_pred chhhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 157 LAEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 157 ~~~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+.++. ++..+++++.++|||||.+++...
T Consensus 96 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 96 VLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred hhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 88888 999999999999999999887753
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-14 Score=114.71 Aligned_cols=92 Identities=21% Similarity=0.243 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC-----------CcEEEcCCCCCCCCCCceeeEEcccchhhh-
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL-----------PLVSRADPHNLPFFDEAFDVAFTAHLAEAL- 161 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~-----------~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~- 161 (209)
..+.+|||+|||+|..+..+++. +..+++++|+++.+ +.++.+|+.+.++++++||+|+++++.++.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc
Confidence 34579999999999999999884 44579999999874 357889999999889999999999998888
Q ss_pred CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 162 FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 162 ~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
++..++.++.++|||||.+++....
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~ 137 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFG 137 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 9999999999999999998887643
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-14 Score=113.78 Aligned_cols=94 Identities=13% Similarity=0.028 Sum_probs=74.4
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCC----CCcEEEcCCCCCC--------CCCCceeeEEcccch
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS----LPLVSRADPHNLP--------FFDEAFDVAFTAHLA 158 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~----~~~~~~~d~~~~~--------~~~~~fD~i~~~~~~ 158 (209)
.++++.+|||+|||+|.++..+++. + .+.|+|+|+++. .+.++++|+.+.+ +.+++||+|+++...
T Consensus 48 ~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~ 127 (209)
T PRK11188 48 LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAP 127 (209)
T ss_pred cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCC
Confidence 4588899999999999999999884 2 369999999872 3568999999863 677899999996432
Q ss_pred hhh-C-----------HHHHHHHHHHhcccCcEEEEEEec
Q 028410 159 EAL-F-----------PSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 159 ~~~-~-----------~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+.. + ...+++++.++|||||.+++.+..
T Consensus 128 ~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 128 NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 221 1 146899999999999999886554
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.2e-15 Score=102.92 Aligned_cols=80 Identities=25% Similarity=0.254 Sum_probs=53.2
Q ss_pred EEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc---------------EEEcCCCCCC--CCCCceeeEEcccchhhh-
Q 028410 101 LCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL---------------VSRADPHNLP--FFDEAFDVAFTAHLAEAL- 161 (209)
Q Consensus 101 LDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~---------------~~~~d~~~~~--~~~~~fD~i~~~~~~~~~- 161 (209)
||+|||+|..+..+.+. +..+++++|+|+.+++ ....+..+.. ...++||+|++..+.+|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999884 6679999999999984 1222222221 122599999999999999
Q ss_pred CHHHHHHHHHHhcccCcEE
Q 028410 162 FPSRFVGEMERTVKIGGVC 180 (209)
Q Consensus 162 ~~~~~l~~~~r~LkpgG~l 180 (209)
++..+++++.+.|||||++
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.8e-14 Score=109.80 Aligned_cols=105 Identities=16% Similarity=0.163 Sum_probs=78.6
Q ss_pred CCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
++.+|||+|||+|..+..++.. +.++|+++|+|+.++ .++++|+.+++ .+++||+|+++.+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~~-- 118 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRAL-- 118 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehhh--
Confidence 3789999999999999998874 456899999998633 47888888874 3679999999652
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
.+...+++.+.+.|||||.+++..+.....+...+.+-...+|+
T Consensus 119 -~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~ 162 (181)
T TIGR00138 119 -ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGV 162 (181)
T ss_pred -hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCc
Confidence 25778889999999999998887654443333334333333555
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-14 Score=111.46 Aligned_cols=110 Identities=19% Similarity=0.255 Sum_probs=82.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC--------------cEEEcCCCCCCCCCCceeeEEcccchhh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------------LVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~--------------~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 160 (209)
-++.++||+|||.|+.+.+||+.|+ +|+++|.|+..+ ...+.|+.+..++ +.||+|++..+.++
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 4678999999999999999999998 999999999744 3678888887774 68999998777777
Q ss_pred hCH---HHHHHHHHHhcccCcEEEEEEecC-C----------cccHHHHHHHhccccccc
Q 028410 161 LFP---SRFVGEMERTVKIGGVCMVLMEEC-A----------GREIKQIVELFRTSSFTE 206 (209)
Q Consensus 161 ~~~---~~~l~~~~r~LkpgG~lil~~~~~-~----------~~~~~~~~~l~~~~~~~~ 206 (209)
+++ ..+++.|...++|||++++.+.-. + .....++.+.|..+++++
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~dW~il~ 166 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYADWEILK 166 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTTTSEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhCCCeEEE
Confidence 733 678999999999999988854321 1 124466777887777654
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-14 Score=110.35 Aligned_cols=136 Identities=18% Similarity=0.212 Sum_probs=93.5
Q ss_pred CCCCchhhhhccCchhHhhHhHHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcEEEc
Q 028410 58 HLPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRA 137 (209)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~~~~ 137 (209)
|..+++.+-+-|..+.- ..++..+. ...++..|.|+|||.+..+..+.+ ++ +|...|+......+...
T Consensus 44 YH~Gfr~Qv~~WP~nPv-------d~iI~~l~---~~~~~~viaD~GCGdA~la~~~~~-~~-~V~SfDLva~n~~Vtac 111 (219)
T PF05148_consen 44 YHEGFRQQVKKWPVNPV-------DVIIEWLK---KRPKSLVIADFGCGDAKLAKAVPN-KH-KVHSFDLVAPNPRVTAC 111 (219)
T ss_dssp HHHHHHHHHCTSSS-HH-------HHHHHHHC---TS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-SSTTEEES
T ss_pred HHHHHHHHHhcCCCCcH-------HHHHHHHH---hcCCCEEEEECCCchHHHHHhccc-Cc-eEEEeeccCCCCCEEEe
Confidence 66677776677776543 22333331 225568999999999999976543 23 89999999888889999
Q ss_pred CCCCCCCCCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 138 DPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 138 d~~~~~~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
|+.+.|+++++.|+++++-.....+..+++.|..|+|||||.+.|..-.+.....+.+.+.+...||.
T Consensus 112 dia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~ 179 (219)
T PF05148_consen 112 DIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFK 179 (219)
T ss_dssp -TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEE
T ss_pred cCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCe
Confidence 99999999999999988654554588999999999999999999998888888999999999999984
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.3e-14 Score=117.17 Aligned_cols=109 Identities=15% Similarity=0.229 Sum_probs=85.0
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcccchhhh
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~~~~~~~ 161 (209)
++.+|||+|||+|..+..+++.|. +|+|+|+|+.+++ +...|+...++ +++||+|++..+.+++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 445999999999999999999875 9999999988543 55667766655 6789999998887776
Q ss_pred C---HHHHHHHHHHhcccCcEEEEEEecC-----------CcccHHHHHHHhccccccc
Q 028410 162 F---PSRFVGEMERTVKIGGVCMVLMEEC-----------AGREIKQIVELFRTSSFTE 206 (209)
Q Consensus 162 ~---~~~~l~~~~r~LkpgG~lil~~~~~-----------~~~~~~~~~~l~~~~~~~~ 206 (209)
+ ...+++++.++|||||+++++.... ......++.+.|...++++
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~~~i~~ 256 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQDWEIVK 256 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCCCEEEE
Confidence 3 4789999999999999976654211 1246677888888776654
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.3e-14 Score=109.03 Aligned_cols=94 Identities=20% Similarity=0.303 Sum_probs=79.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc----------------EEEcCCCCCC-CCCCceeeEEcccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------VSRADPHNLP-FFDEAFDVAFTAHL 157 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------------~~~~d~~~~~-~~~~~fD~i~~~~~ 157 (209)
.....+|++|||||..-...--.+..+||++|++++|-+ |++++.+++| ++++++|.|++.-+
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 344567999999999877766545569999999998543 7899999998 89999999999877
Q ss_pred hhhh-CHHHHHHHHHHhcccCcEEEEEEecCC
Q 028410 158 AEAL-FPSRFVGEMERTVKIGGVCMVLMEECA 188 (209)
Q Consensus 158 ~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~ 188 (209)
.... ++.+.++|+.|+|||||++++..-..+
T Consensus 155 LCSve~~~k~L~e~~rlLRpgG~iifiEHva~ 186 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAG 186 (252)
T ss_pred EeccCCHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 7777 999999999999999999888765543
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.52 E-value=3e-14 Score=113.10 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=84.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------------------------EEEcCCCCCCCC-C
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------------------VSRADPHNLPFF-D 146 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------------------------~~~~d~~~~~~~-~ 146 (209)
.++.+|||+|||.|..+.+||+.|+ +|+|+|+|+.+++ +.++|+.+++.. .
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 5778999999999999999999998 9999999987333 468888776642 4
Q ss_pred CceeeEEcccchhhhCH---HHHHHHHHHhcccCcEEEEEEecC---------CcccHHHHHHHhcc-cccc
Q 028410 147 EAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEEC---------AGREIKQIVELFRT-SSFT 205 (209)
Q Consensus 147 ~~fD~i~~~~~~~~~~~---~~~l~~~~r~LkpgG~lil~~~~~---------~~~~~~~~~~l~~~-~~~~ 205 (209)
++||.|+...+.+++.+ ...++.+.++|||||++++.+... -.....++.++|.. +++.
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~~~~~i~ 183 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYGGHYEIE 183 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhcCCceEE
Confidence 67999998776666733 668999999999999866654321 12466778888863 3553
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.3e-14 Score=115.28 Aligned_cols=87 Identities=21% Similarity=0.303 Sum_probs=71.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-C---CceEEEecCCCCCC----------cEEEcCCCCCCCCCCceeeEEcccchhh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-G---VADVTGVELMDSLP----------LVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~---~~~v~~vD~s~~~~----------~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 160 (209)
.+..+|||+|||+|.++..+++. + ..+++|+|+|+.++ .+.++|+.++|+++++||+|++...
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~--- 160 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA--- 160 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC---
Confidence 45688999999999999998873 2 23799999998755 3788999999999999999998532
Q ss_pred hCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 161 LFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 161 ~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
...+.++.|+|||||.++++....
T Consensus 161 ---~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 161 ---PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred ---CCCHHHHHhhccCCCEEEEEeCCC
Confidence 234689999999999998876553
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-13 Score=107.93 Aligned_cols=88 Identities=19% Similarity=0.280 Sum_probs=71.6
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC----------cEEEcCCCCCCCCCCceeeEEcccchhhhC
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP----------LVSRADPHNLPFFDEAFDVAFTAHLAEALF 162 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~----------~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~ 162 (209)
+.++.+|||+|||+|..+..+++. +..+++|+|+|+.++ .+.++|+.+ ++++++||+|+++.+.+|++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCC
Confidence 467889999999999999999884 556999999999855 377888888 88899999999999888885
Q ss_pred H---HHHHHHHHHhcccCcEEEEEE
Q 028410 163 P---SRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 163 ~---~~~l~~~~r~LkpgG~lil~~ 184 (209)
+ .++++++.|++ ++.+++..
T Consensus 120 p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 120 PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 4 66778888876 45555544
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-13 Score=110.69 Aligned_cols=106 Identities=15% Similarity=0.222 Sum_probs=83.7
Q ss_pred CeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcccchhh
Q 028410 98 SKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 160 (209)
.+|||+|||+|..+..+++. +..+++|+|+|+.++ .+...|+.+.+++ ++||+|++..+.++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 37999999999999999884 446999999997643 4677888766664 58999999988888
Q ss_pred h-CHHHHHHHHHHhcccCcEEEEEEecCC-------------cccHHHHHHHhccccc
Q 028410 161 L-FPSRFVGEMERTVKIGGVCMVLMEECA-------------GREIKQIVELFRTSSF 204 (209)
Q Consensus 161 ~-~~~~~l~~~~r~LkpgG~lil~~~~~~-------------~~~~~~~~~l~~~~~~ 204 (209)
. ++..+++++.++|||||.+++.....+ .....++.+++.+.+|
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf 137 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNL 137 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCC
Confidence 8 899999999999999999988753211 1234556677777776
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-14 Score=111.72 Aligned_cols=108 Identities=15% Similarity=0.144 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC---------------cEEEcCC-CCCC--CCCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP---------------LVSRADP-HNLP--FFDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~---------------~~~~~d~-~~~~--~~~~~fD~i~~~ 155 (209)
+++.+|||+|||+|..+..+++. +..+++|+|+|+.++ .++++|+ ..++ +++++||.|+++
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 46789999999999999999884 556899999998744 3788888 6666 778899999986
Q ss_pred cchhhh---------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 156 HLAEAL---------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 156 ~~~~~~---------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
....+. ....+++++.++|||||.+++.+.. ......+.+.+...++
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~--~~~~~~~~~~~~~~g~ 174 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW--EGYAEYMLEVLSAEGG 174 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC--HHHHHHHHHHHHhCcc
Confidence 432111 1478899999999999998876643 4556677777777665
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.4e-14 Score=113.71 Aligned_cols=89 Identities=8% Similarity=0.104 Sum_probs=73.8
Q ss_pred CCCCCeEEEEcCCCChhHHHHHh---cCCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNS---IGVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFT 154 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~---~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~ 154 (209)
+.++.+|||+|||+|..+..+++ .+..+++|+|+|+.|+ .++++|+.+++++ .+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 46789999999999999988876 2456999999999755 3678888887764 4899999
Q ss_pred ccchhhhC---HHHHHHHHHHhcccCcEEEEEE
Q 028410 155 AHLAEALF---PSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 155 ~~~~~~~~---~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+.+.++++ ...+++++.++|||||.+++..
T Consensus 132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 87777773 3679999999999999998875
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-13 Score=112.57 Aligned_cols=104 Identities=11% Similarity=0.095 Sum_probs=77.9
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCChh----HHHHHhc-C-----CceEEEecCCCCCC---------------------
Q 028410 84 FFKHLQGKSLLFNHSKVLCVSAGAGHE----VMAFNSI-G-----VADVTGVELMDSLP--------------------- 132 (209)
Q Consensus 84 ~~~~l~~~~~~~~~~~iLDiGcG~G~~----~~~la~~-~-----~~~v~~vD~s~~~~--------------------- 132 (209)
+++.+.......++.+|+|+|||+|.. +..+++. + ..+|+|+|+|+.++
T Consensus 87 vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~ 166 (264)
T smart00138 87 VLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALL 166 (264)
T ss_pred HhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHH
Confidence 334443333345678999999999974 4444442 1 24899999999744
Q ss_pred ---------------------cEEEcCCCCCCCCCCceeeEEcccchhhhCH---HHHHHHHHHhcccCcEEEEEEecC
Q 028410 133 ---------------------LVSRADPHNLPFFDEAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 133 ---------------------~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~---~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
.|.+.|+.+.++++++||+|+|.++.+++++ .++++++++.|||||++++...+.
T Consensus 167 ~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 167 ARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSES 245 (264)
T ss_pred hhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECccc
Confidence 3567788887777899999999999888843 579999999999999988876654
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.7e-13 Score=105.33 Aligned_cols=92 Identities=29% Similarity=0.378 Sum_probs=78.8
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc-CC-ceEEEecCCCCC-------------CcEEEcCCCCCCCCCCceeeEEcccch
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI-GV-ADVTGVELMDSL-------------PLVSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~-~~-~~v~~vD~s~~~-------------~~~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
..++.+|||+|||+|..+..+++. +. .+++++|+++.+ +.+..+|+.+.++++++||+|+++...
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 357899999999999999999884 32 589999998653 457788998888888899999998877
Q ss_pred hhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 159 EAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 159 ~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
++. ++..+++++.+.|+|||.+++...
T Consensus 117 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 117 RNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 777 899999999999999999987654
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-13 Score=108.12 Aligned_cols=111 Identities=19% Similarity=0.200 Sum_probs=84.1
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------------------------EEEcCCCCCCCCC
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------------------VSRADPHNLPFFD 146 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------------------------~~~~d~~~~~~~~ 146 (209)
..++.+|||+|||.|..+.+|++.|+ +|+|+|+|+.+++ +.++|+.+++..+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 35678999999999999999999998 9999999987333 4678888775332
Q ss_pred -CceeeEEcccchhhhC---HHHHHHHHHHhcccCcEEEEEEe--cCC-------cccHHHHHHHhcc-cccc
Q 028410 147 -EAFDVAFTAHLAEALF---PSRFVGEMERTVKIGGVCMVLME--ECA-------GREIKQIVELFRT-SSFT 205 (209)
Q Consensus 147 -~~fD~i~~~~~~~~~~---~~~~l~~~~r~LkpgG~lil~~~--~~~-------~~~~~~~~~l~~~-~~~~ 205 (209)
.+||.|+...+.+++. ..+.++.+.++|||||.+++++. ..+ .....++.++|.. .++.
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~~~~i~ 186 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAGCFEIE 186 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcCCceEE
Confidence 5899999877777773 37889999999999997554322 111 2466778888876 4553
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.6e-13 Score=106.87 Aligned_cols=92 Identities=25% Similarity=0.350 Sum_probs=78.2
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcC--CceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEcc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIG--VADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~--~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
..++.+|||+|||+|..+..+++.. ..+++++|+++.+ +.+..+|+.+.++++++||+|+++
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~ 128 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIA 128 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEe
Confidence 4567899999999999999998853 4799999998753 347788888888878899999998
Q ss_pred cchhhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 156 ~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
++.++. ++..++.++.+.|+|||.++++..
T Consensus 129 ~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 129 FGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred cccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 877777 899999999999999999887643
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-14 Score=100.63 Aligned_cols=79 Identities=25% Similarity=0.431 Sum_probs=64.3
Q ss_pred EEEEcCCCChhHHHHHhc---C-CceEEEecCCCCCC--------------cEEEcCCCCCCCCCCceeeEEccc-chhh
Q 028410 100 VLCVSAGAGHEVMAFNSI---G-VADVTGVELMDSLP--------------LVSRADPHNLPFFDEAFDVAFTAH-LAEA 160 (209)
Q Consensus 100 iLDiGcG~G~~~~~la~~---~-~~~v~~vD~s~~~~--------------~~~~~d~~~~~~~~~~fD~i~~~~-~~~~ 160 (209)
|||+|||+|..+..+.+. + ..+++|+|+|+.++ .++++|+.++++.+++||+|++.. +.+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 799999999999999984 2 26999999999855 389999999998899999999954 4666
Q ss_pred hC---HHHHHHHHHHhcccCc
Q 028410 161 LF---PSRFVGEMERTVKIGG 178 (209)
Q Consensus 161 ~~---~~~~l~~~~r~LkpgG 178 (209)
+. ...+++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 74 4889999999999998
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.4e-13 Score=119.11 Aligned_cols=111 Identities=20% Similarity=0.256 Sum_probs=88.6
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-------------EEEcCCC--CCCCCCCceeeEEcccchh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-------------VSRADPH--NLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-------------~~~~d~~--~~~~~~~~fD~i~~~~~~~ 159 (209)
.++.+|||+|||+|..+..+++.+ .+|+|+|+++.+++ ++++|+. ++++++++||+|++..+.+
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 457799999999999999999874 49999999988553 6778886 4678889999999998888
Q ss_pred hh-C--HHHHHHHHHHhcccCcEEEEEEecC-------------CcccHHHHHHHhccccccc
Q 028410 160 AL-F--PSRFVGEMERTVKIGGVCMVLMEEC-------------AGREIKQIVELFRTSSFTE 206 (209)
Q Consensus 160 ~~-~--~~~~l~~~~r~LkpgG~lil~~~~~-------------~~~~~~~~~~l~~~~~~~~ 206 (209)
++ + ..++++++.++|||||.+++..... .....+....+|.++++.+
T Consensus 115 ~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 177 (475)
T PLN02336 115 YLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRD 177 (475)
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheecc
Confidence 87 3 4789999999999999987753221 1124667778898888754
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-13 Score=110.45 Aligned_cols=88 Identities=9% Similarity=0.075 Sum_probs=73.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc---CCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI---GVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~---~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.++.+|||+|||+|..+..+++. +..+++|+|+|+.|+ .++++|+.+++++ .+|+|+++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 67889999999999999998873 346999999998754 3678888888764 48999998
Q ss_pred cchhhh---CHHHHHHHHHHhcccCcEEEEEE
Q 028410 156 HLAEAL---FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 156 ~~~~~~---~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
.+.+++ ++..+++++.++|||||.+++..
T Consensus 130 ~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 130 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred cchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 877776 34789999999999999988874
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-13 Score=105.55 Aligned_cols=108 Identities=21% Similarity=0.322 Sum_probs=88.8
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc----------EEEcCCCC-CCCCCCceeeEEccc-------c
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------VSRADPHN-LPFFDEAFDVAFTAH-------L 157 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------~~~~d~~~-~~~~~~~fD~i~~~~-------~ 157 (209)
.+.-|||||||+|..+..+.+.|+ .++|+|+|+.|++ ++.+|+-. +||+.++||-+++.. .
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA 128 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNA 128 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeeccc
Confidence 478999999999999999999887 9999999999885 55566544 899999999999842 1
Q ss_pred hhhh-CH----HHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 158 AEAL-FP----SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 158 ~~~~-~~----~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
.... +| ..++..++.+|++|++.++-++..+..+...+..-..+.||
T Consensus 129 ~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF 180 (270)
T KOG1541|consen 129 DKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGF 180 (270)
T ss_pred CccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhcc
Confidence 1111 33 55788899999999999999999888888888887777775
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-13 Score=105.16 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=87.5
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc----------EEEcCCCCCCCCCCceeeEE
Q 028410 85 FKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL----------VSRADPHNLPFFDEAFDVAF 153 (209)
Q Consensus 85 ~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~----------~~~~d~~~~~~~~~~fD~i~ 153 (209)
..++.+.-.+.+..+|.|+|||+|..+..|++ .+...++|+|-|++|++ |.++|+.++. ++..+|+++
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllf 97 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLF 97 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhh
Confidence 34445555778899999999999999999998 58789999999999885 8889998876 578999999
Q ss_pred cccchhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 154 TAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 154 ~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
++.+++++ +-.+++..+...|.|||++.+.+..
T Consensus 98 aNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 98 ANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred hhhhhhhccccHHHHHHHHHhhCCCceEEEECCC
Confidence 99999999 8899999999999999997666654
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.44 E-value=5e-13 Score=109.80 Aligned_cols=98 Identities=24% Similarity=0.255 Sum_probs=72.3
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC----------------CcEEEcCCCCCCCCCC
Q 028410 85 FKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNLPFFDE 147 (209)
Q Consensus 85 ~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~ 147 (209)
+..+.+...++++.+|||||||.|..+..+++. |. +|+|+.+|++. +++...|..+++.
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~--- 126 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG--- 126 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---
Confidence 444555567899999999999999999999995 76 99999999872 3367777776643
Q ss_pred ceeeEEcccchhhh---CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 148 AFDVAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 148 ~fD~i~~~~~~~~~---~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+||.|++..+.+|+ +...+++++.+.|||||++++....
T Consensus 127 ~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 99999999888888 4589999999999999999877544
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.5e-13 Score=103.12 Aligned_cols=90 Identities=26% Similarity=0.312 Sum_probs=76.2
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC--------CCcEEEcCCCC-C-CCCCCceeeEEcccchhhh-C
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------LPLVSRADPHN-L-PFFDEAFDVAFTAHLAEAL-F 162 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~--------~~~~~~~d~~~-~-~~~~~~fD~i~~~~~~~~~-~ 162 (209)
..++.+|||+|||.|.+..+|.+....+..|+|++++ -+.++++|+++ + .|++++||.|+++....++ +
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~ 90 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRR 90 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhH
Confidence 4899999999999999999999842348999999988 44599999987 3 4899999999999988888 9
Q ss_pred HHHHHHHHHHhcccCcEEEEEEec
Q 028410 163 PSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 163 ~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
|..+++||.|+ |...++.+..
T Consensus 91 P~~vL~EmlRV---gr~~IVsFPN 111 (193)
T PF07021_consen 91 PDEVLEEMLRV---GRRAIVSFPN 111 (193)
T ss_pred HHHHHHHHHHh---cCeEEEEecC
Confidence 99999999766 5566676664
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-13 Score=121.30 Aligned_cols=91 Identities=18% Similarity=0.247 Sum_probs=76.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC--------------cEEEcCCCCCC--CCCCceeeEEcccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP--------------LVSRADPHNLP--FFDEAFDVAFTAHL 157 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~--------------~~~~~d~~~~~--~~~~~fD~i~~~~~ 157 (209)
.++.+|||+|||+|..+..+++ .+..+++|+|+|+.|+ .++++|..+++ +++++||+|+++.+
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 5689999999999999998887 4567999999999754 25778888877 78899999998866
Q ss_pred hhhh--------------CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 158 AEAL--------------FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 158 ~~~~--------------~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
.+++ ++..+++++.++|||||.+++...
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 5542 357899999999999999988754
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.43 E-value=9e-13 Score=101.14 Aligned_cols=109 Identities=22% Similarity=0.265 Sum_probs=80.3
Q ss_pred CCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
++.+|||+|||+|..+..+++. +..+|+++|+++.++ .+...|..+.. ++++||+|+++--.+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~-~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL-PDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC-CTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc-cccceeEEEEccchh
Confidence 7889999999999999999995 444799999999844 36677776533 378999999973221
Q ss_pred hh------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccccc
Q 028410 160 AL------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFTE 206 (209)
Q Consensus 160 ~~------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~~ 206 (209)
.. ...+++.+..+.|||||.++++...... ....+.++|...+.+.
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~-~~~~l~~~f~~~~~~~ 161 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLG-YERLLKELFGDVEVVA 161 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSC-HHHHHHHHHS--EEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEeecCCC-hHHHHHHhcCCEEEEE
Confidence 11 2488899999999999999888776533 3444788998777644
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-12 Score=105.41 Aligned_cols=96 Identities=22% Similarity=0.220 Sum_probs=78.9
Q ss_pred HHhcccCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc----------------EEEcCCCCCCCCCCcee
Q 028410 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL----------------VSRADPHNLPFFDEAFD 150 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~----------------~~~~d~~~~~~~~~~fD 150 (209)
..+...+++|+++||||||-|..+.++|+ ++. +|+|+++|+++.+ ++..|..++ ++.||
T Consensus 64 ~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~---~e~fD 139 (283)
T COG2230 64 ILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF---EEPFD 139 (283)
T ss_pred HHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc---ccccc
Confidence 33444889999999999999999999999 465 9999999998443 445555444 45699
Q ss_pred eEEcccchhhh---CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 151 VAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 151 ~i~~~~~~~~~---~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
-|++..+++|+ +...+++.+.+.|+|||.+++..-..
T Consensus 140 rIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 140 RIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred eeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence 99999999988 36999999999999999998886553
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=94.31 Aligned_cols=91 Identities=14% Similarity=0.086 Sum_probs=70.0
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc---------------EEEcCCCC-CCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL---------------VSRADPHN-LPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~---------------~~~~d~~~-~~~~~~~fD~i~~~ 155 (209)
.+.++.+|||+|||+|..+..+++. +..+++++|+++.+++ ++.+|+.+ .+...++||+|++.
T Consensus 16 ~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~ 95 (124)
T TIGR02469 16 RLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIG 95 (124)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEEC
Confidence 4466789999999999999999984 5579999999987443 55566554 33334689999986
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEEe
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
.... ...++++++.+.|||||.+++.+.
T Consensus 96 ~~~~--~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 96 GSGG--LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred Ccch--hHHHHHHHHHHHcCCCCEEEEEec
Confidence 5322 346899999999999999888653
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=101.19 Aligned_cols=105 Identities=18% Similarity=0.203 Sum_probs=81.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcccchhh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~~~~~~ 160 (209)
.++.+|||+|||+|..+..+++.+. +++++|+++.+++ ++.+|..+.. .++||+|+++...++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCC
Confidence 4567899999999999999999765 9999999998553 5667766543 459999999743221
Q ss_pred h-C---------------------HHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 161 L-F---------------------PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 161 ~-~---------------------~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
. + ..+++.++.++|||||.++++.... .+...+.+.+++.+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~--~~~~~~~~~l~~~gf 158 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL--NGEPDTFDKLDERGF 158 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc--CChHHHHHHHHhCCC
Confidence 1 1 3568999999999999988877653 346778888888887
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-12 Score=103.69 Aligned_cols=109 Identities=18% Similarity=0.221 Sum_probs=80.8
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC--------------cEEEcCCCCCCCCCCceeeEEccc--
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------------LVSRADPHNLPFFDEAFDVAFTAH-- 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~--------------~~~~~d~~~~~~~~~~fD~i~~~~-- 156 (209)
...++.+|||+|||+|..+..++..+..+++++|+++.++ .++.+|+.+. +++++||+|+++.
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy 111 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPY 111 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCC
Confidence 3577899999999999999999887656999999998754 2566777653 4578999999962
Q ss_pred chhhh--------------------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 157 LAEAL--------------------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 157 ~~~~~--------------------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
..... ....++.++.++|||||+++++..+.. ....+.+.++..++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~--~~~~~~~~l~~~g~ 177 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS--GVERTLTRLSEAGL 177 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--CHHHHHHHHHHCCC
Confidence 11100 135678899999999999888766542 45566777766665
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-12 Score=112.20 Aligned_cols=90 Identities=20% Similarity=0.218 Sum_probs=73.6
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc------------EEEcCCCCCCCCCCceeeEEcccch
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL------------VSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~------------~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
..++++.+|||+|||+|..+..+++. +. +|+|+|+|+++++ +...|..++ +++||.|++..+.
T Consensus 163 l~l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~ 238 (383)
T PRK11705 163 LQLKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMF 238 (383)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCch
Confidence 35688999999999999999999984 54 9999999998654 444555444 4789999998877
Q ss_pred hhh---CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 159 EAL---FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 159 ~~~---~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+|+ ++..+++++.++|||||.+++...
T Consensus 239 ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 239 EHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred hhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 776 347899999999999999988753
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=104.11 Aligned_cols=107 Identities=21% Similarity=0.208 Sum_probs=93.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcEEEcCCCCCCCCCCceeeEEcccchhhhCHHHHHHHHHHhc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTV 174 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~L 174 (209)
.....|.|+|||.+.++. .... +|...|+-+..-.++.+|+.+.|++|++.|+++++-.+...+..+++.|+.|+|
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~~~-kV~SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiL 254 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SERH-KVHSFDLVAVNERVIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRIL 254 (325)
T ss_pred cCceEEEecccchhhhhh---cccc-ceeeeeeecCCCceeeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHh
Confidence 667899999999988765 2333 899999998888999999999999999999998864444458899999999999
Q ss_pred ccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 175 KIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 175 kpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
||||.+++..-.+...+...|...+..+||-
T Consensus 255 k~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~ 285 (325)
T KOG3045|consen 255 KPGGLLYIAEVKSRFSDVKGFVRALTKLGFD 285 (325)
T ss_pred ccCceEEEEehhhhcccHHHHHHHHHHcCCe
Confidence 9999999998888888899999999999983
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.7e-12 Score=98.48 Aligned_cols=107 Identities=11% Similarity=0.088 Sum_probs=80.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc---------------EEEcCCCCCCCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL---------------VSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~---------------~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
...++.+|||+|||+|..+..+++. +..+|+++|+++.+++ ++.+|.. .++ .++||+|++..
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~ 105 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGG 105 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECC
Confidence 3467889999999999999999884 4569999999998543 4455553 233 46899999865
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
... ....++.++.+.|||||++++.... ..+...+.+++++.++.
T Consensus 106 ~~~--~~~~~l~~~~~~Lk~gG~lv~~~~~--~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 106 SGG--NLTAIIDWSLAHLHPGGRLVLTFIL--LENLHSALAHLEKCGVS 150 (187)
T ss_pred Ccc--CHHHHHHHHHHhcCCCeEEEEEEec--HhhHHHHHHHHHHCCCC
Confidence 432 3567889999999999998775432 34567788888888873
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.6e-13 Score=103.98 Aligned_cols=107 Identities=16% Similarity=0.225 Sum_probs=80.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC---------------cEEEcCCCCCC---CCCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP---------------LVSRADPHNLP---FFDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~---~~~~~fD~i~~~ 155 (209)
++..++||+|||+|.++..+++ .+..+++|+|+++.++ .++++|+.+++ ++++++|.|+++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4567999999999999999998 4667999999998744 37788887643 456799999986
Q ss_pred cchhhh---------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccc
Q 028410 156 HLAEAL---------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSS 203 (209)
Q Consensus 156 ~~~~~~---------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~ 203 (209)
.-..+. ....+++++.++|||||.+++.+.. ......+.+.+..++
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~--~~~~~~~~~~~~~~~ 149 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN--EPLFEDMLKVLSEND 149 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHHhCC
Confidence 322211 1267999999999999998777654 334555666666554
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=96.05 Aligned_cols=95 Identities=19% Similarity=0.101 Sum_probs=72.7
Q ss_pred cccCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCC----CCcEEEcCCCCCC--------CCCCceeeEEccc
Q 028410 91 KSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----LPLVSRADPHNLP--------FFDEAFDVAFTAH 156 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~----~~~~~~~d~~~~~--------~~~~~fD~i~~~~ 156 (209)
...++++.+|||+|||+|..+..+++. +.++|+++|+|+. .+.++++|+.+.+ +++++||+|++..
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~ 106 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDA 106 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCC
Confidence 345688999999999999999988873 4458999999985 3457788887643 4567899999853
Q ss_pred c--------hhhh----CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 157 L--------AEAL----FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 157 ~--------~~~~----~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
. ..+. ...+++.++.++|+|||++++...
T Consensus 107 ~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 107 APNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred CCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 1 1111 136889999999999999888653
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.2e-12 Score=102.67 Aligned_cols=91 Identities=24% Similarity=0.309 Sum_probs=75.1
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC--------------cEEEcCCCCCC-CCCCceeeEEcccch
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------------LVSRADPHNLP-FFDEAFDVAFTAHLA 158 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~--------------~~~~~d~~~~~-~~~~~fD~i~~~~~~ 158 (209)
..++.+|||+|||+|..+..+++.+. +++++|+++.++ .+...++.+.+ ..+++||+|++.++.
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 45788999999999999999988764 899999998744 24556665554 345799999999888
Q ss_pred hhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 159 EAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 159 ~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
++. ++..+++++.+.|+|||.+++...
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 877 899999999999999999887654
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.9e-12 Score=104.50 Aligned_cols=113 Identities=18% Similarity=0.150 Sum_probs=80.6
Q ss_pred hhHhhHhHHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCC-------------CcEEE
Q 028410 72 KSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL-------------PLVSR 136 (209)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~-------------~~~~~ 136 (209)
+.|....+.+...+-.-+....++++.+|||+|||+|.++..+++. + .+.|+++|+++.+ +.++.
T Consensus 108 R~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~ 187 (293)
T PTZ00146 108 RVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPII 187 (293)
T ss_pred eeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEE
Confidence 3466666655544433333345689999999999999999999994 3 5799999999742 23677
Q ss_pred cCCCCC---CCCCCceeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 137 ADPHNL---PFFDEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 137 ~d~~~~---~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+|+... ....++||+|++... .. +...++.++.+.|||||.+++....
T Consensus 188 ~Da~~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika 239 (293)
T PTZ00146 188 EDARYPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIISIKA 239 (293)
T ss_pred CCccChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEEec
Confidence 787542 223468999999653 23 3455667999999999999986544
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.7e-12 Score=100.86 Aligned_cols=112 Identities=20% Similarity=0.178 Sum_probs=78.2
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC-------------CcEEEcCCCCC----CCCCCceeeEE
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL-------------PLVSRADPHNL----PFFDEAFDVAF 153 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~-------------~~~~~~d~~~~----~~~~~~fD~i~ 153 (209)
..++++.+|||+|||+|..+..+++. +.++|+|+|+++.| +.++.+|+.+. ++ .++||+|+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i~ 146 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVIY 146 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEEE
Confidence 35689999999999999999999984 55699999999853 34667787652 22 35699998
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEEEecCC-------cccHHHHHHHhcccccc
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECA-------GREIKQIVELFRTSSFT 205 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~-------~~~~~~~~~l~~~~~~~ 205 (209)
+... ..-....+++++.++|||||.+++.+.... ....+...+.++..||.
T Consensus 147 ~d~~-~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~ 204 (226)
T PRK04266 147 QDVA-QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFE 204 (226)
T ss_pred ECCC-ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCe
Confidence 6321 100124568999999999999999644311 11122345777777773
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-12 Score=100.32 Aligned_cols=83 Identities=23% Similarity=0.258 Sum_probs=69.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC--------cEEEcCCCC-C-CCCCCceeeEEcccchhhh-CH
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------LVSRADPHN-L-PFFDEAFDVAFTAHLAEAL-FP 163 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~--------~~~~~d~~~-~-~~~~~~fD~i~~~~~~~~~-~~ 163 (209)
.++.+|||+|||+|..+..+++....+++|+|+++.++ +++++|+.+ + ++++++||+|+++++.+|+ ++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~ 91 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNP 91 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCH
Confidence 67889999999999999999874334889999998643 577888876 4 4778899999999988888 99
Q ss_pred HHHHHHHHHhcccC
Q 028410 164 SRFVGEMERTVKIG 177 (209)
Q Consensus 164 ~~~l~~~~r~Lkpg 177 (209)
..+++++.|.++++
T Consensus 92 ~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 92 EEILDEMLRVGRHA 105 (194)
T ss_pred HHHHHHHHHhCCeE
Confidence 99999998887653
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.8e-12 Score=99.96 Aligned_cols=89 Identities=24% Similarity=0.246 Sum_probs=69.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFT 154 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~ 154 (209)
..+++.+|||+|||+|+.+..+++. + .++|+++|+++.++ .++.+|..+....+++||+|++
T Consensus 69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~ 148 (205)
T PRK13944 69 EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIV 148 (205)
T ss_pred CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEE
Confidence 4578899999999999999999873 2 46999999998733 3677888765445679999999
Q ss_pred ccchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.....++ ..++.+.|||||++++.+..
T Consensus 149 ~~~~~~~-----~~~l~~~L~~gG~lvi~~~~ 175 (205)
T PRK13944 149 TAAASTI-----PSALVRQLKDGGVLVIPVEE 175 (205)
T ss_pred ccCcchh-----hHHHHHhcCcCcEEEEEEcC
Confidence 7654433 25788999999999887654
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-12 Score=98.12 Aligned_cols=90 Identities=12% Similarity=0.072 Sum_probs=68.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC-------------cEEEcCCCCCCCCCCceeeEEcccchhhh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-------------LVSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~-------------~~~~~d~~~~~~~~~~fD~i~~~~~~~~~ 161 (209)
....++||+|||.|.++..|+... .+++++|+|+.++ .+++.|+.+. .|+++||+|+++.+.+++
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL 119 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYL 119 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGS
T ss_pred cccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcC
Confidence 556899999999999999999984 5999999999844 4888888775 478999999999988888
Q ss_pred -CH---HHHHHHHHHhcccCcEEEEEEec
Q 028410 162 -FP---SRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 162 -~~---~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+. ..++..+...|+|||.+++....
T Consensus 120 ~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 120 DDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp SSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 33 46889999999999999888754
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.3e-12 Score=106.34 Aligned_cols=108 Identities=11% Similarity=0.074 Sum_probs=78.0
Q ss_pred CCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc------------------EEEcCCCCCCCCCCceeeEEccc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL------------------VSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~------------------~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
.+.+|||+|||+|..+..+++ .+..+|+++|.|+.+++ +...|.... +++++||+|+|+-
T Consensus 228 ~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNP 306 (378)
T PRK15001 228 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNP 306 (378)
T ss_pred cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECc
Confidence 346999999999999999988 45679999999987553 334444321 3456899999973
Q ss_pred chhh---h---CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 157 LAEA---L---FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 157 ~~~~---~---~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
-++. . ...+++.++.++|||||.++++....- .....+.++|+.+..+
T Consensus 307 Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l-~y~~~L~~~fg~~~~v 360 (378)
T PRK15001 307 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHL-DYFHKLKKIFGNCTTI 360 (378)
T ss_pred CcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCc-CHHHHHHHHcCCceEE
Confidence 3221 2 136789999999999999999975542 2335677788776654
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.5e-12 Score=105.64 Aligned_cols=106 Identities=15% Similarity=0.111 Sum_probs=79.3
Q ss_pred CCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcccchhh
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~~~~~~ 160 (209)
...+|||+|||+|..+..+++. +..+|+++|+|+.+++ +..+|.... .+++||+|+++..+|.
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRFDMIISNPPFHD 273 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCccEEEECCCccC
Confidence 3568999999999999999984 5569999999987553 455565442 3678999999854443
Q ss_pred h------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 161 L------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 161 ~------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
. ...++++++.+.|||||.++++.+..-.+ ...+.+.|+.++.
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y-~~~l~~~Fg~~~~ 322 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPY-PDLLDETFGSHEV 322 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCCh-HHHHHHHcCCeEE
Confidence 1 35889999999999999999987764222 2455667876655
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=6e-12 Score=104.38 Aligned_cols=102 Identities=20% Similarity=0.219 Sum_probs=77.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc----------------EEEcCCCCCCCCCCceeeEEcccch
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------VSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------------~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
.++.+|||+|||+|..+..+++.|..+|+++|+++.+++ +..++ ..+..+++||+|+++.+.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~~~ 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY--LEQPIEGKADVIVANILA 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc--cccccCCCceEEEEecCH
Confidence 577999999999999999988887779999999988553 22222 223346799999997543
Q ss_pred hhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccc
Q 028410 159 EALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTS 202 (209)
Q Consensus 159 ~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~ 202 (209)
. ....++.++.++|||||.+++..- ...+...+.+.+.+.
T Consensus 236 ~--~l~~ll~~~~~~LkpgG~li~sgi--~~~~~~~v~~~~~~~ 275 (288)
T TIGR00406 236 E--VIKELYPQFSRLVKPGGWLILSGI--LETQAQSVCDAYEQG 275 (288)
T ss_pred H--HHHHHHHHHHHHcCCCcEEEEEeC--cHhHHHHHHHHHHcc
Confidence 3 236788999999999999776543 345677777877765
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-11 Score=98.46 Aligned_cols=89 Identities=19% Similarity=0.208 Sum_probs=69.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.++++.+|||+|||+|+.+..+++. + .++|+++|+++.++ .++.+|......+++.||+|++.
T Consensus 73 ~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~ 152 (212)
T PRK13942 73 DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVT 152 (212)
T ss_pred CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEEC
Confidence 5688999999999999999998884 3 36999999998743 47888887765567899999986
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
..... ....+.+.|||||++++....
T Consensus 153 ~~~~~-----~~~~l~~~LkpgG~lvi~~~~ 178 (212)
T PRK13942 153 AAGPD-----IPKPLIEQLKDGGIMVIPVGS 178 (212)
T ss_pred CCccc-----chHHHHHhhCCCcEEEEEEcC
Confidence 43322 234677899999998887654
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=97.97 Aligned_cols=89 Identities=21% Similarity=0.278 Sum_probs=73.3
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCCCCC-CCceeeEEcccchh
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNLPFF-DEAFDVAFTAHLAE 159 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~-~~~fD~i~~~~~~~ 159 (209)
.+.+|||+|||+|..+..+++.+. +++++|+++.++ .+...|+.+.+.. +++||+|++.++.+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 478999999999999999988654 799999987633 3455666665543 37899999998888
Q ss_pred hh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 160 AL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 160 ~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+. ++..++.++.++|+|||.+++...
T Consensus 124 ~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 124 HVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 88 899999999999999999887653
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-11 Score=102.14 Aligned_cols=93 Identities=15% Similarity=0.085 Sum_probs=73.4
Q ss_pred hcccCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeE
Q 028410 90 GKSLLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVA 152 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i 152 (209)
....+++..+|||+|||+|..+..+++ .+..+++++|. +.+ +.++.+|+.+.++++ +|+|
T Consensus 143 ~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v 219 (306)
T TIGR02716 143 EEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAV 219 (306)
T ss_pred HHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEE
Confidence 333567889999999999999999988 46679999996 332 347888887766653 6999
Q ss_pred EcccchhhhCH---HHHHHHHHHhcccCcEEEEEEe
Q 028410 153 FTAHLAEALFP---SRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 153 ~~~~~~~~~~~---~~~l~~~~r~LkpgG~lil~~~ 185 (209)
++.++.++.++ ..+++++++.|||||++++...
T Consensus 220 ~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 220 LFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred EeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 98887776633 5789999999999999988843
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=99.36 Aligned_cols=108 Identities=21% Similarity=0.293 Sum_probs=81.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcccc-
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTAHL- 157 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~~~- 157 (209)
.++.+|||+|||+|..+..+++. +..+++|+|+++.++ .+..+|+.+ ++++++||+|+++.-
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPY 164 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCC
Confidence 34569999999999999999984 556999999998743 367778766 456789999998511
Q ss_pred -----hhhh---------------------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccccc
Q 028410 158 -----AEAL---------------------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFTE 206 (209)
Q Consensus 158 -----~~~~---------------------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~~ 206 (209)
.+.+ ....++.++.++|+|||.+++... ..+...+.+++.+.+|..
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~---~~~~~~~~~~l~~~gf~~ 236 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG---YDQGEAVRALFEAAGFAD 236 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC---ccHHHHHHHHHHhCCCCc
Confidence 0000 124678999999999999887654 456677888888888854
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.4e-12 Score=100.29 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=66.6
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc----C-CceEEEecCCCCCCc------------EEEcCCCCCCCCCCceeeEEcccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI----G-VADVTGVELMDSLPL------------VSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~----~-~~~v~~vD~s~~~~~------------~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
.++.+|||+|||+|..+..+++. | ..+++|+|+|+.+++ +...+...+++++++||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 56789999999999999888752 2 249999999998663 456666677777889999999999
Q ss_pred hhhh-CH--HHHHHHHHHhcc
Q 028410 158 AEAL-FP--SRFVGEMERTVK 175 (209)
Q Consensus 158 ~~~~-~~--~~~l~~~~r~Lk 175 (209)
.+|+ ++ ..+++++.|+++
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC
Confidence 8888 43 579999999998
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-11 Score=99.52 Aligned_cols=107 Identities=20% Similarity=0.310 Sum_probs=85.6
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC----------------cEEEcCCCCCC--CCCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP----------------LVSRADPHNLP--FFDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~----------------~~~~~d~~~~~--~~~~~fD~i~~~ 155 (209)
....+|||+|||+|..+..+++. +..++++||+++.+. +++++|+.++. ....+||+|+|+
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 45899999999999999999996 657999999999844 37888888754 344579999997
Q ss_pred c----------------chhh---hCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 156 H----------------LAEA---LFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 156 ~----------------~~~~---~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
- ..+| .+.+++++...+.|||||.+.++.+. +...++.+++++.++
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~---erl~ei~~~l~~~~~ 187 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP---ERLAEIIELLKSYNL 187 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH---HHHHHHHHHHHhcCC
Confidence 0 1111 14588999999999999999998884 567788888888776
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.3e-12 Score=98.59 Aligned_cols=85 Identities=16% Similarity=0.190 Sum_probs=67.7
Q ss_pred CeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcEEE----------------cCCCCCCCCCCceeeEEcccchhhh
Q 028410 98 SKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSR----------------ADPHNLPFFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~~~----------------~d~~~~~~~~~~fD~i~~~~~~~~~ 161 (209)
..++|+|||+|..++.++++ +.+|+|+|+|+.|+++.. .+..++--.+++.|+|++....|+.
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 39999999999999888988 469999999999887321 1112222238999999999999999
Q ss_pred CHHHHHHHHHHhcccCcEEEEE
Q 028410 162 FPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 162 ~~~~~l~~~~r~LkpgG~lil~ 183 (209)
|..++++++.|+||+.|-++.+
T Consensus 114 dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 114 DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred chHHHHHHHHHHcCCCCCEEEE
Confidence 9999999999999987744333
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-11 Score=94.91 Aligned_cols=108 Identities=13% Similarity=0.159 Sum_probs=81.1
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCCc----------------EEEcCCCCC-CCCCCceeeEE
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPL----------------VSRADPHNL-PFFDEAFDVAF 153 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~~----------------~~~~d~~~~-~~~~~~fD~i~ 153 (209)
.+.++.+|||+|||+|.++..++.. +.++|+++|+++.+++ ++.+|..+. +..++.||.|+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF 116 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence 5578999999999999999998773 3469999999987443 555666552 22346899999
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+.. ...++..++.++.+.|||||++++... ..+......+.+++.+|
T Consensus 117 ~~~--~~~~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 117 IGG--GSEKLKEIISASWEIIKKGGRIVIDAI--LLETVNNALSALENIGF 163 (198)
T ss_pred ECC--CcccHHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHHHHcCC
Confidence 843 112578899999999999999876443 34566777778877776
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-12 Score=103.54 Aligned_cols=107 Identities=22% Similarity=0.283 Sum_probs=78.6
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcEEEcC-----C-CC--CCCCCCceeeEEcccchhhhCHHH
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRAD-----P-HN--LPFFDEAFDVAFTAHLAEALFPSR 165 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~~~~d-----~-~~--~~~~~~~fD~i~~~~~~~~~~~~~ 165 (209)
..++.+|||+|||+|..+..+++.|..+|+|+|+++.+++....+ . .. ++..+.+||+|+++-..+ ....
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~~--~~~~ 194 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILAN--PLLE 194 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcHH--HHHH
Confidence 368899999999999999988887766799999999977632111 1 11 222223799999864332 2367
Q ss_pred HHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 166 FVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 166 ~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
++.++.++|||||.+++... ...+...+.+.+.+.||
T Consensus 195 l~~~~~~~LkpgG~lilsgi--~~~~~~~v~~~l~~~Gf 231 (250)
T PRK00517 195 LAPDLARLLKPGGRLILSGI--LEEQADEVLEAYEEAGF 231 (250)
T ss_pred HHHHHHHhcCCCcEEEEEEC--cHhhHHHHHHHHHHCCC
Confidence 78999999999999877633 24567788888888887
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-11 Score=102.54 Aligned_cols=94 Identities=23% Similarity=0.291 Sum_probs=76.4
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEccc
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
...+++.+|||.|||+|.++...+..+ .+++|+|+++.++ .+.++|+.++++++++||+|+++.
T Consensus 178 ~~~~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dP 256 (329)
T TIGR01177 178 ARVTEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDP 256 (329)
T ss_pred hCCCCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECC
Confidence 356889999999999999998877776 4999999998743 377899999998889999999962
Q ss_pred c-------hhh-h--CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 157 L-------AEA-L--FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 157 ~-------~~~-~--~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
- ..+ . ...+++.++.++|||||++++.+..
T Consensus 257 Pyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 257 PYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred CCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 1 111 1 1478999999999999998888765
|
This family is found exclusively in the Archaea. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-11 Score=93.74 Aligned_cols=106 Identities=25% Similarity=0.351 Sum_probs=79.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC-----------------cEEEcCCCCCCCCCCceeeEEcccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-----------------LVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~-----------------~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
.++.+|||+|||+|..+..++..+ .+++++|+++.++ .++.+|..+ ++++++||+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCC
Confidence 577899999999999999999885 5999999998744 345666554 344568999998632
Q ss_pred hhh---------------------h-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 158 AEA---------------------L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 158 ~~~---------------------~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
... . ....+++++.++|||||.+++..... .....+.+++.+.+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~--~~~~~l~~~~~~~g~ 166 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL--TGEDEVLEYLEKLGF 166 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc--CCHHHHHHHHHHCCC
Confidence 111 0 13668999999999999988877653 345667888888777
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-11 Score=97.43 Aligned_cols=108 Identities=22% Similarity=0.248 Sum_probs=85.9
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------------------cEEEcCCCCCCCC
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------------------LVSRADPHNLPFF 145 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------------------~~~~~d~~~~~~~ 145 (209)
...++.+||+.|||.|..+.+|++.|+ +|+|+|+|+.++ .+.++|+.+++..
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 335678999999999999999999998 899999997633 3678888887632
Q ss_pred ---CCceeeEEcccchhhhCH---HHHHHHHHHhcccCcEEEEEEecCCc--------ccHHHHHHHhcc
Q 028410 146 ---DEAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEECAG--------REIKQIVELFRT 201 (209)
Q Consensus 146 ---~~~fD~i~~~~~~~~~~~---~~~l~~~~r~LkpgG~lil~~~~~~~--------~~~~~~~~l~~~ 201 (209)
.+.||+|+-...+.++.+ .+..+.+.+.|+|||.+++++...+. -...++.++|..
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~ 188 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFSA 188 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhccC
Confidence 268999998877777743 78889999999999999988765321 245677778864
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.8e-11 Score=95.47 Aligned_cols=89 Identities=20% Similarity=0.225 Sum_probs=69.0
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.++++.+|||+|||+|..+..+++. + .++|+++|+++.++ .++.+|..+.....++||+|++.
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 153 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT 153 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc
Confidence 4578999999999999999999985 3 35799999998744 36778887654445789999986
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.... .+...+.+.|||||++++.+..
T Consensus 154 ~~~~-----~~~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 154 AAGP-----KIPEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred CCcc-----cccHHHHHhcCcCcEEEEEEcC
Confidence 4332 2345688999999999887764
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.2e-11 Score=96.02 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=67.8
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcccc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
..++.+|||+|||+|..+..+++.+. +++|+|+++.++ .+.++|+.+.+ ++||+|++..+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 35689999999999999999998754 999999998754 36677776664 78999999877
Q ss_pred hhhh---CHHHHHHHHHHhcccCcEEEE
Q 028410 158 AEAL---FPSRFVGEMERTVKIGGVCMV 182 (209)
Q Consensus 158 ~~~~---~~~~~l~~~~r~LkpgG~lil 182 (209)
.++. +...++.++.+.+++++.+.+
T Consensus 129 l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 129 LIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 6655 346788999999987766543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.24 E-value=6e-12 Score=90.15 Aligned_cols=89 Identities=30% Similarity=0.372 Sum_probs=69.8
Q ss_pred CCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------------cEEEcCCCCCC--CCCCceeeEEcccch
Q 028410 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------------LVSRADPHNLP--FFDEAFDVAFTAHLA 158 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~--~~~~~fD~i~~~~~~ 158 (209)
|.+|||+|||+|.++..+++.+..+++|+|+++..+ ++.++|..+.. +++++||+|+++--.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 468999999999999999997656999999999833 47788887764 778999999997221
Q ss_pred h--hh-------CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 159 E--AL-------FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 159 ~--~~-------~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
. .. ....+++++.+.|||||.+++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 1 11 136889999999999999988875
|
... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-11 Score=100.24 Aligned_cols=107 Identities=22% Similarity=0.290 Sum_probs=79.6
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcEEEcC--------------CCCCCCC-CCceeeEEcccchh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRAD--------------PHNLPFF-DEAFDVAFTAHLAE 159 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~~~~d--------------~~~~~~~-~~~fD~i~~~~~~~ 159 (209)
+++.+|||+|||||.++++.++.|..+++|+|++|.+++.-.-+ ......+ .++||+|+++=+.+
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~ 240 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAE 240 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhHH
Confidence 69999999999999999999999998999999999866411111 1111223 36999999964433
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
. ...+..++.+.+||||.++++--- ..+.+.+.+.+.+.+|.
T Consensus 241 v--l~~La~~~~~~lkpgg~lIlSGIl--~~q~~~V~~a~~~~gf~ 282 (300)
T COG2264 241 V--LVELAPDIKRLLKPGGRLILSGIL--EDQAESVAEAYEQAGFE 282 (300)
T ss_pred H--HHHHHHHHHHHcCCCceEEEEeeh--HhHHHHHHHHHHhCCCe
Confidence 1 257788999999999997666422 34677888888877773
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.2e-11 Score=102.15 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=74.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC---------------cEEEcCCCCC--CCCCCceeeEEccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP---------------LVSRADPHNL--PFFDEAFDVAFTAH 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~---------------~~~~~d~~~~--~~~~~~fD~i~~~~ 156 (209)
..+..+||||||+|.++..+|. .+...++|+|+++.++ .++++|+..+ .++++++|.|+++.
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 4567999999999999999998 5667999999998744 3778888654 47889999999863
Q ss_pred chhhh-------CHHHHHHHHHHhcccCcEEEEEEecCC
Q 028410 157 LAEAL-------FPSRFVGEMERTVKIGGVCMVLMEECA 188 (209)
Q Consensus 157 ~~~~~-------~~~~~l~~~~r~LkpgG~lil~~~~~~ 188 (209)
-..+. ....++.++.|+|||||.+.+.+....
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~ 239 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSEL 239 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHH
Confidence 22211 126899999999999999888777643
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.4e-11 Score=93.20 Aligned_cols=113 Identities=24% Similarity=0.261 Sum_probs=94.0
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC-----------------cEEEcCCCC--CCCCCCceeeEEc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-----------------LVSRADPHN--LPFFDEAFDVAFT 154 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~-----------------~~~~~d~~~--~~~~~~~fD~i~~ 154 (209)
.+.+.+|||.+.|-|+.+....+.|...|+.++.++..+ +++.||+.+ -.|+|++||+|+.
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 367999999999999999999999877999999998844 366777766 2478999999998
Q ss_pred c----cchhhhCHHHHHHHHHHhcccCcEEEEEEecCC-----cccHHHHHHHhccccccc
Q 028410 155 A----HLAEALFPSRFVGEMERTVKIGGVCMVLMEECA-----GREIKQIVELFRTSSFTE 206 (209)
Q Consensus 155 ~----~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~-----~~~~~~~~~l~~~~~~~~ 206 (209)
. ....++...++..|++|+|||||.++-.+..++ -+-.+.+.+.+++.||.+
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~ 272 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEV 272 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCcee
Confidence 5 233355779999999999999999988887764 467788999999999974
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-10 Score=96.11 Aligned_cols=91 Identities=15% Similarity=0.155 Sum_probs=69.3
Q ss_pred CCCCeEEEEcCCCChhH-HHHH-h-cCCceEEEecCCCCC-----------------CcEEEcCCCCCCCCCCceeeEEc
Q 028410 95 FNHSKVLCVSAGAGHEV-MAFN-S-IGVADVTGVELMDSL-----------------PLVSRADPHNLPFFDEAFDVAFT 154 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~-~~la-~-~~~~~v~~vD~s~~~-----------------~~~~~~d~~~~~~~~~~fD~i~~ 154 (209)
.++.+|+|||||.|.++ ..++ . .+.++++|+|+++++ +.|..+|+.+.+-..+.||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 47899999999977443 3333 3 356799999999863 44888888876433578999999
Q ss_pred ccchhh--hCHHHHHHHHHHhcccCcEEEEEEe
Q 028410 155 AHLAEA--LFPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 155 ~~~~~~--~~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
..+.+. -++.++++++.+.|+|||.+++-..
T Consensus 202 ~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 202 AALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred ecccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 833333 2789999999999999999777653
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.6e-11 Score=98.39 Aligned_cols=104 Identities=16% Similarity=0.260 Sum_probs=76.4
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcccchh
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
..++.+|||+|||||.++...++.|.++|+|+|+++.+++ +..... .....++||+|+++=+..
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~--~~~~~~~~dlvvANI~~~ 236 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS--EDLVEGKFDLVVANILAD 236 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT--SCTCCS-EEEEEEES-HH
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe--cccccccCCEEEECCCHH
Confidence 3778899999999999999999999889999999998553 222222 223458999999964333
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
. ...+...+.++|||||.++++--- ..+...+.+.|++ +|
T Consensus 237 v--L~~l~~~~~~~l~~~G~lIlSGIl--~~~~~~v~~a~~~-g~ 276 (295)
T PF06325_consen 237 V--LLELAPDIASLLKPGGYLILSGIL--EEQEDEVIEAYKQ-GF 276 (295)
T ss_dssp H--HHHHHHHCHHHEEEEEEEEEEEEE--GGGHHHHHHHHHT-TE
T ss_pred H--HHHHHHHHHHhhCCCCEEEEcccc--HHHHHHHHHHHHC-CC
Confidence 2 256778899999999997765322 4577888888876 76
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.6e-11 Score=97.28 Aligned_cols=106 Identities=16% Similarity=0.229 Sum_probs=77.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcc--
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTA-- 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~-- 155 (209)
.++.+|||+|||+|..+..++.. +..+++++|+|+.++ .++.+|+.+ ++++++||+|+++
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPP 198 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCC
Confidence 34579999999999999999984 446999999998744 367777654 2345689999996
Q ss_pred cc--------hhh--hC--------------HHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 156 HL--------AEA--LF--------------PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 156 ~~--------~~~--~~--------------~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
++ ... .+ ...++.++.++|||||++++-+.. +...+.+++...++.
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~----~~~~v~~~~~~~~~~ 268 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN----SMEALEEAYPDVPFT 268 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc----CHHHHHHHHHhCCCc
Confidence 11 000 01 256788999999999998776653 235788888777653
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=90.97 Aligned_cols=103 Identities=16% Similarity=0.067 Sum_probs=71.8
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC---------------cEEEcCCCC-CCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP---------------LVSRADPHN-LPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~---------------~~~~~d~~~-~~~~~~~fD~i~~~ 155 (209)
...++.+|||+|||+|..+..++.. +.++|+++|+++.++ .++.+|+.+ ++.....+|.++..
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~ 116 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE 116 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE
Confidence 4468899999999999999999873 446999999998744 355666644 22212345666542
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhc
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~ 200 (209)
. ..+...+++++.+.|||||++++.... ......+.+.++
T Consensus 117 ~---~~~~~~~l~~~~~~LkpgG~li~~~~~--~~~~~~~~~~~~ 156 (196)
T PRK07402 117 G---GRPIKEILQAVWQYLKPGGRLVATASS--LEGLYAISEGLA 156 (196)
T ss_pred C---CcCHHHHHHHHHHhcCCCeEEEEEeec--HHHHHHHHHHHH
Confidence 2 124678999999999999998877654 334444555554
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.9e-11 Score=92.81 Aligned_cols=87 Identities=20% Similarity=0.193 Sum_probs=67.1
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
..+++.+|||+|||+|..+..+++.. ++++++|+++.++ ++..+|..+...+.++||+|++...
T Consensus 75 ~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 75 ELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence 55788999999999999999888864 4899999998743 3667776553223578999998654
Q ss_pred hhhhCHHHHHHHHHHhcccCcEEEEEEe
Q 028410 158 AEALFPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 158 ~~~~~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
..+ +..++.+.|+|||++++...
T Consensus 154 ~~~-----~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 154 APE-----IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred chh-----hhHHHHHhcCCCcEEEEEEc
Confidence 332 24567899999999988877
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-10 Score=99.95 Aligned_cols=107 Identities=9% Similarity=0.082 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc--------------EEEcCCCCCCCC-CCceeeEEccc--
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL--------------VSRADPHNLPFF-DEAFDVAFTAH-- 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~-~~~fD~i~~~~-- 156 (209)
.++.+|||+|||+|..+..++. .+..+++++|+|+.+++ ++++|+.+..++ +++||+|+|+-
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 4567999999999999999887 45569999999998553 677887654332 46899999962
Q ss_pred chh---h-------------h----C----HHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 157 LAE---A-------------L----F----PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 157 ~~~---~-------------~----~----~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+.. . + + ...++.++.+.|+|||.+++... ..+...+.+++...+|
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG---~~Q~e~V~~ll~~~Gf 398 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG---FDQGAAVRGVLAENGF 398 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC---ccHHHHHHHHHHHCCC
Confidence 110 0 0 1 24667777889999999776554 4677788888887776
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-10 Score=95.22 Aligned_cols=110 Identities=18% Similarity=0.094 Sum_probs=81.1
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc---------------EEEcCCCCCCCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL---------------VSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~---------------~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
....+.+|||+|||.|..+..+++ .|..+++-+|.|..+++ +...|..... ++ +||+|+|+-
T Consensus 155 ~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v-~~-kfd~IisNP 232 (300)
T COG2813 155 PPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV-EG-KFDLIISNP 232 (300)
T ss_pred CccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-cc-cccEEEeCC
Confidence 335556999999999999999999 56789999999987553 3444443332 23 999999984
Q ss_pred chhhh-C-----HHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 157 LAEAL-F-----PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 157 ~~~~~-~-----~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
-+|.- + ..+++.+..+.|++||.+.++.+. .-.-...+.++|+.++.+
T Consensus 233 Pfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~-~l~y~~~L~~~Fg~v~~l 286 (300)
T COG2813 233 PFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANR-HLPYEKKLKELFGNVEVL 286 (300)
T ss_pred CccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcC-CCChHHHHHHhcCCEEEE
Confidence 33322 1 268999999999999999999883 233455677788876654
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.2e-12 Score=98.63 Aligned_cols=103 Identities=18% Similarity=0.264 Sum_probs=81.2
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc----------EEEcCCCCC-C-CCCCceee
Q 028410 84 FFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------VSRADPHNL-P-FFDEAFDV 151 (209)
Q Consensus 84 ~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------~~~~d~~~~-~-~~~~~fD~ 151 (209)
.+..++......+-.++||+|||||..+..+... ...++|+|+|++|++ ..+.+...+ + ..++.||+
T Consensus 113 ~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DL 191 (287)
T COG4976 113 LLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDL 191 (287)
T ss_pred HHHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccc
Confidence 3444444444566789999999999999999986 359999999999986 123333221 1 45789999
Q ss_pred EEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 152 AFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 152 i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
|.+..|..++ +...++.-....|+|||.+.+++...
T Consensus 192 i~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 192 IVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred hhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEeccc
Confidence 9999999999 89999999999999999999988764
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-10 Score=88.59 Aligned_cols=107 Identities=20% Similarity=0.352 Sum_probs=81.9
Q ss_pred CCeEEEEcCCCChhHHHHHhcCC-ceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 97 HSKVLCVSAGAGHEVMAFNSIGV-ADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~~~-~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
-.+|||+|||.|.....|++-|+ +..+|+|.|++++ .|.+.|+.+..+..++||+|.--....
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 34999999999999999999654 3599999999844 488999998888888888887642222
Q ss_pred hh--C-------HHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccccc
Q 028410 160 AL--F-------PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFTE 206 (209)
Q Consensus 160 ~~--~-------~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~~ 206 (209)
.+ . +...+..+.+.|+|||.++|... +....++.+.|...+|+.
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC---N~T~dELv~~f~~~~f~~ 200 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC---NFTKDELVEEFENFNFEY 200 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEec---CccHHHHHHHHhcCCeEE
Confidence 11 1 23456778899999999766544 678889999998887743
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-10 Score=93.87 Aligned_cols=108 Identities=20% Similarity=0.270 Sum_probs=79.1
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEccc-
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTAH- 156 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~~- 156 (209)
..++.+|||+|||+|..+..++.. +..+++++|+++.++ .+..+|+.+. +++++||+|+++.
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npP 184 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGGRFDLIVSNPP 184 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCCceeEEEECCC
Confidence 357789999999999999999984 456999999998643 3666776442 2357999999851
Q ss_pred -ch----h--------------------hh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 157 -LA----E--------------------AL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 157 -~~----~--------------------~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
+. . .+ ....++.++.+.|||||.+++... ..+...+.+++...+|.
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g---~~~~~~~~~~l~~~gf~ 256 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG---YDQGEAVRALLAAAGFA 256 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC---chHHHHHHHHHHhCCCc
Confidence 10 0 01 135678888999999999887553 44566788888877764
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.9e-10 Score=86.45 Aligned_cols=107 Identities=12% Similarity=-0.005 Sum_probs=82.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc---------------EEEcCCCCCCCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL---------------VSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~---------------~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
.++++++++|||||||..+.+++.. +.++|+++|-++++++ ++.+++.+.--...+||.||...
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGG 110 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGG 110 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECC
Confidence 6699999999999999999999963 5689999999988553 66777665311222799999865
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
- .....+++.+...|||||+++.-... -+......+.+++.++
T Consensus 111 g---~~i~~ile~~~~~l~~ggrlV~nait--lE~~~~a~~~~~~~g~ 153 (187)
T COG2242 111 G---GNIEEILEAAWERLKPGGRLVANAIT--LETLAKALEALEQLGG 153 (187)
T ss_pred C---CCHHHHHHHHHHHcCcCCeEEEEeec--HHHHHHHHHHHHHcCC
Confidence 4 24788999999999999996655443 4567777777877776
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-10 Score=93.64 Aligned_cols=106 Identities=17% Similarity=0.192 Sum_probs=78.2
Q ss_pred CCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc------------EEEcCCCCC-C-CCCCceeeEEccc--ch
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL------------VSRADPHNL-P-FFDEAFDVAFTAH--LA 158 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~------------~~~~d~~~~-~-~~~~~fD~i~~~~--~~ 158 (209)
++.+|||+|||+|..+..+++ .+..+++++|+|+.+++ ++++|+.+. + ...++||+|+++- +.
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 346899999999999999987 44459999999998553 677887652 2 1135799999972 11
Q ss_pred ----hh-------------h----C----HHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 159 ----EA-------------L----F----PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 159 ----~~-------------~----~----~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
.. + + ..+++..+.++|||||.+++.... .+...+.+++++++|
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~---~~~~~v~~~l~~~g~ 233 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE---RQAPLAVEAFARAGL 233 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---chHHHHHHHHHHCCC
Confidence 00 0 0 247778888999999999887764 456778888888777
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-10 Score=93.17 Aligned_cols=88 Identities=17% Similarity=0.248 Sum_probs=74.4
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc------EEEcCCCCCCCCCCceeeEEcccchhhh-CHHHHHH
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL------VSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSRFVG 168 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~------~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l~ 168 (209)
...++||+|+|.|..+..++.. +.+|++.|.|+.|.. +.+.+..++.-.+.+||+|.|.++.... +|..+++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~~LL~ 172 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPLTLLR 172 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCHHHHHH
Confidence 4678999999999999999986 569999999999764 4455555555456789999998877666 9999999
Q ss_pred HHHHhcccCcEEEEEE
Q 028410 169 EMERTVKIGGVCMVLM 184 (209)
Q Consensus 169 ~~~r~LkpgG~lil~~ 184 (209)
++++.|+|+|++++.+
T Consensus 173 ~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 173 DIRRALKPNGRLILAV 188 (265)
T ss_pred HHHHHhCCCCEEEEEE
Confidence 9999999999999885
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-10 Score=79.80 Aligned_cols=85 Identities=33% Similarity=0.417 Sum_probs=69.5
Q ss_pred eEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCCCC-CCCceeeEEcccchhh-h
Q 028410 99 KVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNLPF-FDEAFDVAFTAHLAEA-L 161 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~-~~~~fD~i~~~~~~~~-~ 161 (209)
+++|+|||+|..+..+++.+..+++++|+++..+ .+..+|+.+... ..++||+|+++...++ .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 5899999999999999884456999999987632 366777777553 5678999999887766 4
Q ss_pred -CHHHHHHHHHHhcccCcEEEEE
Q 028410 162 -FPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 162 -~~~~~l~~~~r~LkpgG~lil~ 183 (209)
....+++.+.+.+||||.+++.
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 7799999999999999998765
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-10 Score=95.15 Aligned_cols=103 Identities=16% Similarity=0.232 Sum_probs=74.5
Q ss_pred CeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcc--cc-
Q 028410 98 SKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTA--HL- 157 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~--~~- 157 (209)
.+|||+|||+|..+..++.. +..+|+++|+|+.++ .++++|+.+ ++++++||+|+++ ++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence 69999999999999999984 446999999999744 366777655 3444589999996 11
Q ss_pred ----------hhh------------h-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhc-cccc
Q 028410 158 ----------AEA------------L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR-TSSF 204 (209)
Q Consensus 158 ----------~~~------------~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~-~~~~ 204 (209)
..+ + ....++.++.+.|+|||.+++-+. +.+...+.+++. ..+|
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g---~~q~~~~~~~~~~~~~~ 262 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG---NWQQKSLKELLRIKFTW 262 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC---ccHHHHHHHHHHhcCCC
Confidence 000 0 235688899999999999877665 345566666666 3344
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.7e-11 Score=96.46 Aligned_cols=107 Identities=25% Similarity=0.351 Sum_probs=80.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------------------------EEEcCCCCCCCC
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------------------VSRADPHNLPFF 145 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------------------------~~~~d~~~~~~~ 145 (209)
...++.+||..|||.|.....|++.|+ +|+|+|+|+.+++ +.++|+.+++-.
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 457788999999999999999999998 9999999987442 567888887643
Q ss_pred C-CceeeEEcccchhhhC---HHHHHHHHHHhcccCcEEEEEEecCC---------cccHHHHHHHhc
Q 028410 146 D-EAFDVAFTAHLAEALF---PSRFVGEMERTVKIGGVCMVLMEECA---------GREIKQIVELFR 200 (209)
Q Consensus 146 ~-~~fD~i~~~~~~~~~~---~~~~l~~~~r~LkpgG~lil~~~~~~---------~~~~~~~~~l~~ 200 (209)
. ++||+|+-...+..+. ..+..+.+.++|||||.+++++-... .-...++.++|.
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~ 180 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG 180 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc
Confidence 3 5799999987777663 48889999999999999544443311 235566777777
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.3e-10 Score=99.83 Aligned_cols=109 Identities=15% Similarity=0.122 Sum_probs=77.3
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc--------------E--EEcCCCCCCC--CCCceeeEE
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL--------------V--SRADPHNLPF--FDEAFDVAF 153 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~--------------~--~~~d~~~~~~--~~~~fD~i~ 153 (209)
...++.+|||+|||+|..+..+++ .+.++|+++|+++.+++ + ..+|....+. ++++||.|+
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vl 314 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRIL 314 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEE
Confidence 346789999999999999999998 45579999999998543 2 4455544443 567899999
Q ss_pred cc------cchhhh-C----------------HHHHHHHHHHhcccCcEEEEEEecCCcccHHH-HHHHhcc
Q 028410 154 TA------HLAEAL-F----------------PSRFVGEMERTVKIGGVCMVLMEECAGREIKQ-IVELFRT 201 (209)
Q Consensus 154 ~~------~~~~~~-~----------------~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~-~~~l~~~ 201 (209)
+. .+.... + ..+++.++.++|||||.+++++.+....+... +..++++
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~ 386 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQE 386 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHh
Confidence 63 122111 1 36799999999999999999988764433333 3344443
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.2e-10 Score=94.61 Aligned_cols=93 Identities=11% Similarity=0.035 Sum_probs=68.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcC--CceEEEecCCCCCCc----------------EEEcCCCC-CCCCCC----ceee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIG--VADVTGVELMDSLPL----------------VSRADPHN-LPFFDE----AFDV 151 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~--~~~v~~vD~s~~~~~----------------~~~~d~~~-~~~~~~----~fD~ 151 (209)
.++.+|||+|||+|..+..+++.. ..+++++|+|+.|++ ++++|+.+ .+++.. ...+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 567899999999999999998842 249999999998642 46788876 444332 2334
Q ss_pred EEcccchhhh---CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 152 AFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 152 i~~~~~~~~~---~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
+++....+++ +...++++++++|+|||.+++.+...
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 4444444444 34678999999999999988876553
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.9e-10 Score=94.30 Aligned_cols=102 Identities=17% Similarity=0.265 Sum_probs=74.2
Q ss_pred CeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEccc--c-
Q 028410 98 SKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAH--L- 157 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~--~- 157 (209)
.+|||+|||+|..+..++. .+..+|+++|+|+.++ .++.+|+.+ ++++++||+|+++- +
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCC
Confidence 6899999999999999988 4556999999998744 367778654 23456899999961 1
Q ss_pred -------hhh---------------h-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 158 -------AEA---------------L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 158 -------~~~---------------~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
... + ....+++++.+.|+|||.+++-+.. . ...+.++|...++
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~---~-~~~~~~~~~~~~~ 279 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN---S-RVHLEEAYPDVPF 279 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc---C-HHHHHHHHhhCCC
Confidence 000 0 1257789999999999998776553 2 3357777776655
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=5e-10 Score=97.98 Aligned_cols=109 Identities=16% Similarity=0.106 Sum_probs=79.4
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC---------------cEEEcCCCCCC----CCCCceee
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP---------------LVSRADPHNLP----FFDEAFDV 151 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~---------------~~~~~d~~~~~----~~~~~fD~ 151 (209)
...++.+|||+|||+|..+..+++. +.++|+++|+++.++ .++.+|+.+++ +.+++||.
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDR 328 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCE
Confidence 3467899999999999999999884 346999999998744 36778887765 44678999
Q ss_pred EEcc------cchhhh-C----------------HHHHHHHHHHhcccCcEEEEEEecCCccc-HHHHHHHhcc
Q 028410 152 AFTA------HLAEAL-F----------------PSRFVGEMERTVKIGGVCMVLMEECAGRE-IKQIVELFRT 201 (209)
Q Consensus 152 i~~~------~~~~~~-~----------------~~~~l~~~~r~LkpgG~lil~~~~~~~~~-~~~~~~l~~~ 201 (209)
|++. .+.... + ..+++.++.+.|||||+++.++......+ ...+.+++++
T Consensus 329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402 (434)
T ss_pred EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHh
Confidence 9963 111111 1 36789999999999999988877654433 3334445544
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.1e-10 Score=98.76 Aligned_cols=107 Identities=16% Similarity=0.135 Sum_probs=77.6
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcc-
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTA- 155 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~- 155 (209)
..++.+|||+|||+|..+..+++. +.++|+++|+++.++ .++.+|+.+++ ++++||.|++.
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~ 326 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDA 326 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcC
Confidence 367899999999999999988873 346999999999854 36777887765 56789999963
Q ss_pred ---c--ch-------hhhC----------HHHHHHHHHHhcccCcEEEEEEecCCcccHHH-HHHHhcc
Q 028410 156 ---H--LA-------EALF----------PSRFVGEMERTVKIGGVCMVLMEECAGREIKQ-IVELFRT 201 (209)
Q Consensus 156 ---~--~~-------~~~~----------~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~-~~~l~~~ 201 (209)
. +. +... ..+++.++.+.|||||++++.+.+....+... +.+++++
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 1 10 0111 24689999999999999999987765444333 3344443
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.4e-10 Score=92.80 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=76.6
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
..+++.+|||+|||+|..+..+++. +.+.|+++|+++.++ .+...|..+++...+.||.|++.
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D 147 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLD 147 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEc
Confidence 3478899999999999999999883 246999999998744 35667776665555679999973
Q ss_pred ----c--chh------------h---h--CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHH
Q 028410 156 ----H--LAE------------A---L--FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVE 197 (209)
Q Consensus 156 ----~--~~~------------~---~--~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~ 197 (209)
. +.. . + ...+++.++.+.|||||+++.++......+.....+
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~ 212 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVD 212 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHH
Confidence 1 100 0 0 125689999999999999998887765554444444
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.5e-10 Score=89.79 Aligned_cols=82 Identities=12% Similarity=0.165 Sum_probs=61.7
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcccc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
..++.+|||+|||+|..+..+++.+. .++|+|+|+.++ .+..+| ++..+++||+|++..+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~ 136 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDV 136 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcch
Confidence 35678999999999999999998765 799999998754 245555 3344688999999887
Q ss_pred hhhh---CHHHHHHHHHHhcccCcE
Q 028410 158 AEAL---FPSRFVGEMERTVKIGGV 179 (209)
Q Consensus 158 ~~~~---~~~~~l~~~~r~LkpgG~ 179 (209)
.+|. +...+++++.+.+++++.
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEE
Confidence 7664 235677888776654443
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.6e-10 Score=90.98 Aligned_cols=110 Identities=14% Similarity=0.114 Sum_probs=83.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc----------EEEcCCCCCCCCCCceeeEEcccchhhh--
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL----------VSRADPHNLPFFDEAFDVAFTAHLAEAL-- 161 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~----------~~~~d~~~~~~~~~~fD~i~~~~~~~~~-- 161 (209)
....+|||+|||+|..+..++.. +..+|+++|+++.+++ ++++|+.+... +++||+|+++.-..+.
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINT 141 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCc
Confidence 45679999999999999888774 3359999999998654 77888887653 5789999996222211
Q ss_pred -------------------CHHHHHHHHHHhcccCcEEEEEEecCC----cccHHHHHHHhcccccc
Q 028410 162 -------------------FPSRFVGEMERTVKIGGVCMVLMEECA----GREIKQIVELFRTSSFT 205 (209)
Q Consensus 162 -------------------~~~~~l~~~~r~LkpgG~lil~~~~~~----~~~~~~~~~l~~~~~~~ 205 (209)
...+++.....+|+|+|.+.++..... .-...+..++++.+||+
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence 124677888899999999888876643 34677788899988885
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.6e-10 Score=87.91 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=88.3
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHh-c-CCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEE
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNS-I-GVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAF 153 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~-~-~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~ 153 (209)
..+.++.+|+|.|.|||..+.+|+. . +.++|+++|+-++. +.+..+|+.+..+++ .||.|+
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~ 168 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVF 168 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEE
Confidence 3679999999999999999999997 3 56899999998872 336678888877655 999997
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccccc
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFTE 206 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~~ 206 (209)
. .-.+|..++..+.+.|||||. +++..+..+|...+.+.++..+|++
T Consensus 169 L----Dmp~PW~~le~~~~~Lkpgg~--~~~y~P~veQv~kt~~~l~~~g~~~ 215 (256)
T COG2519 169 L----DLPDPWNVLEHVSDALKPGGV--VVVYSPTVEQVEKTVEALRERGFVD 215 (256)
T ss_pred E----cCCChHHHHHHHHHHhCCCcE--EEEEcCCHHHHHHHHHHHHhcCccc
Confidence 7 223699999999999999999 4555555778888888888888865
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.5e-10 Score=94.68 Aligned_cols=83 Identities=8% Similarity=0.145 Sum_probs=59.4
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------------EEEcCCCCCCCCCCceeeEEcc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------------VSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------------~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++ +..+|+.+ .+++||+|+|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~---l~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES---LSGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh---cCCCcCEEEEc
Confidence 578999999999999999999875 9999999998653 23334332 25889999998
Q ss_pred cchhhh-CH--HHHHHHHHHhcccCcEEEEEE
Q 028410 156 HLAEAL-FP--SRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 156 ~~~~~~-~~--~~~l~~~~r~LkpgG~lil~~ 184 (209)
.+.+|. +. ..+++.+.+ +.+||. ++.+
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~ 249 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLAS-LAEKRL-IISF 249 (315)
T ss_pred CEEEecCHHHHHHHHHHHHh-hcCCEE-EEEe
Confidence 877666 22 345555554 455555 4443
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.2e-10 Score=100.01 Aligned_cols=105 Identities=11% Similarity=0.183 Sum_probs=75.8
Q ss_pred CCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc----------------EEEcCCCCCCCCCCceeeEEcc--c
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL----------------VSRADPHNLPFFDEAFDVAFTA--H 156 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~----------------~~~~d~~~~~~~~~~fD~i~~~--~ 156 (209)
++.+|||+|||+|..+..++. .+..+|+++|+|+.+++ ++.+|+.+ ++++++||+|+++ +
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 356899999999999999887 45569999999987443 45666543 2345689999996 1
Q ss_pred ch---------hh--------h--------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 157 LA---------EA--------L--------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 157 ~~---------~~--------~--------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+. +. + ....++.++.++|+|||.+++.+. ..+...+.+++.+.++
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig---~~q~~~v~~~~~~~g~ 286 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG---FKQEEAVTQIFLDHGY 286 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC---CchHHHHHHHHHhcCC
Confidence 10 00 0 124567788899999999877544 5577778888877765
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.1e-10 Score=98.34 Aligned_cols=108 Identities=18% Similarity=0.236 Sum_probs=79.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC---------------cEEEcCCCCCC-CCCCceeeEEc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP---------------LVSRADPHNLP-FFDEAFDVAFT 154 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~---------------~~~~~d~~~~~-~~~~~fD~i~~ 154 (209)
...++.+|||+|||+|..+.++++. +.++|+++|+++.++ .+.++|..+++ +.+++||.|++
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence 3478899999999999999999884 357999999999854 36778887765 45678999997
Q ss_pred c------cchh-------h--------h--CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHH-HHHhc
Q 028410 155 A------HLAE-------A--------L--FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQI-VELFR 200 (209)
Q Consensus 155 ~------~~~~-------~--------~--~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~-~~l~~ 200 (209)
. .+.. . + ...+++.++.+.|||||.++.++.+....+.... .+++.
T Consensus 314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~ 383 (431)
T PRK14903 314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY 383 (431)
T ss_pred CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence 3 1110 0 0 1266789999999999999998887654444443 34443
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.6e-10 Score=97.02 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=77.8
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC--------------cEEEcCCCCCC--CCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP--------------LVSRADPHNLP--FFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~--------------~~~~~d~~~~~--~~~~~fD~i~~~ 155 (209)
...++.+|||+|||+|..+..+++. +.++|+++|+++.++ .++.+|+.+++ +++++||.|+++
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEEC
Confidence 3478899999999999999999985 336999999999854 36788887754 346789999953
Q ss_pred c------chh------hh-C----------HHHHHHHHHHhcccCcEEEEEEecCCc-ccHHHHHHHhcc
Q 028410 156 H------LAE------AL-F----------PSRFVGEMERTVKIGGVCMVLMEECAG-REIKQIVELFRT 201 (209)
Q Consensus 156 ~------~~~------~~-~----------~~~~l~~~~r~LkpgG~lil~~~~~~~-~~~~~~~~l~~~ 201 (209)
. +.. +. . ..+++.++.+.|||||.+++.+..... +....+..++++
T Consensus 321 ~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 321 APCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred CCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 1 100 00 1 247899999999999999988865432 333344445543
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.2e-10 Score=91.15 Aligned_cols=100 Identities=22% Similarity=0.349 Sum_probs=73.8
Q ss_pred eEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc---------------EEEcCCCCCCCCCCceeeEEcc--cchhh
Q 028410 99 KVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL---------------VSRADPHNLPFFDEAFDVAFTA--HLAEA 160 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~---------------~~~~d~~~~~~~~~~fD~i~~~--~~~~~ 160 (209)
+|||+|||||..+..++.. +..+|+|+|+|+.+++ ++++|.... . .++||+|++| ++...
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~-~-~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP-L-RGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-c-CCceeEEEeCCCCCCCc
Confidence 8999999999999999984 5579999999998553 223332221 1 3489999998 33222
Q ss_pred ---h-------CH--------------HHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccc
Q 028410 161 ---L-------FP--------------SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSS 203 (209)
Q Consensus 161 ---~-------~~--------------~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~ 203 (209)
. +| ..++.++.+.|+|||.+++-.+ ..+...+.++|.+.+
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g---~~q~~~v~~~~~~~~ 254 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG---LTQGEAVKALFEDTG 254 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC---CCcHHHHHHHHHhcC
Confidence 0 12 5677889999999998766655 456888888888888
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.6e-10 Score=85.29 Aligned_cols=55 Identities=25% Similarity=0.172 Sum_probs=49.7
Q ss_pred CcEEEcCCCCCCCCCCceeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 132 PLVSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 132 ~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
++++++|+.++|+++++||+|++..+.+++ ++..++++++|+|||||.+++....
T Consensus 28 i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 28 IEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred eEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 568999999999999999999998888877 9999999999999999999877544
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=8e-10 Score=91.44 Aligned_cols=92 Identities=21% Similarity=0.283 Sum_probs=68.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc--------------------EEEcCCCC-CCCCCCceeeE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL--------------------VSRADPHN-LPFFDEAFDVA 152 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~--------------------~~~~d~~~-~~~~~~~fD~i 152 (209)
.++.+||++|||+|..+.++.+. +..+|+++|+++.+++ ++.+|+.+ +...+++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 56789999999999999999885 5679999999988543 34455443 22246789999
Q ss_pred Ecccchh-----hhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 153 FTAHLAE-----ALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 153 ~~~~~~~-----~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
++..... ++...++++.+.+.|+|||.+++....
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 9853221 223478899999999999997765443
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-09 Score=91.10 Aligned_cols=88 Identities=19% Similarity=0.164 Sum_probs=66.5
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.++++.+|||+|||+|..+..+++. + .+.|+++|+++.++ .++.+|..+.+...++||+|++.
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~ 156 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVT 156 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEEC
Confidence 4578899999999999999999984 3 24799999998743 36678876655555789999985
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEEe
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
..... ....+.+.|+|||++++...
T Consensus 157 ~g~~~-----ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 157 VGVDE-----VPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred CchHH-----hHHHHHHhcCCCCEEEEEeC
Confidence 33221 23456789999999887654
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.4e-10 Score=89.85 Aligned_cols=109 Identities=23% Similarity=0.264 Sum_probs=82.3
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHh-c-CCceEEEecCCCC----------------CCcEEEcCCCCCCCC---CCcee
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNS-I-GVADVTGVELMDS----------------LPLVSRADPHNLPFF---DEAFD 150 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~-~-~~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~---~~~fD 150 (209)
..+.+|.+|+|.|.|+|.++..++. . +.++|+..|+.++ .+.+...|+.+..|+ ++.+|
T Consensus 36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~D 115 (247)
T PF08704_consen 36 LDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFD 115 (247)
T ss_dssp TT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEE
T ss_pred cCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCccc
Confidence 3779999999999999999999998 3 6789999999887 234778888764443 36899
Q ss_pred eEEcccchhhhCHHHHHHHHHHhc-ccCcEEEEEEecCCcccHHHHHHHhccccccc
Q 028410 151 VAFTAHLAEALFPSRFVGEMERTV-KIGGVCMVLMEECAGREIKQIVELFRTSSFTE 206 (209)
Q Consensus 151 ~i~~~~~~~~~~~~~~l~~~~r~L-kpgG~lil~~~~~~~~~~~~~~~l~~~~~~~~ 206 (209)
.|+. ++ -+|..++..+.++| ||||+ +++..+.-+|...+.+.++.++|..
T Consensus 116 avfL-Dl---p~Pw~~i~~~~~~L~~~gG~--i~~fsP~ieQv~~~~~~L~~~gf~~ 166 (247)
T PF08704_consen 116 AVFL-DL---PDPWEAIPHAKRALKKPGGR--ICCFSPCIEQVQKTVEALREHGFTD 166 (247)
T ss_dssp EEEE-ES---SSGGGGHHHHHHHE-EEEEE--EEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred EEEE-eC---CCHHHHHHHHHHHHhcCCce--EEEECCCHHHHHHHHHHHHHCCCee
Confidence 9987 22 25889999999999 89999 5566666889999999999998854
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.4e-09 Score=83.79 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=68.7
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC---------------CCcEEEcCCCCCCCCCCceeeEEccc
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
..++++.+|||||||+|+.+.-|++.. ++|+++|..+. .+.+.++|...-=-+...||.|+...
T Consensus 68 L~~~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vta 146 (209)
T COG2518 68 LELKPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTA 146 (209)
T ss_pred hCCCCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEee
Confidence 377999999999999999999999973 49999999887 24477888766322458999998853
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
....+ | ..+.+.||+||++++.+..
T Consensus 147 aa~~v-P----~~Ll~QL~~gGrlv~PvG~ 171 (209)
T COG2518 147 AAPEV-P----EALLDQLKPGGRLVIPVGS 171 (209)
T ss_pred ccCCC-C----HHHHHhcccCCEEEEEEcc
Confidence 32222 2 3466789999999999883
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.5e-10 Score=90.63 Aligned_cols=92 Identities=17% Similarity=0.209 Sum_probs=68.5
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc----------------EEEcCCCCC-CCCCCceeeEEccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL----------------VSRADPHNL-PFFDEAFDVAFTAH 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~----------------~~~~d~~~~-~~~~~~fD~i~~~~ 156 (209)
.++.+|||+|||+|..+..+++ .+..+++++|+++++++ ++.+|+.+. +-..++||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 5678999999999999999987 46679999999988443 455665432 22246899999853
Q ss_pred chh-----hhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 157 LAE-----ALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 157 ~~~-----~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
... ++...++++++.+.|+|||++++....
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 221 123479999999999999998875443
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.4e-10 Score=86.99 Aligned_cols=89 Identities=20% Similarity=0.203 Sum_probs=64.3
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCC---------------CCcEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.++++.+|||||||+|+.+..++.. + .+.|+++|+++. .+.++.+|....--....||.|++.
T Consensus 69 ~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~ 148 (209)
T PF01135_consen 69 DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVT 148 (209)
T ss_dssp TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEES
T ss_pred hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEe
Confidence 5899999999999999999999984 3 468999999987 2347888876543346789999986
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
...... | ..+.+.||+||++++.+..
T Consensus 149 ~a~~~i-p----~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 149 AAVPEI-P----EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp SBBSS-------HHHHHTEEEEEEEEEEESS
T ss_pred eccchH-H----HHHHHhcCCCcEEEEEEcc
Confidence 433322 2 4577789999999988875
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-09 Score=93.61 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=64.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCC---CCCCcEE----------EcCCCCCCCCCCceeeEEcccc--hh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELM---DSLPLVS----------RADPHNLPFFDEAFDVAFTAHL--AE 159 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s---~~~~~~~----------~~d~~~~~~~~~~fD~i~~~~~--~~ 159 (209)
..-..+||+|||+|.++.+|.+.+. .+..+-++ +..++|. ..-..++||++++||+|.|+.. ..
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W 194 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPW 194 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccc
Confidence 3446899999999999999999755 33333222 2222221 2224679999999999999753 33
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEecCC
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEECA 188 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~~~ 188 (209)
+.+..-++-|+.|+|||||++++.....+
T Consensus 195 ~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 195 HPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred hhcccceeehhhhhhccCceEEecCCccc
Confidence 33445688999999999999877765443
|
; GO: 0008168 methyltransferase activity |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.6e-09 Score=93.76 Aligned_cols=107 Identities=15% Similarity=0.205 Sum_probs=76.3
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC---------------cEEEcCCCCCC--CCCCceeeEEc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP---------------LVSRADPHNLP--FFDEAFDVAFT 154 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~---------------~~~~~d~~~~~--~~~~~fD~i~~ 154 (209)
..++.+|||+|||+|..+..+++. +.++|+++|+++.++ .++++|+.+++ ++ ++||+|++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~ 326 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILV 326 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence 467889999999999999999883 457999999998743 47788887753 33 78999997
Q ss_pred cc------chhh---------------h--CHHHHHHHHHHhcccCcEEEEEEecCCcccHH-HHHHHhcc
Q 028410 155 AH------LAEA---------------L--FPSRFVGEMERTVKIGGVCMVLMEECAGREIK-QIVELFRT 201 (209)
Q Consensus 155 ~~------~~~~---------------~--~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~-~~~~l~~~ 201 (209)
.. +..+ + ...+++.++.+.|||||.++.++.+....+.. .+..++++
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~ 397 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEE 397 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHh
Confidence 41 1000 0 12468999999999999998877665433333 33444444
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-09 Score=89.79 Aligned_cols=92 Identities=21% Similarity=0.238 Sum_probs=73.3
Q ss_pred hcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC---------------CCcEEEcCCCCCCCCCCceeeEEc
Q 028410 90 GKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFT 154 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~i~~ 154 (209)
....+-.+..|||+|||+|.++...|+.|..+|+++|.|.. .++++++.++++.+|.++.|+|++
T Consensus 54 ~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvS 133 (346)
T KOG1499|consen 54 QNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVS 133 (346)
T ss_pred cchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEee
Confidence 33445778999999999999999999999899999999876 345889999998887899999999
Q ss_pred ccchhhhCHHH----HHHHHHHhcccCcEEE
Q 028410 155 AHLAEALFPSR----FVGEMERTVKIGGVCM 181 (209)
Q Consensus 155 ~~~~~~~~~~~----~l~~~~r~LkpgG~li 181 (209)
-++...+..+. .+-.=-+.|+|||.++
T Consensus 134 EWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 134 EWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 77666553333 3334458999999753
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.1e-09 Score=84.13 Aligned_cols=93 Identities=16% Similarity=0.173 Sum_probs=59.9
Q ss_pred CCCCeEEEEcCCCChhHHHHH----h---c--C-CceEEEecCCCCCC--------------------------------
Q 028410 95 FNHSKVLCVSAGAGHEVMAFN----S---I--G-VADVTGVELMDSLP-------------------------------- 132 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la----~---~--~-~~~v~~vD~s~~~~-------------------------------- 132 (209)
.+..+|+..||++|.-...+| + . + .-+|+|+|+|+.++
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 467999999999996555543 2 1 1 23899999999833
Q ss_pred -----------cEEEcCCCCCCCCCCceeeEEcccchhhhCH---HHHHHHHHHhcccCcEEEEEEecC
Q 028410 133 -----------LVSRADPHNLPFFDEAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 133 -----------~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~---~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
.|.+.|..+.+.+.+.||+|+|.+|+.++++ .++++.+++.|+|||++++...+.
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE~ 178 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSES 178 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT--
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCcc
Confidence 2677777774445789999999999888854 789999999999999988776654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.8e-09 Score=95.19 Aligned_cols=110 Identities=21% Similarity=0.247 Sum_probs=77.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCC-ceEEEecCCCCCCc----------------------EEEcCCCC-CCCCCCcee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGV-ADVTGVELMDSLPL----------------------VSRADPHN-LPFFDEAFD 150 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~-~~v~~vD~s~~~~~----------------------~~~~d~~~-~~~~~~~fD 150 (209)
+++.+|||+|||+|..+.++.+.+. .+++++|+++++++ ++.+|..+ +...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 5678999999999999999988643 69999999887554 23334333 112347899
Q ss_pred eEEcccchh------hhCHHHHHHHHHHhcccCcEEEEEEecC--CcccHHHHHHHhccccc
Q 028410 151 VAFTAHLAE------ALFPSRFVGEMERTVKIGGVCMVLMEEC--AGREIKQIVELFRTSSF 204 (209)
Q Consensus 151 ~i~~~~~~~------~~~~~~~l~~~~r~LkpgG~lil~~~~~--~~~~~~~~~~l~~~~~~ 204 (209)
+|+++.... ++...++++.+.+.|||||.+++....+ ....+..+.+.+++.+|
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 999963221 2244679999999999999987765432 23344556666666666
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.9e-09 Score=81.52 Aligned_cols=89 Identities=17% Similarity=0.067 Sum_probs=65.3
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-------------CcEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------PLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~-------------~~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
...++.+|||+|||+|..+..+++.+ .+++++|+++.+ ++++.+|+.++++++.+||.|+++- ..
T Consensus 10 ~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~-Py 87 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNL-PY 87 (169)
T ss_pred CCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECC-Cc
Confidence 45778899999999999999999984 599999999863 3478899999888777899999853 22
Q ss_pred hhCHHHHHHHHHHh--cccCcEEEEEE
Q 028410 160 ALFPSRFVGEMERT--VKIGGVCMVLM 184 (209)
Q Consensus 160 ~~~~~~~l~~~~r~--LkpgG~lil~~ 184 (209)
+. ....+..+.+. +.++|.+++-.
T Consensus 88 ~~-~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 88 NI-STPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred cc-HHHHHHHHHhcCCCcceEEEEEEH
Confidence 22 23444444433 34677765543
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.5e-09 Score=96.40 Aligned_cols=107 Identities=16% Similarity=0.108 Sum_probs=75.5
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-----------------EEEcCCCCC-CCCCCceeeEEccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-----------------VSRADPHNL-PFFDEAFDVAFTAH 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-----------------~~~~d~~~~-~~~~~~fD~i~~~~ 156 (209)
.++.+|||+|||+|.++..++..|..+|+++|+|+.+++ ++++|+.+. .-..++||+|+++-
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 467899999999999999999877668999999998443 566676542 11156899999961
Q ss_pred -----------chhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 157 -----------LAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 157 -----------~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+.... +..+++..+.++|+|||.++++..... +....+.+...|+
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~---~~~~~~~~~~~g~ 673 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG---FKMDEEGLAKLGL 673 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc---CChhHHHHHhCCC
Confidence 11112 346788889999999999877655432 2223555555544
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.4e-09 Score=88.12 Aligned_cols=92 Identities=15% Similarity=0.198 Sum_probs=65.4
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-------------------------EEEcCCCCCC----CCC
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-------------------------VSRADPHNLP----FFD 146 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-------------------------~~~~d~~~~~----~~~ 146 (209)
++.+|||+|||-|....-....+...++|+|+++..++ ++.+|..... +++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 88999999999888777776666789999999987332 5677766421 333
Q ss_pred --CceeeEEcccchhhh-C----HHHHHHHHHHhcccCcEEEEEEecC
Q 028410 147 --EAFDVAFTAHLAEAL-F----PSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 147 --~~fD~i~~~~~~~~~-~----~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
..||+|-|-..+|+. . ...++.++.+.|||||+++..+...
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 599999986555544 2 3669999999999999999888763
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1e-08 Score=88.47 Aligned_cols=104 Identities=15% Similarity=0.073 Sum_probs=71.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC-----------------cEEEcCCCCCC--C--CCCceeeEE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-----------------LVSRADPHNLP--F--FDEAFDVAF 153 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~-----------------~~~~~d~~~~~--~--~~~~fD~i~ 153 (209)
.++.+|||+|||+|.++...+..+..+|+++|+|+.++ .++++|+.+.- + ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 56889999999999999876665666999999998844 25667765531 1 246899999
Q ss_pred cccc---------hhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHh
Q 028410 154 TAHL---------AEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELF 199 (209)
Q Consensus 154 ~~~~---------~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~ 199 (209)
++-- .... ...+++....++|+|||.++.+..+. ..+...+.+..
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~-~~~~~~f~~~v 353 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG-LMTSDLFQKII 353 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC-cCCHHHHHHHH
Confidence 9621 1111 23556677889999999987665442 33444444433
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.1e-09 Score=81.82 Aligned_cols=88 Identities=16% Similarity=0.174 Sum_probs=68.1
Q ss_pred eEEEEcCCCChhHHHHHh-cCC--ceEEEecCCCCCCcEE--------------EcCCCC----CCCCCCceeeEEcccc
Q 028410 99 KVLCVSAGAGHEVMAFNS-IGV--ADVTGVELMDSLPLVS--------------RADPHN----LPFFDEAFDVAFTAHL 157 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~la~-~~~--~~v~~vD~s~~~~~~~--------------~~d~~~----~~~~~~~fD~i~~~~~ 157 (209)
+||++|||.|.....+.+ .+. -.+.+.|.|+.+++.+ +.|+.. -+.+.+++|+|++-.+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 899999999999988877 332 5899999999977521 223322 3456799999999887
Q ss_pred hhhhCH---HHHHHHHHHhcccCcEEEEEEec
Q 028410 158 AEALFP---SRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 158 ~~~~~~---~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+..+.| ..++.++.++|||||.+++--+.
T Consensus 154 LSAi~pek~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCCCcEEEEeecc
Confidence 777744 77889999999999997776544
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.4e-09 Score=88.91 Aligned_cols=92 Identities=17% Similarity=0.229 Sum_probs=66.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCcE----------------------EEcCCCC-CCCCCCcee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPLV----------------------SRADPHN-LPFFDEAFD 150 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~~----------------------~~~d~~~-~~~~~~~fD 150 (209)
.++.+||++|||+|..+..+.+. +..+|+++|++++++++ +.+|+.+ +.-.+++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 55679999999999999988885 45799999999996653 2233322 122356899
Q ss_pred eEEcccch------hhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 151 VAFTAHLA------EALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 151 ~i~~~~~~------~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+|++.... ..+...++++.+.+.|+|||.++.....
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~s 270 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNS 270 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 99986211 1124478999999999999997665443
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.2e-09 Score=80.89 Aligned_cols=104 Identities=17% Similarity=0.266 Sum_probs=74.9
Q ss_pred CCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCC---------------CcEEEcCCCC-CC--CCCCceeeEEccc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSL---------------PLVSRADPHN-LP--FFDEAFDVAFTAH 156 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~---------------~~~~~~d~~~-~~--~~~~~fD~i~~~~ 156 (209)
+...+||||||.|.+...+|. .+...++|+|++... +.++.+|+.. +. ++++++|-|+.+.
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 344999999999999999998 577799999999873 3478888887 22 4678999998852
Q ss_pred ch---------hhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcc
Q 028410 157 LA---------EALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT 201 (209)
Q Consensus 157 ~~---------~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~ 201 (209)
-. .-+-...++..+.++|+|||.+.+.+.. ..-.....+.|..
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~--~~y~~~~~~~~~~ 148 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV--EEYAEWMLEQFEE 148 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES---HHHHHHHHHHHHH
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHh
Confidence 11 1113488999999999999997777665 4445556666665
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.5e-08 Score=77.93 Aligned_cols=89 Identities=19% Similarity=0.272 Sum_probs=66.7
Q ss_pred CCCC-eEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc----------------EEEcCCCCCCC--------CCCc
Q 028410 95 FNHS-KVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL----------------VSRADPHNLPF--------FDEA 148 (209)
Q Consensus 95 ~~~~-~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~----------------~~~~d~~~~~~--------~~~~ 148 (209)
.+.. +|||||||||..+.++++ .+.-+..-.|+++.... -+..|+...+. ..++
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCC
Confidence 4444 599999999999999998 57667777787776321 23445554322 2469
Q ss_pred eeeEEcccchhhh---CHHHHHHHHHHhcccCcEEEEE
Q 028410 149 FDVAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 149 fD~i~~~~~~~~~---~~~~~l~~~~r~LkpgG~lil~ 183 (209)
||.|+|.++.|.. ....+++...++|+|||.+++.
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 9999999888766 3488999999999999996655
|
The function of this family is unknown. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-08 Score=80.69 Aligned_cols=86 Identities=16% Similarity=0.189 Sum_probs=65.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-c-CCceEEEecCCCCCC----------------cEEEcCCCCC-C-----CCCCcee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-I-GVADVTGVELMDSLP----------------LVSRADPHNL-P-----FFDEAFD 150 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~-~~~~v~~vD~s~~~~----------------~~~~~d~~~~-~-----~~~~~fD 150 (209)
.++.+|||+|||+|+.+..++. . +.++++++|+++++. +++.+|+.+. + .++++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 6788999999999999998887 3 457999999999733 3667777652 1 1246899
Q ss_pred eEEcccchhhhCHHHHHHHHHHhcccCcEEEE
Q 028410 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (209)
Q Consensus 151 ~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil 182 (209)
+|+...-- -.....+.++.+.|||||.+++
T Consensus 147 ~VfiDa~k--~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 147 FAFVDADK--PNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred EEEECCCH--HHHHHHHHHHHHhcCCCeEEEE
Confidence 99984321 1245778999999999998665
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-08 Score=83.38 Aligned_cols=91 Identities=20% Similarity=0.267 Sum_probs=64.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcC-CceEEEecCCCCCCc-------------------EEEcCCCC-CCCCCCceeeEE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIG-VADVTGVELMDSLPL-------------------VSRADPHN-LPFFDEAFDVAF 153 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~-~~~v~~vD~s~~~~~-------------------~~~~d~~~-~~~~~~~fD~i~ 153 (209)
.++.+||++|||+|..+..+.+.+ ..+++++|+++++++ ++.+|..+ +.-.+++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 445699999999999999888753 568999999988553 22223221 111246899999
Q ss_pred cccchh-----hhCHHHHHHHHHHhcccCcEEEEEEe
Q 028410 154 TAHLAE-----ALFPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 154 ~~~~~~-----~~~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+..... .+...++++.+.+.|+|||.+++...
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 864311 12257889999999999999877643
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.9e-09 Score=81.39 Aligned_cols=90 Identities=20% Similarity=0.324 Sum_probs=65.0
Q ss_pred CCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc-------------EE------------------------
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL-------------VS------------------------ 135 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~-------------~~------------------------ 135 (209)
...+..+|||||-+|..+..+++ .+...+.|+||++..+. ..
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 36688999999999999999999 57779999999987332 00
Q ss_pred --EcCCCC----------------CCCCCCceeeEEcc------cchhhh-CHHHHHHHHHHhcccCcEEEEE
Q 028410 136 --RADPHN----------------LPFFDEAFDVAFTA------HLAEAL-FPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 136 --~~d~~~----------------~~~~~~~fD~i~~~------~~~~~~-~~~~~l~~~~r~LkpgG~lil~ 183 (209)
..|+.+ +.+....||+|+|- |+.++- -..++++.+.+.|.|||++++-
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 000000 11345789999995 333333 3589999999999999996553
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.7e-08 Score=95.77 Aligned_cols=106 Identities=21% Similarity=0.202 Sum_probs=76.0
Q ss_pred CCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC-------------------------------cEEEcCCCCCCC
Q 028410 97 HSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP-------------------------------LVSRADPHNLPF 144 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~-------------------------------~~~~~d~~~~~~ 144 (209)
+.+|||+|||+|..+..+++ .+..+|+|+|+|+.++ .++++|+.+..-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999988 4556999999999743 345566554321
Q ss_pred C-CCceeeEEcc--cc------------hh--------------hhC-----------HHHHHHHHHHhcccCcEEEEEE
Q 028410 145 F-DEAFDVAFTA--HL------------AE--------------ALF-----------PSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 145 ~-~~~fD~i~~~--~~------------~~--------------~~~-----------~~~~l~~~~r~LkpgG~lil~~ 184 (209)
. ..+||+|+++ ++ .. .++ ..+++.+..++|||||.+++-+
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 1369999997 11 10 001 1667888899999999877666
Q ss_pred ecCCcccHHHHH-HHhcccccc
Q 028410 185 EECAGREIKQIV-ELFRTSSFT 205 (209)
Q Consensus 185 ~~~~~~~~~~~~-~l~~~~~~~ 205 (209)
+ ..+-+.+. ++|.+.+|.
T Consensus 279 G---~~q~~~v~~~l~~~~gf~ 297 (1082)
T PLN02672 279 G---GRPGQAVCERLFERRGFR 297 (1082)
T ss_pred C---ccHHHHHHHHHHHHCCCC
Confidence 5 45667777 588887763
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.79 E-value=3e-08 Score=76.91 Aligned_cols=119 Identities=21% Similarity=0.245 Sum_probs=86.7
Q ss_pred HHHHHHHHhcccCCCCC-eEEEEcCCCChhHHHHHh-cCCceEEEecCCCC---------------CCcEEEcCCCCCCC
Q 028410 82 AHFFKHLQGKSLLFNHS-KVLCVSAGAGHEVMAFNS-IGVADVTGVELMDS---------------LPLVSRADPHNLPF 144 (209)
Q Consensus 82 ~~~~~~l~~~~~~~~~~-~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~---------------~~~~~~~d~~~~~~ 144 (209)
.++++.+.-...+.... +++|+|+|.|.-+..++- .|..+++.+|.+.+ .+.++.+.+++ +.
T Consensus 33 ~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~ 111 (184)
T PF02527_consen 33 RHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PE 111 (184)
T ss_dssp HHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TT
T ss_pred HHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cc
Confidence 34555555555555555 899999999999999987 57779999999887 23477777777 55
Q ss_pred CCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 145 FDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 145 ~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
...+||+|++..+.. ...++.-+.+.+++||.+++.-+....++..+..+.+...+.
T Consensus 112 ~~~~fd~v~aRAv~~---l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~ 168 (184)
T PF02527_consen 112 YRESFDVVTARAVAP---LDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGL 168 (184)
T ss_dssp TTT-EEEEEEESSSS---HHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCE
T ss_pred cCCCccEEEeehhcC---HHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCC
Confidence 678999999987765 778888889999999998777665555666666666666554
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.3e-09 Score=82.14 Aligned_cols=83 Identities=20% Similarity=0.252 Sum_probs=62.2
Q ss_pred CCCeEEEEcCCCChhHHHHHhc----CCceEEEecCCCCCC----------cEEEcCCCCCCCCCCceeeEEccc--c--
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSI----GVADVTGVELMDSLP----------LVSRADPHNLPFFDEAFDVAFTAH--L-- 157 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~----~~~~v~~vD~s~~~~----------~~~~~d~~~~~~~~~~fD~i~~~~--~-- 157 (209)
.+.+|||+|||+|.++..+++. +..+|+++|+++.++ .++.+|+...++ +++||+|+++- .
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKI 127 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCc
Confidence 3679999999999999998863 345899999999844 378888877665 57999999971 1
Q ss_pred ---h---hh---hCHHHHHHHHHHhcccCcE
Q 028410 158 ---A---EA---LFPSRFVGEMERTVKIGGV 179 (209)
Q Consensus 158 ---~---~~---~~~~~~l~~~~r~LkpgG~ 179 (209)
. .+ .....++....+++++|+.
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 0 01 1246688888887777664
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.8e-08 Score=84.26 Aligned_cols=90 Identities=20% Similarity=0.259 Sum_probs=66.5
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc-------------------EEEcCCCCC--CCCCCceeeE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL-------------------VSRADPHNL--PFFDEAFDVA 152 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~-------------------~~~~d~~~~--~~~~~~fD~i 152 (209)
.++.+||++|||.|..+.++++. +..+|+.+|+++.+++ ++.+|.... ..++++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 66889999999999999999986 3568999999987443 445554331 1235689999
Q ss_pred Ecccch-----hhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 153 FTAHLA-----EALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 153 ~~~~~~-----~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
++.... ..+...++++.+.+.|+|||.++...
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 985322 12235789999999999999976543
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.1e-09 Score=82.03 Aligned_cols=91 Identities=11% Similarity=0.047 Sum_probs=79.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-------------EEEcCCCCCCCCCCceeeEEcccchhhh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-------------VSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-------------~~~~d~~~~~~~~~~fD~i~~~~~~~~~ 161 (209)
+....++|+|||-|.....+...+..+++-+|.|-.|++ ..++|-+.++|.++++|+|+++-..|+.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 566789999999999999999877889999999988664 5678888899999999999998777777
Q ss_pred -CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 162 -FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 162 -~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+.+..+.+++..|||+|.++-..-
T Consensus 151 NdLPg~m~~ck~~lKPDg~Fiasml 175 (325)
T KOG2940|consen 151 NDLPGSMIQCKLALKPDGLFIASML 175 (325)
T ss_pred ccCchHHHHHHHhcCCCccchhHHh
Confidence 889999999999999999766543
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.6e-08 Score=82.29 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=68.6
Q ss_pred CCCeEEEEcCCCChhHHHHHh----c-C----CceEEEecCCCCCCc---------------------------------
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS----I-G----VADVTGVELMDSLPL--------------------------------- 133 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~----~-~----~~~v~~vD~s~~~~~--------------------------------- 133 (209)
...+|+..||+||.-...+|- . + .-+|+|+|+|+.+++
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 358999999999965554432 1 1 237999999987332
Q ss_pred -------------EEEcCCCCCCCC-CCceeeEEcccchhhhC---HHHHHHHHHHhcccCcEEEEEEecC
Q 028410 134 -------------VSRADPHNLPFF-DEAFDVAFTAHLAEALF---PSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 134 -------------~~~~d~~~~~~~-~~~fD~i~~~~~~~~~~---~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
|.+.|+.+.+++ .+.||+|+|.++..+++ ..++++.+.+.|+|||++++-..+.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sEs 265 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSEN 265 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCccc
Confidence 445555554443 58899999999888873 4889999999999999987776654
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.1e-08 Score=78.84 Aligned_cols=92 Identities=15% Similarity=0.216 Sum_probs=69.8
Q ss_pred CCCeEEEEcCCCChhHHHHH----hc-C-----CceEEEecCCCCCCc--------------------------------
Q 028410 96 NHSKVLCVSAGAGHEVMAFN----SI-G-----VADVTGVELMDSLPL-------------------------------- 133 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la----~~-~-----~~~v~~vD~s~~~~~-------------------------------- 133 (209)
...+|+-.||+||.-...+| +. + .-+|+|+|++...++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 58899999999995544443 32 2 248999999987332
Q ss_pred ------------EEEcCCCCCCCCCCceeeEEcccchhhhC---HHHHHHHHHHhcccCcEEEEEEecC
Q 028410 134 ------------VSRADPHNLPFFDEAFDVAFTAHLAEALF---PSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 134 ------------~~~~d~~~~~~~~~~fD~i~~~~~~~~~~---~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
|.+.|....++..+.||+|+|.+|..++| ..+++..++..|+|||++++-..+.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~ 244 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSET 244 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCcc
Confidence 45555555443567899999999988884 3889999999999999988877664
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.6e-08 Score=81.00 Aligned_cols=83 Identities=19% Similarity=0.217 Sum_probs=60.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-----------EEEcCCCCCCCCC-----CceeeEEcccch
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-----------VSRADPHNLPFFD-----EAFDVAFTAHLA 158 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-----------~~~~d~~~~~~~~-----~~fD~i~~~~~~ 158 (209)
.++.++||+|||+|.++..+++.|..+|+|+|+++.++. +...|+......+ ..+|++|.+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS--- 150 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFIS--- 150 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEee---
Confidence 467899999999999999999988789999999996553 2333444332111 356666553
Q ss_pred hhhCHHHHHHHHHHhcccCcEEEEEEe
Q 028410 159 EALFPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 159 ~~~~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
....+..+.+.|+| |.+++.+.
T Consensus 151 ----~~~~l~~i~~~l~~-~~~~~L~K 172 (228)
T TIGR00478 151 ----LISILPELDLLLNP-NDLTLLFK 172 (228)
T ss_pred ----hHhHHHHHHHHhCc-CeEEEEcC
Confidence 22357889999999 88777763
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.4e-08 Score=82.66 Aligned_cols=102 Identities=20% Similarity=0.255 Sum_probs=82.2
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------------EEEc-CCCCCCCCC
Q 028410 83 HFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------VSRA-DPHNLPFFD 146 (209)
Q Consensus 83 ~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------------~~~~-d~~~~~~~~ 146 (209)
.+.+.++.+...++|..|||=-||||.+..+..-.|. .++|.|++..|+. +... |+.++|+++
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~ 262 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRD 262 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCC
Confidence 3444556667889999999999999999999888886 9999999998764 3445 999999999
Q ss_pred CceeeEEccc-----c---hhhh--CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 147 EAFDVAFTAH-----L---AEAL--FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 147 ~~fD~i~~~~-----~---~~~~--~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
++||.|.+.. . ...+ -..++++.+.++||+||++++...
T Consensus 263 ~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 263 NSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9999999951 1 0111 147889999999999999877776
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.4e-08 Score=74.84 Aligned_cols=107 Identities=19% Similarity=0.241 Sum_probs=68.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc------------------EEEcCCCCCC----CCCCce
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL------------------VSRADPHNLP----FFDEAF 149 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~------------------~~~~d~~~~~----~~~~~f 149 (209)
...++.+|||+|||+|..+..++.. +..+|+..|.++ .++ +...|..+.. ....+|
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 4477899999999999999999997 667999999887 332 2333332211 234689
Q ss_pred eeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcc
Q 028410 150 DVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT 201 (209)
Q Consensus 150 D~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~ 201 (209)
|+|+++.+.+.- ....++.-+.+.++|+|.+++..... ......|.+.+++
T Consensus 121 D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R-~~~~~~F~~~~~k 172 (173)
T PF10294_consen 121 DVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR-RKSEQEFFDRLKK 172 (173)
T ss_dssp SEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S--TGGCHHHHHH--
T ss_pred CEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe-cHHHHHHHHHhhh
Confidence 999999876655 66888999999999999966665543 4445556665543
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.6e-08 Score=78.30 Aligned_cols=125 Identities=17% Similarity=0.177 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcc--cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------------EEEcCCCCC
Q 028410 80 SYAHFFKHLQGKS--LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------VSRADPHNL 142 (209)
Q Consensus 80 ~~~~~~~~l~~~~--~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------------~~~~d~~~~ 142 (209)
....++..+.... ......++||.|||-|+.+..+...-+.+|..+|+.+..++ +.+...+++
T Consensus 37 gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f 116 (218)
T PF05891_consen 37 GSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDF 116 (218)
T ss_dssp HHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-
T ss_pred HHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhc
Confidence 3444555443221 12357899999999999998775522579999999887443 444555555
Q ss_pred CCCCCceeeEEcccchhhh---CHHHHHHHHHHhcccCcEEEEEEecCCc-------------ccHHHHHHHhccccc
Q 028410 143 PFFDEAFDVAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEECAG-------------REIKQIVELFRTSSF 204 (209)
Q Consensus 143 ~~~~~~fD~i~~~~~~~~~---~~~~~l~~~~r~LkpgG~lil~~~~~~~-------------~~~~~~~~l~~~~~~ 204 (209)
..+.++||+|++-++..|+ +..++|+.+...|+|||.+++=.+.... -....+.++|+++|+
T Consensus 117 ~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl 194 (218)
T PF05891_consen 117 TPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGL 194 (218)
T ss_dssp ---TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-
T ss_pred cCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCC
Confidence 4446799999999999888 4588999999999999997765443321 156778999999987
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-07 Score=74.46 Aligned_cols=109 Identities=19% Similarity=0.235 Sum_probs=85.2
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcEEEcCCCCCCCC---CCceeeEEcccchhhh-CH---HHHHH
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADPHNLPFF---DEAFDVAFTAHLAEAL-FP---SRFVG 168 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~~~~d~~~~~~~---~~~fD~i~~~~~~~~~-~~---~~~l~ 168 (209)
...++|||||=+...... ..+.-+|+.||+++....+.+.|+.+.|+| +++||+|.++-|..++ +| -+++.
T Consensus 51 ~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~ 128 (219)
T PF11968_consen 51 PKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLR 128 (219)
T ss_pred ccceEEeecccCCCCccc--ccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHH
Confidence 347999999976554433 334457999999999999999999998764 6899999998666655 44 78999
Q ss_pred HHHHhcccCcE-----EEEEEecC-----CcccHHHHHHHhccccccc
Q 028410 169 EMERTVKIGGV-----CMVLMEEC-----AGREIKQIVELFRTSSFTE 206 (209)
Q Consensus 169 ~~~r~LkpgG~-----lil~~~~~-----~~~~~~~~~~l~~~~~~~~ 206 (209)
.+.+.|+|+|. ++++.+.+ .+.....+.+++..-||.+
T Consensus 129 r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~ 176 (219)
T PF11968_consen 129 RAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTR 176 (219)
T ss_pred HHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEE
Confidence 99999999999 88887653 4456667777777777744
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-07 Score=76.74 Aligned_cols=94 Identities=17% Similarity=0.129 Sum_probs=73.7
Q ss_pred hcccCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCC--------CCCcEEEcCCCCCCCCCCceeeEEcccchhh
Q 028410 90 GKSLLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMD--------SLPLVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~--------~~~~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 160 (209)
....+.+..+|+|||+|+|.++..+++ +|..+++..|.-+ ..++++.+|+. -++|. +|+++..++.|.
T Consensus 94 ~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~ 170 (241)
T PF00891_consen 94 EAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHD 170 (241)
T ss_dssp HHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGG
T ss_pred ccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHH-hhhcc--ccceeeehhhhh
Confidence 334557778999999999999999988 6777999998732 24568899998 66666 999999999887
Q ss_pred hC---HHHHHHHHHHhcccC--cEEEEEEec
Q 028410 161 LF---PSRFVGEMERTVKIG--GVCMVLMEE 186 (209)
Q Consensus 161 ~~---~~~~l~~~~r~Lkpg--G~lil~~~~ 186 (209)
.. -..+|+++++.|+|| |+++|...-
T Consensus 171 ~~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 171 WSDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp S-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred cchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 73 377899999999999 999888655
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-07 Score=73.77 Aligned_cols=129 Identities=14% Similarity=0.106 Sum_probs=84.6
Q ss_pred hccCchhHhhHhHHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCC----CCcEEEcCCC
Q 028410 67 RLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS----LPLVSRADPH 140 (209)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~----~~~~~~~d~~ 140 (209)
.-|+++++++..+.... ...++++..|+|+|+-+|.+++.+++. + .+.|+|+|+.|. .+.++++|++
T Consensus 23 ~gyRSRAa~KL~el~~k-------~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~ 95 (205)
T COG0293 23 EGYRSRAAYKLLELNEK-------FKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDIT 95 (205)
T ss_pred ccccchHHHHHHHHHHh-------cCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeecc
Confidence 34455555544433332 235589999999999999999999984 3 346999999986 3568999998
Q ss_pred CCC--------CCCCceeeEEccc---------chhhh--CH-HHHHHHHHHhcccCcEEEEEEecCC--cccHHHHHHH
Q 028410 141 NLP--------FFDEAFDVAFTAH---------LAEAL--FP-SRFVGEMERTVKIGGVCMVLMEECA--GREIKQIVEL 198 (209)
Q Consensus 141 ~~~--------~~~~~fD~i~~~~---------~~~~~--~~-~~~l~~~~r~LkpgG~lil~~~~~~--~~~~~~~~~l 198 (209)
+-+ +....+|+|+|.. +++.. .. ..++.-...+|+|||.+++-+...+ +...+.+...
T Consensus 96 ~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~ 175 (205)
T COG0293 96 DEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRL 175 (205)
T ss_pred CccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHh
Confidence 854 3456689999841 12211 22 3344555679999999887765543 2234444445
Q ss_pred hccc
Q 028410 199 FRTS 202 (209)
Q Consensus 199 ~~~~ 202 (209)
|+.-
T Consensus 176 F~~v 179 (205)
T COG0293 176 FRKV 179 (205)
T ss_pred hcee
Confidence 5543
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4e-08 Score=80.98 Aligned_cols=94 Identities=18% Similarity=0.293 Sum_probs=73.3
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------------------EEEcCCCC------CCCCC
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------------VSRADPHN------LPFFD 146 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------------------~~~~d~~~------~~~~~ 146 (209)
.+++..++|+|||-|..+.-.-+.|.+.++|+||.+..++ ++.+|... +++++
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 4888999999999998887777767889999999987443 67777653 45566
Q ss_pred CceeeEEcccchhhh-----CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 147 EAFDVAFTAHLAEAL-----FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 147 ~~fD~i~~~~~~~~~-----~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
.+||+|-|-..+|+. ...-++.++.+.|||||+++-.++..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 669999885444433 34778999999999999987777653
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.3e-07 Score=74.12 Aligned_cols=92 Identities=16% Similarity=0.272 Sum_probs=66.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc----------------EE----EcCCCC-CCCCCCceeeE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL----------------VS----RADPHN-LPFFDEAFDVA 152 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~----------------~~----~~d~~~-~~~~~~~fD~i 152 (209)
..+..|||+|||+|..+..++. .+...++++|.|+.++. ++ .+|..+ .+..+++.|++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 4455999999999999999988 57779999999998553 33 233322 34567999999
Q ss_pred Ecc--cchh---------------------hh----CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 153 FTA--HLAE---------------------AL----FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 153 ~~~--~~~~---------------------~~----~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+|+ ++.+ .. ....++.-..|.|+|||.+.+-+.+
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence 997 1110 00 0133556778999999999888774
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.5e-08 Score=84.20 Aligned_cols=90 Identities=16% Similarity=0.170 Sum_probs=65.5
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCC----CCCCCCceeeEE
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHN----LPFFDEAFDVAF 153 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~----~~~~~~~fD~i~ 153 (209)
...++.+|||+|||+|.++..+++.+ .+|+|+|+|+.++ .++.+|+.+ .++.+++||+|+
T Consensus 294 ~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 294 DPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred cCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 34678899999999999999999875 5999999999855 377888754 234567899999
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
++--.. ...+.+..+.+ ++|++.+++.++.
T Consensus 373 ~dPPr~--g~~~~~~~l~~-~~~~~ivyvSCnp 402 (443)
T PRK13168 373 LDPPRA--GAAEVMQALAK-LGPKRIVYVSCNP 402 (443)
T ss_pred ECcCCc--ChHHHHHHHHh-cCCCeEEEEEeCh
Confidence 852111 12344555544 6899987777654
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.7e-08 Score=76.11 Aligned_cols=92 Identities=18% Similarity=0.107 Sum_probs=61.5
Q ss_pred CCCeEEEEcCCCChhHHHHHhcC--CceEEEecCCCC----CCcEEEcCCCCCC--------CC--CCceeeEEcccc--
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIG--VADVTGVELMDS----LPLVSRADPHNLP--------FF--DEAFDVAFTAHL-- 157 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~--~~~v~~vD~s~~----~~~~~~~d~~~~~--------~~--~~~fD~i~~~~~-- 157 (209)
++.++||+||++|.++..+.+.+ .+.|+|+|+.+. .+.++++|+.+.. ++ .+.||+|+|...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~ 102 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMAPN 102 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-----
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcceeccccccC
Confidence 45999999999999999999975 579999999876 3335566654321 11 268999999531
Q ss_pred -h------hhhC---HHHHHHHHHHhcccCcEEEEEEecC
Q 028410 158 -A------EALF---PSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 158 -~------~~~~---~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
. +... ....+.-+.+.|||||.+++-+...
T Consensus 103 ~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 103 VSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp --SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 1 1111 1344455668899999877766554
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.2e-08 Score=75.41 Aligned_cols=92 Identities=16% Similarity=0.061 Sum_probs=62.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCC-CCCCCCceeeEEcccch
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHN-LPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~-~~~~~~~fD~i~~~~~~ 158 (209)
.++.+|||+|||+|.++..++..+..+|+++|.++..+ .++.+|+.+ ++...++||+|+++--.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 45679999999999999875554557999999998743 356667654 22224579999996432
Q ss_pred hhhCHHHHHHHHHH--hcccCcEEEEEEec
Q 028410 159 EALFPSRFVGEMER--TVKIGGVCMVLMEE 186 (209)
Q Consensus 159 ~~~~~~~~l~~~~r--~LkpgG~lil~~~~ 186 (209)
..-....++..+.+ .|+|+|.+++....
T Consensus 132 ~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 132 RKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 21223445555554 37899987777654
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.3e-07 Score=73.52 Aligned_cols=88 Identities=15% Similarity=0.203 Sum_probs=67.4
Q ss_pred CCCCCeEEEEcCCCChhHHHHHh-cC-CceEEEecCCCCCCc----------------EEE-cCCCC-CC-CCCCceeeE
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNS-IG-VADVTGVELMDSLPL----------------VSR-ADPHN-LP-FFDEAFDVA 152 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~-~~-~~~v~~vD~s~~~~~----------------~~~-~d~~~-~~-~~~~~fD~i 152 (209)
+.+..+|||+|.+.|+.+.+++. .+ .++++++|+++++.+ .+. +|..+ +. ...++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 36899999999999999999998 44 679999999998443 444 35443 22 457999999
Q ss_pred EcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
|..+-- .+...++..+.+.|+|||.+++-
T Consensus 137 FIDadK--~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 137 FIDADK--ADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred EEeCCh--hhCHHHHHHHHHHhCCCcEEEEe
Confidence 983211 14578899999999999997654
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.8e-07 Score=77.69 Aligned_cols=109 Identities=21% Similarity=0.236 Sum_probs=79.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC---------------CCcEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
-.+..|||+|||+|.++...++.|..+|++++-|+. .+.++.|.++++.+ .++.|++++-.+..
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL-PEk~DviISEPMG~ 254 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIEL-PEKVDVIISEPMGY 254 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccC-chhccEEEeccchh
Confidence 457899999999999999999988899999998864 23478899999887 46899999964443
Q ss_pred hhCHHHHH---HHHHHhcccCcEEEEEEecC---CcccHHHHHHHhccccc
Q 028410 160 ALFPSRFV---GEMERTVKIGGVCMVLMEEC---AGREIKQIVELFRTSSF 204 (209)
Q Consensus 160 ~~~~~~~l---~~~~r~LkpgG~lil~~~~~---~~~~~~~~~~l~~~~~~ 204 (209)
-+..++++ -..+|.|||.|.++=.++.. .......+.+-|++.+|
T Consensus 255 mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnF 305 (517)
T KOG1500|consen 255 MLVNERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANF 305 (517)
T ss_pred hhhhHHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhh
Confidence 33333333 45679999999976555442 23344556666666554
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-07 Score=78.74 Aligned_cols=88 Identities=10% Similarity=0.072 Sum_probs=60.4
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCCCC-CCCceeeEEcccchh
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNLPF-FDEAFDVAFTAHLAE 159 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~-~~~~fD~i~~~~~~~ 159 (209)
++.+|||+|||+|.++..+++.+ .+|+|+|+++.++ +++++|+.++.. .+++||+|+++---.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 46899999999999999999976 5999999999844 377888776432 345799999852111
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
-+ ... +.++...++|++.+++.+..
T Consensus 252 G~-~~~-~~~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 252 GI-GKE-LCDYLSQMAPRFILYSSCNA 276 (315)
T ss_pred Cc-cHH-HHHHHHHcCCCeEEEEECCc
Confidence 01 122 22334446787765555443
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.4e-07 Score=74.09 Aligned_cols=88 Identities=15% Similarity=0.177 Sum_probs=65.8
Q ss_pred CCCCCeEEEEcCCCChhHHHHHh-c-CCceEEEecCCCCCC----------------cEEEcCCCC-CC-C----CCCce
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNS-I-GVADVTGVELMDSLP----------------LVSRADPHN-LP-F----FDEAF 149 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~-~-~~~~v~~vD~s~~~~----------------~~~~~d~~~-~~-~----~~~~f 149 (209)
..+..+|||+|+|+|+.+.+++. . +.++++++|.+++.. +++.+|+.+ ++ + .+++|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 36789999999999999999998 3 356899999999733 366777655 21 1 24689
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
|+||...-- -+....+..+.+.|+|||.+++-
T Consensus 196 D~VFIDa~K--~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 196 DFAFVDADK--RMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CEEEECCCH--HHHHHHHHHHHHhcCCCcEEEEe
Confidence 999984321 13577788889999999996653
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.7e-07 Score=72.81 Aligned_cols=87 Identities=16% Similarity=0.151 Sum_probs=64.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cC-CceEEEecCCCCC----------------CcEEEcCCCCC-C-----CCCCcee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IG-VADVTGVELMDSL----------------PLVSRADPHNL-P-----FFDEAFD 150 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~-~~~v~~vD~s~~~----------------~~~~~~d~~~~-~-----~~~~~fD 150 (209)
.+..+||||||++|+.+.++++ .+ .++|+++|++++. ++++.+|+.+. + .+.++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 5788999999999999999998 43 4799999999873 33677776541 1 1246899
Q ss_pred eEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 151 ~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
+||...-- -+....+..+.+.|+|||.+++-
T Consensus 124 ~VFiDa~K--~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 124 FVFIDADK--RNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EEEEESTG--GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcccc--cchhhHHHHHhhhccCCeEEEEc
Confidence 99985421 14566778888999999986554
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2e-07 Score=72.53 Aligned_cols=101 Identities=20% Similarity=0.234 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHh-cC--CceEEEecCCCCCC-----------------------
Q 028410 79 TSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNS-IG--VADVTGVELMDSLP----------------------- 132 (209)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~-~~--~~~v~~vD~s~~~~----------------------- 132 (209)
..++..+..|. ..+.++.++||+|+|||+++.-++. .+ .+..+|||.-++.+
T Consensus 67 ~mha~~le~L~--~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~ 144 (237)
T KOG1661|consen 67 HMHATALEYLD--DHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG 144 (237)
T ss_pred HHHHHHHHHHH--HhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC
Confidence 33445555442 1359999999999999999998886 32 23458888777633
Q ss_pred --cEEEcCCCCCCCCCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 133 --LVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 133 --~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.++++|....--+...||.|++.. ...+..+++...|+|||.+++....
T Consensus 145 ~l~ivvGDgr~g~~e~a~YDaIhvGA-----aa~~~pq~l~dqL~~gGrllip~~~ 195 (237)
T KOG1661|consen 145 ELSIVVGDGRKGYAEQAPYDAIHVGA-----AASELPQELLDQLKPGGRLLIPVGQ 195 (237)
T ss_pred ceEEEeCCccccCCccCCcceEEEcc-----CccccHHHHHHhhccCCeEEEeecc
Confidence 267888888766789999998852 2344567788889999999888775
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.52 E-value=5e-07 Score=73.80 Aligned_cols=127 Identities=20% Similarity=0.253 Sum_probs=89.6
Q ss_pred HhHHHHHHHHHHHhccc----CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-------------------
Q 028410 77 QVTSYAHFFKHLQGKSL----LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL------------------- 133 (209)
Q Consensus 77 ~~~~~~~~~~~l~~~~~----~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~------------------- 133 (209)
+...+..++..+...-. -+.+.+||--|||.|+++..+|..|+ .+.|.|.|--|+-
T Consensus 33 R~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~P 111 (270)
T PF07942_consen 33 RDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYP 111 (270)
T ss_pred HHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEec
Confidence 33344555555543322 25578999999999999999999998 9999999876431
Q ss_pred ------------------------------------EEEcCCCCCCCCC---CceeeEEcccchhhh-CHHHHHHHHHHh
Q 028410 134 ------------------------------------VSRADPHNLPFFD---EAFDVAFTAHLAEAL-FPSRFVGEMERT 173 (209)
Q Consensus 134 ------------------------------------~~~~d~~~~~~~~---~~fD~i~~~~~~~~~-~~~~~l~~~~r~ 173 (209)
...||+.+..-++ ++||+|+.+.+.... +..+.+..+.++
T Consensus 112 f~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~l 191 (270)
T PF07942_consen 112 FVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHL 191 (270)
T ss_pred ceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHH
Confidence 2344444433333 799999998766655 789999999999
Q ss_pred cccCcEEEEEEecC-----C---------cccHHHHHHHhcccccc
Q 028410 174 VKIGGVCMVLMEEC-----A---------GREIKQIVELFRTSSFT 205 (209)
Q Consensus 174 LkpgG~lil~~~~~-----~---------~~~~~~~~~l~~~~~~~ 205 (209)
|||||. ++-++.. + .-+..+++++..+.||.
T Consensus 192 LkpgG~-WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~ 236 (270)
T PF07942_consen 192 LKPGGY-WINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFE 236 (270)
T ss_pred hccCCE-EEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCE
Confidence 999994 5555432 1 12567788888888773
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.50 E-value=7e-07 Score=78.64 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=74.9
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC---------------cEEEcCCCCCC-CCCCceeeEEc-
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP---------------LVSRADPHNLP-FFDEAFDVAFT- 154 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~---------------~~~~~d~~~~~-~~~~~fD~i~~- 154 (209)
.+++.+|||++||+|.-+.++++. +.+.++++|+++..+ .+...|...++ ...+.||.|+.
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 478999999999999999999983 457999999998833 24456665542 23467999995
Q ss_pred ---cc--chhh----------------h-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHH
Q 028410 155 ---AH--LAEA----------------L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVE 197 (209)
Q Consensus 155 ---~~--~~~~----------------~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~ 197 (209)
+. +... . -..+++.+..+.|||||.++.++.+....+.....+
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~ 255 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCL 255 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHH
Confidence 31 1110 0 126788999999999999988888765555555444
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.5e-07 Score=80.04 Aligned_cols=89 Identities=13% Similarity=0.128 Sum_probs=62.4
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCC----CCCCCceeeEE
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNL----PFFDEAFDVAF 153 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~----~~~~~~fD~i~ 153 (209)
...++.+|||+|||+|.++..+++.. .+|+|+|+++.++ +++.+|+.+. ++.+++||+|+
T Consensus 289 ~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 289 ELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred ccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 44677899999999999999999864 4999999999854 3778887652 23456799998
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
..---. .-...+++.+. .++|++.+++.+
T Consensus 368 ~dPPr~-G~~~~~l~~l~-~l~~~~ivyvsc 396 (431)
T TIGR00479 368 LDPPRK-GCAAEVLRTII-ELKPERIVYVSC 396 (431)
T ss_pred ECcCCC-CCCHHHHHHHH-hcCCCEEEEEcC
Confidence 742111 11244555544 488988655543
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.3e-07 Score=76.39 Aligned_cols=62 Identities=16% Similarity=0.088 Sum_probs=50.3
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC------------cEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP------------LVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~------------~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
...++.+|||+|||+|..+..+++.+. +|+|+|+++.++ +++++|+.++++++..+|.|+++
T Consensus 39 ~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 39 GPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred CCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEe
Confidence 457889999999999999999999764 999999999754 36788888887654335777775
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.3e-07 Score=73.32 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=67.9
Q ss_pred CeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC---------------cEEEcCCCCC---CCCCCceeeEEcccch
Q 028410 98 SKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP---------------LVSRADPHNL---PFFDEAFDVAFTAHLA 158 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~---------------~~~~~d~~~~---~~~~~~fD~i~~~~~~ 158 (209)
-.+||||||.|.+...+|+ .|...++|||+....+ .+++.|+..+ -+++++.|-|+.+.-+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 5899999999999999999 5778999999987722 2556666552 1355699999885322
Q ss_pred hhh---------CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 159 EAL---------FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 159 ~~~---------~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
-+. -...+++.+.++|||||.+.+.+...
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence 111 23789999999999999977776654
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-07 Score=81.01 Aligned_cols=91 Identities=26% Similarity=0.245 Sum_probs=79.2
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcccc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
..++..++|+|||.|....+++......++|+|.++... .++.+|+.+.|+++++||.+-+..+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 477789999999999999999997656999999987622 2788899999999999999999888
Q ss_pred hhhh-CHHHHHHHHHHhcccCcEEEEEE
Q 028410 158 AEAL-FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 158 ~~~~-~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
..|. ++..+++|+.|++||||+.+...
T Consensus 188 ~~~~~~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 188 VCHAPDLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred cccCCcHHHHHHHHhcccCCCceEEeHH
Confidence 8888 99999999999999999965543
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.46 E-value=7e-07 Score=78.27 Aligned_cols=84 Identities=23% Similarity=0.226 Sum_probs=59.6
Q ss_pred CCeEEEEcCCCChhHHHHHhc-----CCceEEEecCCCC----------------CCcEEEcCCCCCCCCCCceeeEEcc
Q 028410 97 HSKVLCVSAGAGHEVMAFNSI-----GVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~-----~~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
+..|+|+|||+|.++...++. +..+|++||-|+. .+.++.+|++++..+ .++|+|++-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 578999999999998776553 2469999999986 334899999998874 499999994
Q ss_pred cchhhh---CHHHHHHHHHHhcccCcEEE
Q 028410 156 HLAEAL---FPSRFVGEMERTVKIGGVCM 181 (209)
Q Consensus 156 ~~~~~~---~~~~~l~~~~r~LkpgG~li 181 (209)
.+.... -..+++....|.|||||.++
T Consensus 266 lLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 332211 23567888899999999753
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.8e-07 Score=74.51 Aligned_cols=60 Identities=17% Similarity=0.161 Sum_probs=50.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-------------CcEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------PLVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~-------------~~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
...++.+|||+|||+|..+..+++.+ .+++++|+++.+ +.++.+|+.+++++ .||.|+++
T Consensus 26 ~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~N 98 (258)
T PRK14896 26 EDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSN 98 (258)
T ss_pred CCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEc
Confidence 45788999999999999999999985 499999999763 34788898887765 48999885
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.9e-07 Score=75.93 Aligned_cols=91 Identities=19% Similarity=0.210 Sum_probs=66.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc-------------------EEEcCCCC-CCCCCCceeeEE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL-------------------VSRADPHN-LPFFDEAFDVAF 153 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~-------------------~~~~d~~~-~~~~~~~fD~i~ 153 (209)
.+..+||.+|+|.|..+.++.+. +..+++.+|++++.++ ++.+|..+ +...+++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 45689999999999999998884 5678999999998554 33344333 222357899999
Q ss_pred cccch-------hhhCHHHHHH-HHHHhcccCcEEEEEEe
Q 028410 154 TAHLA-------EALFPSRFVG-EMERTVKIGGVCMVLME 185 (209)
Q Consensus 154 ~~~~~-------~~~~~~~~l~-~~~r~LkpgG~lil~~~ 185 (209)
+.-.. .++...++++ .+.+.|+|||.+++-..
T Consensus 182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 86221 2234577888 89999999999766543
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.9e-07 Score=71.85 Aligned_cols=114 Identities=20% Similarity=0.189 Sum_probs=75.8
Q ss_pred hhHhhHhHHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCCC-------------cEEE
Q 028410 72 KSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSLP-------------LVSR 136 (209)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~~-------------~~~~ 136 (209)
+.|....+.+...+-.-++.-.++++.+||.+|+.+|...-+++.. + .+.|+++++|+... --+.
T Consensus 49 R~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl 128 (229)
T PF01269_consen 49 RVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPIL 128 (229)
T ss_dssp EEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEE
T ss_pred eecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeee
Confidence 3466666666655544444557799999999999999999999994 4 78999999998622 2467
Q ss_pred cCCCCCC---CCCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 137 ADPHNLP---FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 137 ~d~~~~~---~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.|+.... .--+.+|+|++. +.+.-+.+-+..+....||+||.++++...
T Consensus 129 ~DAr~P~~Y~~lv~~VDvI~~D-VaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa 180 (229)
T PF01269_consen 129 EDARHPEKYRMLVEMVDVIFQD-VAQPDQARIAALNARHFLKPGGHLIISIKA 180 (229)
T ss_dssp S-TTSGGGGTTTS--EEEEEEE--SSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred ccCCChHHhhcccccccEEEec-CCChHHHHHHHHHHHhhccCCcEEEEEEec
Confidence 7876532 223589999983 333223456678888999999999999865
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.6e-08 Score=75.54 Aligned_cols=110 Identities=15% Similarity=0.209 Sum_probs=81.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc------EEEcCCCCCCCCCCceeeEEcccchhhh-CHHHHH
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL------VSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSRFV 167 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~------~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l 167 (209)
..+.++||+|+|.|..+..++.. +.+|++.+.|..|.+ +-+....+..-.+-+||+|.|.++.... +|-+++
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kLL 189 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKLL 189 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcChHHHH
Confidence 44589999999999999999985 458999999988765 2122222222234579999998766544 999999
Q ss_pred HHHHHhccc-CcEEEEEEecC----------C----------------cccHHHHHHHhcccccc
Q 028410 168 GEMERTVKI-GGVCMVLMEEC----------A----------------GREIKQIVELFRTSSFT 205 (209)
Q Consensus 168 ~~~~r~Lkp-gG~lil~~~~~----------~----------------~~~~~~~~~l~~~~~~~ 205 (209)
+.++.+|.| .|++++..--+ + .++...+.++|++|||.
T Consensus 190 ~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~ 254 (288)
T KOG3987|consen 190 EDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYR 254 (288)
T ss_pred HHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCch
Confidence 999999999 88877763211 0 13566788999999983
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.8e-06 Score=65.03 Aligned_cols=99 Identities=16% Similarity=0.110 Sum_probs=76.3
Q ss_pred HHhcccCCCCCeEEEEcCCCChhHHHHHhcC--CceEEEecCCCC----------CCcEEEcCCCCCC-----CCCCcee
Q 028410 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNSIG--VADVTGVELMDS----------LPLVSRADPHNLP-----FFDEAFD 150 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~--~~~v~~vD~s~~----------~~~~~~~d~~~~~-----~~~~~fD 150 (209)
+...-....+.-|||+|.|||-++.++..+| ..+++++|.|++ ...++.||+.++. +.+..||
T Consensus 40 M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D 119 (194)
T COG3963 40 MASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFD 119 (194)
T ss_pred HHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeee
Confidence 3333455778899999999999999998864 358999999988 3347888888765 5678899
Q ss_pred eEEccc-c-hhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 151 VAFTAH-L-AEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 151 ~i~~~~-~-~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.|+|.- + .... -..++++++...|.+||.++.....
T Consensus 120 ~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 120 SVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 999962 1 1111 3478899999999999998888776
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.9e-07 Score=68.34 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=49.1
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.-.+..|+|+|||||.++...+-.|...|+++|+++++++ +..+|+.+. +..+|.++++
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimN 115 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMN 115 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEEC
Confidence 3567889999999999999999888789999999998554 677777766 4678888887
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.4e-06 Score=74.86 Aligned_cols=93 Identities=17% Similarity=0.044 Sum_probs=73.4
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-----------------EEEcCCCCC-C---CCCCceeeEEc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-----------------VSRADPHNL-P---FFDEAFDVAFT 154 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-----------------~~~~d~~~~-~---~~~~~fD~i~~ 154 (209)
.+.+|||+-|-||.++.+.+.-|..+||+||.|...++ ++++|+.++ . -...+||+|+.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 39999999999999999999988889999999998553 667776552 1 23459999999
Q ss_pred c---------cchhhh-CHHHHHHHHHHhcccCcEEEEEEecCC
Q 028410 155 A---------HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECA 188 (209)
Q Consensus 155 ~---------~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~ 188 (209)
. ...... +..+++....++|+|||.++++.+...
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 5 222222 568889999999999999888877653
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.4e-06 Score=67.32 Aligned_cols=95 Identities=18% Similarity=0.217 Sum_probs=63.9
Q ss_pred HhcccCCCCCeEEEEcCCCChhHHHHHhc--CCc--------eEEEecCCCCCC----------------cEEEcCCCCC
Q 028410 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVA--------DVTGVELMDSLP----------------LVSRADPHNL 142 (209)
Q Consensus 89 ~~~~~~~~~~~iLDiGcG~G~~~~~la~~--~~~--------~v~~vD~s~~~~----------------~~~~~d~~~~ 142 (209)
......+++..++|--||+|.+..+.+.. ... +++|.|++++++ .+.+.|+.++
T Consensus 21 l~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l 100 (179)
T PF01170_consen 21 LNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAREL 100 (179)
T ss_dssp HHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGG
T ss_pred HHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhc
Confidence 33456688999999999999999888763 222 388999999855 3778899999
Q ss_pred CCCCCceeeEEccc-----chh--hh--CHHHHHHHHHHhcccCcEEEEEE
Q 028410 143 PFFDEAFDVAFTAH-----LAE--AL--FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 143 ~~~~~~fD~i~~~~-----~~~--~~--~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
++.++++|.|+++- +.. .. -...+++++.+++++ ..+++..
T Consensus 101 ~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~ 150 (179)
T PF01170_consen 101 PLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT 150 (179)
T ss_dssp GGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred ccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence 98889999999971 111 11 126678899999999 4333333
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.3e-06 Score=69.64 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=54.1
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC-------------cEEEcCCCCCCCCCCcee---eEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-------------LVSRADPHNLPFFDEAFD---VAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~-------------~~~~~d~~~~~~~~~~fD---~i~~~~ 156 (209)
...++.+|||+|||+|..+..+++.+. .++++|+++.++ .++.+|+.+.+++ .+| .|++ +
T Consensus 26 ~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvs-N 101 (253)
T TIGR00755 26 NVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVS-N 101 (253)
T ss_pred CCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEE-c
Confidence 457789999999999999999999764 799999998743 3678888887764 466 6655 3
Q ss_pred chhhhCHHHHHHHHHH
Q 028410 157 LAEALFPSRFVGEMER 172 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r 172 (209)
+..+. ...++.++..
T Consensus 102 lPy~i-~~~il~~ll~ 116 (253)
T TIGR00755 102 LPYNI-SSPLIFKLLE 116 (253)
T ss_pred CChhh-HHHHHHHHhc
Confidence 43333 3344444443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.7e-07 Score=78.70 Aligned_cols=107 Identities=13% Similarity=0.082 Sum_probs=76.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC---------------cEEEcCCCCC--CCCCCceeeEEccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP---------------LVSRADPHNL--PFFDEAFDVAFTAH 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~---------------~~~~~d~~~~--~~~~~~fD~i~~~~ 156 (209)
..+..+||||||.|.+...+|. .+...++|+|+....+ .++..|+..+ -++++++|-|+.+.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 5678999999999999999998 5777999999987622 2444454322 26788999998863
Q ss_pred chhh-----h----CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccc
Q 028410 157 LAEA-----L----FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSS 203 (209)
Q Consensus 157 ~~~~-----~----~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~ 203 (209)
-+-+ . -...++..+.++|||||.+.+.+...+ -+....+.+..++
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~--y~~~~~~~~~~~~ 479 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIEN--YFYEAIELIQQNG 479 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHH--HHHHHHHHHHhCC
Confidence 2211 1 238899999999999999777666533 3444455555443
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.7e-06 Score=62.33 Aligned_cols=76 Identities=12% Similarity=0.067 Sum_probs=56.8
Q ss_pred CCCCeEEEEcCCCCh-hHHHHHhcCCceEEEecCCCCCC--------cEEEcCCCCCCCC-CCceeeEEcccchhhhCHH
Q 028410 95 FNHSKVLCVSAGAGH-EVMAFNSIGVADVTGVELMDSLP--------LVSRADPHNLPFF-DEAFDVAFTAHLAEALFPS 164 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~-~~~~la~~~~~~v~~vD~s~~~~--------~~~~~d~~~~~~~-~~~fD~i~~~~~~~~~~~~ 164 (209)
.++.+++|||||+|. .+..|++.|+ +|+++|+++..+ .+++.|+.+.++. -..+|+|.+..- |.
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp-----p~ 88 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP-----PR 88 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC-----CH
Confidence 456899999999996 8888998887 999999999854 5889999887653 477999988432 34
Q ss_pred HHHHHHHHhccc
Q 028410 165 RFVGEMERTVKI 176 (209)
Q Consensus 165 ~~l~~~~r~Lkp 176 (209)
++..-+.++-|.
T Consensus 89 el~~~~~~la~~ 100 (134)
T PRK04148 89 DLQPFILELAKK 100 (134)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.5e-06 Score=65.09 Aligned_cols=107 Identities=17% Similarity=0.166 Sum_probs=76.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcc--c
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTA--H 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~--~ 156 (209)
....-++|||||+|..+..+++. +.....++|+|+.+.+ .++.|...- +.+++.|+++.+ +
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPY 120 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCc
Confidence 34789999999999999999983 5567889999998543 556665542 234888888876 1
Q ss_pred ch--------------hhh--C----HHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 157 LA--------------EAL--F----PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 157 ~~--------------~~~--~----~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+. +.. + ..+++..+-..|.|.|+++++.-. .+..+++.+.++..++
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~--~N~p~ei~k~l~~~g~ 186 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR--ANKPKEILKILEKKGY 186 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh--hcCHHHHHHHHhhccc
Confidence 11 000 1 145666677888899999988776 4467788888887766
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.8e-06 Score=70.25 Aligned_cols=90 Identities=29% Similarity=0.354 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------cEEEcCCCCCCCCCCceeeEEcccchhhhC---
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------LVSRADPHNLPFFDEAFDVAFTAHLAEALF--- 162 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~--- 162 (209)
..+..++|+|||.|-... ..+..-++|.|++...+ ....+|+.++|+++.+||.+++..+.||+.
T Consensus 44 ~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred CCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence 568999999999987653 22334678888887644 377889999999999999999988888882
Q ss_pred -HHHHHHHHHHhcccCcEEEEEEecC
Q 028410 163 -PSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 163 -~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
...+++++.|++||||...+.+...
T Consensus 121 RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 121 RRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEehh
Confidence 3889999999999999988877654
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.9e-06 Score=66.39 Aligned_cols=102 Identities=15% Similarity=0.158 Sum_probs=74.1
Q ss_pred CC-CCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCc-eeeEEccc
Q 028410 95 FN-HSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP---------------LVSRADPHNLPFFDEA-FDVAFTAH 156 (209)
Q Consensus 95 ~~-~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~-fD~i~~~~ 156 (209)
.. +.+++|||+|.|.-+..+|- .+..+++-+|...+.+ .++++.+++..- +.. ||+|.+..
T Consensus 65 ~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~-~~~~~D~vtsRA 143 (215)
T COG0357 65 DGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ-EKKQYDVVTSRA 143 (215)
T ss_pred cccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc-ccccCcEEEeeh
Confidence 44 69999999999999999884 5666899999988733 366777777652 123 99999977
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhc
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~ 200 (209)
+.. ...+..-+...+|+||.++..-.....++..+......
T Consensus 144 va~---L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~ 184 (215)
T COG0357 144 VAS---LNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAIL 184 (215)
T ss_pred ccc---hHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHH
Confidence 664 66777778899999998765555544455555544433
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.7e-06 Score=74.36 Aligned_cols=98 Identities=11% Similarity=0.084 Sum_probs=65.2
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------------EEEcCCCCCCC-CCCceeeEEcccchh
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------VSRADPHNLPF-FDEAFDVAFTAHLAE 159 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------------~~~~d~~~~~~-~~~~fD~i~~~~~~~ 159 (209)
++.+|||+|||+|.++..++..+ .+|+|+|+++.+++ +..+|+.+... ..++||+|+.+---.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 45799999999999999999876 59999999998443 67777755321 124699998852211
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHH
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVEL 198 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l 198 (209)
.. ..+++..+. .++|++.+++.+.. ....+.+..+
T Consensus 312 G~-~~~~l~~l~-~~~p~~ivyvsc~p--~TlaRDl~~L 346 (374)
T TIGR02085 312 GI-GKELCDYLS-QMAPKFILYSSCNA--QTMAKDIAEL 346 (374)
T ss_pred CC-cHHHHHHHH-hcCCCeEEEEEeCH--HHHHHHHHHh
Confidence 11 234444444 47999876666543 3344445444
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.5e-06 Score=69.21 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=63.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-c-CCceEEEecCCCCC----------------CcEEEcCCCCC-C-C-----CCCce
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-I-GVADVTGVELMDSL----------------PLVSRADPHNL-P-F-----FDEAF 149 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~-~~~~v~~vD~s~~~----------------~~~~~~d~~~~-~-~-----~~~~f 149 (209)
.+..+|||+|+++|+.+.+++. . +.++++++|.+++. ++++.+|+.+. + + ..++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 5678999999999999999987 3 35799999999873 33667776552 1 1 13689
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccCcEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil 182 (209)
|+||..+- .-.....+..+.+.|+|||.+++
T Consensus 158 D~iFiDad--K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 158 DFIFVDAD--KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred cEEEecCC--HHHhHHHHHHHHHhcCCCeEEEE
Confidence 99998532 11345667778899999999654
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.3e-06 Score=64.91 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=78.9
Q ss_pred hHhhHhHHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc-------------EEEcC
Q 028410 73 SWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL-------------VSRAD 138 (209)
Q Consensus 73 ~~~~~~~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~-------------~~~~d 138 (209)
.|....+.+...+-.-...-.++++.+||-+|+.+|...-+++. .|.+.++++++|+.+.. -+.+|
T Consensus 53 ~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~D 132 (231)
T COG1889 53 EWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILED 132 (231)
T ss_pred eeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecc
Confidence 35555554444443333334679999999999999999999999 47789999999998442 34555
Q ss_pred CCCCC---CCCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 139 PHNLP---FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 139 ~~~~~---~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
+.... .--+..|+|+.. +...-+..-+..++...||+||.++++....
T Consensus 133 A~~P~~Y~~~Ve~VDviy~D-VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKAr 183 (231)
T COG1889 133 ARKPEKYRHLVEKVDVIYQD-VAQPNQAEILADNAEFFLKKGGYVVIAIKAR 183 (231)
T ss_pred cCCcHHhhhhcccccEEEEe-cCCchHHHHHHHHHHHhcccCCeEEEEEEee
Confidence 54421 223668999872 2222233556688899999999988887654
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.2e-06 Score=66.86 Aligned_cols=91 Identities=14% Similarity=-0.080 Sum_probs=60.6
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------------cEEEcCCCCC-C-C-CC-CceeeEEc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------------LVSRADPHNL-P-F-FD-EAFDVAFT 154 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------------~~~~~d~~~~-~-~-~~-~~fD~i~~ 154 (209)
-++.++||++||+|.++.+++..|...|+++|.++.++ +++.+|+.+. . + .. ..||+|+.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 35789999999999999999998877999999998733 2566776442 1 1 12 24788888
Q ss_pred ccchhhhCHHHHHHHHH--HhcccCcEEEEEEe
Q 028410 155 AHLAEALFPSRFVGEME--RTVKIGGVCMVLME 185 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~--r~LkpgG~lil~~~ 185 (209)
.--.......+++..+. ..|++||.+++-..
T Consensus 128 DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 DPPFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 52222122344444443 46888887555443
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.5e-05 Score=65.67 Aligned_cols=89 Identities=17% Similarity=0.086 Sum_probs=66.8
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC--------CcEEEcCCCCCCCCCCceeeEEcccchhhhCHH
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------PLVSRADPHNLPFFDEAFDVAFTAHLAEALFPS 164 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~--------~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~ 164 (209)
.+.++.++||+||++|.++..+.+.|. +|++||..+-. +....+|.....-+.+.+|+++|.-+.. |.
T Consensus 208 ~~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~---P~ 283 (357)
T PRK11760 208 RLAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK---PA 283 (357)
T ss_pred ccCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC---HH
Confidence 458899999999999999999999986 99999976542 2355566555432367899999965544 88
Q ss_pred HHHHHHHHhcccC--cEEEEEEe
Q 028410 165 RFVGEMERTVKIG--GVCMVLME 185 (209)
Q Consensus 165 ~~l~~~~r~Lkpg--G~lil~~~ 185 (209)
++.+-|.+.|..| ...++...
T Consensus 284 rva~lm~~Wl~~g~cr~aIfnLK 306 (357)
T PRK11760 284 RVAELMAQWLVNGWCREAIFNLK 306 (357)
T ss_pred HHHHHHHHHHhcCcccEEEEEEE
Confidence 8888888888776 34444443
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.2e-06 Score=71.70 Aligned_cols=91 Identities=22% Similarity=0.303 Sum_probs=75.1
Q ss_pred CCCC-eEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcccchh
Q 028410 95 FNHS-KVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 95 ~~~~-~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
.+.. ++|-+|||.-.+...+-+.|+..|+.+|+|+..++ +...|+..+.|++++||+++.-...+
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccc
Confidence 5555 99999999999999999989999999999987442 78899999999999999999854333
Q ss_pred hh--C---------HHHHHHHHHHhcccCcEEEEEEe
Q 028410 160 AL--F---------PSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 160 ~~--~---------~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
++ + ....+.+++|+++|||+.+.++.
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 33 1 24567999999999999877766
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-05 Score=61.57 Aligned_cols=114 Identities=12% Similarity=0.040 Sum_probs=75.8
Q ss_pred cccCCCCCeEEEEcCCCChhHHHHHh--cCCceEEEecCCCC----CCcEEEc-CCCCC--------CCCCCceeeEEcc
Q 028410 91 KSLLFNHSKVLCVSAGAGHEVMAFNS--IGVADVTGVELMDS----LPLVSRA-DPHNL--------PFFDEAFDVAFTA 155 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~G~~~~~la~--~~~~~v~~vD~s~~----~~~~~~~-d~~~~--------~~~~~~fD~i~~~ 155 (209)
.+.++++.+|||+||.+|.+++...+ .+.+.|.|||+..- ...++.+ |+.+. .+|+...|+|++.
T Consensus 64 y~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSD 143 (232)
T KOG4589|consen 64 YRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSD 143 (232)
T ss_pred ccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEec
Confidence 45679999999999999999998877 37889999998754 2235555 66663 2578999999995
Q ss_pred cc--------hhhh---CH-HHHHHHHHHhcccCcEEEEEEecC--CcccHHHHHHHhccccc
Q 028410 156 HL--------AEAL---FP-SRFVGEMERTVKIGGVCMVLMEEC--AGREIKQIVELFRTSSF 204 (209)
Q Consensus 156 ~~--------~~~~---~~-~~~l~~~~r~LkpgG~lil~~~~~--~~~~~~~~~~l~~~~~~ 204 (209)
.. ..|. +. ..++.-....++|+|.++.=+... .+...+.+.+.|..-+.
T Consensus 144 MapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk~ 206 (232)
T KOG4589|consen 144 MAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVKK 206 (232)
T ss_pred cCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcEe
Confidence 11 1111 11 334444556678999977666553 23344455556654443
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.6e-06 Score=68.36 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=53.6
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC------------------------cEEEcCCCCCCCCC
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP------------------------LVSRADPHNLPFFD 146 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~------------------------~~~~~d~~~~~~~~ 146 (209)
..++++...+|+|||.|....+.+. .+..+.+|||+.+... ++..+|+.+.++.+
T Consensus 38 ~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~ 117 (205)
T PF08123_consen 38 LNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVK 117 (205)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHH
T ss_pred hCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHh
Confidence 3578999999999999999888876 5777899999998722 25566666543211
Q ss_pred ---CceeeEEcccchhhhCHHHHHHHHHHhcccCcEEE
Q 028410 147 ---EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCM 181 (209)
Q Consensus 147 ---~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~li 181 (209)
...|+|++++....-+....+.++...||+|.+++
T Consensus 118 ~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 118 DIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARII 155 (205)
T ss_dssp HHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEE
T ss_pred hhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEE
Confidence 35799999875432234555677778888887754
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.2e-05 Score=66.33 Aligned_cols=89 Identities=22% Similarity=0.283 Sum_probs=65.6
Q ss_pred CeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc-------------------EEEcCCCCC-CCCCCceeeEEccc
Q 028410 98 SKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL-------------------VSRADPHNL-PFFDEAFDVAFTAH 156 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~-------------------~~~~d~~~~-~~~~~~fD~i~~~~ 156 (209)
.+||-+|-|.|..++++.+. +..+++.+|+++..++ ++.+|..+. .-...+||+|++..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 69999999999999999995 5789999999998554 233333221 11234899999963
Q ss_pred chh-----hhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 157 LAE-----ALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 157 ~~~-----~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
... .++...+++.+++.|+++|.++.-..+
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 332 124489999999999999997666333
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.7e-06 Score=70.77 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=49.7
Q ss_pred cccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEc
Q 028410 91 KSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFT 154 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~ 154 (209)
.....++.+|||||||+|.++..+++.+ .+|+++|+++.+ ++++.+|+.+.++ ..||.|++
T Consensus 31 ~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~Vva 107 (294)
T PTZ00338 31 KAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDVCVA 107 (294)
T ss_pred hcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCEEEe
Confidence 3356788999999999999999999875 489999999763 3477888877654 36899887
Q ss_pred c
Q 028410 155 A 155 (209)
Q Consensus 155 ~ 155 (209)
+
T Consensus 108 N 108 (294)
T PTZ00338 108 N 108 (294)
T ss_pred c
Confidence 5
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.5e-06 Score=68.86 Aligned_cols=111 Identities=17% Similarity=0.226 Sum_probs=77.6
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcC-CceEEEecCCCCCCcEE----------------------EcCCCCC-CCCCCce
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIG-VADVTGVELMDSLPLVS----------------------RADPHNL-PFFDEAF 149 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~-~~~v~~vD~s~~~~~~~----------------------~~d~~~~-~~~~~~f 149 (209)
++.-.++|-+|.|.|...+++.++| ..+|+-+|++|+|+++. ..|+.++ .-..+.|
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 3677899999999999999999986 88999999999988732 2222221 1124689
Q ss_pred eeEEcc------cchhhhCHHHHHHHHHHhcccCcEEEEEEecC--CcccHHHHHHHhccccc
Q 028410 150 DVAFTA------HLAEALFPSRFVGEMERTVKIGGVCMVLMEEC--AGREIKQIVELFRTSSF 204 (209)
Q Consensus 150 D~i~~~------~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~--~~~~~~~~~~l~~~~~~ 204 (209)
|+|+.. .....+...++...+.|.|+++|.+++...++ ....+..+.+-+++.|+
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~ 429 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGY 429 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcc
Confidence 999874 12222345889999999999999977665553 22344445555555543
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.7e-06 Score=67.72 Aligned_cols=110 Identities=12% Similarity=0.069 Sum_probs=71.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-----------------------------------------
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------------------------------- 133 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------------------------------------- 133 (209)
..+.++||||||+-.....-+..-..+|+..|..+...+
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 357799999999865543333323568999999876221
Q ss_pred ---EEEcCCCCCC-CCC-----CceeeEEcccchhhh--CH---HHHHHHHHHhcccCcEEEEEEecCC-----------
Q 028410 134 ---VSRADPHNLP-FFD-----EAFDVAFTAHLAEAL--FP---SRFVGEMERTVKIGGVCMVLMEECA----------- 188 (209)
Q Consensus 134 ---~~~~d~~~~~-~~~-----~~fD~i~~~~~~~~~--~~---~~~l~~~~r~LkpgG~lil~~~~~~----------- 188 (209)
++..|+.+.+ +.. .+||+|++....+.. +. ..+++++.++|||||.+++...-..
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~ 214 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFP 214 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecc
Confidence 6788887743 332 359999998766655 43 7788999999999999988754321
Q ss_pred --cccHHHHHHHhccccc
Q 028410 189 --GREIKQIVELFRTSSF 204 (209)
Q Consensus 189 --~~~~~~~~~l~~~~~~ 204 (209)
.-....+.+.+..+|+
T Consensus 215 ~l~l~ee~v~~al~~aG~ 232 (256)
T PF01234_consen 215 CLPLNEEFVREALEEAGF 232 (256)
T ss_dssp ---B-HHHHHHHHHHTTE
T ss_pred cccCCHHHHHHHHHHcCC
Confidence 1245556777777776
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.2e-06 Score=68.32 Aligned_cols=88 Identities=14% Similarity=0.040 Sum_probs=65.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcEE-------EcCCCC--------C-CCCCCceeeEEcccch
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVS-------RADPHN--------L-PFFDEAFDVAFTAHLA 158 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~~-------~~d~~~--------~-~~~~~~fD~i~~~~~~ 158 (209)
.++.+||=+|.|.|..++++.+.+. +|+-+|++++.+++. .+...+ . .-..++||+|+...
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs-- 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQ-- 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcC--
Confidence 6789999999999999999999864 999999999866411 111111 0 11237899999853
Q ss_pred hhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 159 EALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 159 ~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
.++..+++.++|.|+|||.++....++
T Consensus 148 --~~~~~fy~~~~~~L~~~Gi~v~Qs~sp 174 (262)
T PRK00536 148 --EPDIHKIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_pred --CCChHHHHHHHHhcCCCcEEEECCCCc
Confidence 246888999999999999966654443
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.1e-06 Score=69.22 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=69.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-----------------EEEcCCCCC-C--CCCCceeeEEc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-----------------VSRADPHNL-P--FFDEAFDVAFT 154 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-----------------~~~~d~~~~-~--~~~~~fD~i~~ 154 (209)
..+.+|||+-|=||.++.+.+.-|..+|+.||.|..+++ ++..|+.+. . -..++||+|++
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 568899999999999999988878779999999987443 666666541 1 12468999999
Q ss_pred c------cchhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHh
Q 028410 155 A------HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELF 199 (209)
Q Consensus 155 ~------~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~ 199 (209)
. .-.... +..+++..+.++|+|||.++.+..+. ..+.+.+.+.+
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~-~i~~~~l~~~~ 252 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH-HISPDFLLEAV 252 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T-TS-HHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc-ccCHHHHHHHH
Confidence 5 111111 45778899999999999987776654 33444444433
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=4e-06 Score=72.24 Aligned_cols=87 Identities=24% Similarity=0.267 Sum_probs=65.6
Q ss_pred CCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc---------------EEEcCCCCCCCCCCceeeEEcccchhh
Q 028410 97 HSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL---------------VSRADPHNLPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~---------------~~~~d~~~~~~~~~~fD~i~~~~~~~~ 160 (209)
+.+|||++||+|..+..++. .+..+|+++|+++.+++ +..+|+..+-...+.||+|+..-.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 56899999999999999987 45569999999987443 556666543211467999988532
Q ss_pred hCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 161 LFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 161 ~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
..+..++....+.+++||.+++....
T Consensus 135 Gs~~~~l~~al~~~~~~gilyvSAtD 160 (382)
T PRK04338 135 GSPAPFLDSAIRSVKRGGLLCVTATD 160 (382)
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEecC
Confidence 23577888878889999998888544
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.9e-05 Score=56.14 Aligned_cols=88 Identities=28% Similarity=0.378 Sum_probs=63.7
Q ss_pred EEEEcCCCChhHHHHHhc-CC-ceEEEecCCCCC---------------CcEEEcCCCC--CCCCC-CceeeEEcccchh
Q 028410 100 VLCVSAGAGHEVMAFNSI-GV-ADVTGVELMDSL---------------PLVSRADPHN--LPFFD-EAFDVAFTAHLAE 159 (209)
Q Consensus 100 iLDiGcG~G~~~~~la~~-~~-~~v~~vD~s~~~---------------~~~~~~d~~~--~~~~~-~~fD~i~~~~~~~ 159 (209)
++|+|||+|... .+... +. ..++++|+++.+ +.+..+|... .++.+ ..||++.+....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999976 34443 21 388899998752 2456667665 67766 4899993333333
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEecCC
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEECA 188 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~~~ 188 (209)
+..+...+.++.+.++|+|.+++......
T Consensus 131 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 131 LLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 33578999999999999999888876643
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.5e-05 Score=67.03 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=42.0
Q ss_pred CCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc-----------------EE-EcCCCCCC----CCCCceeeE
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL-----------------VS-RADPHNLP----FFDEAFDVA 152 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~-----------------~~-~~d~~~~~----~~~~~fD~i 152 (209)
++.++||||||+|.....++. ....+++|+|+++.+++ +. +.|..++. .+++.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 578999999999988777766 33359999999987443 21 22222211 246789999
Q ss_pred Ecc
Q 028410 153 FTA 155 (209)
Q Consensus 153 ~~~ 155 (209)
+|+
T Consensus 194 vcN 196 (321)
T PRK11727 194 LCN 196 (321)
T ss_pred EeC
Confidence 997
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.6e-05 Score=61.61 Aligned_cols=106 Identities=15% Similarity=0.131 Sum_probs=74.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-cC--CceEEEecCCCCCC----------------cEEEcCCCCCC-C--CCCcee
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-IG--VADVTGVELMDSLP----------------LVSRADPHNLP-F--FDEAFD 150 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~~--~~~v~~vD~s~~~~----------------~~~~~d~~~~~-~--~~~~fD 150 (209)
.-..+.+||||+||.|+....... .+ ..+|.-.|.|+..+ .|.++|+.+.. + -+-..+
T Consensus 132 ~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 132 EQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred hcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCC
Confidence 336789999999999988877665 33 35899999999844 37888887732 1 234578
Q ss_pred eEEcccchhhh-CH---HHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHh
Q 028410 151 VAFTAHLAEAL-FP---SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELF 199 (209)
Q Consensus 151 ~i~~~~~~~~~-~~---~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~ 199 (209)
+++.+.+++.+ |- ...+..+.+.+.|||+++.. +.+-..+...+...+
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT-gQPwHPQle~IAr~L 263 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT-GQPWHPQLEMIARVL 263 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc-CCCCCcchHHHHHHH
Confidence 99998888877 42 45678899999999997544 333333443333333
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.9e-06 Score=67.56 Aligned_cols=93 Identities=22% Similarity=0.236 Sum_probs=66.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcC-CceEEEecCCCCCCc-------------------EEEcCCCCC-CCCCC-ceeeE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIG-VADVTGVELMDSLPL-------------------VSRADPHNL-PFFDE-AFDVA 152 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~-~~~v~~vD~s~~~~~-------------------~~~~d~~~~-~~~~~-~fD~i 152 (209)
.++.+||-+|-|.|..+.++.+.+ ..+++.+|+++..++ ++.+|.... .-..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 578999999999999999999864 679999999998543 445554331 11233 89999
Q ss_pred Ecccch-----hhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 153 FTAHLA-----EALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 153 ~~~~~~-----~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
+..-.. ..+...++++.+.+.|+|||.+++-....
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~ 194 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSP 194 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCc
Confidence 985222 12345899999999999999988776544
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.8e-06 Score=63.56 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=53.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
-++.+++|+|||.|-.....+..+...|.|+|+.+++++ +++.|+.++.+..+.||.++.+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviN 121 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVIN 121 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEec
Confidence 468999999999999998777776779999999998553 7888998888888999999987
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.7e-06 Score=65.63 Aligned_cols=110 Identities=18% Similarity=0.162 Sum_probs=87.0
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-c-CCceEEEecCCCC----------------CCcEEEcCCCCCCCC--CCceeeE
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-I-GVADVTGVELMDS----------------LPLVSRADPHNLPFF--DEAFDVA 152 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~-~~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~--~~~fD~i 152 (209)
..+|+.+|++-|.|+|..+.++++ . +.+.++..|+-+. .+.+...|+....|. +..+|.|
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaV 181 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAV 181 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceE
Confidence 679999999999999999999998 3 6789999999765 334778888886654 5789999
Q ss_pred EcccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccccc
Q 028410 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFTEA 207 (209)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (209)
+.. + ..|..++-.+.++||.+|.- +|..++.-++.+...+++..++|+.+
T Consensus 182 FLD-l---PaPw~AiPha~~~lk~~g~r-~csFSPCIEQvqrtce~l~~~gf~~i 231 (314)
T KOG2915|consen 182 FLD-L---PAPWEAIPHAAKILKDEGGR-LCSFSPCIEQVQRTCEALRSLGFIEI 231 (314)
T ss_pred EEc-C---CChhhhhhhhHHHhhhcCce-EEeccHHHHHHHHHHHHHHhCCCceE
Confidence 872 1 24788888899999988753 45445557788889999999998654
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.5e-05 Score=65.86 Aligned_cols=105 Identities=15% Similarity=0.049 Sum_probs=81.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcccch
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
.+|..|+|+=||-|.++..+|..+..+|+++|+||.++ ..+++|.......-+.+|-|++.+..
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 67999999999999999999998776699999999843 37789988877655899999997654
Q ss_pred hhhCHHHHHHHHHHhcccCcEEEEEEecCCcc----cHHHHHHHhccc
Q 028410 159 EALFPSRFVGEMERTVKIGGVCMVLMEECAGR----EIKQIVELFRTS 202 (209)
Q Consensus 159 ~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~----~~~~~~~l~~~~ 202 (209)
. ...++....+.+|+||.+-......... -...+.+..++.
T Consensus 267 ~---a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~ 311 (341)
T COG2520 267 S---AHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKG 311 (341)
T ss_pred c---chhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhc
Confidence 3 4567777888899999976666555443 345566655554
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.7e-05 Score=65.66 Aligned_cols=109 Identities=19% Similarity=0.181 Sum_probs=76.5
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcC---CceEEEecCCCCCC---------------cEEEcCCCCCC---CCCCceee
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIG---VADVTGVELMDSLP---------------LVSRADPHNLP---FFDEAFDV 151 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~---~~~v~~vD~s~~~~---------------~~~~~d~~~~~---~~~~~fD~ 151 (209)
..+++.+|||+++++|.-+.++++.. ...|+++|.++..+ .+...|....+ ...++||.
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 45889999999999999999999842 23569999999722 25566665543 22236999
Q ss_pred EEcc------cch----------------hhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHH-Hhcc
Q 028410 152 AFTA------HLA----------------EAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVE-LFRT 201 (209)
Q Consensus 152 i~~~------~~~----------------~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~-l~~~ 201 (209)
|+.. .+. ... -..+++....+.|||||.++.++.+....+.....+ ++.+
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~ 306 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLER 306 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHh
Confidence 9974 111 111 136788999999999999999988876555555443 4433
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00012 Score=58.37 Aligned_cols=92 Identities=17% Similarity=0.121 Sum_probs=70.1
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-----------EEEcCCCCCCC--CCCceeeEEcccchh
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-----------VSRADPHNLPF--FDEAFDVAFTAHLAE 159 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-----------~~~~d~~~~~~--~~~~fD~i~~~~~~~ 159 (209)
..-++..+||+|+.||.++..+.+.|...|+++|..-..+. ....|+..+.- -.+..|+++|.-.+
T Consensus 76 l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSF- 154 (245)
T COG1189 76 LDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSF- 154 (245)
T ss_pred cCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeeh-
Confidence 34789999999999999999999999899999999886553 33444444331 12367899884322
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+....++..+...++|+|.++..+..
T Consensus 155 -ISL~~iLp~l~~l~~~~~~~v~LvKP 180 (245)
T COG1189 155 -ISLKLILPALLLLLKDGGDLVLLVKP 180 (245)
T ss_pred -hhHHHHHHHHHHhcCCCceEEEEecc
Confidence 24688899999999999998888754
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.5e-06 Score=64.32 Aligned_cols=83 Identities=19% Similarity=0.173 Sum_probs=57.3
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEccc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
..++..|+|+.||-|.++..+++. ....|+++|++|..+ ....+|..+..- .+.||-|+++.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 488999999999999999999983 345899999998833 367888887754 88999999864
Q ss_pred chhhhCHHHHHHHHHHhcccCcEE
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVC 180 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~l 180 (209)
... ...++..+.+.+|+||.+
T Consensus 178 p~~---~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 178 PES---SLEFLDAALSLLKEGGII 198 (200)
T ss_dssp TSS---GGGGHHHHHHHEEEEEEE
T ss_pred hHH---HHHHHHHHHHHhcCCcEE
Confidence 333 235677889999999974
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.5e-06 Score=65.40 Aligned_cols=93 Identities=19% Similarity=0.160 Sum_probs=62.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc----------------EEEcCCCC-CC---CCCCceeeEEc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------VSRADPHN-LP---FFDEAFDVAFT 154 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------------~~~~d~~~-~~---~~~~~fD~i~~ 154 (209)
-++.++||+-||||..+.+...+|..+|+.||.++.... ++..|... ++ -...+||+|++
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 478999999999999999999899889999999987332 45566433 21 24689999999
Q ss_pred ccchhhhC-HHHHHHHHH--HhcccCcEEEEEEecC
Q 028410 155 AHLAEALF-PSRFVGEME--RTVKIGGVCMVLMEEC 187 (209)
Q Consensus 155 ~~~~~~~~-~~~~l~~~~--r~LkpgG~lil~~~~~ 187 (209)
.--...-. ..+++..+. ..|+++|.+++-....
T Consensus 121 DPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp --STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 63222112 366777776 7899999877766554
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.8e-05 Score=66.23 Aligned_cols=108 Identities=19% Similarity=0.227 Sum_probs=68.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh--------cCCceEEEecCCCCCCc-----------------EEEcCCCCCCCC--
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS--------IGVADVTGVELMDSLPL-----------------VSRADPHNLPFF-- 145 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~--------~~~~~v~~vD~s~~~~~-----------------~~~~d~~~~~~~-- 145 (209)
...++.+|+|-+||+|.+..++.+ ....+++|+|+++.+.. +..+|....+..
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence 446778999999999999888765 13469999999987331 456665544332
Q ss_pred CCceeeEEccc---ch----hhh---------------CHHHHHHHHHHhcccCcEEEEEEecC---CcccHHHHHHHhc
Q 028410 146 DEAFDVAFTAH---LA----EAL---------------FPSRFVGEMERTVKIGGVCMVLMEEC---AGREIKQIVELFR 200 (209)
Q Consensus 146 ~~~fD~i~~~~---~~----~~~---------------~~~~~l~~~~r~LkpgG~lil~~~~~---~~~~~~~~~~l~~ 200 (209)
...||+|+++- .. ... ....++..+.+.||+||++.+++... .......+++.+-
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll 202 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLL 202 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHH
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHHH
Confidence 47899999971 11 000 01358899999999999998888763 2223455665443
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.2e-05 Score=62.55 Aligned_cols=119 Identities=13% Similarity=0.065 Sum_probs=69.8
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHh-c-CCceEEEecCCCCCCcE---EEcC------------CCCCCCC
Q 028410 83 HFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNS-I-GVADVTGVELMDSLPLV---SRAD------------PHNLPFF 145 (209)
Q Consensus 83 ~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~-~-~~~~v~~vD~s~~~~~~---~~~d------------~~~~~~~ 145 (209)
.++.++.....--.+.+|||+|||+|....+..+ . ...+++++|.|+.|+++ +..+ ......+
T Consensus 20 ~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 99 (274)
T PF09243_consen 20 RVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLP 99 (274)
T ss_pred HHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccccc
Confidence 3344443333334677999999999988777766 3 35689999999997751 0000 1100011
Q ss_pred CCceeeEEcccchhhh-C--HHHHHHHHHHhcccCcEEEEEEecC--CcccHHHHHHHhcccc
Q 028410 146 DEAFDVAFTAHLAEAL-F--PSRFVGEMERTVKIGGVCMVLMEEC--AGREIKQIVELFRTSS 203 (209)
Q Consensus 146 ~~~fD~i~~~~~~~~~-~--~~~~l~~~~r~LkpgG~lil~~~~~--~~~~~~~~~~l~~~~~ 203 (209)
-...|+|+++|++..+ + ...+++.+.+.+.+ .++++.... +........+.+...+
T Consensus 100 ~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~ 160 (274)
T PF09243_consen 100 FPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKG 160 (274)
T ss_pred CCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCC
Confidence 2234999999988888 3 35555666665555 655554443 2334444555554433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.9e-05 Score=67.11 Aligned_cols=123 Identities=16% Similarity=0.170 Sum_probs=74.5
Q ss_pred hhHhhHhHHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCC-CCCCc---------EEEcCCCC
Q 028410 72 KSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELM-DSLPL---------VSRADPHN 141 (209)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s-~~~~~---------~~~~d~~~ 141 (209)
+.|......+..++... .....-..|+|+.+|.|.++.+|.+.+..-...+=.+ +.-+. ..+--.+.
T Consensus 344 ~~Wk~~V~~Y~~l~~~~---i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~ 420 (506)
T PF03141_consen 344 KHWKKRVSHYKKLLGLA---IKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEA 420 (506)
T ss_pred HHHHHHHHHHHHhhccc---ccccceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhc
Confidence 34555555544443311 1224457899999999999999998764322222111 11111 11222334
Q ss_pred CCCCCCceeeEEcccchhhh----CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhc
Q 028410 142 LPFFDEAFDVAFTAHLAEAL----FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (209)
Q Consensus 142 ~~~~~~~fD~i~~~~~~~~~----~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~ 200 (209)
++.=+.+||++.+++++... +...++-||-|+|||||.+++=-. .+-...+.++++
T Consensus 421 fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~---~~vl~~v~~i~~ 480 (506)
T PF03141_consen 421 FSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT---VDVLEKVKKIAK 480 (506)
T ss_pred cCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc---HHHHHHHHHHHH
Confidence 56557999999998776544 568999999999999999655332 233444444444
|
; GO: 0008168 methyltransferase activity |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.89 E-value=4e-05 Score=62.16 Aligned_cols=71 Identities=21% Similarity=0.220 Sum_probs=58.6
Q ss_pred HHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------------cEEEcCCCCCCCC
Q 028410 82 AHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------------LVSRADPHNLPFF 145 (209)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~ 145 (209)
...+..+...+.++++..|||+|.|||..+..+.+.|. +|+++|+++.|+ .++.+|+...++
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~- 121 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL- 121 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-
Confidence 44566667777889999999999999999999999875 999999999855 378888877654
Q ss_pred CCceeeEEcc
Q 028410 146 DEAFDVAFTA 155 (209)
Q Consensus 146 ~~~fD~i~~~ 155 (209)
-.||.++++
T Consensus 122 -P~fd~cVsN 130 (315)
T KOG0820|consen 122 -PRFDGCVSN 130 (315)
T ss_pred -cccceeecc
Confidence 358998885
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00014 Score=57.68 Aligned_cols=87 Identities=18% Similarity=0.169 Sum_probs=65.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-c-CCceEEEecCCCCCC----------------cEEEcCCCCC------CCCCCcee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-I-GVADVTGVELMDSLP----------------LVSRADPHNL------PFFDEAFD 150 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~-~~~~v~~vD~s~~~~----------------~~~~~d~~~~------~~~~~~fD 150 (209)
.+..+.||+|.=||+.+..+|. . ..++|+++|+++... .++++++.+. ..+.++||
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 5788999999999999999887 3 357999999998733 3666665541 23578999
Q ss_pred eEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 151 ~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
++|..+-- -+-...+.++.+.+|+||.+++-
T Consensus 152 faFvDadK--~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 152 FAFVDADK--DNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEEccch--HHHHHHHHHHHhhcccccEEEEe
Confidence 99984210 02347789999999999997654
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.2e-05 Score=62.19 Aligned_cols=70 Identities=16% Similarity=0.119 Sum_probs=56.9
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-------------CcEEEcCCCCCCCCCC-cee
Q 028410 85 FKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------PLVSRADPHNLPFFDE-AFD 150 (209)
Q Consensus 85 ~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~-------------~~~~~~d~~~~~~~~~-~fD 150 (209)
+...++.....++..|||||+|.|.++..|++.+. .|+++|+++.+ ++++.+|+...++++. .++
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~ 97 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPY 97 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCC
Confidence 44455555778899999999999999999999865 89999999873 3488999999888654 678
Q ss_pred eEEcc
Q 028410 151 VAFTA 155 (209)
Q Consensus 151 ~i~~~ 155 (209)
.|+++
T Consensus 98 ~vVaN 102 (259)
T COG0030 98 KVVAN 102 (259)
T ss_pred EEEEc
Confidence 88885
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.85 E-value=3e-05 Score=66.25 Aligned_cols=100 Identities=12% Similarity=0.081 Sum_probs=61.0
Q ss_pred CeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------------EEEcCCCCCC--------C---C-----C
Q 028410 98 SKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------VSRADPHNLP--------F---F-----D 146 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------------~~~~d~~~~~--------~---~-----~ 146 (209)
.++||++||+|.++..+++.. .+|+|+|+++.+++ ++.+|+.++- + . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 479999999999999998864 59999999998553 6667765521 1 0 1
Q ss_pred CceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 147 EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 147 ~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
..||+|+..-- ...-..++++.+. +|++.+++.+.. ....+.+..+...+++
T Consensus 278 ~~~d~v~lDPP-R~G~~~~~l~~l~---~~~~ivYvsC~p--~tlaRDl~~L~~~Y~l 329 (353)
T TIGR02143 278 YNCSTIFVDPP-RAGLDPDTCKLVQ---AYERILYISCNP--ETLKANLEQLSETHRV 329 (353)
T ss_pred CCCCEEEECCC-CCCCcHHHHHHHH---cCCcEEEEEcCH--HHHHHHHHHHhcCcEE
Confidence 23798887421 1111234444443 377776655544 3344445544433443
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.2e-05 Score=58.70 Aligned_cols=94 Identities=19% Similarity=0.200 Sum_probs=67.4
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcccch
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
..-.+.+|||+|+|+|..+...+..|...|+..|+.+.... +...|. -..+..||+++...+.
T Consensus 76 etVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~---~g~~~~~Dl~LagDlf 152 (218)
T COG3897 76 ETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADL---IGSPPAFDLLLAGDLF 152 (218)
T ss_pred cccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccc---cCCCcceeEEEeecee
Confidence 34568999999999999999998888788888888765322 222222 2367899999998876
Q ss_pred hhh-CHHHHHHHHHHhcccCcEEEEEEecCCcc
Q 028410 159 EAL-FPSRFVGEMERTVKIGGVCMVLMEECAGR 190 (209)
Q Consensus 159 ~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~ 190 (209)
... .-.+++. +.+.|+..|..+++......+
T Consensus 153 y~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 153 YNHTEADRLIP-WKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred cCchHHHHHHH-HHHHHHhCCCEEEEeCCCCCC
Confidence 655 4455556 888888888877755444433
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.4e-05 Score=68.60 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=65.5
Q ss_pred CCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCCc---------------EEEcCCCCCC-CCCCceeeEEcccch
Q 028410 97 HSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPL---------------VSRADPHNLP-FFDEAFDVAFTAHLA 158 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~~---------------~~~~d~~~~~-~~~~~fD~i~~~~~~ 158 (209)
+.+|||..||+|..+...+.. |..+|+++|+++..++ +..+|+.++- .....||+|...-.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDPf- 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDPF- 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCCC-
Confidence 468999999999999999885 6679999999998543 4445544421 12357999988542
Q ss_pred hhhCHHHHHHHHHHhcccCcEEEEEEe
Q 028410 159 EALFPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 159 ~~~~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
-.+..++..+.+.+++||.+.+...
T Consensus 124 --Gs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 124 --GTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred --CCcHHHHHHHHHhcccCCEEEEEec
Confidence 2467899999999999999888743
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.3e-05 Score=58.37 Aligned_cols=48 Identities=21% Similarity=0.312 Sum_probs=42.0
Q ss_pred CCCCCCCCceeeEEcccchhhh---CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 140 HNLPFFDEAFDVAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 140 ~~~~~~~~~fD~i~~~~~~~~~---~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
...+|.+++.|+|.+.|+.+|+ ....++++++|.|||||++-+.+...
T Consensus 39 ~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 39 NESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred hhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 3467999999999999999999 44788999999999999998888764
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.73 E-value=6.2e-05 Score=64.54 Aligned_cols=96 Identities=11% Similarity=0.120 Sum_probs=59.6
Q ss_pred CCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------------EEEcCCCCC-C-CC--------------
Q 028410 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------VSRADPHNL-P-FF-------------- 145 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------------~~~~d~~~~-~-~~-------------- 145 (209)
+.++||++||+|.++..+++. ..+|+|+|.++.+++ ++.+|+.+. + +.
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 357999999999999988886 359999999998553 667776552 1 10
Q ss_pred CCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHh
Q 028410 146 DEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELF 199 (209)
Q Consensus 146 ~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~ 199 (209)
..+||+|+..-= ..--..++++.+.+ |++.+++.+.. ....+.+..+.
T Consensus 286 ~~~~D~v~lDPP-R~G~~~~~l~~l~~---~~~ivyvSC~p--~tlarDl~~L~ 333 (362)
T PRK05031 286 SYNFSTIFVDPP-RAGLDDETLKLVQA---YERILYISCNP--ETLCENLETLS 333 (362)
T ss_pred CCCCCEEEECCC-CCCCcHHHHHHHHc---cCCEEEEEeCH--HHHHHHHHHHc
Confidence 225899988421 11112444444443 67766555554 33344444443
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0004 Score=51.44 Aligned_cols=52 Identities=19% Similarity=0.145 Sum_probs=38.8
Q ss_pred HHHHHHHHHhc-ccCCCCCeEEEEcCCCChhHHHHHh-----cCCceEEEecCCCCCC
Q 028410 81 YAHFFKHLQGK-SLLFNHSKVLCVSAGAGHEVMAFNS-----IGVADVTGVELMDSLP 132 (209)
Q Consensus 81 ~~~~~~~l~~~-~~~~~~~~iLDiGcG~G~~~~~la~-----~~~~~v~~vD~s~~~~ 132 (209)
...++..+... ....+...|+|+|||.|+++..++. ....+|+++|.++..+
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~ 66 (141)
T PF13679_consen 9 MAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLV 66 (141)
T ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHH
Confidence 34444443322 3447889999999999999999998 4445999999998854
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00024 Score=56.75 Aligned_cols=115 Identities=18% Similarity=0.146 Sum_probs=77.9
Q ss_pred hhHhhHhHHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCC-------------CcEEE
Q 028410 72 KSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL-------------PLVSR 136 (209)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~-------------~~~~~ 136 (209)
+-|......+..-+---++..+++++.+||-+|+++|+..-++++. +.+-|++++.|... +--+.
T Consensus 132 RVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIi 211 (317)
T KOG1596|consen 132 RVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPII 211 (317)
T ss_pred EEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeee
Confidence 3365555555544444445567899999999999999999999994 56789999999761 11334
Q ss_pred cCCCCCC---CCCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 137 ADPHNLP---FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 137 ~d~~~~~---~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
.|+.... ..-.-.|+||+. +.+.-...-+.-+..-.||+||.+++.....
T Consensus 212 EDArhP~KYRmlVgmVDvIFaD-vaqpdq~RivaLNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 212 EDARHPAKYRMLVGMVDVIFAD-VAQPDQARIVALNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred ccCCCchheeeeeeeEEEEecc-CCCchhhhhhhhhhhhhhccCCeEEEEEecc
Confidence 4544321 223578888873 3322223445567888999999999987664
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.66 E-value=2.6e-05 Score=64.57 Aligned_cols=105 Identities=17% Similarity=0.211 Sum_probs=73.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCCc---------------EEEcCCCCC-C-CCCCceeeEE
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPL---------------VSRADPHNL-P-FFDEAFDVAF 153 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~~---------------~~~~d~~~~-~-~~~~~fD~i~ 153 (209)
...++..|||+++++|.-+.++++. +.+.+++.|+++..+. ....|.... + .....||.|+
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vl 161 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVL 161 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhh
Confidence 4478899999999999999999983 4689999999988332 333444443 1 2334699999
Q ss_pred cc----c--chh-------h--------h--CHHHHHHHHHHhc----ccCcEEEEEEecCCcccHHHHHH
Q 028410 154 TA----H--LAE-------A--------L--FPSRFVGEMERTV----KIGGVCMVLMEECAGREIKQIVE 197 (209)
Q Consensus 154 ~~----~--~~~-------~--------~--~~~~~l~~~~r~L----kpgG~lil~~~~~~~~~~~~~~~ 197 (209)
.. . +.. . + -..+++....+.+ ||||+++.++.+....+.....+
T Consensus 162 vDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~ 232 (283)
T PF01189_consen 162 VDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVE 232 (283)
T ss_dssp EECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHH
T ss_pred cCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHH
Confidence 73 1 000 0 0 1267889999999 99999999988765444444444
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00026 Score=65.79 Aligned_cols=93 Identities=10% Similarity=0.038 Sum_probs=64.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc------C-------------------------------------CceEEEecCCCCC
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI------G-------------------------------------VADVTGVELMDSL 131 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~------~-------------------------------------~~~v~~vD~s~~~ 131 (209)
+++..++|-+||+|.+..+.+.. | ..+++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 56899999999999999887641 0 1269999999884
Q ss_pred C----------------cEEEcCCCCCCCC--CCceeeEEccc--chhh---hCHHHHHHHHHHhc---ccCcEEEEEEe
Q 028410 132 P----------------LVSRADPHNLPFF--DEAFDVAFTAH--LAEA---LFPSRFVGEMERTV---KIGGVCMVLME 185 (209)
Q Consensus 132 ~----------------~~~~~d~~~~~~~--~~~fD~i~~~~--~~~~---~~~~~~l~~~~r~L---kpgG~lil~~~ 185 (209)
+ .+.++|+.+++.+ .++||+|+++- .... .+...+..++.+.+ .+|+.+++.+.
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 4 3778899887654 35799999982 1111 12344444444444 48999888877
Q ss_pred cC
Q 028410 186 EC 187 (209)
Q Consensus 186 ~~ 187 (209)
..
T Consensus 349 ~~ 350 (702)
T PRK11783 349 SP 350 (702)
T ss_pred CH
Confidence 53
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00011 Score=56.56 Aligned_cols=82 Identities=17% Similarity=0.137 Sum_probs=64.9
Q ss_pred CCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC---------------CCcEEEcCCCCCCCCCCceeeEEcccchhhh
Q 028410 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~ 161 (209)
...+.|+|+|+|.++...++. ..+|++++.+|. .++++.+|+.+..| +..|+|+|--+...+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHh
Confidence 378999999999999988887 459999999987 33488999999888 678999996554444
Q ss_pred ---CHHHHHHHHHHhcccCcEEE
Q 028410 162 ---FPSRFVGEMERTVKIGGVCM 181 (209)
Q Consensus 162 ---~~~~~l~~~~r~LkpgG~li 181 (209)
.....+..+.+.||-++.++
T Consensus 110 i~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 110 IEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hcccccHHHHHHHHHhhcCCccc
Confidence 23667778888888888753
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00047 Score=57.95 Aligned_cols=87 Identities=11% Similarity=0.088 Sum_probs=66.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-----------CcEEEcCCCCCCCCCCceeeEEcccchhhh--
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-----------PLVSRADPHNLPFFDEAFDVAFTAHLAEAL-- 161 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~-----------~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-- 161 (209)
+.-...+|+|.|.|..+..+... +-.|-++++.... ++.+-+|..+- .|. -|+|++-++.++.
T Consensus 176 ~~v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwtD 251 (342)
T KOG3178|consen 176 KGVNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPK--GDAIWMKWILHDWTD 251 (342)
T ss_pred ccCceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhcCCcceeccccccc-CCC--cCeEEEEeecccCCh
Confidence 44689999999999999998873 3357777776541 34455555543 333 3599999988888
Q ss_pred -CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 162 -FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 162 -~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+-.++|+++++.|+|||.+++...
T Consensus 252 edcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 252 EDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEec
Confidence 348899999999999999998876
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00039 Score=54.74 Aligned_cols=93 Identities=16% Similarity=0.065 Sum_probs=69.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCC--CCCCCCceeeEEcccch
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHN--LPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~--~~~~~~~fD~i~~~~~~ 158 (209)
.++.+||+||=|-|.....+.+.+..+=+-++..+.... .+.+-.++ ..++|+.||-|+-....
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 789999999999999988888754445566787776332 33444444 23678899999886554
Q ss_pred hhh-CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 159 EAL-FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 159 ~~~-~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
++- +...+.+.+.|+|||+|++-.+..-+
T Consensus 180 e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 180 ELYEDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred hHHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 444 78889999999999999976665444
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00018 Score=55.59 Aligned_cols=92 Identities=24% Similarity=0.144 Sum_probs=64.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc----------------EEEcCCCCC--CCCC-CceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------VSRADPHNL--PFFD-EAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------------~~~~d~~~~--~~~~-~~fD~i~~~ 155 (209)
-++.++||+-+|||..+.+...+|...++.||.+..... ++..|+... .... +.||+|+..
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 578999999999999999999998889999999987442 555665532 1222 259999996
Q ss_pred cchh-hh-CHHHHHHH--HHHhcccCcEEEEEEec
Q 028410 156 HLAE-AL-FPSRFVGE--MERTVKIGGVCMVLMEE 186 (209)
Q Consensus 156 ~~~~-~~-~~~~~l~~--~~r~LkpgG~lil~~~~ 186 (209)
--+. .+ +....+.. -...|+|||.+++-...
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 3222 12 33444444 45779999987665543
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00048 Score=59.14 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=76.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHh--cCCceEEEecCCCCCCc---------------EEEcCCCCCC---CCCCceeeEEc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS--IGVADVTGVELMDSLPL---------------VSRADPHNLP---FFDEAFDVAFT 154 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~--~~~~~v~~vD~s~~~~~---------------~~~~d~~~~~---~~~~~fD~i~~ 154 (209)
+++.+|||+++-+|.-+.++|. .+.+.|++.|.+...+. +...|...+| ++. +||-|+.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLL 318 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLL 318 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeee
Confidence 8899999999999999999888 35689999998887443 3444444443 334 8999986
Q ss_pred c----c------------------chhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHH-Hhccc
Q 028410 155 A----H------------------LAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVE-LFRTS 202 (209)
Q Consensus 155 ~----~------------------~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~-l~~~~ 202 (209)
. . +..+. -..+++......+|+||+++.++.+..-.+.....+ +++++
T Consensus 319 DAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~ 390 (460)
T KOG1122|consen 319 DAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKR 390 (460)
T ss_pred cCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhC
Confidence 3 1 11111 137788889999999999999988876555555444 55555
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00049 Score=57.88 Aligned_cols=93 Identities=9% Similarity=0.019 Sum_probs=62.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-c----CCceEEEecCCCCCCc-----------------EEEcCCCC----CCC--CC
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-I----GVADVTGVELMDSLPL-----------------VSRADPHN----LPF--FD 146 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~----~~~~v~~vD~s~~~~~-----------------~~~~d~~~----~~~--~~ 146 (209)
.++..++|+|||+|.-+..|.+ . ....++++|+|...++ -+.+|..+ ++- ..
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 6778999999999998776654 1 1247999999986442 24566544 211 12
Q ss_pred CceeeEEcc-cchhhhCH---HHHHHHHHH-hcccCcEEEEEEecC
Q 028410 147 EAFDVAFTA-HLAEALFP---SRFVGEMER-TVKIGGVCMVLMEEC 187 (209)
Q Consensus 147 ~~fD~i~~~-~~~~~~~~---~~~l~~~~r-~LkpgG~lil~~~~~ 187 (209)
....+++.- .....+++ ..+++++++ .|+|||.+++.+...
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 335566553 23333333 678899999 999999988877553
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00046 Score=53.49 Aligned_cols=91 Identities=18% Similarity=0.082 Sum_probs=61.5
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC---------------------cEEEcCCCCCCCCCCce
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP---------------------LVSRADPHNLPFFDEAF 149 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~---------------------~~~~~d~~~~~~~~~~f 149 (209)
.++++++|+|+=.|.|+++.-++.. +.+.|++.-+.+... +.+-.+...++ +.+..
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~ 123 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKL 123 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcc
Confidence 4599999999999999999999984 456888875554411 11222222233 45667
Q ss_pred eeEEcccch--------hhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 150 DVAFTAHLA--------EALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 150 D~i~~~~~~--------~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
|+++.+... +.-...++..++++.|||||.+++..
T Consensus 124 d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 124 DLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred cccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 777663211 11134889999999999999976664
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00024 Score=58.81 Aligned_cols=111 Identities=18% Similarity=0.282 Sum_probs=70.1
Q ss_pred cCchhHhhHhHHHHHHHHHHHhccc----CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-----------
Q 028410 69 WSSKSWKQQVTSYAHFFKHLQGKSL----LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------- 133 (209)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------- 133 (209)
|.+..-+.+......+++.+..+-. .+...+||--|||.|+++..++..|. ++-|-++|--|+-
T Consensus 119 wssE~~~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~ 197 (369)
T KOG2798|consen 119 WSSEGQRERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQ 197 (369)
T ss_pred hhhccchhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhcc
Confidence 4443333344445555555543222 25578999999999999999999876 6666555543221
Q ss_pred --------------------------------------------EEEcCCCCC-C--CCCCceeeEEcccchhhh-CHHH
Q 028410 134 --------------------------------------------VSRADPHNL-P--FFDEAFDVAFTAHLAEAL-FPSR 165 (209)
Q Consensus 134 --------------------------------------------~~~~d~~~~-~--~~~~~fD~i~~~~~~~~~-~~~~ 165 (209)
...||+.+. + -..++||+|+.+.+.... +..+
T Consensus 198 ~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~Nile 277 (369)
T KOG2798|consen 198 ENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILE 277 (369)
T ss_pred CCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHH
Confidence 011222221 1 112479999887655544 7889
Q ss_pred HHHHHHHhcccCcEE
Q 028410 166 FVGEMERTVKIGGVC 180 (209)
Q Consensus 166 ~l~~~~r~LkpgG~l 180 (209)
.+..+..+|||||+-
T Consensus 278 Yi~tI~~iLk~GGvW 292 (369)
T KOG2798|consen 278 YIDTIYKILKPGGVW 292 (369)
T ss_pred HHHHHHHhccCCcEE
Confidence 999999999999974
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00049 Score=54.63 Aligned_cols=90 Identities=17% Similarity=0.150 Sum_probs=65.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc--C----C----ceEEEecCCCCCC----cEEEcCCCCCC--------CCCCceeeE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI--G----V----ADVTGVELMDSLP----LVSRADPHNLP--------FFDEAFDVA 152 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~--~----~----~~v~~vD~s~~~~----~~~~~d~~~~~--------~~~~~fD~i 152 (209)
+.-.+++|+++.+|.+++.+++. . . ..|++||+.+... --+++|++... |..++.|+|
T Consensus 40 ~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlV 119 (294)
T KOG1099|consen 40 EGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLV 119 (294)
T ss_pred hhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEE
Confidence 66789999999999999999872 1 1 1399999988743 26789998753 667799999
Q ss_pred Eccc---------chhhhC---HHHHHHHHHHhcccCcEEEEEE
Q 028410 153 FTAH---------LAEALF---PSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 153 ~~~~---------~~~~~~---~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+|.. +.+++. ....+.-...+|||||.++-=.
T Consensus 120 vcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 120 VCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred EeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 9962 233331 2445566678999999965443
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=7.7e-05 Score=56.07 Aligned_cols=108 Identities=12% Similarity=0.159 Sum_probs=72.2
Q ss_pred CCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCc----EEEcC--------------C--CCCCCCCCceeeEE
Q 028410 96 NHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPL----VSRAD--------------P--HNLPFFDEAFDVAF 153 (209)
Q Consensus 96 ~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~----~~~~d--------------~--~~~~~~~~~fD~i~ 153 (209)
.+.+||++|.| +|..+..+|. .+...|...|-+++.+. .+..+ . ........+||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 35789999998 4555555555 35568999998887543 11111 0 01112346999999
Q ss_pred cccchhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 154 TAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 154 ~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+......- ....++.-+++.|+|.|.. +.+......+.+.|.+..+..+|
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~p~g~A-l~fsPRRg~sL~kF~de~~~~gf 159 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLRPSGRA-LLFSPRRGQSLQKFLDEVGTVGF 159 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhCcccce-eEecCcccchHHHHHHHHHhcee
Confidence 97643323 4577889999999999994 44444456788888888777776
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00058 Score=61.38 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=67.1
Q ss_pred CCCeEEEEcCCCChhHHHHHhc-C--------CceEEEecCCCCCCc---------------EEEcCCCCCC-----CCC
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSI-G--------VADVTGVELMDSLPL---------------VSRADPHNLP-----FFD 146 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~-~--------~~~v~~vD~s~~~~~---------------~~~~d~~~~~-----~~~ 146 (209)
.+.+|||.|||+|.+...++.. . ..+++|+|+++..+. +...|..... -..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 5679999999999999988762 1 147899999887442 2222221111 112
Q ss_pred CceeeEEcc--cchhhh----------------------------------C-----------HHHHH-HHHHHhcccCc
Q 028410 147 EAFDVAFTA--HLAEAL----------------------------------F-----------PSRFV-GEMERTVKIGG 178 (209)
Q Consensus 147 ~~fD~i~~~--~~~~~~----------------------------------~-----------~~~~l-~~~~r~LkpgG 178 (209)
+.||+|+++ +.-... + ...++ +...+.|+|||
T Consensus 111 ~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G 190 (524)
T TIGR02987 111 DLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNG 190 (524)
T ss_pred CcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCC
Confidence 579999997 111000 0 01134 45789999999
Q ss_pred EEEEEEecC--CcccHHHHHH-Hhccccc
Q 028410 179 VCMVLMEEC--AGREIKQIVE-LFRTSSF 204 (209)
Q Consensus 179 ~lil~~~~~--~~~~~~~~~~-l~~~~~~ 204 (209)
++.++++.. .......+.+ +++...+
T Consensus 191 ~~~~I~P~s~l~~~~~~~lR~~ll~~~~i 219 (524)
T TIGR02987 191 YVSIISPASWLGDKTGENLREYIFNNRLI 219 (524)
T ss_pred EEEEEEChHHhcCccHHHHHHHHHhCCee
Confidence 999998774 3344555655 4454444
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00058 Score=55.93 Aligned_cols=82 Identities=20% Similarity=0.200 Sum_probs=58.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-------------CcEEEcCCCCCCCCC---CceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------PLVSRADPHNLPFFD---EAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~-------------~~~~~~d~~~~~~~~---~~fD~i~~~~ 156 (209)
.+.++..|+|+|+|+|.++..+.+.+ .+++++|+++.. ++++.+|+.++...+ +....|+++
T Consensus 27 ~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~N- 104 (262)
T PF00398_consen 27 DLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQPLLVVGN- 104 (262)
T ss_dssp TCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEEEEEEE-
T ss_pred CCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCceEEEEE-
Confidence 55689999999999999999999987 699999999872 348899999887654 345555553
Q ss_pred chhhhCHHHHHHHHHHhcccC
Q 028410 157 LAEALFPSRFVGEMERTVKIG 177 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~Lkpg 177 (209)
+.... ...++..+...-+.|
T Consensus 105 lPy~i-s~~il~~ll~~~~~g 124 (262)
T PF00398_consen 105 LPYNI-SSPILRKLLELYRFG 124 (262)
T ss_dssp ETGTG-HHHHHHHHHHHGGGC
T ss_pred ecccc-hHHHHHHHhhccccc
Confidence 43323 345666666644443
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.15 E-value=9.5e-05 Score=51.81 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=35.5
Q ss_pred EEEcCCCChhHHHHHhc--CC--ceEEEecCCCC---C------------CcEEEcCCCCC--CCCCCceeeEEcccchh
Q 028410 101 LCVSAGAGHEVMAFNSI--GV--ADVTGVELMDS---L------------PLVSRADPHNL--PFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 101 LDiGcG~G~~~~~la~~--~~--~~v~~vD~s~~---~------------~~~~~~d~~~~--~~~~~~fD~i~~~~~~~ 159 (209)
||+|+..|..+..+++. .. .+++++|..+. . +.++.++..+. .++.+++|+++...-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 68999999999888872 22 37999999983 1 22455555431 13357899998853222
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEE
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
.-.....+..+.+.|+|||.+++.
T Consensus 81 ~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 81 YEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEe
Confidence 224566788899999999987653
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00074 Score=51.27 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=39.0
Q ss_pred eEEEEcCCCChhHHHHHhcCCceEEEecCCCC----------------CCcEEEcCCCCCC--CCCCc-eeeEEcc
Q 028410 99 KVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLP--FFDEA-FDVAFTA 155 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~----------------~~~~~~~d~~~~~--~~~~~-fD~i~~~ 155 (209)
.|+|..||.|..+.++|+.. .+|+++|+++. .++++.+|..+.. +..+. +|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 69999999999999999984 59999999988 3358899987742 22222 8999985
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0028 Score=54.19 Aligned_cols=101 Identities=15% Similarity=0.084 Sum_probs=69.9
Q ss_pred HHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCC---------------------------------c-------eEEEe
Q 028410 86 KHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGV---------------------------------A-------DVTGV 125 (209)
Q Consensus 86 ~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~---------------------------------~-------~v~~v 125 (209)
..++.+....++..++|--||+|.+.++.|..+. . .++|+
T Consensus 181 aAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~ 260 (381)
T COG0116 181 AAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGS 260 (381)
T ss_pred HHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEe
Confidence 3344455678888999999999999999877431 1 37799
Q ss_pred cCCCCCC----------------cEEEcCCCCCCCCCCceeeEEccc-----chhhhCH----HHHHHHHHHhcccCcEE
Q 028410 126 ELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAH-----LAEALFP----SRFVGEMERTVKIGGVC 180 (209)
Q Consensus 126 D~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~-----~~~~~~~----~~~l~~~~r~LkpgG~l 180 (209)
|+++.++ +|.++|+.+++-+-+.+|+|+|+- +..+-.. ..+.+.+++.++.-+..
T Consensus 261 Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~ 340 (381)
T COG0116 261 DIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRY 340 (381)
T ss_pred cCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceE
Confidence 9999855 389999999875448999999982 2221112 33444555666666776
Q ss_pred EEEEec
Q 028410 181 MVLMEE 186 (209)
Q Consensus 181 il~~~~ 186 (209)
+++..+
T Consensus 341 v~tt~e 346 (381)
T COG0116 341 VFTTSE 346 (381)
T ss_pred EEEccH
Confidence 666554
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.002 Score=56.41 Aligned_cols=91 Identities=16% Similarity=0.094 Sum_probs=59.9
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------------EEEcCCCCCCCC---CCceeeEEc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------VSRADPHNLPFF---DEAFDVAFT 154 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------------~~~~d~~~~~~~---~~~fD~i~~ 154 (209)
...++.++||+=||.|.++..+|+.. .+|+|+|+++.+++ ++.++.++.... ...+|.|+.
T Consensus 290 ~~~~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 290 ELAGGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hhcCCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 34677899999999999999999764 59999999998553 677777775432 357899987
Q ss_pred ccchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.-- ...-..++++.+ ..++|-..++++++.
T Consensus 369 DPP-R~G~~~~~lk~l-~~~~p~~IvYVSCNP 398 (432)
T COG2265 369 DPP-RAGADREVLKQL-AKLKPKRIVYVSCNP 398 (432)
T ss_pred CCC-CCCCCHHHHHHH-HhcCCCcEEEEeCCH
Confidence 310 000012333333 345666665555543
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0053 Score=46.26 Aligned_cols=91 Identities=18% Similarity=0.123 Sum_probs=58.1
Q ss_pred CCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcEE-EcCCCCC---------CCCCCceeeEEcccchhhh-----
Q 028410 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVS-RADPHNL---------PFFDEAFDVAFTAHLAEAL----- 161 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~~-~~d~~~~---------~~~~~~fD~i~~~~~~~~~----- 161 (209)
+.+++-+|+..-..-....+.|..+|..+|.++-.++-. +-.+..+ .--.++||++.|.+..+|.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh~GLGRY 81 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSSILPVDFAKNWQKYAGSFDFAASFSSIEHFGLGRY 81 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccccccHHHHHHHHHHhhccchhhheechhcccccccc
Confidence 567777877744333333346777899999876433311 1111111 1124789999886544433
Q ss_pred -CH------HHHHHHHHHhcccCcEEEEEEecC
Q 028410 162 -FP------SRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 162 -~~------~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
|| .+.+.++.++|||||.+++.++..
T Consensus 82 GDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 82 GDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred CCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 22 778899999999999999998764
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0028 Score=50.02 Aligned_cols=99 Identities=12% Similarity=0.072 Sum_probs=61.4
Q ss_pred EEEEcCCCChhHHHHHhcCC-ceEEEecCCCCCC----------------cEEEcCCCC-CCCCCCceeeEEcccchhhh
Q 028410 100 VLCVSAGAGHEVMAFNSIGV-ADVTGVELMDSLP----------------LVSRADPHN-LPFFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 100 iLDiGcG~G~~~~~la~~~~-~~v~~vD~s~~~~----------------~~~~~d~~~-~~~~~~~fD~i~~~~~~~~~ 161 (209)
|.||||-.|+.+.+|.+.+. ..++++|+++.++ ++..+|... ++ +.+..|.|+.+.+-..+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-CCCCCCEEEEecCCHHH
Confidence 68999999999999999754 4799999999844 366777443 32 22337888887665533
Q ss_pred CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 162 FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 162 ~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
..+++.+....++....+++.-. .....++..+...+|
T Consensus 80 -I~~ILe~~~~~~~~~~~lILqP~----~~~~~LR~~L~~~gf 117 (205)
T PF04816_consen 80 -IIEILEAGPEKLSSAKRLILQPN----THAYELRRWLYENGF 117 (205)
T ss_dssp -HHHHHHHTGGGGTT--EEEEEES----S-HHHHHHHHHHTTE
T ss_pred -HHHHHHhhHHHhccCCeEEEeCC----CChHHHHHHHHHCCC
Confidence 45666666666666566555433 356667777776666
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0026 Score=54.36 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=27.9
Q ss_pred eEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC
Q 028410 99 KVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP 132 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~ 132 (209)
.+||+-||.|.++..+|+.. .+|+|+|.++.++
T Consensus 199 ~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av 231 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAV 231 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHH
T ss_pred cEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHH
Confidence 89999999999999999974 5999999998754
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0068 Score=49.07 Aligned_cols=101 Identities=15% Similarity=0.078 Sum_probs=64.1
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------------E---EEcCCCCCCCCCCc-eee
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------------V---SRADPHNLPFFDEA-FDV 151 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------------~---~~~d~~~~~~~~~~-fD~ 151 (209)
...+||++|+|+|..+...+.....+|...|+-..... + .-++..+..+-... ||+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 56789999999998888877754558888886554211 1 11112221121223 999
Q ss_pred EEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHH
Q 028410 152 AFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVE 197 (209)
Q Consensus 152 i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~ 197 (209)
|+++.+.... .+..++.-+...|-.+|.+ +......+....+...
T Consensus 166 ilasDvvy~~~~~e~Lv~tla~ll~~~~~i-~l~~~lr~~~~~~~~~ 211 (248)
T KOG2793|consen 166 ILASDVVYEEESFEGLVKTLAFLLAKDGTI-FLAYPLRRDAAWEIEV 211 (248)
T ss_pred EEEeeeeecCCcchhHHHHHHHHHhcCCeE-EEEEecccchHHHHHH
Confidence 9998766655 7788889999999999944 4444444433333333
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0064 Score=50.09 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=51.8
Q ss_pred CCeEEEEcCCCChhH-HHHHh-cC-CceEEEecCCCCCC-----------------cEEEcCCCCCCCCCCceeeEEccc
Q 028410 97 HSKVLCVSAGAGHEV-MAFNS-IG-VADVTGVELMDSLP-----------------LVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~-~~la~-~~-~~~v~~vD~s~~~~-----------------~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
+.+|+=||||+=.++ ..+++ .+ ...++++|+++.++ .++.+|..+.+..-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 469999999966544 44554 33 34799999999844 377888877765557899998865
Q ss_pred chhhh--CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 157 LAEAL--FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 157 ~~~~~--~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+...- +..+++.++.+.++||.. ++++.
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~--l~~Rs 230 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGAR--LVVRS 230 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSE--EEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcE--EEEec
Confidence 44322 679999999999999998 44443
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.012 Score=49.18 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=33.9
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP 132 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~ 132 (209)
..+++..++|.=+|.|..+..+++ .+.++|+|+|.++.++
T Consensus 17 ~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al 57 (305)
T TIGR00006 17 NIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAI 57 (305)
T ss_pred CcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHH
Confidence 457888999999999999999988 3458999999998733
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.012 Score=48.19 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=59.8
Q ss_pred CCCeEEEEcCCCC--hhHHHHHh--cCCceEEEecCCCCC---------------CcEEEcCCCCCC-----------C-
Q 028410 96 NHSKVLCVSAGAG--HEVMAFNS--IGVADVTGVELMDSL---------------PLVSRADPHNLP-----------F- 144 (209)
Q Consensus 96 ~~~~iLDiGcG~G--~~~~~la~--~~~~~v~~vD~s~~~---------------~~~~~~d~~~~~-----------~- 144 (209)
.-...||+|||-- ....++++ .+..+|+-+|.+|.. ..++++|+.+.. +
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 3468999999943 45566666 466799999998862 238889987732 1
Q ss_pred CCCceeeEEcccchhhh----CHHHHHHHHHHhcccCcEEEEEEecCCcc--cHHHHHHHhccc
Q 028410 145 FDEAFDVAFTAHLAEAL----FPSRFVGEMERTVKIGGVCMVLMEECAGR--EIKQIVELFRTS 202 (209)
Q Consensus 145 ~~~~fD~i~~~~~~~~~----~~~~~l~~~~r~LkpgG~lil~~~~~~~~--~~~~~~~l~~~~ 202 (209)
.++..-+++. .+.+++ ++..++..+...|-||.++++.....+.. ....+.+.+.+.
T Consensus 148 ~~rPVavll~-~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~ 210 (267)
T PF04672_consen 148 FDRPVAVLLV-AVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQA 210 (267)
T ss_dssp TTS--EEEEC-T-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHC
T ss_pred CCCCeeeeee-eeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcC
Confidence 1334444443 444444 68999999999999999999998776432 224455555544
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0024 Score=53.15 Aligned_cols=40 Identities=10% Similarity=0.012 Sum_probs=34.5
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCCC
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSLP 132 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~~ 132 (209)
...++..++|.+||.|..+..+++. + .++|+|+|.++.++
T Consensus 16 ~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al 57 (296)
T PRK00050 16 AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAI 57 (296)
T ss_pred CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHH
Confidence 4478889999999999999999985 3 57999999999754
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0066 Score=47.51 Aligned_cols=106 Identities=16% Similarity=0.237 Sum_probs=62.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc----------------------EEEcCCCC-CC--CCCCc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL----------------------VSRADPHN-LP--FFDEA 148 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~----------------------~~~~d~~~-~~--~~~~~ 148 (209)
+....+.|||||-|.+...++. .+...+.|.+|-.+..+ +...+... +| |..++
T Consensus 59 ~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgq 138 (249)
T KOG3115|consen 59 NKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQ 138 (249)
T ss_pred cccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcc
Confidence 5678899999999999999998 57778999988665222 22222221 11 11111
Q ss_pred eeeEEcccchhhh---------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccc
Q 028410 149 FDVAFTAHLAEAL---------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTS 202 (209)
Q Consensus 149 fD~i~~~~~~~~~---------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~ 202 (209)
..=.+...-.-|. --..++.+..-+|++||.++.++... ....+..+.|...
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~--elh~wm~~~~e~h 199 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK--ELHEWMVKHLEEH 199 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH--HHHHHHHHHHHhC
Confidence 1111110000011 12567888999999999988887663 2344444444433
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0034 Score=51.42 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=59.8
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcEEEcCCCCC-------------------------CC-C
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADPHNL-------------------------PF-F 145 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~~~~d~~~~-------------------------~~-~ 145 (209)
+....+.+|||+|||+|..+......+...+...|.|.+.+..+..+.... -+ .
T Consensus 112 ~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~ 191 (282)
T KOG2920|consen 112 QMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNH 191 (282)
T ss_pred heEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhh
Confidence 456788999999999999999888877568888898888664221111110 00 0
Q ss_pred CC--ceeeEEcccchhhhC-HHHH-HHHHHHhcccCcEEEEEEec
Q 028410 146 DE--AFDVAFTAHLAEALF-PSRF-VGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 146 ~~--~fD~i~~~~~~~~~~-~~~~-l~~~~r~LkpgG~lil~~~~ 186 (209)
.+ .||+|.++-.....+ .+.+ .......++++|.++++...
T Consensus 192 t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK~ 236 (282)
T KOG2920|consen 192 TERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAAKK 236 (282)
T ss_pred ccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhhHh
Confidence 12 567776654444332 2333 45566777889987665443
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.057 Score=42.57 Aligned_cols=87 Identities=10% Similarity=0.063 Sum_probs=49.6
Q ss_pred CCCeEEEEcCCCChhHHHHHh----c-CCceEEEecCCCC--------------CCcEEEcCCCCCC----C----CCCc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS----I-GVADVTGVELMDS--------------LPLVSRADPHNLP----F----FDEA 148 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~----~-~~~~v~~vD~s~~--------------~~~~~~~d~~~~~----~----~~~~ 148 (209)
++..|+|+|.-.|..+...|. . +.++|+|+|++.. .+.+++||..+.. . ....
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 578999999999988887765 2 5679999999422 4458888887642 1 1233
Q ss_pred eeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEE
Q 028410 149 FDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 149 fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~ 183 (209)
..+|+.. ..|.. +..+.|+.....++||+++++-
T Consensus 112 ~vlVilD-s~H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 112 PVLVILD-SSHTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp SEEEEES-S----SSHHHHHHHHHHT--TT-EEEET
T ss_pred ceEEEEC-CCccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 4455543 22222 5677788899999999996654
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0071 Score=53.35 Aligned_cols=41 Identities=27% Similarity=0.229 Sum_probs=35.7
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL 133 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~ 133 (209)
..+..+..++|+.||||.++..+++. .+.|+|+++++..++
T Consensus 379 ~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~ 419 (534)
T KOG2187|consen 379 AGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVE 419 (534)
T ss_pred hCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcc
Confidence 35678899999999999999999885 569999999998664
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.029 Score=47.68 Aligned_cols=102 Identities=17% Similarity=0.090 Sum_probs=68.0
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc---C--CceEEEecCCCCCCc---------------EEEcCCCCC---------C
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI---G--VADVTGVELMDSLPL---------------VSRADPHNL---------P 143 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~---~--~~~v~~vD~s~~~~~---------------~~~~d~~~~---------~ 143 (209)
.++++.+|||+++-+|.-+..+.+. + .+.|++-|.++.-.. +...|+... +
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence 3499999999999999999888772 2 247899898877221 222222222 1
Q ss_pred CCCCceeeEEcc-------------cchhh-------h----CHHHHHHHHHHhcccCcEEEEEEecCCcccHHH
Q 028410 144 FFDEAFDVAFTA-------------HLAEA-------L----FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQ 194 (209)
Q Consensus 144 ~~~~~fD~i~~~-------------~~~~~-------~----~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~ 194 (209)
.....||-|++. ++... . -...++..-.+.||+||.++..+.+.+..+...
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEa 306 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEA 306 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHH
Confidence 234579999874 11111 0 125678889999999999999988876554444
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0061 Score=44.71 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=29.5
Q ss_pred eEEEEcCCCChhHHHHHhcC-CceEEEecCCCCCCc
Q 028410 99 KVLCVSAGAGHEVMAFNSIG-VADVTGVELMDSLPL 133 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~la~~~-~~~v~~vD~s~~~~~ 133 (209)
.++|+|||.|..+..+++.+ ..+++++|+++.+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~ 36 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYE 36 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHH
Confidence 48999999999999998853 348999999998554
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.027 Score=47.69 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=60.4
Q ss_pred ccCCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCc---------EEEcC-CCCCCCCCCceeeEEcccchh
Q 028410 92 SLLFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPL---------VSRAD-PHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~~d-~~~~~~~~~~fD~i~~~~~~~ 159 (209)
...+++.+|+=+|+| .|..+..+++ .| .+|+++|.+++..+ ++... ....+--.+.||+|+..-.
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-- 238 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-- 238 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC--
Confidence 355889999999888 3467777787 67 69999999998443 33332 1111111234999987322
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
...+....+.||+||.++++-..
T Consensus 239 ----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 ----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ----hhhHHHHHHHHhcCCEEEEECCC
Confidence 45678889999999998777444
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.017 Score=48.87 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=55.0
Q ss_pred CCCeEEEEcCCCChhHHHHHh-cC-CceEEEecCCCC---------------CCcEEEcCCCC--CCCC-CCceeeEEcc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS-IG-VADVTGVELMDS---------------LPLVSRADPHN--LPFF-DEAFDVAFTA 155 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~-~~-~~~v~~vD~s~~---------------~~~~~~~d~~~--~~~~-~~~fD~i~~~ 155 (209)
...+|||+|.|+|.-..++.. +| -.+++-++.|+. +..+-.+|+.. ++++ ...+++++..
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 356799999999988776665 33 134555555543 22233333322 3332 3456666553
Q ss_pred c-chhhh---CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 156 H-LAEAL---FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 156 ~-~~~~~---~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
+ +.+.- .....++.+...+.|||.++++.+..
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 2 22211 12458899999999999998887764
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.0081 Score=42.35 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=26.9
Q ss_pred ceeeEEcccchhhh-----C--HHHHHHHHHHhcccCcEEEEEE
Q 028410 148 AFDVAFTAHLAEAL-----F--PSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 148 ~fD~i~~~~~~~~~-----~--~~~~l~~~~r~LkpgG~lil~~ 184 (209)
.||+|+|..+..++ | ...+++.+++.|+|||.+++--
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 48999997553322 2 3779999999999999987754
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.069 Score=44.04 Aligned_cols=104 Identities=15% Similarity=0.158 Sum_probs=66.9
Q ss_pred eEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------EEEcCCCCCCCC--CCceeeEEccc------ch---
Q 028410 99 KVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------VSRADPHNLPFF--DEAFDVAFTAH------LA--- 158 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------~~~~d~~~~~~~--~~~fD~i~~~~------~~--- 158 (209)
+++|+-||.|.....+.+.|...+.++|+++.+.+ ++.+|+.++... ...+|+++... ..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag~~ 81 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAGKR 81 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHhhc
Confidence 68999999999998888888878899999987443 467787776532 35799999851 00
Q ss_pred hhh-CH-HHHHH---HHHHhcccCcEEEEEEecCC------cccHHHHHHHhccccc
Q 028410 159 EAL-FP-SRFVG---EMERTVKIGGVCMVLMEECA------GREIKQIVELFRTSSF 204 (209)
Q Consensus 159 ~~~-~~-~~~l~---~~~r~LkpgG~lil~~~~~~------~~~~~~~~~l~~~~~~ 204 (209)
... ++ ..++. ++.+.++|. +++..+..+ ...++.+.+.|+..|+
T Consensus 82 ~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY 136 (275)
T cd00315 82 KGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLTHDNGNTLKVILNTLEELGY 136 (275)
T ss_pred CCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhccCchHHHHHHHHHHHhCCc
Confidence 111 22 22333 444455665 334444433 2346677777777665
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.071 Score=47.48 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=63.0
Q ss_pred CCeEEEEcCCCChhHHHHHhc-----CCceEEEecCCCCCCc---------------EEEcCCCCCCCCCCceeeEEccc
Q 028410 97 HSKVLCVSAGAGHEVMAFNSI-----GVADVTGVELMDSLPL---------------VSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~-----~~~~v~~vD~s~~~~~---------------~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
..+|+-+|+|-|.+.....+. -.-+++++|.+|+++- .+.+|+..++-|.++.|++++-
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE- 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE- 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH-
Confidence 567888899999887765431 2348999999998552 7889999998667999999883
Q ss_pred chhhh-C---HHHHHHHHHHhcccCcEE
Q 028410 157 LAEAL-F---PSRFVGEMERTVKIGGVC 180 (209)
Q Consensus 157 ~~~~~-~---~~~~l~~~~r~LkpgG~l 180 (209)
+...+ | ..++|..+.+.|||+|..
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkpdgIs 474 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKPDGIS 474 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCCCceE
Confidence 22222 2 378999999999999964
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.25 Score=39.24 Aligned_cols=104 Identities=11% Similarity=0.072 Sum_probs=67.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc----------------EEEcCCCCCCC-CCCceeeEEccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL----------------VSRADPHNLPF-FDEAFDVAFTAH 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~----------------~~~~d~~~~~~-~~~~fD~i~~~~ 156 (209)
+.+.++.|+||-.+++..++.+. ....+++.|+++.+++ +..+|... ++ ++..+|+++...
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-~l~~~d~~d~ivIAG 93 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-VLELEDEIDVIVIAG 93 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-ccCccCCcCEEEEeC
Confidence 56677999999999999999884 5678999999998553 44455422 23 345899998866
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+...+ -.+++++-.+.|+.=-++++.- +.....+++.+...++
T Consensus 94 MGG~l-I~~ILee~~~~l~~~~rlILQP----n~~~~~LR~~L~~~~~ 136 (226)
T COG2384 94 MGGTL-IREILEEGKEKLKGVERLILQP----NIHTYELREWLSANSY 136 (226)
T ss_pred CcHHH-HHHHHHHhhhhhcCcceEEECC----CCCHHHHHHHHHhCCc
Confidence 55433 4666666666666433433322 2344555555555444
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.11 Score=44.25 Aligned_cols=96 Identities=11% Similarity=-0.028 Sum_probs=53.6
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc----------CC-------ceEEEecCCCCCC------------------c----
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI----------GV-------ADVTGVELMDSLP------------------L---- 133 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~----------~~-------~~v~~vD~s~~~~------------------~---- 133 (209)
......+|+|+||.+|..+..+... .. -+|+--|.-.+-- .
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 4467789999999999888876441 11 1566666543310 0
Q ss_pred EEEcCCCCCCCCCCceeeEEcccchhhh-C-H--------------------------------------HHHHHHHHHh
Q 028410 134 VSRADPHNLPFFDEAFDVAFTAHLAEAL-F-P--------------------------------------SRFVGEMERT 173 (209)
Q Consensus 134 ~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~-~--------------------------------------~~~l~~~~r~ 173 (209)
-+-+.+.+--||+++.|++++.+..|++ . | ..+|+.=.+-
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 2234455545889999999996433333 1 1 2244444567
Q ss_pred cccCcEEEEEEecCC
Q 028410 174 VKIGGVCMVLMEECA 188 (209)
Q Consensus 174 LkpgG~lil~~~~~~ 188 (209)
|+|||++++.+...+
T Consensus 173 Lv~GG~mvl~~~gr~ 187 (334)
T PF03492_consen 173 LVPGGRMVLTFLGRD 187 (334)
T ss_dssp EEEEEEEEEEEEE-S
T ss_pred eccCcEEEEEEeecc
Confidence 899999999986643
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.029 Score=45.35 Aligned_cols=78 Identities=17% Similarity=0.158 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc--------------EEEcCCCCCCCC
Q 028410 81 YAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL--------------VSRADPHNLPFF 145 (209)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~ 145 (209)
+..+.+.+.. ...+..+|+|+|||.-.++...... +...++|+|++..+++ +...|...-+ +
T Consensus 92 Ld~fY~~if~--~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~ 168 (251)
T PF07091_consen 92 LDEFYDEIFG--RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-P 168 (251)
T ss_dssp HHHHHHHHCC--CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-T
T ss_pred HHHHHHHHHh--cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-C
Confidence 3444444432 3466899999999998888776663 3459999999998554 4556665543 4
Q ss_pred CCceeeEEcccchhhh
Q 028410 146 DEAFDVAFTAHLAEAL 161 (209)
Q Consensus 146 ~~~fD~i~~~~~~~~~ 161 (209)
....|+.+..-+...+
T Consensus 169 ~~~~DlaLllK~lp~l 184 (251)
T PF07091_consen 169 KEPADLALLLKTLPCL 184 (251)
T ss_dssp TSEESEEEEET-HHHH
T ss_pred CCCcchhhHHHHHHHH
Confidence 6789999987655555
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.038 Score=44.32 Aligned_cols=68 Identities=15% Similarity=0.231 Sum_probs=42.2
Q ss_pred EEEcCCCCC--CCCCCceeeEEcc--c-ch------------hhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHH
Q 028410 134 VSRADPHNL--PFFDEAFDVAFTA--H-LA------------EAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQI 195 (209)
Q Consensus 134 ~~~~d~~~~--~~~~~~fD~i~~~--~-~~------------~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~ 195 (209)
+..+|..+. .++++++|+|+.. + +. ... .....+.|+.|+|||||.+++.... .....+
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~---~~~~~~ 80 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW---NRVDRF 80 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc---ccHHHH
Confidence 445665543 4677888888875 1 10 000 1257889999999999987654332 224456
Q ss_pred HHHhccccc
Q 028410 196 VELFRTSSF 204 (209)
Q Consensus 196 ~~l~~~~~~ 204 (209)
...+...||
T Consensus 81 ~~al~~~GF 89 (227)
T PRK13699 81 MAAWKNAGF 89 (227)
T ss_pred HHHHHHCCC
Confidence 666777776
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.11 Score=43.67 Aligned_cols=106 Identities=17% Similarity=0.192 Sum_probs=69.0
Q ss_pred cccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcEE--------EcCCC-C-C---------CCCCCce
Q 028410 91 KSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLVS--------RADPH-N-L---------PFFDEAF 149 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~~--------~~d~~-~-~---------~~~~~~f 149 (209)
....+.+.+||-+|+|+ |..+...|+ .|..+|+.+|+++..+++. .-+.. . . .+.+..+
T Consensus 164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 243 (354)
T KOG0024|consen 164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQP 243 (354)
T ss_pred hcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCC
Confidence 45669999999999996 555555566 6888999999999866511 10100 0 0 1223457
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcc
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT 201 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~ 201 (209)
|+.|...- ....++.....+|+||.++++.......+++..--..+.
T Consensus 244 d~~~dCsG-----~~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~~v~~kE 290 (354)
T KOG0024|consen 244 DVTFDCSG-----AEVTIRAAIKATRSGGTVVLVGMGAEEIQFPIIDVALKE 290 (354)
T ss_pred CeEEEccC-----chHHHHHHHHHhccCCEEEEeccCCCccccChhhhhhhe
Confidence 77776432 234456678899999998888766666666554444433
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.058 Score=37.95 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=28.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS 130 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~ 130 (209)
.+.....|+|||.|.+..-|.+-|+ .=.|+|.-..
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~R 91 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARRR 91 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCCC-Cccccccccc
Confidence 5778999999999999999988665 5568886544
|
; GO: 0008168 methyltransferase activity |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.16 Score=44.00 Aligned_cols=19 Identities=5% Similarity=0.123 Sum_probs=15.8
Q ss_pred CCCeEEEEcCCCChhHHHH
Q 028410 96 NHSKVLCVSAGAGHEVMAF 114 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~l 114 (209)
+...|+|+|||+|..+..+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~ 81 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHI 81 (386)
T ss_pred cceeEEEecCCCCccHHHH
Confidence 4679999999999777655
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.031 Score=41.29 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=39.3
Q ss_pred eEEEecCCCCCCc----------------EEEcCCCCCC--CCCCceeeEEcc--cc---hhhh--C---HHHHHHHHHH
Q 028410 121 DVTGVELMDSLPL----------------VSRADPHNLP--FFDEAFDVAFTA--HL---AEAL--F---PSRFVGEMER 172 (209)
Q Consensus 121 ~v~~vD~s~~~~~----------------~~~~d~~~~~--~~~~~fD~i~~~--~~---~~~~--~---~~~~l~~~~r 172 (209)
+|+|.|+.+++++ ++..+=+++. .+.+++|+++.+ ++ ++.+ . ...+++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 4778888877543 3333333332 223589999876 22 2222 2 2678889999
Q ss_pred hcccCcEEEEEEecCCc
Q 028410 173 TVKIGGVCMVLMEECAG 189 (209)
Q Consensus 173 ~LkpgG~lil~~~~~~~ 189 (209)
.|+|||.++++++....
T Consensus 81 lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HEEEEEEEEEEE--STC
T ss_pred hhccCCEEEEEEeCCCC
Confidence 99999999999887543
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.1 Score=44.15 Aligned_cols=95 Identities=17% Similarity=0.105 Sum_probs=71.6
Q ss_pred cccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC------------------------cEEEcCCCCCCC-C
Q 028410 91 KSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP------------------------LVSRADPHNLPF-F 145 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~------------------------~~~~~d~~~~~~-~ 145 (209)
.+..++|..|.|--.|||.+....+..|. -|.|.||+-.++ +++.+|..+.|+ .
T Consensus 203 ~Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 203 QAMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred hhccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh
Confidence 45569999999999999999999898885 999999986644 377888888775 3
Q ss_pred CCceeeEEccc-------------------------chhhh--C-------HHHHHHHHHHhcccCcEEEEEEec
Q 028410 146 DEAFDVAFTAH-------------------------LAEAL--F-------PSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 146 ~~~fD~i~~~~-------------------------~~~~~--~-------~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+..||.|+|.- ..+.- . ..+.+.-..+.|.-||++++-.+.
T Consensus 282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~ 356 (421)
T KOG2671|consen 282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPT 356 (421)
T ss_pred cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCc
Confidence 56899999950 00000 0 145667778999999998887663
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.042 Score=43.68 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=47.1
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCC----CCCCCCceeeEEcc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHN----LPFFDEAFDVAFTA 155 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~----~~~~~~~fD~i~~~ 155 (209)
....|+|.-||.|..+...+..+. .|+++|++|.. +.|++||+.+ +.+....+|+++.+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 667899999999999999888765 89999999873 3488999876 44555668888875
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.14 Score=44.01 Aligned_cols=94 Identities=13% Similarity=0.073 Sum_probs=60.9
Q ss_pred cccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCC--------CC-CCCceeeE
Q 028410 91 KSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNL--------PF-FDEAFDVA 152 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~--------~~-~~~~fD~i 152 (209)
...+.++.+||..|||+ |..+..+++ .|..+++++|.+++..+. ...+..+. .+ ....+|++
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~v 258 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVC 258 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEE
Confidence 34567889999999987 888888887 565569999987653321 11111111 11 22368888
Q ss_pred Ecccch---------------hh-hCHHHHHHHHHHhcccCcEEEEEE
Q 028410 153 FTAHLA---------------EA-LFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 153 ~~~~~~---------------~~-~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+..--. .. -++...+.++.+.++|+|+++..-
T Consensus 259 ld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 259 IDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 774210 01 134668899999999999987764
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.069 Score=44.24 Aligned_cols=55 Identities=15% Similarity=0.243 Sum_probs=37.5
Q ss_pred CcEEEcCCCCC--CCCCCceeeEEcc--c-c-------------hhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 132 PLVSRADPHNL--PFFDEAFDVAFTA--H-L-------------AEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 132 ~~~~~~d~~~~--~~~~~~fD~i~~~--~-~-------------~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
..++.+|..+. .+++++||+|+++ + . ..+. ...+.+.++.|+|||||.+++....
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~ 82 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST 82 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 34566776663 4567889999885 1 1 0011 1257889999999999999886543
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.068 Score=43.32 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=32.6
Q ss_pred cCCCCC--eEEEEcCCCChhHHHHHhcCCceEEEecCCCC
Q 028410 93 LLFNHS--KVLCVSAGAGHEVMAFNSIGVADVTGVELMDS 130 (209)
Q Consensus 93 ~~~~~~--~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~ 130 (209)
.++++. +|||.=+|+|..+..++..|. +|+++|-++.
T Consensus 83 glk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~ 121 (250)
T PRK10742 83 GIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPV 121 (250)
T ss_pred CCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHH
Confidence 346666 999999999999999999987 6999999987
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.077 Score=38.57 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=34.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP 132 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~ 132 (209)
-.+.+|+|||++-|..+.+++-.|...|+++++++...
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~ 64 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLR 64 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHH
Confidence 46789999999999999999999989999999998844
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.31 Score=40.78 Aligned_cols=90 Identities=21% Similarity=0.283 Sum_probs=56.0
Q ss_pred CCeEEEEcCCCChhHHHHHh-c--------C---C---------ceEEEecCCCC-------------------------
Q 028410 97 HSKVLCVSAGAGHEVMAFNS-I--------G---V---------ADVTGVELMDS------------------------- 130 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~-~--------~---~---------~~v~~vD~s~~------------------------- 130 (209)
..+||+||.|.|.-..+++. . . . .+++.||+.+-
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 47999999999876666654 2 0 0 27888988764
Q ss_pred ---------CCcEEEcCCCCCCCCC-------CceeeEEcccchhhh------CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 131 ---------LPLVSRADPHNLPFFD-------EAFDVAFTAHLAEAL------FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 131 ---------~~~~~~~d~~~~~~~~-------~~fD~i~~~~~~~~~------~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.+.|.+.|+-.+..++ .+.|+|........+ ...+++..+-..++||..++++...
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 0115566665544221 245666543222222 2377899999999998887655443
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.19 Score=42.19 Aligned_cols=40 Identities=10% Similarity=-0.009 Sum_probs=28.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP 132 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~ 132 (209)
..+++...+|.=-|.|..+..+.+ .+.++++|+|.++.++
T Consensus 17 ~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~ 57 (310)
T PF01795_consen 17 NPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEAL 57 (310)
T ss_dssp T--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHH
T ss_pred CcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHH
Confidence 458889999999999999999987 4558999999998855
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.28 Score=44.56 Aligned_cols=91 Identities=19% Similarity=0.140 Sum_probs=58.7
Q ss_pred hcccCCCCCeEEEEcCCCChhHHHHHh-cCC-ceEEEecCCCCCC----cEEEcCCCC----CC----CCCCceeeEEcc
Q 028410 90 GKSLLFNHSKVLCVSAGAGHEVMAFNS-IGV-ADVTGVELMDSLP----LVSRADPHN----LP----FFDEAFDVAFTA 155 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGcG~G~~~~~la~-~~~-~~v~~vD~s~~~~----~~~~~d~~~----~~----~~~~~fD~i~~~ 155 (209)
...++.+...|||+||.+|.+.+..++ .|. +-|+|+|+-|..+ ...+.|++. .+ +..-..|+|+..
T Consensus 38 ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~l~t~~advVLhD 117 (780)
T KOG1098|consen 38 KYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKILKTWKADVVLHD 117 (780)
T ss_pred HhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHHHHhCCCcEEeec
Confidence 345679999999999999999998887 343 4799999987632 234445443 11 122345888874
Q ss_pred c--------chhhh-C---HHHHHHHHHHhcccCcEE
Q 028410 156 H--------LAEAL-F---PSRFVGEMERTVKIGGVC 180 (209)
Q Consensus 156 ~--------~~~~~-~---~~~~l~~~~r~LkpgG~l 180 (209)
. +.... . ....+.-....|..||.+
T Consensus 118 gapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~f 154 (780)
T KOG1098|consen 118 GAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTF 154 (780)
T ss_pred CCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcc
Confidence 1 11111 1 134456667788999993
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.86 Score=34.71 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=49.1
Q ss_pred EcCCCCCC----CCCCceeeEEcc--cchh-------hh-----CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHH
Q 028410 136 RADPHNLP----FFDEAFDVAFTA--HLAE-------AL-----FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVE 197 (209)
Q Consensus 136 ~~d~~~~~----~~~~~fD~i~~~--~~~~-------~~-----~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~ 197 (209)
-.|+.++. ...+.||.|+-+ |+-. .+ -...+++...++|+++|.+.+.......+....+.+
T Consensus 59 ~VDat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~ 138 (166)
T PF10354_consen 59 GVDATKLHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEE 138 (166)
T ss_pred CCCCCcccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHH
Confidence 44555543 356889999986 2320 00 137788999999999999999988876666677777
Q ss_pred Hhccccc
Q 028410 198 LFRTSSF 204 (209)
Q Consensus 198 l~~~~~~ 204 (209)
+-.+.++
T Consensus 139 lA~~~gl 145 (166)
T PF10354_consen 139 LAAEAGL 145 (166)
T ss_pred HHHhcCC
Confidence 7777776
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.22 Score=37.26 Aligned_cols=86 Identities=20% Similarity=0.207 Sum_probs=54.3
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc----------------EEEcCCCCCCCCCCceeeEEcccc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------VSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------------~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
.++..+.+|+|+|.|+...+.++.|....+|+++++-.+. |...|+-...+.+-.+-+||..
T Consensus 70 ~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFga-- 147 (199)
T KOG4058|consen 70 GNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFGA-- 147 (199)
T ss_pred CCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEeeh--
Confidence 3677899999999999999988877668899999987442 5555555555545445555542
Q ss_pred hhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 158 AEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 158 ~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
...+ .++-.++.--+..|..++-+
T Consensus 148 es~m--~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 148 ESVM--PDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred HHHH--hhhHHHHHhhCcCCCeEEEE
Confidence 1111 12223333345556665444
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.1 Score=43.24 Aligned_cols=90 Identities=24% Similarity=0.264 Sum_probs=63.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc-------------------EEEcCCCCC--CCCCCceeeE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL-------------------VSRADPHNL--PFFDEAFDVA 152 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~-------------------~~~~d~~~~--~~~~~~fD~i 152 (209)
.++.++|-||-|.|...+..... ..+++.-+|+.+..++ ...||...+ ..+.++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 66789999999999999888774 4568888888776332 445554331 1347899999
Q ss_pred Eccc---c--hhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 153 FTAH---L--AEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 153 ~~~~---~--~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+..- + ...+.....+..+.+.||+||+++..-
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 8741 1 112245778899999999999965544
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.067 Score=42.99 Aligned_cols=60 Identities=28% Similarity=0.398 Sum_probs=39.2
Q ss_pred CeEEEEcCCCChhHHHHHhcCCceEEEecCCCC------------------------CCcEEEcCCCC-CCCCCCceeeE
Q 028410 98 SKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS------------------------LPLVSRADPHN-LPFFDEAFDVA 152 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~------------------------~~~~~~~d~~~-~~~~~~~fD~i 152 (209)
.+|||.=+|-|..+..++..|. +|+++|-|+. .++++.+|..+ ++.++++||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 4999999999999999998886 8999999986 12377888777 55668999999
Q ss_pred Ecccch
Q 028410 153 FTAHLA 158 (209)
Q Consensus 153 ~~~~~~ 158 (209)
...-++
T Consensus 156 Y~DPMF 161 (234)
T PF04445_consen 156 YFDPMF 161 (234)
T ss_dssp EE--S-
T ss_pred EECCCC
Confidence 986433
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.085 Score=44.97 Aligned_cols=87 Identities=21% Similarity=0.289 Sum_probs=61.9
Q ss_pred CCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCcEEEcCCC---------------CCCC-CCCceeeEEcccchh
Q 028410 97 HSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPLVSRADPH---------------NLPF-FDEAFDVAFTAHLAE 159 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~~~~~d~~---------------~~~~-~~~~fD~i~~~~~~~ 159 (209)
..+|+|.=+|+|.=++..+. .+..+++.-|+||++++.+..++. .+=. ....||+| +++-
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~I---DiDP 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVI---DIDP 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEE---ecCC
Confidence 78999999999999999887 555589999999997663322221 1111 12566666 2233
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
...|..++....+.+|.||.+.+..-.
T Consensus 130 FGSPaPFlDaA~~s~~~~G~l~vTATD 156 (380)
T COG1867 130 FGSPAPFLDAALRSVRRGGLLCVTATD 156 (380)
T ss_pred CCCCchHHHHHHHHhhcCCEEEEEecc
Confidence 335799999999999999997766544
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.56 Score=38.47 Aligned_cols=90 Identities=12% Similarity=0.014 Sum_probs=59.9
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC--------CCcEEEcCCCCCCCCCCceeeEEc
Q 028410 83 HFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------LPLVSRADPHNLPFFDEAFDVAFT 154 (209)
Q Consensus 83 ~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~--------~~~~~~~d~~~~~~~~~~fD~i~~ 154 (209)
.+++.-.....+.+++...|+|+-+|.++..|-+.+- .|++||--+- .++....|-....-.....|..+|
T Consensus 198 tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVC 276 (358)
T COG2933 198 TFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVC 276 (358)
T ss_pred HhcChhhhhhhhcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEe
Confidence 3333333334459999999999999999999999865 9999996554 233555565554434577999999
Q ss_pred ccchhhhCHHHHHHHHHHhccc
Q 028410 155 AHLAEALFPSRFVGEMERTVKI 176 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~Lkp 176 (209)
.-+.. |.++-.-|...|..
T Consensus 277 DmVEk---P~rv~~li~~Wl~n 295 (358)
T COG2933 277 DMVEK---PARVAALIAKWLVN 295 (358)
T ss_pred ehhcC---cHHHHHHHHHHHHc
Confidence 64433 54444445454443
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.37 Score=40.68 Aligned_cols=85 Identities=16% Similarity=0.237 Sum_probs=50.8
Q ss_pred CCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCC-----CCCCCCceeeEEcccchhh
Q 028410 95 FNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHN-----LPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 95 ~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~-----~~~~~~~fD~i~~~~~~~~ 160 (209)
.++.+||=.||| .|..+..+++ .|..+|+++|.+++..+. ...|..+ .....+.+|+++...-
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G--- 244 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG--- 244 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC---
Confidence 468899988875 2344444555 466579999988764331 1112111 1111234888876311
Q ss_pred hCHHHHHHHHHHhcccCcEEEEEE
Q 028410 161 LFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 161 ~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
....+....+.+++||+++++-
T Consensus 245 --~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 245 --HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred --CHHHHHHHHHHhhcCCEEEEEc
Confidence 1345778889999999987664
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.94 Score=36.59 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=57.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc--------------EEEcCCCC-CCC-CCCceeeEEcccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL--------------VSRADPHN-LPF-FDEAFDVAFTAHL 157 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~--------------~~~~d~~~-~~~-~~~~fD~i~~~~~ 157 (209)
-.+.+||.+|=.. ..+.+++- ....+|+.+|+++..++ ....|..+ +|- -.++||++++.-.
T Consensus 43 L~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 43 LEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---
T ss_pred ccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC
Confidence 4688999999443 44555554 33469999999998554 55666655 331 2489999999532
Q ss_pred hhhhCHHHHHHHHHHhcccCc-EEEEEEecCC--cccHHHHHHHhcccccc
Q 028410 158 AEALFPSRFVGEMERTVKIGG-VCMVLMEECA--GREIKQIVELFRTSSFT 205 (209)
Q Consensus 158 ~~~~~~~~~l~~~~r~LkpgG-~lil~~~~~~--~~~~~~~~~l~~~~~~~ 205 (209)
...--..-++......||..| ..++.+.... ......+.+.+...|++
T Consensus 122 yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~ 172 (243)
T PF01861_consen 122 YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLV 172 (243)
T ss_dssp SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--E
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcC
Confidence 211123667788888898755 6556555543 22334577777777763
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.85 Score=38.05 Aligned_cols=41 Identities=12% Similarity=-0.003 Sum_probs=33.7
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCCC
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSLP 132 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~~ 132 (209)
...+++...+|.=-|.|..+..+.+. + .+.++|+|.++.++
T Consensus 19 L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai 61 (314)
T COG0275 19 LAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAI 61 (314)
T ss_pred cccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHH
Confidence 35688899999999999999998874 3 46899999998743
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.24 Score=42.64 Aligned_cols=101 Identities=15% Similarity=0.084 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC------------------------cEE
Q 028410 81 YAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP------------------------LVS 135 (209)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~------------------------~~~ 135 (209)
....+....+...++++....|+|+|-|.....++.. +...-.|+++.+..- +.+
T Consensus 177 ~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i 256 (419)
T KOG3924|consen 177 QLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETI 256 (419)
T ss_pred hHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeec
Confidence 3344444555558899999999999999999998885 455777888877632 245
Q ss_pred EcCCCCCC---CCCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEE
Q 028410 136 RADPHNLP---FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCM 181 (209)
Q Consensus 136 ~~d~~~~~---~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~li 181 (209)
++++.+.. .-....++|+.+++...-+...=+.++..-+++|-+++
T Consensus 257 ~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIi 305 (419)
T KOG3924|consen 257 HGSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRII 305 (419)
T ss_pred ccccCCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEe
Confidence 55554432 12456788888776553333333458899999999843
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.15 Score=43.43 Aligned_cols=87 Identities=20% Similarity=0.189 Sum_probs=57.4
Q ss_pred CCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcEEEc----CCCCCC-----------CCC-CceeeEEccc
Q 028410 95 FNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLVSRA----DPHNLP-----------FFD-EAFDVAFTAH 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~~~~----d~~~~~-----------~~~-~~fD~i~~~~ 156 (209)
.++.+|+=+|||+ |..+..+++ .|..+|+.+|.++..++.... +....+ ... ..+|+++-..
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 4455999999996 566566666 588899999999986652211 100111 111 3688887632
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
- ....+..+.+.+||||.++++--.
T Consensus 247 G-----~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 247 G-----SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred C-----CHHHHHHHHHHhcCCCEEEEEecc
Confidence 1 344788999999999998777443
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.33 Score=43.59 Aligned_cols=90 Identities=22% Similarity=0.312 Sum_probs=58.7
Q ss_pred CCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCc--------EEEcCCCC-----------CC----------
Q 028410 95 FNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPL--------VSRADPHN-----------LP---------- 143 (209)
Q Consensus 95 ~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~--------~~~~d~~~-----------~~---------- 143 (209)
.++.+|+=+|||. |..+...++ .|. +|+++|.+++..+ +...|..+ ..
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 5799999999994 555555566 576 8999999987332 22222211 00
Q ss_pred CCC--CceeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 144 FFD--EAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 144 ~~~--~~fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+.+ ..+|+++.......- .|..+.+++.+.+||||+++.+-.
T Consensus 242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 358999985433221 344446999999999999877654
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=92.79 E-value=1 Score=32.64 Aligned_cols=61 Identities=18% Similarity=0.134 Sum_probs=36.5
Q ss_pred CCCCeEEEEcCCCCh-hHHHHHhcCCceEEEecCCCC----CCcEEEcCCCCCCCC-CCceeeEEccc
Q 028410 95 FNHSKVLCVSAGAGH-EVMAFNSIGVADVTGVELMDS----LPLVSRADPHNLPFF-DEAFDVAFTAH 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~-~~~~la~~~~~~v~~vD~s~~----~~~~~~~d~~~~~~~-~~~fD~i~~~~ 156 (209)
.+..+|+|+|-|.-. .+..|++.|. .|+++|+++. .+.++.-|+.+..+. -...|+|.+-.
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~~a~~g~~~v~DDif~P~l~iY~~a~lIYSiR 78 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPRKAPEGVNFVVDDIFNPNLEIYEGADLIYSIR 78 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S----STTEE---SSS--HHHHTTEEEEEEES
T ss_pred CCCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECcccccccCcceeeecccCCCHHHhcCCcEEEEeC
Confidence 456699999999764 4444556786 9999999998 677888888875432 25688888843
|
; PDB: 2K4M_A. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.43 Score=39.86 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCChhHHHHH-h-cCCceEEEecCCCCCC
Q 028410 97 HSKVLCVSAGAGHEVMAFN-S-IGVADVTGVELMDSLP 132 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la-~-~~~~~v~~vD~s~~~~ 132 (209)
..++||||+|....=.-|+ + +++ +++|+|+++..+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl 139 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSL 139 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHH
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHH
Confidence 5799999999875433333 3 565 999999998733
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=92.18 E-value=2 Score=30.69 Aligned_cols=76 Identities=17% Similarity=0.151 Sum_probs=50.8
Q ss_pred CCCCeEEEEcCCCC-hhHHHHHhcCCceEEEecCCCCCC----cEEEcCCCCCCCC-CCceeeEEcccchhhhCHHHHHH
Q 028410 95 FNHSKVLCVSAGAG-HEVMAFNSIGVADVTGVELMDSLP----LVSRADPHNLPFF-DEAFDVAFTAHLAEALFPSRFVG 168 (209)
Q Consensus 95 ~~~~~iLDiGcG~G-~~~~~la~~~~~~v~~vD~s~~~~----~~~~~d~~~~~~~-~~~fD~i~~~~~~~~~~~~~~l~ 168 (209)
....+|.++|.|.= ..+..|++.|+ .++++|+++... .+.+-|+.+.... -...|+|.+-. .|.++..
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~~a~~g~~~v~DDitnP~~~iY~~A~lIYSiR-----pppEl~~ 85 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEKTAPEGLRFVVDDITNPNISIYEGADLIYSIR-----PPPELQS 85 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHcCC-cEEEEecccccCcccceEEEccCCCccHHHhhCccceeecC-----CCHHHHH
Confidence 44569999999854 34556677887 999999998743 3788888876531 24567776621 3555666
Q ss_pred HHHHhccc
Q 028410 169 EMERTVKI 176 (209)
Q Consensus 169 ~~~r~Lkp 176 (209)
.+.++-+.
T Consensus 86 ~ildva~a 93 (129)
T COG1255 86 AILDVAKA 93 (129)
T ss_pred HHHHHHHh
Confidence 66666554
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=92.15 E-value=1.6 Score=36.12 Aligned_cols=89 Identities=18% Similarity=0.204 Sum_probs=56.3
Q ss_pred hcccCCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCc--------EEEcCCCCC------CCCCCceeeEE
Q 028410 90 GKSLLFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPL--------VSRADPHNL------PFFDEAFDVAF 153 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~--------~~~~d~~~~------~~~~~~fD~i~ 153 (209)
....+.++.+||..|+| .|..+..+++ .|. +|++++.++...+ .+..+-... ....+.+|+++
T Consensus 159 ~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vi 237 (338)
T cd08254 159 RAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIF 237 (338)
T ss_pred hccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEE
Confidence 34456788899998876 3667777777 565 7889888765332 111111110 12345688887
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
... .....+.++.+.|+++|.++...
T Consensus 238 d~~-----g~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 238 DFV-----GTQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred ECC-----CCHHHHHHHHHHhhcCCEEEEEC
Confidence 531 12356788999999999987653
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.11 Score=44.80 Aligned_cols=89 Identities=25% Similarity=0.259 Sum_probs=57.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHh--cCCceEEEecCCCCCCcEE-----------------EcCCCCC-CCCCCceeeEEc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS--IGVADVTGVELMDSLPLVS-----------------RADPHNL-PFFDEAFDVAFT 154 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~--~~~~~v~~vD~s~~~~~~~-----------------~~d~~~~-~~~~~~fD~i~~ 154 (209)
..+.++||.=+|+|.=+...+. .+..+|+.-|+|+++++.+ ..|+..+ ....+.||+|
T Consensus 48 ~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~I-- 125 (377)
T PF02005_consen 48 KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVI-- 125 (377)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEE--
T ss_pred cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEE--
Confidence 3567999999999988887776 2557999999999855432 2333221 1245678888
Q ss_pred ccchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+++-+..|..++....+.+|.||.+.+..-+
T Consensus 126 -DlDPfGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 126 -DLDPFGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp -EE--SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred -EeCCCCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 3344446899999999999999997776544
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.56 Score=38.42 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=38.4
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHh-c-----CCceEEEecCCCC
Q 028410 83 HFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNS-I-----GVADVTGVELMDS 130 (209)
Q Consensus 83 ~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~-~-----~~~~v~~vD~s~~ 130 (209)
.++..+.....+.+...++|+|||.|.++.++++ . +...++.||....
T Consensus 5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~ 58 (259)
T PF05206_consen 5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASN 58 (259)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcc
Confidence 3566666777889999999999999999999988 3 2347888987654
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.75 Score=42.67 Aligned_cols=104 Identities=15% Similarity=0.117 Sum_probs=65.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-c-------C-----CceEEEecCCCCC------------------------------
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-I-------G-----VADVTGVELMDSL------------------------------ 131 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~-------~-----~~~v~~vD~s~~~------------------------------ 131 (209)
++.-+|+|+|=|+|.......+ . + .-+++++|..|-.
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 4558999999999986555432 1 1 2378888875420
Q ss_pred -------------CcEEEcCCCC-CCCCCCceeeEEcccchhhhCH----HHHHHHHHHhcccCcEEEEEEecCCcccHH
Q 028410 132 -------------PLVSRADPHN-LPFFDEAFDVAFTAHLAEALFP----SRFVGEMERTVKIGGVCMVLMEECAGREIK 193 (209)
Q Consensus 132 -------------~~~~~~d~~~-~~~~~~~fD~i~~~~~~~~~~~----~~~l~~~~r~LkpgG~lil~~~~~~~~~~~ 193 (209)
+....+|+.+ ++--+..||+++...+.-..+| .++++++.|.++|||.+ .+.. .-.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~--~t~t----~a~ 209 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATL--ATFT----SAG 209 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEE--EEee----hHH
Confidence 0133445433 2211256899988654433344 88999999999999984 4443 234
Q ss_pred HHHHHhccccc
Q 028410 194 QIVELFRTSSF 204 (209)
Q Consensus 194 ~~~~l~~~~~~ 204 (209)
.++.-+..+||
T Consensus 210 ~vr~~l~~~GF 220 (662)
T PRK01747 210 FVRRGLQEAGF 220 (662)
T ss_pred HHHHHHHHcCC
Confidence 45666666666
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=90.81 E-value=2.1 Score=33.98 Aligned_cols=92 Identities=20% Similarity=0.134 Sum_probs=56.6
Q ss_pred hcccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcEE-------EcCCCCCC-------CCCCceeeEE
Q 028410 90 GKSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLVS-------RADPHNLP-------FFDEAFDVAF 153 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~~-------~~d~~~~~-------~~~~~fD~i~ 153 (209)
....+.++.+||..|+|+ |.....+++ .| .+|++++.++...+.. ..+..+.. ...+.+|+++
T Consensus 128 ~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 128 RAGVLKPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVI 206 (271)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEE
Confidence 334457889999999986 555555666 46 4899998876432211 11111111 1235689888
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
...- ....+....+.++++|.++......
T Consensus 207 ~~~~-----~~~~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 207 DAVG-----GPETLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred ECCC-----CHHHHHHHHHhcccCCEEEEEccCC
Confidence 6321 1145677889999999987765443
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.26 Score=38.54 Aligned_cols=38 Identities=24% Similarity=0.263 Sum_probs=29.8
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL 131 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~ 131 (209)
...++..|||.-||+|..+.+..+.+. +.+|+|+++..
T Consensus 188 ~t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y 225 (231)
T PF01555_consen 188 STNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEY 225 (231)
T ss_dssp HS-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHH
T ss_pred hhccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHH
Confidence 358899999999999999999888864 99999998753
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=89.92 E-value=4.6 Score=30.62 Aligned_cols=92 Identities=15% Similarity=0.112 Sum_probs=57.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC-----cEEEcCCCCC---C--CCCCceeeEEcccchhhhC-H
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-----LVSRADPHNL---P--FFDEAFDVAFTAHLAEALF-P 163 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~-----~~~~~d~~~~---~--~~~~~fD~i~~~~~~~~~~-~ 163 (209)
.+..+|+.+||-+-.....-...+..++.-.|++...- .+..-|.... | + .++||+|++.-=+-.-+ .
T Consensus 24 ~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~~~~F~fyD~~~p~~~~~~l-~~~~d~vv~DPPFl~~ec~ 102 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFGGDEFVFYDYNEPEELPEEL-KGKFDVVVIDPPFLSEECL 102 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcCCcceEECCCCChhhhhhhc-CCCceEEEECCCCCCHHHH
Confidence 56789999999865554433113345888888876622 2665565542 2 2 57999999952111001 2
Q ss_pred HHHHHHHHHhcccCcEEEEEEecC
Q 028410 164 SRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 164 ~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
.+....+...+|+++.++++++..
T Consensus 103 ~k~a~ti~~L~k~~~kii~~Tg~~ 126 (162)
T PF10237_consen 103 TKTAETIRLLLKPGGKIILCTGEE 126 (162)
T ss_pred HHHHHHHHHHhCccceEEEecHHH
Confidence 344456666668899999888864
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.71 E-value=0.094 Score=46.29 Aligned_cols=89 Identities=20% Similarity=0.253 Sum_probs=65.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-c-CCceEEEecCCCCCCcEEEcCCCCC--------------------CCCCCceeeE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-I-GVADVTGVELMDSLPLVSRADPHNL--------------------PFFDEAFDVA 152 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~-~~~~v~~vD~s~~~~~~~~~d~~~~--------------------~~~~~~fD~i 152 (209)
.++.+|||.=|++|.-+...+. . +..+|++-|.++..++.++.+++-. +-.+..||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 5678999999999998888887 3 6789999999998776333332211 2234778888
Q ss_pred EcccchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
-. +-+..+..+|....+.++.||.+++..-.
T Consensus 188 DL---DPyGs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 188 DL---DPYGSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred ec---CCCCCccHHHHHHHHHhhcCCEEEEEecc
Confidence 43 33335788999999999999998776544
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.23 E-value=0.39 Score=39.78 Aligned_cols=39 Identities=18% Similarity=0.043 Sum_probs=34.2
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL 133 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~ 133 (209)
..++..|||--||+|..+.+..+.| .+.+|+|++++..+
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lg-R~~IG~Ei~~~Y~~ 244 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASG-RKFIGIEINSEYIK 244 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcC-CCEEEEeCCHHHHH
Confidence 4889999999999999999888886 49999999998554
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=89.08 E-value=4.8 Score=32.27 Aligned_cols=60 Identities=17% Similarity=0.040 Sum_probs=43.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCC---------CcEEEcCCCCC-----------CCCCCcee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSL---------PLVSRADPHNL-----------PFFDEAFD 150 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~---------~~~~~~d~~~~-----------~~~~~~fD 150 (209)
.....||-.||.+|..+.+++. .|+ .|++.-.+-+. +.....|+.+. .+++++.|
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld 83 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLD 83 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceE
Confidence 5678999999999999988876 376 88887655442 22445555542 25789999
Q ss_pred eEEcc
Q 028410 151 VAFTA 155 (209)
Q Consensus 151 ~i~~~ 155 (209)
+.+.+
T Consensus 84 ~L~NN 88 (289)
T KOG1209|consen 84 LLYNN 88 (289)
T ss_pred EEEcC
Confidence 99875
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=89.05 E-value=1.2 Score=36.94 Aligned_cols=83 Identities=14% Similarity=0.118 Sum_probs=50.3
Q ss_pred CCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCcEEEc----CCCCCCCCCCceeeEEcccchhhhCHHHHHH
Q 028410 95 FNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPLVSRA----DPHNLPFFDEAFDVAFTAHLAEALFPSRFVG 168 (209)
Q Consensus 95 ~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~~~~~----d~~~~~~~~~~fD~i~~~~~~~~~~~~~~l~ 168 (209)
.++.++|=+||| -|..+..+++ .|...|.++|.++..++.... |..+. ....+|+|+-..- ....+.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~--~~~g~Dvvid~~G-----~~~~~~ 215 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKD--PRRDYRAIYDASG-----DPSLID 215 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhc--cCCCCCEEEECCC-----CHHHHH
Confidence 356788888875 3455555665 576567788887664432211 11110 1245888876311 234567
Q ss_pred HHHHhcccCcEEEEEE
Q 028410 169 EMERTVKIGGVCMVLM 184 (209)
Q Consensus 169 ~~~r~LkpgG~lil~~ 184 (209)
+..+.+++||+++++-
T Consensus 216 ~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 216 TLVRRLAKGGEIVLAG 231 (308)
T ss_pred HHHHhhhcCcEEEEEe
Confidence 8889999999988654
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=88.76 E-value=2.1 Score=36.28 Aligned_cols=88 Identities=13% Similarity=0.092 Sum_probs=52.2
Q ss_pred cccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC--------CCCCceeeEE
Q 028410 91 KSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAFDVAF 153 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~i~ 153 (209)
...++++.+||=.|+|. |..+..+++ .|..+|+++|.++...++ ...+..+.. .....+|+++
T Consensus 171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vi 250 (358)
T TIGR03451 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVI 250 (358)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEE
Confidence 34568899999998752 344455555 465469999887763321 111211111 1123578887
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
-.-- ....+.+..+.+++||+++++
T Consensus 251 d~~g-----~~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 251 DAVG-----RPETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred ECCC-----CHHHHHHHHHHhccCCEEEEE
Confidence 5211 124567778899999997765
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=88.65 E-value=3 Score=37.37 Aligned_cols=93 Identities=14% Similarity=0.187 Sum_probs=60.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cC----CceEEEecCCCCCCc----------------EEEcCCCCCC-C----CCCc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IG----VADVTGVELMDSLPL----------------VSRADPHNLP-F----FDEA 148 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~----~~~v~~vD~s~~~~~----------------~~~~d~~~~~-~----~~~~ 148 (209)
.+..+|.|-.||+|.......+ .+ ...++|.|+++.... ...+|...-| . ..+.
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~ 264 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGK 264 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccc
Confidence 5677999999999988777666 22 246899998776221 2222222222 2 3367
Q ss_pred eeeEEcccch---------------------hhh-----CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 149 FDVAFTAHLA---------------------EAL-----FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 149 fD~i~~~~~~---------------------~~~-----~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
||+|+++.-+ ... ....+++.+...|+|||+..+++...
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 9999986100 000 01678899999999999777666553
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=86.96 E-value=0.87 Score=36.49 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=33.9
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL 133 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~ 133 (209)
...++..|||--||+|..+.+..+.|. +.+|+|+++...+
T Consensus 160 ~s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~ 199 (227)
T PRK13699 160 FTHPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHR 199 (227)
T ss_pred hCCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHH
Confidence 347899999999999999998888765 9999999887443
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=86.96 E-value=2.2 Score=34.57 Aligned_cols=37 Identities=16% Similarity=0.087 Sum_probs=27.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc---------CCceEEEecCCCCC
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI---------GVADVTGVELMDSL 131 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~---------~~~~v~~vD~s~~~ 131 (209)
....+|+|+|+|+|.++..+.+. ...+++-||+|+.+
T Consensus 17 ~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L 62 (252)
T PF02636_consen 17 SEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYL 62 (252)
T ss_dssp SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCC
T ss_pred CcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHH
Confidence 34589999999999999888761 12489999999983
|
; PDB: 4F3N_A 1ZKD_B. |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=86.85 E-value=2.1 Score=36.14 Aligned_cols=89 Identities=9% Similarity=-0.032 Sum_probs=52.0
Q ss_pred CCCCCeEEEEcCCC-ChhHHHHHh--cCCceEEEecCCCCCCcEEEc-CCC-CC-CCCC-CceeeEEcccchhhhCHHHH
Q 028410 94 LFNHSKVLCVSAGA-GHEVMAFNS--IGVADVTGVELMDSLPLVSRA-DPH-NL-PFFD-EAFDVAFTAHLAEALFPSRF 166 (209)
Q Consensus 94 ~~~~~~iLDiGcG~-G~~~~~la~--~~~~~v~~vD~s~~~~~~~~~-d~~-~~-~~~~-~~fD~i~~~~~~~~~~~~~~ 166 (209)
.+++.+||-+|||. |..+..+++ .|..+|+++|.+++..+.... +.. .. .+.+ ..+|+|+-.- ........
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~--G~~~~~~~ 238 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECV--GGRGSQSA 238 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECC--CCCccHHH
Confidence 46789999999753 233334444 344589999998875543211 110 00 1111 2478887521 10012456
Q ss_pred HHHHHHhcccCcEEEEEE
Q 028410 167 VGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 167 l~~~~r~LkpgG~lil~~ 184 (209)
+.+..+.+++||+++++-
T Consensus 239 ~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 239 INQIIDYIRPQGTIGLMG 256 (341)
T ss_pred HHHHHHhCcCCcEEEEEe
Confidence 788899999999987653
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=86.72 E-value=2.2 Score=35.47 Aligned_cols=89 Identities=20% Similarity=0.151 Sum_probs=52.9
Q ss_pred cccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC------CCCCceeeEEcc
Q 028410 91 KSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP------FFDEAFDVAFTA 155 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~------~~~~~fD~i~~~ 155 (209)
...+.++.+||-+|+|. |..+..+++ .|...++.++.+++..++ ...+..+.. .....+|+++..
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~ 233 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEA 233 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEEC
Confidence 34567889999998642 445555555 465448888776653321 111111111 134568998863
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
.- ....+.++.+.|+++|.++.+-
T Consensus 234 ~~-----~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 234 TG-----VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CC-----ChHHHHHHHHHHhcCCEEEEEe
Confidence 11 1346778899999999987653
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.62 E-value=1.1 Score=39.68 Aligned_cols=100 Identities=15% Similarity=0.109 Sum_probs=68.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCC-----C----------CCCCCCCceee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADP-----H----------NLPFFDEAFDV 151 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~-----~----------~~~~~~~~fD~ 151 (209)
..+.++|-+|-|+|.+...+.. .+...++++++.|.++++ .+.+- . +..-.+..||+
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 5678999999999999988876 676799999999998762 22220 0 11124577999
Q ss_pred EEcc--cc-hhhh-C-H-----HHHHHHHHHhcccCcEEEEEEecCCcccHHH
Q 028410 152 AFTA--HL-AEAL-F-P-----SRFVGEMERTVKIGGVCMVLMEECAGREIKQ 194 (209)
Q Consensus 152 i~~~--~~-~~~~-~-~-----~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~ 194 (209)
+... .- .+-+ . | ..++..+...|.|-|.+++..-..+.....+
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~ 426 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDE 426 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHH
Confidence 8763 11 2212 1 1 6778899999999999988776655444333
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=86.33 E-value=0.55 Score=33.44 Aligned_cols=75 Identities=15% Similarity=0.097 Sum_probs=48.8
Q ss_pred CChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCC-------C-CCCCceeeEEcccchhhhCHHHHHHHH
Q 028410 107 AGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNL-------P-FFDEAFDVAFTAHLAEALFPSRFVGEM 170 (209)
Q Consensus 107 ~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~-------~-~~~~~fD~i~~~~~~~~~~~~~~l~~~ 170 (209)
-|..+..+++ .| .+|+++|.++...++ ...|..+. . .+.+.+|+++-.-- -...+++.
T Consensus 2 vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~~~~~~~~ 75 (130)
T PF00107_consen 2 VGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-----SGDTLQEA 75 (130)
T ss_dssp HHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----SHHHHHHH
T ss_pred hHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC-----cHHHHHHH
Confidence 4677777877 57 699999988864331 11122221 1 23357999976321 24678899
Q ss_pred HHhcccCcEEEEEEecC
Q 028410 171 ERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 171 ~r~LkpgG~lil~~~~~ 187 (209)
.+.++|||.++++-...
T Consensus 76 ~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 76 IKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHEEEEEEEEEESSTS
T ss_pred HHHhccCCEEEEEEccC
Confidence 99999999987775554
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=85.83 E-value=5.5 Score=33.18 Aligned_cols=84 Identities=25% Similarity=0.311 Sum_probs=50.9
Q ss_pred CCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCC-----CCCCCCCceeeEEcccchhhh
Q 028410 96 NHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPH-----NLPFFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 96 ~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~-----~~~~~~~~fD~i~~~~~~~~~ 161 (209)
++.+||-.|||. |..+..+++ .|..++++++.++...+. ...+.. +.....+.+|+++...-
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g---- 240 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASG---- 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCC----
Confidence 788899988765 556666666 465578888877553220 011111 11111234888876321
Q ss_pred CHHHHHHHHHHhcccCcEEEEEE
Q 028410 162 FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 162 ~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
....+.+..+.|+++|+++.+.
T Consensus 241 -~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 -APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred -CHHHHHHHHHHHhcCCEEEEEe
Confidence 1235778899999999987653
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.42 E-value=7.8 Score=32.33 Aligned_cols=102 Identities=10% Similarity=-0.001 Sum_probs=61.8
Q ss_pred CCeEEEEcCC--CChhHHHHHhcCCceEEEecCCCCCCc-------E-EEcCC--CCC------CCCCCceeeEEcccch
Q 028410 97 HSKVLCVSAG--AGHEVMAFNSIGVADVTGVELMDSLPL-------V-SRADP--HNL------PFFDEAFDVAFTAHLA 158 (209)
Q Consensus 97 ~~~iLDiGcG--~G~~~~~la~~~~~~v~~vD~s~~~~~-------~-~~~d~--~~~------~~~~~~fD~i~~~~~~ 158 (209)
.++|+=+|+| .|.++..|++.|. +|+.++.+++.++ + +..+- ... +-+.+.||+|+.. .
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~--v 78 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLA--C 78 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEE--C
Confidence 3578889988 3456666666665 8888887643211 1 11111 111 1123579999873 2
Q ss_pred hhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccc
Q 028410 159 EALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSS 203 (209)
Q Consensus 159 ~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~ 203 (209)
...+..+.+..+...+.++..++.+.+..+ ....+.+.|....
T Consensus 79 K~~~~~~al~~l~~~l~~~t~vv~lQNGv~--~~e~l~~~~~~~~ 121 (305)
T PRK05708 79 KAYDAEPAVASLAHRLAPGAELLLLQNGLG--SQDAVAARVPHAR 121 (305)
T ss_pred CHHhHHHHHHHHHhhCCCCCEEEEEeCCCC--CHHHHHHhCCCCc
Confidence 223467788999999999998777766654 3445666665443
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=85.20 E-value=2 Score=35.55 Aligned_cols=103 Identities=17% Similarity=0.108 Sum_probs=66.6
Q ss_pred eEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC--------cEEEcCCCCCC---CCCCceeeEEcc---------cch
Q 028410 99 KVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------LVSRADPHNLP---FFDEAFDVAFTA---------HLA 158 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~--------~~~~~d~~~~~---~~~~~fD~i~~~---------~~~ 158 (209)
+++|+-||-|.....+.+.|+.-+.++|+++... ....+|+.++. ++. .+|+++.. .-.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ag~~ 80 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFPEVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIAGKR 80 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHTEEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTTSTH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcccccccccccccccccccc-cceEEEeccCCceEeccccc
Confidence 7899999999999999998887899999998844 46677877765 443 59999874 111
Q ss_pred hhh-CH----HHHHHHHHHhcccCcEEEEEEecCCc------ccHHHHHHHhccccc
Q 028410 159 EAL-FP----SRFVGEMERTVKIGGVCMVLMEECAG------REIKQIVELFRTSSF 204 (209)
Q Consensus 159 ~~~-~~----~~~l~~~~r~LkpgG~lil~~~~~~~------~~~~~~~~l~~~~~~ 204 (209)
... |+ -.-+.++.+.++|.-. +..+..+- ..+..+.+.|+..|+
T Consensus 81 ~~~~d~r~~L~~~~~~~v~~~~Pk~~--~~ENV~~l~~~~~~~~~~~i~~~l~~lGY 135 (335)
T PF00145_consen 81 KGFDDPRNSLFFEFLRIVKELKPKYF--LLENVPGLLSSKNGEVFKEILEELEELGY 135 (335)
T ss_dssp HCCCCHTTSHHHHHHHHHHHHS-SEE--EEEEEGGGGTGGGHHHHHHHHHHHHHTTE
T ss_pred cccccccchhhHHHHHHHhhccceEE--Eecccceeeccccccccccccccccccce
Confidence 111 23 2234555666788554 44444321 346777777777665
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.95 E-value=0.68 Score=40.65 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL 133 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~ 133 (209)
....+||||+|||.++...+..|...|++++.-..|.+
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d 103 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVD 103 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHH
Confidence 34579999999999998877777779999998777654
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=84.63 E-value=4.9 Score=34.22 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=52.2
Q ss_pred cccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC-------CCCCceeeEEc
Q 028410 91 KSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP-------FFDEAFDVAFT 154 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~-------~~~~~fD~i~~ 154 (209)
...++++.+||=.|+|. |..+..+++ .|..+|+++|.++...++ ...+..+.. ...+.+|+++.
T Consensus 186 ~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid 265 (371)
T cd08281 186 TAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFE 265 (371)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEE
Confidence 34567888999998752 344444555 465579999988763321 111111110 11235788875
Q ss_pred ccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
..- ....+....+.+++||.++.+-
T Consensus 266 ~~G-----~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 266 MAG-----SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CCC-----ChHHHHHHHHHHhcCCEEEEEc
Confidence 211 1345777889999999977653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=84.58 E-value=2.5 Score=35.70 Aligned_cols=85 Identities=18% Similarity=0.188 Sum_probs=49.6
Q ss_pred CCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCC---CCCCc------EEEcCCCCCC----CCCCceeeEEcccch
Q 028410 94 LFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELM---DSLPL------VSRADPHNLP----FFDEAFDVAFTAHLA 158 (209)
Q Consensus 94 ~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s---~~~~~------~~~~d~~~~~----~~~~~fD~i~~~~~~ 158 (209)
..++.+||-+|+|. |..+..+++ .|. +|++++.+ +...+ ....+..+.. ...+.+|+|+-..-
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g- 247 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATG- 247 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcC-
Confidence 35788999998763 455555666 466 89998863 33211 0111211111 01245788876321
Q ss_pred hhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 159 EALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 159 ~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
....+.+..+.+++||.++++-
T Consensus 248 ----~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 248 ----VPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred ----CHHHHHHHHHHccCCcEEEEEe
Confidence 1236788899999999976653
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=84.47 E-value=1.5 Score=39.40 Aligned_cols=91 Identities=22% Similarity=0.287 Sum_probs=56.5
Q ss_pred CCCCeEEEEcCCCC-hhHHHHHh-cCCceEEEecCCCCCCc--------EEEcCCCC-----------C--C--------
Q 028410 95 FNHSKVLCVSAGAG-HEVMAFNS-IGVADVTGVELMDSLPL--------VSRADPHN-----------L--P-------- 143 (209)
Q Consensus 95 ~~~~~iLDiGcG~G-~~~~~la~-~~~~~v~~vD~s~~~~~--------~~~~d~~~-----------~--~-------- 143 (209)
.++.+++=+|+|.= ..+...+. .|. .|+.+|.++...+ ++..|..+ . +
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 45789999999843 44444444 565 7999998876332 32333211 0 0
Q ss_pred CC--CCceeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 144 FF--DEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 144 ~~--~~~fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
++ -..+|+|++.-+..-. .|.-+.+++.+.+|||+.++-+..+
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeC
Confidence 11 2569999885433322 4555779999999999997755443
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=84.47 E-value=3.7 Score=33.63 Aligned_cols=109 Identities=13% Similarity=0.194 Sum_probs=56.6
Q ss_pred CCCCCeEEEEcCCCCh---h-HHHHHh-cCC-ceEEEecCCCC---CCcEEEcCCCCCCCCCCceeeEEcccc-------
Q 028410 94 LFNHSKVLCVSAGAGH---E-VMAFNS-IGV-ADVTGVELMDS---LPLVSRADPHNLPFFDEAFDVAFTAHL------- 157 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~---~-~~~la~-~~~-~~v~~vD~s~~---~~~~~~~d~~~~~~~~~~fD~i~~~~~------- 157 (209)
...+++||.+|+|+-. - +..|.+ .|. .-++-.|+.+- +-..+.+|..... ++.++|+|++.-.
T Consensus 59 VP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vSDa~~~~~~Dc~t~~-~~~k~DlIiSDmYd~~~k~~ 137 (299)
T PF06460_consen 59 VPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVSDADQSIVGDCRTYM-PPDKFDLIISDMYDGRTKNC 137 (299)
T ss_dssp --TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-SSSEEEES-GGGEE-ESS-EEEEEE----TTS-SS
T ss_pred eccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhccccCCceeccccccC-CCCcccEEEEeccccccccc
Confidence 3678999999999753 2 223444 343 25555666543 3346777777765 3679999999521
Q ss_pred hhhh-CH----HHHHHHHHHhcccCcEEEEEEecCC-cccHHHHHHHhcccc
Q 028410 158 AEAL-FP----SRFVGEMERTVKIGGVCMVLMEECA-GREIKQIVELFRTSS 203 (209)
Q Consensus 158 ~~~~-~~----~~~l~~~~r~LkpgG~lil~~~~~~-~~~~~~~~~l~~~~~ 203 (209)
...- .. .-+..-+...|+-||.+.+=+-+.. +.+..++...|..+.
T Consensus 138 ~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~Lyel~~~F~~wt 189 (299)
T PF06460_consen 138 DGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSWNAQLYELMGYFSWWT 189 (299)
T ss_dssp -S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HHHHHHHTTEEEEE
T ss_pred ccccCCccccHHHHHHHHHhhhhcCceEEEEeecccccHHHHHHHhhcccEE
Confidence 1111 12 3344566788889999888776643 356666666665443
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=83.82 E-value=0.81 Score=36.41 Aligned_cols=53 Identities=8% Similarity=-0.033 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHh-c--CCceEEEecCCCCCCc
Q 028410 81 YAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNS-I--GVADVTGVELMDSLPL 133 (209)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~-~--~~~~v~~vD~s~~~~~ 133 (209)
.++++++-+....-+.+..+.|-+||+|+....+.- . ....|+|.|+++++++
T Consensus 36 AsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~ 91 (246)
T PF11599_consen 36 ASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALE 91 (246)
T ss_dssp HHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHH
T ss_pred HHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHH
Confidence 445555544444447788999999999999887765 2 3468999999999664
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=83.77 E-value=3 Score=35.24 Aligned_cols=107 Identities=17% Similarity=0.144 Sum_probs=69.9
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc----------EEEcCCCCCCCC---CCceeeEEccc------
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------VSRADPHNLPFF---DEAFDVAFTAH------ 156 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------~~~~d~~~~~~~---~~~fD~i~~~~------ 156 (209)
...+++|+-||-|.....+.+.|+.-+.++|+++.++. ++..|+...... ...+|+++...
T Consensus 2 ~~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS 81 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFS 81 (328)
T ss_pred CCceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchh
Confidence 35689999999999998888888878999999998554 445555543321 12789999741
Q ss_pred c---hhhh-CH----HHHHHHHHHhcccCcEEEEEEecCC-----cccHHHHHHHhccccc
Q 028410 157 L---AEAL-FP----SRFVGEMERTVKIGGVCMVLMEECA-----GREIKQIVELFRTSSF 204 (209)
Q Consensus 157 ~---~~~~-~~----~~~l~~~~r~LkpgG~lil~~~~~~-----~~~~~~~~~l~~~~~~ 204 (209)
+ -.-. |+ .--+.++.+.++| .+++..+..+ ...+..+.+-|+..|+
T Consensus 82 ~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY 140 (328)
T COG0270 82 IAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLSSKGQTFDEIKKELEELGY 140 (328)
T ss_pred hcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHhcCchHHHHHHHHHHHcCC
Confidence 0 1111 33 2344666777788 5555555543 2356677777777776
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=83.32 E-value=6.2 Score=33.10 Aligned_cols=85 Identities=16% Similarity=0.060 Sum_probs=51.2
Q ss_pred ccCCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCCCCCCceeeEEcccchhhhC
Q 028410 92 SLLFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLPFFDEAFDVAFTAHLAEALF 162 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~~~~~~fD~i~~~~~~~~~~ 162 (209)
..++++.+||=.|+| .|..+..+++ .|. +|++++.+++..+. ...|..+. ..+.+|+++-... .
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~--~~~~~d~~i~~~~----~ 233 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAASAGGAYDT--PPEPLDAAILFAP----A 233 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCceecccccc--CcccceEEEECCC----c
Confidence 456889999999975 2334445555 465 78899888763331 11111111 1235776653211 1
Q ss_pred HHHHHHHHHHhcccCcEEEEEE
Q 028410 163 PSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 163 ~~~~l~~~~r~LkpgG~lil~~ 184 (209)
...+.+..+.|++||++++.-
T Consensus 234 -~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 234 -GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred -HHHHHHHHHhhCCCcEEEEEe
Confidence 246788889999999986653
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=83.17 E-value=2 Score=31.12 Aligned_cols=67 Identities=19% Similarity=0.305 Sum_probs=41.7
Q ss_pred CcEEEcCCCC-CCCCCCceeeEEcccchhhhCH----HHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 132 PLVSRADPHN-LPFFDEAFDVAFTAHLAEALFP----SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 132 ~~~~~~d~~~-~~~~~~~fD~i~~~~~~~~~~~----~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+.+..+|+.+ ++--+..||+|+...+.-..+| .++++++.+.++|||. +++.+. ...++.-+..+||
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~--l~Tys~----a~~Vr~~L~~aGF 104 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGT--LATYSS----AGAVRRALQQAGF 104 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEE--EEES------BHHHHHHHHHCTE
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcE--EEEeec----hHHHHHHHHHcCC
Confidence 3466777654 3322478999998654433344 8899999999999998 555543 2347777777777
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=82.92 E-value=8.3 Score=30.31 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=58.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc----C-CceEEEecCCCCCC----------cEEEcCCCCCC-------CCCCceeeE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI----G-VADVTGVELMDSLP----------LVSRADPHNLP-------FFDEAFDVA 152 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~----~-~~~v~~vD~s~~~~----------~~~~~d~~~~~-------~~~~~fD~i 152 (209)
.++..|+++|.-.|..+...|.. | ..+|.++|++-... .+++++-.+.. ..++.--+.
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIf 147 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIF 147 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEE
Confidence 46789999999999888887762 3 23899999886643 26677665532 122222333
Q ss_pred Ecccchhhh-CHHHHHHHHHHhcccCcEEEEEE
Q 028410 153 FTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 153 ~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+|-...|+. .....++-..+.|..|-++++--
T Consensus 148 vilDsdHs~~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 148 VILDSDHSMEHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred EEecCCchHHHHHHHHHHhhhHhhcCceEEEec
Confidence 333444544 45666777788888898866543
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.89 E-value=1.8 Score=38.18 Aligned_cols=92 Identities=17% Similarity=0.181 Sum_probs=56.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc--C-CceEEEecCCCCCCcEEEcCC----------------CC--CCCC-CCceeeE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI--G-VADVTGVELMDSLPLVSRADP----------------HN--LPFF-DEAFDVA 152 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~--~-~~~v~~vD~s~~~~~~~~~d~----------------~~--~~~~-~~~fD~i 152 (209)
.....+.|+|.|.|.-...+... + ...++.||.+..|......+. .+ +|.. .+.||++
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 44577888988877655554441 2 457899999988665221111 11 3332 3559999
Q ss_pred Ecccchhhh-CH---HHHHHHHH-HhcccCcEEEEEEec
Q 028410 153 FTAHLAEAL-FP---SRFVGEME-RTVKIGGVCMVLMEE 186 (209)
Q Consensus 153 ~~~~~~~~~-~~---~~~l~~~~-r~LkpgG~lil~~~~ 186 (209)
++++..+++ .+ ....++.+ +..++||.++++-..
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence 999877766 32 34444444 556778887766554
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=82.77 E-value=3.5 Score=34.39 Aligned_cols=87 Identities=18% Similarity=0.126 Sum_probs=51.1
Q ss_pred ccCCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC--------CCCCceeeEEc
Q 028410 92 SLLFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAFDVAFT 154 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~i~~ 154 (209)
...+++.+||-.|+| .|..+..+++ .|...+++++.++...+. ...+..+.. .+.+.+|+++.
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld 242 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIE 242 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEE
Confidence 345778899997764 2555566666 464478888765542211 111111111 12356898876
Q ss_pred ccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 155 AHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
..- ....+.+..+.|+++|+++..
T Consensus 243 ~~g-----~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 243 AVG-----FEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred ccC-----CHHHHHHHHHHhhcCCEEEEE
Confidence 311 124678888999999997754
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.59 E-value=3.4 Score=35.73 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=30.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCC
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDS 130 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~ 130 (209)
.+-..+.|+|+|.|+.+..++- +|. .|.+||-|..
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~l-sV~aIegsq~ 187 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGL-SVKAIEGSQR 187 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCc-eEEEeccchH
Confidence 5667899999999999999987 676 9999998865
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=81.91 E-value=2.4 Score=36.71 Aligned_cols=51 Identities=14% Similarity=0.131 Sum_probs=37.3
Q ss_pred EEEcCCCCC--CCCCCceeeEEcccchhhhCH---HHHHHHHHHhcccCcEEEEEE
Q 028410 134 VSRADPHNL--PFFDEAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 134 ~~~~d~~~~--~~~~~~fD~i~~~~~~~~~~~---~~~l~~~~r~LkpgG~lil~~ 184 (209)
++.+++.+. ..+++++|.++..+...++++ .+.++++.+.++|||+++.=.
T Consensus 279 i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 279 IHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred EEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 444554442 246899999998877777744 778899999999999965543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=81.66 E-value=21 Score=31.50 Aligned_cols=57 Identities=18% Similarity=0.063 Sum_probs=38.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCC-------------CCcEEEcCCCCCCCCCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.++++||=.| |+|..+.++.+ .|+ +|+++|.... ..+++.+|+.+..+ ..+|.|+..
T Consensus 117 ~~~~kILVTG-atGfIGs~Lv~~Ll~~G~-~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l--~~~D~ViHl 190 (442)
T PLN02206 117 RKGLRVVVTG-GAGFVGSHLVDRLMARGD-SVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPIL--LEVDQIYHL 190 (442)
T ss_pred cCCCEEEEEC-cccHHHHHHHHHHHHCcC-EEEEEeCCCccchhhhhhhccCCceEEEECCccChhh--cCCCEEEEe
Confidence 4678999888 78999988876 365 8888874211 23456667655332 347888763
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-06
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 26/138 (18%)
Query: 66 HRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIG-VADVTG 124
+ + +Q + H +KVL G G + + A++T
Sbjct: 10 YSEREALRLSEQAETLEKLLHHDTV---YPPGAKVLEAGCGIGAQTVILAKNNPDAEITS 66
Query: 125 VELMDS-------------LPLVS--RADPHNLPFFDEAFDVAFTA----HLAEALFPSR 165
+++ + V +A+ +LPF D +FD F HL P
Sbjct: 67 IDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQS---PEE 123
Query: 166 FVGEMERTVKIGGVCMVL 183
+ +++ +K GG V+
Sbjct: 124 ALKSLKKVLKPGGTITVI 141
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 2e-06
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 21/102 (20%)
Query: 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADPH-----------NLPFF 145
S + + AG G +A + G V VE S+ + +A H NL
Sbjct: 35 GSVIADIGAGTGGYSVALANQG-LFVYAVEP--SIVMRQQAVVHPQVEWFTGYAENLALP 91
Query: 146 DEAFDVAFTA----HLAEALFPSRFVGEMERTVKIGGVCMVL 183
D++ D + H + + EM+R ++ G + ++
Sbjct: 92 DKSVDGVISILAIHHFSH---LEKSFQEMQRIIRDGTIVLLT 130
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 5e-06
Identities = 29/159 (18%), Positives = 59/159 (37%), Gaps = 28/159 (17%)
Query: 62 EKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVAD 121
+ + +W S S + F ++++ ++ +VL V G G+ + G
Sbjct: 28 NQNSQEMWDSGSRSTII---PFFEQYVKKEA------EVLDVGCGDGYGTYKLSRTG-YK 77
Query: 122 VTGVELMDSLPLVSRA--------------DPHNLPFFDEAFDVAFTAHLAEALF-PSRF 166
GV++ S ++ + D +LPF +E F+ + E P R
Sbjct: 78 AVGVDI--SEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLRA 135
Query: 167 VGEMERTVKIGG-VCMVLMEECAGREIKQIVELFRTSSF 204
+ E++R +K G C+ ++ A L+
Sbjct: 136 LNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVV 174
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 8e-06
Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 24/119 (20%)
Query: 83 HFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRA----- 137
F K+ +L VL AG ++ G+E+ S + +A
Sbjct: 13 RFLKYCNESNL---DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEI--SDLQLKKAENFSR 67
Query: 138 -----------DPHNLPFFDEAFDVAFTAHLAEALF---PSRFVGEMERTVKIGGVCMV 182
D LPF DE+ ++ + + E++R +K GG+ +
Sbjct: 68 ENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACI 126
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-05
Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 20/115 (17%)
Query: 86 KHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRA-------- 137
K L L S + + G G + M VTG++ +
Sbjct: 36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDF--LSGFIDIFNRNARQSG 93
Query: 138 ----------DPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMV 182
+LPF +E D+ ++ + R + E + +K GG V
Sbjct: 94 LQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAV 148
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-05
Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 21/120 (17%)
Query: 86 KHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRA-------- 137
K + + L + +K+ + G G + + +TG++L +
Sbjct: 36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDL--FPDFIEIFNENAVKAN 93
Query: 138 ----------DPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187
NLPF +E D+ ++ + R + E + +K GG + + E
Sbjct: 94 CADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGF-IAVSEAS 152
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 4e-05
Identities = 33/131 (25%), Positives = 47/131 (35%), Gaps = 31/131 (23%)
Query: 80 SYAHFFKHLQGKSL--------LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVEL---- 127
Y H +G L L + +VL V+ G GH AF V V +L
Sbjct: 13 MYVTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDI 71
Query: 128 ------------MDSLPLVSRADPHNLPFFDEAFDV---AFTAHLAEALFPSRFVGEMER 172
+ V + D +PF DE F + AH P+ FV E R
Sbjct: 72 LKVARAFIEGNGHQQVEYV-QGDAEQMPFTDERFHIVTCRIAAHHFPN--PASFVSEAYR 128
Query: 173 TVKIGGVCMVL 183
+K GG +++
Sbjct: 129 VLKKGGQLLLV 139
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 5e-05
Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 4/103 (3%)
Query: 103 VSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALF 162
G + + V +L P V+ D +P DE+ DVA
Sbjct: 74 FGCGDCRLASSIRN----PVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLMGTN 129
Query: 163 PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205
F+ E R +K GG+ V +++ + F
Sbjct: 130 IRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFK 172
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 9e-05
Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 28/143 (19%)
Query: 60 PLEKKNHRLWSSKSWKQQVTSYAHFFKH--------LQGKSLLFNHSKVLCVSAGAGHEV 111
+ +H +W +++ V Y +F LQ L + + + G G
Sbjct: 5 KIHHHHHHMW--HIFERFVNEYERWFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGR-- 60
Query: 112 MAFNSIGVADVTGVELMDSLPLVSRA----------DPHNLPFFDEAFDVAFTAHLAEAL 161
++ + GVE S + A NLP DE+FD A +
Sbjct: 61 ---FAVPLKIKIGVEP--SERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFV 115
Query: 162 F-PSRFVGEMERTVKIGGVCMVL 183
P R + E R +K GG +V
Sbjct: 116 DDPERALKEAYRILKKGGYLIVG 138
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 1e-04
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 23/104 (22%)
Query: 99 KVLCVSAGAGHEVMAFNSIGVADVTGVEL----------------MDSLPLVSRADPHNL 142
+VL + AGAGH +AF+ V + GV+ ++++ + +L
Sbjct: 24 RVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVENVRFQ-QGTAESL 81
Query: 143 PFFDEAFDV---AFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183
PF D++FD+ + AH + V E+ R +K G +++
Sbjct: 82 PFPDDSFDIITCRYAAHHFSD--VRKAVREVARVLKQDGRFLLV 123
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 2e-04
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 18/101 (17%)
Query: 99 KVLCVSAGAGHEVMAFNSIGVADVTGVEL---M------------DSLPLVSRADPHNLP 143
L + G G + + G ++ M + +V +AD +P
Sbjct: 42 VFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAGVDRKVQVV-QADARAIP 99
Query: 144 FFDEAFDVAFTAHLAEALF-PSRFVGEMERTVKIGGVCMVL 183
DE+ HL + + + E R +K GG +
Sbjct: 100 LPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG 140
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 2e-04
Identities = 14/103 (13%), Positives = 32/103 (31%), Gaps = 19/103 (18%)
Query: 99 KVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSR----------------ADPHNL 142
+ + +G G +A + ++ + ++ D HN+
Sbjct: 46 TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI 105
Query: 143 PFFDEAFDVAFTAHLAEALFP--SRFVGEMERTVKIGGVCMVL 183
P D D+ + + + E+ R +K GG +
Sbjct: 106 PIEDNYADLIVSRGSVF-FWEDVATAFREIYRILKSGGKTYIG 147
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 3e-04
Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 22/101 (21%)
Query: 98 SKVLCVSAGAGHEVMAFNSIGVADVTGVEL---M--------DSLPLVSRADPHNLPFFD 146
+L V AG G+ + GVE M V RA LPF
Sbjct: 38 ESLLEVGAGTGYWLRRLPY---PQKVGVEPSEAMLAVGRRRAPEATWV-RAWGEALPFPG 93
Query: 147 EAFDVAFTA----HLAEALFPSRFVGEMERTVKIGGVCMVL 183
E+FDV + + R + E R ++ GG +V
Sbjct: 94 ESFDVVLLFTTLEFVED---VERVLLEARRVLRPGGALVVG 131
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 3e-04
Identities = 24/158 (15%), Positives = 48/158 (30%), Gaps = 24/158 (15%)
Query: 69 WSSKSWKQQVTSYAHFFKHLQGKSLLFNH-----SKVLCVSAGAGHEVMAFNSIGVADVT 123
S+++ Q+ + A + G++ L + +K+L G G + G DV
Sbjct: 14 AHSENYAQRWRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQG-HDVL 72
Query: 124 GVELMDSLPLVSRA------------DPHNLPFFDEAFDVAFTA----HLAEALFPSRFV 167
G +L L+ A D + FD+ +A +
Sbjct: 73 GTDL--DPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPAL 130
Query: 168 GEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205
+ R + G ++ G +E+
Sbjct: 131 ANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLE 168
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 38.4 bits (89), Expect = 6e-04
Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 27/130 (20%)
Query: 69 WSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELM 128
+S+ ++ ++ + K KVL ++ G G G +V GV++
Sbjct: 16 INSQEYRSRIETLEPLLMKYMKK-----RGKVLDLACGVGGFSFLLEDYG-FEVVGVDI- 68
Query: 129 DSLPLVSRA----------------DPHNLPFFDEAFDVAF---TAHLAEALFPSRFVGE 169
S ++ +A D L F D+ FD + E L ++ E
Sbjct: 69 -SEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKE 127
Query: 170 MERTVKIGGV 179
+ R +K G
Sbjct: 128 VRRVLKPSGK 137
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 209 | |||
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.79 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.74 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.73 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.72 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.72 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.72 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.72 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.72 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.71 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.71 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.71 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.71 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.71 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.71 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.71 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.71 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.7 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.7 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.7 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.7 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.7 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.7 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.69 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.69 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.69 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.68 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.68 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.68 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.68 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.68 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.67 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.67 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.67 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.66 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.66 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.66 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.66 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.65 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.65 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.64 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.64 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.64 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.64 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.64 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.63 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.63 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.63 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.63 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.63 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.62 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.62 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.62 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.61 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.61 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.61 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.61 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.6 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.6 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.6 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.6 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.59 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.59 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.59 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.59 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.59 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.59 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.58 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.58 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.58 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.58 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.58 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.58 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.57 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.57 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.57 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.57 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.57 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.56 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.56 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.56 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.56 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.55 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.55 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.55 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.54 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.54 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.53 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.53 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.53 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.53 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.53 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.52 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.52 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.52 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.52 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.51 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.51 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.51 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.51 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.51 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.51 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.5 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.5 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.5 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.49 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.49 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.49 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.49 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.49 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.48 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.47 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.47 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.47 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.47 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.47 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.47 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.47 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.46 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.46 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.46 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.46 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.46 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.46 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.46 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.46 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.45 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.45 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.45 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.45 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.44 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.44 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.44 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.44 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.44 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.44 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.44 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.43 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.43 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.43 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.43 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.43 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.42 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.42 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.42 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.42 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.41 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.41 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.41 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.41 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.4 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.4 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.4 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.4 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.39 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.39 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.39 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.38 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.37 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.37 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.37 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.36 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.36 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.35 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.35 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.35 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.34 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.34 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.33 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.33 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.32 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.32 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.32 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.32 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.32 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.31 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.31 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.31 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.3 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.3 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.29 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.29 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.29 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.29 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.28 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.28 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.27 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.27 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.27 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.27 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.27 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.27 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.26 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.25 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.25 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.24 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.24 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.23 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.23 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.23 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.23 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.23 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.23 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.23 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.21 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.21 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.2 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.2 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.19 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.19 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.18 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.18 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.17 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.17 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.17 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.16 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.14 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.13 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.13 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.13 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.12 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.12 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.12 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.12 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.11 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.11 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.11 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.1 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.1 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.1 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.1 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.09 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.09 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.08 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.08 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.08 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.07 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.05 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.05 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.04 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.04 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.03 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.03 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.01 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.01 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 99.01 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.0 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.99 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.92 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.87 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.87 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.83 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.81 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.81 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.77 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.77 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.76 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.71 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.71 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.71 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.7 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.68 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.67 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.66 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.66 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.65 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.63 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.6 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.56 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.53 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.52 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.5 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.47 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.46 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.45 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.44 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.4 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.39 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.39 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.34 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.34 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.34 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.32 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.31 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.28 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.23 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.21 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.19 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.19 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.17 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.09 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.04 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.95 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.92 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.85 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.77 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.34 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.16 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.99 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.92 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.78 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.89 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.7 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 95.63 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 95.59 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 94.9 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 94.87 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 94.81 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.63 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.55 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 94.48 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 94.42 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 94.42 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 94.21 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 94.1 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.08 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 94.02 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.0 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 93.89 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 93.83 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.78 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.75 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 93.67 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 93.61 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 93.57 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 93.51 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 93.28 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 93.17 | |
| 3trk_A | 324 | Nonstructural polyprotein; hydrolase; 2.40A {Chiku | 93.17 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 93.06 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 92.77 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 92.63 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 92.62 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 92.2 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 92.09 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 92.0 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 91.73 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 91.69 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 91.64 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 91.12 | |
| 4gua_A | 670 | Non-structural polyprotein; viral precursor polypr | 91.1 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 91.09 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 91.05 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 91.05 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 90.88 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 90.75 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 90.71 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.39 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 90.24 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 90.04 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 89.94 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 89.89 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 89.71 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 89.45 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 88.92 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 88.85 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 88.82 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 88.59 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 88.24 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 88.07 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 87.83 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 87.79 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 87.7 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 87.62 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 87.6 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 87.59 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 86.64 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 86.4 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 86.17 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 85.97 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 85.78 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 85.54 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 85.42 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 85.29 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 85.08 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 84.82 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 84.63 | |
| 2km1_A | 136 | Protein DRE2; yeast, antiapoptotic, protein bindin | 84.5 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 84.14 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 84.09 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 82.5 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 81.92 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 81.42 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 80.86 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 80.82 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 80.09 |
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-19 Score=145.14 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=83.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------cEEEcCCCCCCCCCCceeeEEcccchhhhCHHH
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------LVSRADPHNLPFFDEAFDVAFTAHLAEALFPSR 165 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~ 165 (209)
..+.+|||+|||+|..+..+++.+. +|+|+|+|+.|+ .++++|++++++++++||+|++..+.|+.++.+
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~~ 116 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLDR 116 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHHH
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHHH
Confidence 5567999999999999999999864 999999998755 388999999999999999999998888889999
Q ss_pred HHHHHHHhcccCcEEEEEEecC
Q 028410 166 FVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 166 ~l~~~~r~LkpgG~lil~~~~~ 187 (209)
+++++.|+|||||.+++.....
T Consensus 117 ~~~e~~rvLkpgG~l~~~~~~~ 138 (257)
T 4hg2_A 117 FWAELRRVARPGAVFAAVTYGL 138 (257)
T ss_dssp HHHHHHHHEEEEEEEEEEEECC
T ss_pred HHHHHHHHcCCCCEEEEEECCC
Confidence 9999999999999998887654
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=132.85 Aligned_cols=92 Identities=28% Similarity=0.437 Sum_probs=81.6
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC---------------CcEEEcCCCCCCCCCCceeeEEcccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
...++.+|||+|||+|..+..+++.+. +|+|+|+|+.+ +.+.++|+.++|+++++||+|+++.+
T Consensus 34 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~ 112 (260)
T 1vl5_A 34 ALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIA 112 (260)
T ss_dssp TCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhh
Confidence 446889999999999999999998754 99999999853 45889999999999999999999988
Q ss_pred hhhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 158 AEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 158 ~~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
.+++ ++..+++++.++|||||++++...
T Consensus 113 l~~~~d~~~~l~~~~r~LkpgG~l~~~~~ 141 (260)
T 1vl5_A 113 AHHFPNPASFVSEAYRVLKKGGQLLLVDN 141 (260)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hHhcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 8888 999999999999999999988743
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=130.41 Aligned_cols=113 Identities=18% Similarity=0.220 Sum_probs=97.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCC---------------CcEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
...++.+|||+|||+|..+..+++. +..+++|+|+|+.+ +.+..+|+.++++++++||+|++.
T Consensus 34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 113 (219)
T 3dh0_A 34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMA 113 (219)
T ss_dssp TCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEE
T ss_pred CCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEee
Confidence 4578899999999999999999985 34699999999863 458899999999999999999999
Q ss_pred cchhhh-CHHHHHHHHHHhcccCcEEEEEEecCC----------cccHHHHHHHhcccccc
Q 028410 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECA----------GREIKQIVELFRTSSFT 205 (209)
Q Consensus 156 ~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~----------~~~~~~~~~l~~~~~~~ 205 (209)
.+.++. ++..+++++.++|||||.+++...... .....++.+++.++||.
T Consensus 114 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 174 (219)
T 3dh0_A 114 FTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIR 174 (219)
T ss_dssp SCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCE
T ss_pred hhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCE
Confidence 998888 899999999999999999998864422 24578889999999884
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.6e-18 Score=131.73 Aligned_cols=91 Identities=15% Similarity=0.169 Sum_probs=80.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
..+++ +|||+|||+|..+..+++.+..+++|+|+++.+ +.+.++|+.++++++++||+|++..
T Consensus 41 ~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 119 (219)
T 3dlc_A 41 GITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRG 119 (219)
T ss_dssp CCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEES
T ss_pred CCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECc
Confidence 44555 999999999999999998644599999999753 4588999999999999999999999
Q ss_pred chhhh-CHHHHHHHHHHhcccCcEEEEEE
Q 028410 157 LAEAL-FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 157 ~~~~~-~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+.++. ++..+++++.++|||||.+++..
T Consensus 120 ~l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 120 SVFFWEDVATAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp CGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHhhccCHHHHHHHHHHhCCCCCEEEEEe
Confidence 88888 99999999999999999988874
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=133.38 Aligned_cols=99 Identities=17% Similarity=0.213 Sum_probs=85.0
Q ss_pred HHHhcccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC----------CcEEEcCCCCCCCCCCceeeEEcc
Q 028410 87 HLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------PLVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 87 ~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~----------~~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.+.......++.+|||+|||+|..+..+++. +..+++|+|+|+.+ +.+..+|+.+++ ++++||+|+++
T Consensus 24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~ 102 (259)
T 2p35_A 24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYAN 102 (259)
T ss_dssp HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEE
T ss_pred HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEe
Confidence 3444445578899999999999999999985 44699999999764 458899999988 78999999999
Q ss_pred cchhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 156 ~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.+.+++ ++..+++++.++|||||.+++.+..
T Consensus 103 ~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 103 AVFQWVPDHLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp SCGGGSTTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred CchhhCCCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 999988 9999999999999999999988753
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-17 Score=131.15 Aligned_cols=93 Identities=16% Similarity=0.239 Sum_probs=83.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC------------CCcEEEcCCCCCCCCCCceeeEEcccchhh
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS------------LPLVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~------------~~~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 160 (209)
...++.+|||+|||+|..+..+++.+..+|+|+|+|+. .+.++++|+.++++++++||+|++..+.++
T Consensus 41 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 120 (253)
T 3g5l_A 41 PDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHY 120 (253)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGG
T ss_pred hccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhh
Confidence 34578999999999999999999986669999999985 345889999999998999999999999988
Q ss_pred h-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 161 L-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 161 ~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+ ++..+++++.++|||||.+++.+.
T Consensus 121 ~~~~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 121 IASFDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhHHHHHHHHHHHcCCCcEEEEEeC
Confidence 8 999999999999999999998753
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.7e-17 Score=132.15 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=95.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
.+.++.+|||+|||+|..+..+++.+..+|+|+|+|+.+ +.++++|+.++++++++||+|++..
T Consensus 43 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 43 NLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 357899999999999999999999866699999999862 5689999999999899999999999
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEEecC------------------CcccHHHHHHHhcccccc
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEEC------------------AGREIKQIVELFRTSSFT 205 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~------------------~~~~~~~~~~l~~~~~~~ 205 (209)
+.+++++..+++++.++|||||++++..... .......+.+++.++||.
T Consensus 123 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 189 (267)
T 3kkz_A 123 AIYNIGFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYL 189 (267)
T ss_dssp CGGGTCHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEE
T ss_pred CceecCHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCE
Confidence 8888899999999999999999999886431 112455677777888774
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-17 Score=131.03 Aligned_cols=111 Identities=21% Similarity=0.322 Sum_probs=95.6
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC------------CcEEEcCCCCCCCCCCceeeEEcccchhhh
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL------------PLVSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~------------~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~ 161 (209)
+.++.+|||+|||+|..+..+++.+. +++|+|+++.+ +.++++|+.++++++++||+|++.++.+|+
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 36889999999999999999999865 99999999863 458899999999999999999999999988
Q ss_pred -CHHHHHHHHHHhcccCcEEEEEEecCCc-------------------ccHHHHHHHhcccccc
Q 028410 162 -FPSRFVGEMERTVKIGGVCMVLMEECAG-------------------REIKQIVELFRTSSFT 205 (209)
Q Consensus 162 -~~~~~l~~~~r~LkpgG~lil~~~~~~~-------------------~~~~~~~~l~~~~~~~ 205 (209)
++..+++++.++|||||.+++.+..... .....+.+++.++||.
T Consensus 130 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 193 (242)
T 3l8d_A 130 EEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFK 193 (242)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEE
T ss_pred cCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCE
Confidence 9999999999999999999998754321 3446788888888884
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.5e-17 Score=133.86 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=95.4
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEccc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
+.++.+|||+|||+|..+..+++. +. +|+|+|+++.+ +.++.+|+.++++++++||+|++..
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 193 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNE 193 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEES
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECC
Confidence 678999999999999999999986 64 99999999863 4588999999999999999999999
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEEecCCc--------------------ccHHHHHHHhcccccc
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAG--------------------REIKQIVELFRTSSFT 205 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~--------------------~~~~~~~~l~~~~~~~ 205 (209)
+.++.++..+++++.++|||||++++....... .....+.++++++||.
T Consensus 194 ~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~ 262 (312)
T 3vc1_A 194 STMYVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLV 262 (312)
T ss_dssp CGGGSCHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEE
T ss_pred chhhCCHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCE
Confidence 988889999999999999999999988754322 2456677888888884
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.5e-17 Score=130.55 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=94.9
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
.+.++.+|||+|||+|..+..+++.+..+|+|+|+|+.+ +.++++|+.++++++++||+|++..
T Consensus 43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 43 ELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence 457889999999999999999999643499999999863 5588999999999999999999998
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEEecC------------------CcccHHHHHHHhcccccc
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEEC------------------AGREIKQIVELFRTSSFT 205 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~------------------~~~~~~~~~~l~~~~~~~ 205 (209)
+.++.++..+++++.++|||||++++..... .......+.+++...||.
T Consensus 123 ~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 189 (257)
T 3f4k_A 123 AIYNIGFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYT 189 (257)
T ss_dssp CSCCCCHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEE
T ss_pred hHhhcCHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCe
Confidence 8888899999999999999999999887431 122456677788888874
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-17 Score=129.21 Aligned_cols=108 Identities=14% Similarity=0.145 Sum_probs=95.0
Q ss_pred CCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------CcEEEcCCCCCCCCCCceeeEEcccchhhh---CH
Q 028410 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------PLVSRADPHNLPFFDEAFDVAFTAHLAEAL---FP 163 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~---~~ 163 (209)
+.+|||+|||+|..+..+++.+. +++|+|+|+.+ +.++++|+.++++++++||+|++.++.+++ ++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 120 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGEL 120 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTH
T ss_pred CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHH
Confidence 88999999999999999999865 99999999874 458899999999989999999999888877 78
Q ss_pred HHHHHHHHHhcccCcEEEEEEecCCc-------------ccHHHHHHHhcccccc
Q 028410 164 SRFVGEMERTVKIGGVCMVLMEECAG-------------REIKQIVELFRTSSFT 205 (209)
Q Consensus 164 ~~~l~~~~r~LkpgG~lil~~~~~~~-------------~~~~~~~~l~~~~~~~ 205 (209)
..+++++.++|||||.+++.+..... ....++.+++.++||.
T Consensus 121 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 175 (203)
T 3h2b_A 121 PDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQ 175 (203)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCc
Confidence 99999999999999999998765432 4678899999999884
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-16 Score=126.94 Aligned_cols=92 Identities=25% Similarity=0.374 Sum_probs=82.8
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC---------------CcEEEcCCCCCCCCCCceeeEEcccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
.++++.+|||+|||+|..+..+++.+. +++|+|+++.+ +.+.++|+.++++++++||+|++.++
T Consensus 18 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 96 (239)
T 1xxl_A 18 ECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYA 96 (239)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred CcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCc
Confidence 568899999999999999999998754 99999999863 45789999999999999999999988
Q ss_pred hhhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 158 AEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 158 ~~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
.++. ++..++.++.++|||||.+++...
T Consensus 97 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 97 AHHFSDVRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhccCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 8888 999999999999999999988754
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=9.9e-17 Score=128.85 Aligned_cols=120 Identities=18% Similarity=0.264 Sum_probs=98.3
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCC-------------CCcEEEcCCCCCCCCCCcee
Q 028410 85 FKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFD 150 (209)
Q Consensus 85 ~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD 150 (209)
...+.....+.++.+|||+|||+|..+..+++. + .+|+|+|+|+. .+.++++|+.++++++++||
T Consensus 44 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 122 (266)
T 3ujc_A 44 TKKILSDIELNENSKVLDIGSGLGGGCMYINEKYG-AHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFD 122 (266)
T ss_dssp HHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEE
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEE
Confidence 344444445688999999999999999999985 5 49999999985 34578999999999999999
Q ss_pred eEEcccchhhh---CHHHHHHHHHHhcccCcEEEEEEecCC-------------------cccHHHHHHHhcccccc
Q 028410 151 VAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEECA-------------------GREIKQIVELFRTSSFT 205 (209)
Q Consensus 151 ~i~~~~~~~~~---~~~~~l~~~~r~LkpgG~lil~~~~~~-------------------~~~~~~~~~l~~~~~~~ 205 (209)
+|++.++.+|+ ++..+++++.++|||||.+++...... ......+.+++..+||.
T Consensus 123 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 199 (266)
T 3ujc_A 123 LIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFK 199 (266)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCE
T ss_pred EEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCe
Confidence 99999888876 678999999999999999998874322 23566777888888873
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.3e-17 Score=127.12 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=88.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC---------------------------CcEEEcCCCCCCCC
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------------------PLVSRADPHNLPFF 145 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~---------------------------~~~~~~d~~~~~~~ 145 (209)
.+.++.+|||+|||+|..+..+++.|. +|+|+|+|+.| +.++++|+.+++++
T Consensus 19 ~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 19 NVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred ccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 456889999999999999999999876 99999999753 34788999999876
Q ss_pred C-CceeeEEcccchhhhC---HHHHHHHHHHhcccCcEEEEEEecCC---------cccHHHHHHHhccccc
Q 028410 146 D-EAFDVAFTAHLAEALF---PSRFVGEMERTVKIGGVCMVLMEECA---------GREIKQIVELFRTSSF 204 (209)
Q Consensus 146 ~-~~fD~i~~~~~~~~~~---~~~~l~~~~r~LkpgG~lil~~~~~~---------~~~~~~~~~l~~~~~~ 204 (209)
+ ++||+|++..+.+++. ...+++++.|+|||||++++++...+ .....++.++|.. +|
T Consensus 98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf 168 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NW 168 (203)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SE
T ss_pred cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-Cc
Confidence 5 8999999987777663 35689999999999998555543321 1356788888887 66
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-17 Score=130.34 Aligned_cols=90 Identities=14% Similarity=0.162 Sum_probs=80.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-----------CcEEEcCCCCCCCCCCceeeEEcccchhhh-C
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-----------PLVSRADPHNLPFFDEAFDVAFTAHLAEAL-F 162 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~-----------~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~ 162 (209)
.++.+|||+|||+|..+..+++.+. +|+|+|+|+.+ +.++++|+.++ +++++||+|++.++.+|+ +
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhcC
Confidence 4678999999999999999999765 99999999873 46888998887 468899999999999999 9
Q ss_pred HHHHHHHHH-HhcccCcEEEEEEec
Q 028410 163 PSRFVGEME-RTVKIGGVCMVLMEE 186 (209)
Q Consensus 163 ~~~~l~~~~-r~LkpgG~lil~~~~ 186 (209)
+..+++++. ++|||||++++.+..
T Consensus 119 ~~~~l~~~~~~~LkpgG~l~i~~~~ 143 (250)
T 2p7i_A 119 PVALLKRINDDWLAEGGRLFLVCPN 143 (250)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 999999999 999999999998754
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.71 E-value=7.5e-17 Score=129.20 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=93.3
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.+.++.+|||+|||+|..+..+++. + .+++|+|+|+.+ +.+.++|+.++++ +++||+|++.
T Consensus 33 ~~~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~~~ 110 (256)
T 1nkv_A 33 RMKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVAACV 110 (256)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEEEEE
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEEEEC
Confidence 5688999999999999999999984 4 499999999853 5588999999887 8899999999
Q ss_pred cchhhh-CHHHHHHHHHHhcccCcEEEEEEecC-------------------CcccHHHHHHHhcccccc
Q 028410 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEEC-------------------AGREIKQIVELFRTSSFT 205 (209)
Q Consensus 156 ~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~-------------------~~~~~~~~~~l~~~~~~~ 205 (209)
.+.++. ++..+++++.++|||||.+++..... .......+.+++..+||.
T Consensus 111 ~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 180 (256)
T 1nkv_A 111 GATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYD 180 (256)
T ss_dssp SCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBC
T ss_pred CChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCe
Confidence 888888 89999999999999999998875431 122446778888888884
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.9e-17 Score=126.37 Aligned_cols=107 Identities=20% Similarity=0.184 Sum_probs=95.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcEEEcCCCCCCCCCCceeeEEcccchhhhCHHHHHHHHHHhc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTV 174 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~L 174 (209)
.++.+|||+|||+|..+..++ .+++|+|+++..+.+.++|+.++++++++||+|++..+.++.++..+++++.++|
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L 141 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVL 141 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCSSTTEEESCTTSCSCCTTCEEEEEEESCCCSSCHHHHHHHHHHHE
T ss_pred CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCCCceEEEeccccCCCCCCCEeEEEEehhccccCHHHHHHHHHHhC
Confidence 678899999999999988773 4999999999999999999999999999999999988776558999999999999
Q ss_pred ccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 175 KIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 175 kpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
||||.+++............+.+++..+||.
T Consensus 142 ~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~ 172 (215)
T 2zfu_A 142 KPGGLLKVAEVSSRFEDVRTFLRAVTKLGFK 172 (215)
T ss_dssp EEEEEEEEEECGGGCSCHHHHHHHHHHTTEE
T ss_pred CCCeEEEEEEcCCCCCCHHHHHHHHHHCCCE
Confidence 9999999887665555788899999999884
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=131.38 Aligned_cols=112 Identities=16% Similarity=0.135 Sum_probs=94.0
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.+.++.+|||+|||+|..+..+++. +. +++|+|+|+.+ +.+..+|+.++|+++++||+|++.
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 157 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQ 157 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEec
Confidence 5578899999999999999999985 65 99999999864 458899999999999999999999
Q ss_pred cchhhh-CHHHHHHHHHHhcccCcEEEEEEecCC-------------------cccHHHHHHHhcccccc
Q 028410 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECA-------------------GREIKQIVELFRTSSFT 205 (209)
Q Consensus 156 ~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~-------------------~~~~~~~~~l~~~~~~~ 205 (209)
.+.+|+ ++..+++++.++|||||++++...... ......+.+++..+||.
T Consensus 158 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 227 (297)
T 2o57_A 158 DAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLV 227 (297)
T ss_dssp SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEE
T ss_pred chhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCe
Confidence 988888 899999999999999999998864321 11345566677777773
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-17 Score=132.54 Aligned_cols=92 Identities=21% Similarity=0.184 Sum_probs=82.1
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------cEEEcCCCCCCCCCCceeeEEcccchhhh-C
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------LVSRADPHNLPFFDEAFDVAFTAHLAEAL-F 162 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~ 162 (209)
...++.+|||+|||+|.++..+++.+ .+|+|+|+|+.++ .++++|+.++++++++||+|++.++.+++ +
T Consensus 31 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 109 (261)
T 3ege_A 31 NLPKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSH 109 (261)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHTTT-CEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESCGGGCSS
T ss_pred CCCCCCEEEEEcCcccHHHHHHHhCC-CEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcchHhhccC
Confidence 45788999999999999999999865 5999999998643 48899999999999999999999998888 9
Q ss_pred HHHHHHHHHHhcccCcEEEEEEec
Q 028410 163 PSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 163 ~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+..+++++.++|| ||++++....
T Consensus 110 ~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 110 LEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp HHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred HHHHHHHHHHHhC-CcEEEEEEcC
Confidence 9999999999999 9987777654
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=129.40 Aligned_cols=102 Identities=23% Similarity=0.290 Sum_probs=86.7
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCc
Q 028410 85 FKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEA 148 (209)
Q Consensus 85 ~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~ 148 (209)
...+.....+.++.+|||+|||+|..+..+++....+|+|+|+|+.+ +.+..+|+.++++++++
T Consensus 50 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 129 (273)
T 3bus_A 50 TDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDAS 129 (273)
T ss_dssp HHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCC
Confidence 33444444567899999999999999999998423599999999763 45889999999999999
Q ss_pred eeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 149 FDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 149 fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
||+|++..+.+|+ ++..+++++.++|||||++++....
T Consensus 130 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 168 (273)
T 3bus_A 130 FDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFV 168 (273)
T ss_dssp EEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred ccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEee
Confidence 9999999999988 8999999999999999999888643
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-17 Score=133.58 Aligned_cols=93 Identities=18% Similarity=0.247 Sum_probs=82.6
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC----------CCcEEEcCCCCCCCCCCceeeEEcccchhhh-
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL- 161 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~----------~~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~- 161 (209)
...++.+|||+|||+|..+..+++.+ .+|+|+|+|+. .+.+.++|+.++++ +++||+|++..+.+++
T Consensus 54 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~ 131 (279)
T 3ccf_A 54 NPQPGEFILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNAMLHWVK 131 (279)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEESCGGGCS
T ss_pred CCCCCCEEEEecCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcchhhhCc
Confidence 34678999999999999999999854 59999999987 35689999999987 6899999999999888
Q ss_pred CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 162 FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 162 ~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
++..+++++.++|||||++++.+...
T Consensus 132 d~~~~l~~~~~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 132 EPEAAIASIHQALKSGGRFVAEFGGK 157 (279)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 99999999999999999999887654
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-16 Score=129.37 Aligned_cols=90 Identities=14% Similarity=0.238 Sum_probs=80.6
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCCCC-CCCCceeeEEcccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLP-FFDEAFDVAFTAHL 157 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~-~~~~~fD~i~~~~~ 157 (209)
.++.+|||+|||+|..+..+++.+. +|+|+|+|+.+ +.++++|+.+++ +++++||+|++..+
T Consensus 67 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 67 PQKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 3468999999999999999999865 99999999853 348899999987 78899999999999
Q ss_pred hhhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 158 AEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 158 ~~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
.+++ ++..+++++.++|||||.+++.+.
T Consensus 146 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 146 LEWVADPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp GGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhcccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 9988 999999999999999999998875
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=124.98 Aligned_cols=90 Identities=14% Similarity=0.119 Sum_probs=79.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC-----------CCcEEEcCCCCCCCCCCceeeEEcccchhhh-C
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-----------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL-F 162 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~-----------~~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~ 162 (209)
.++.+|||+|||+|..+..+++.+. +++|+|+++. .+.+..+|+.+++++ ++||+|++.++.+++ +
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~ 121 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLTD 121 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGGSCH
T ss_pred cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcchhcCCh
Confidence 5789999999999999999999864 9999999986 456899999999887 999999999999988 5
Q ss_pred HHH--HHHHHHHhcccCcEEEEEEec
Q 028410 163 PSR--FVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 163 ~~~--~l~~~~r~LkpgG~lil~~~~ 186 (209)
+.. +++++.++|||||.+++....
T Consensus 122 ~~~~~~l~~~~~~LkpgG~l~i~~~~ 147 (220)
T 3hnr_A 122 DEKNVAIAKYSQLLNKGGKIVFADTI 147 (220)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 555 999999999999999988643
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=125.00 Aligned_cols=91 Identities=23% Similarity=0.391 Sum_probs=81.5
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC--------------------CcEEEcCCCCCCCCCCceeeEE
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------------PLVSRADPHNLPFFDEAFDVAF 153 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~--------------------~~~~~~d~~~~~~~~~~fD~i~ 153 (209)
++++.+|||+|||+|..+..+++.+. +++|+|+++.+ +.+..+|+.++++++++||+|+
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 37889999999999999999999865 99999999863 3578999999999999999999
Q ss_pred cccchhhh-CHH---HHHHHHHHhcccCcEEEEEEe
Q 028410 154 TAHLAEAL-FPS---RFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 154 ~~~~~~~~-~~~---~~l~~~~r~LkpgG~lil~~~ 185 (209)
+..+.+++ ++. .+++++.++|||||.+++...
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF 142 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence 99988888 777 899999999999999988854
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-16 Score=124.18 Aligned_cols=92 Identities=17% Similarity=0.116 Sum_probs=79.2
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC-------------CcEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL-------------PLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~-------------~~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
..++.+|||+|||+|..+..+++. +..+++|+|+|+.+ +.++++|+.+++++ ++||+|++..+.+
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~ 120 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSIH 120 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEESCGG
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeCccc
Confidence 467899999999999999999985 34699999999863 45889999999887 8999999999988
Q ss_pred hhC-HH--HHHHHHHHhcccCcEEEEEEec
Q 028410 160 ALF-PS--RFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 160 ~~~-~~--~~l~~~~r~LkpgG~lil~~~~ 186 (209)
++. +. .+++++.++|||||.+++....
T Consensus 121 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 150 (234)
T 3dtn_A 121 HLEDEDKKELYKRSYSILKESGIFINADLV 150 (234)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 884 33 5999999999999999988643
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-17 Score=130.03 Aligned_cols=112 Identities=14% Similarity=0.195 Sum_probs=93.1
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-------CcEEEcCCCCC--CCCCCceeeEEcccchhhh-C
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------PLVSRADPHNL--PFFDEAFDVAFTAHLAEAL-F 162 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~-------~~~~~~d~~~~--~~~~~~fD~i~~~~~~~~~-~ 162 (209)
.++++.+|||+|||+|.++..+++.+. +|+|+|+|+.+ +.++.+|+.+. ++++++||+|++.++.+|+ +
T Consensus 38 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~ 116 (240)
T 3dli_A 38 YFKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDP 116 (240)
T ss_dssp GTTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTTSEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCG
T ss_pred hhcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcceeeccHHHHhhhcCCCCeeEEEECCchhhCCc
Confidence 347889999999999999999998865 89999999875 45778888775 7889999999999998888 4
Q ss_pred H--HHHHHHHHHhcccCcEEEEEEecCCc----------------ccHHHHHHHhcccccc
Q 028410 163 P--SRFVGEMERTVKIGGVCMVLMEECAG----------------REIKQIVELFRTSSFT 205 (209)
Q Consensus 163 ~--~~~l~~~~r~LkpgG~lil~~~~~~~----------------~~~~~~~~l~~~~~~~ 205 (209)
+ ..+++++.++|||||++++.+..... .....+.+++.++||.
T Consensus 117 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 177 (240)
T 3dli_A 117 ERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFR 177 (240)
T ss_dssp GGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCe
Confidence 4 89999999999999999988765432 2446677788877774
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.4e-16 Score=121.46 Aligned_cols=110 Identities=17% Similarity=0.144 Sum_probs=92.4
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC-----------CCcEEEcCCCCCCCCCCceeeEEcccchhhh-
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-----------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL- 161 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~-----------~~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~- 161 (209)
..++.+|||+|||+|..+..+++.+. +++|+|+++. .+.++++|+.++ +++++||+|++..+.+++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~ 121 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVP 121 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhhcCC
Confidence 57788999999999999999999865 9999999985 345889999988 788999999999999888
Q ss_pred CH--HHHHHHHHHhcccCcEEEEEEecCC-------------------------------cccHHHHHHHhcccccc
Q 028410 162 FP--SRFVGEMERTVKIGGVCMVLMEECA-------------------------------GREIKQIVELFRTSSFT 205 (209)
Q Consensus 162 ~~--~~~l~~~~r~LkpgG~lil~~~~~~-------------------------------~~~~~~~~~l~~~~~~~ 205 (209)
++ ..+++++.++|||||.+++...... .....++.+++..+||.
T Consensus 122 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 198 (218)
T 3ou2_A 122 DDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWS 198 (218)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCE
Confidence 43 8999999999999999998865321 12556788888888884
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.68 E-value=9.9e-17 Score=128.24 Aligned_cols=119 Identities=14% Similarity=0.069 Sum_probs=96.4
Q ss_pred HHHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-------------CcEEEcCCCCCCCCCCceeeEE
Q 028410 87 HLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------PLVSRADPHNLPFFDEAFDVAF 153 (209)
Q Consensus 87 ~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~-------------~~~~~~d~~~~~~~~~~fD~i~ 153 (209)
.+.......++.+|||+|||+|..+..+++.+..+|+++|+|+.+ +.++++|+.++++++++||+|+
T Consensus 84 ~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 163 (254)
T 1xtp_A 84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIV 163 (254)
T ss_dssp HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEE
T ss_pred HHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEE
Confidence 333333456789999999999999999988655689999999874 3478899999998889999999
Q ss_pred cccchhhh---CHHHHHHHHHHhcccCcEEEEEEecCC-------------cccHHHHHHHhcccccc
Q 028410 154 TAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEECA-------------GREIKQIVELFRTSSFT 205 (209)
Q Consensus 154 ~~~~~~~~---~~~~~l~~~~r~LkpgG~lil~~~~~~-------------~~~~~~~~~l~~~~~~~ 205 (209)
+.++.+++ ++..+++++.++|||||.+++...... ......+.+++.++||.
T Consensus 164 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 231 (254)
T 1xtp_A 164 IQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVR 231 (254)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCC
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCE
Confidence 99888887 368999999999999999999875321 12457788899888884
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=128.32 Aligned_cols=96 Identities=23% Similarity=0.352 Sum_probs=84.3
Q ss_pred hcccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC---------------CcEEEcCCCCCCCCCCceeeEE
Q 028410 90 GKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAF 153 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~i~ 153 (209)
....+.++.+|||+|||+|..+..+++. +..+++|+|+++.+ +.+..+|+.++++++++||+|+
T Consensus 31 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 110 (276)
T 3mgg_A 31 HDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIF 110 (276)
T ss_dssp TTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEE
T ss_pred hcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEE
Confidence 3345678999999999999999999985 34699999999753 4588999999999999999999
Q ss_pred cccchhhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 154 TAHLAEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 154 ~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
++.+.+++ ++..+++++.++|||||.+++...
T Consensus 111 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 111 VCFVLEHLQSPEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp EESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EechhhhcCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 99999888 899999999999999999988764
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.7e-17 Score=125.74 Aligned_cols=110 Identities=18% Similarity=0.180 Sum_probs=94.5
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------cEEEcCCCCCCCCCCceeeEEcccchhhh---
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------LVSRADPHNLPFFDEAFDVAFTAHLAEAL--- 161 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------~~~~~d~~~~~~~~~~fD~i~~~~~~~~~--- 161 (209)
+.++.+|||+|||+|..+..+++.+. +++|+|+|+.++ .+..+|+.+++ ++++||+|++..+.+++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRLGRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTSCCEECCGGGCC-CCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhcCCceEEeeeccCC-CCCcEEEEEecCchhhcCHH
Confidence 46789999999999999999999865 999999998744 57889999888 78999999999888887
Q ss_pred CHHHHHHHHHHhcccCcEEEEEEecCC------------cccHHHHHHHhcccc-cc
Q 028410 162 FPSRFVGEMERTVKIGGVCMVLMEECA------------GREIKQIVELFRTSS-FT 205 (209)
Q Consensus 162 ~~~~~l~~~~r~LkpgG~lil~~~~~~------------~~~~~~~~~l~~~~~-~~ 205 (209)
++..+++++.++|||||++++.+.... ......+.+++..+| |.
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~ 175 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWA 175 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcE
Confidence 457899999999999999999876543 247788999999888 73
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.67 E-value=4.2e-16 Score=125.08 Aligned_cols=93 Identities=18% Similarity=0.218 Sum_probs=83.0
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC--------------CcEEEcCCCCCCCCCCceeeEEcccch
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PLVSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
.+.++.+|||+|||+|..+..+++.+ .+++|+|+|+.+ +.+.++|+.++++++++||+|++..+.
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 45788999999999999999999885 499999999753 457899999999989999999999998
Q ss_pred hhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 159 EAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 159 ~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+++ ++..+++++.++|||||.+++....
T Consensus 115 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (263)
T 2yqz_A 115 HLVPDWPKVLAEAIRVLKPGGALLEGWDQ 143 (263)
T ss_dssp GGCTTHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHCCCCcEEEEEecC
Confidence 888 8999999999999999999888544
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-16 Score=127.58 Aligned_cols=93 Identities=10% Similarity=0.152 Sum_probs=77.6
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhc---CCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeE
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSI---GVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVA 152 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~---~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i 152 (209)
..++++.+|||+|||+|..+..+++. +..+|+|+|+|+.|+ +++++|+.++|+ ++||+|
T Consensus 66 ~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d~v 143 (261)
T 4gek_A 66 RFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMV 143 (261)
T ss_dssp HHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC--CSEEEE
T ss_pred HhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc--cccccc
Confidence 34689999999999999999999873 224899999998754 378999999886 459999
Q ss_pred EcccchhhhCH---HHHHHHHHHhcccCcEEEEEEec
Q 028410 153 FTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 153 ~~~~~~~~~~~---~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+++.+.+++.+ ..++++++++|||||.+++....
T Consensus 144 ~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~ 180 (261)
T 4gek_A 144 VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 180 (261)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred eeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEecc
Confidence 99988888733 56899999999999999887543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-16 Score=126.07 Aligned_cols=92 Identities=18% Similarity=0.268 Sum_probs=82.0
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC------------CcEEEcCCCCCCCCCCceeeEEcccchhhh
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL------------PLVSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~------------~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~ 161 (209)
..++.+|||+|||+|..+..+++.+..+++|+|+|+.+ +.+.++|+.++++++++||+|++..+.++.
T Consensus 41 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 120 (243)
T 3bkw_A 41 EVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYV 120 (243)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGC
T ss_pred ccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEecccccc
Confidence 35788999999999999999998865699999999763 457889999988888999999999988888
Q ss_pred -CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 162 -FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 162 -~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
++..+++++.++|||||.+++.+.
T Consensus 121 ~~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 121 EDVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chHHHHHHHHHHhcCcCcEEEEEeC
Confidence 899999999999999999998763
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.1e-16 Score=120.53 Aligned_cols=90 Identities=28% Similarity=0.283 Sum_probs=80.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------CcEEEcCCCCCCCCCCceeeEEcccchhhh-CH
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------PLVSRADPHNLPFFDEAFDVAFTAHLAEAL-FP 163 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~ 163 (209)
.++.+|||+|||+|..+..+ +..+++|+|+|+.+ +.++++|+.++++++++||+|++.++.+++ ++
T Consensus 35 ~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 111 (211)
T 2gs9_A 35 PPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDV 111 (211)
T ss_dssp CCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSCH
T ss_pred CCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCCH
Confidence 48899999999999999887 44499999999864 458899999999999999999999998888 89
Q ss_pred HHHHHHHHHhcccCcEEEEEEecC
Q 028410 164 SRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 164 ~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
.++++++.++|||||.+++.+...
T Consensus 112 ~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 112 ERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECT
T ss_pred HHHHHHHHHHcCCCCEEEEEecCC
Confidence 999999999999999999987654
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-16 Score=128.63 Aligned_cols=112 Identities=14% Similarity=0.092 Sum_probs=88.3
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc----------------------------------------
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------------------------------- 133 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------------------------------------- 133 (209)
..++.+|||+|||+|.++..++..+..+|+|+|+|+.|++
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 4678899999999998888777776668999999975443
Q ss_pred -----EEEcCCCC-CCC---CCCceeeEEcccchhhh-----CHHHHHHHHHHhcccCcEEEEEEecCC-----------
Q 028410 134 -----VSRADPHN-LPF---FDEAFDVAFTAHLAEAL-----FPSRFVGEMERTVKIGGVCMVLMEECA----------- 188 (209)
Q Consensus 134 -----~~~~d~~~-~~~---~~~~fD~i~~~~~~~~~-----~~~~~l~~~~r~LkpgG~lil~~~~~~----------- 188 (209)
++++|+.+ .|+ ..++||+|+++.+.+++ +...+++++.++|||||.+++......
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~ 212 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 212 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEee
Confidence 67888887 343 36799999999887764 346899999999999999999863321
Q ss_pred --cccHHHHHHHhcccccc
Q 028410 189 --GREIKQIVELFRTSSFT 205 (209)
Q Consensus 189 --~~~~~~~~~l~~~~~~~ 205 (209)
.....++.+++..+||.
T Consensus 213 ~~~~~~~~l~~~l~~aGF~ 231 (263)
T 2a14_A 213 CVALEKGEVEQAVLDAGFD 231 (263)
T ss_dssp CCCCCHHHHHHHHHHTTEE
T ss_pred ccccCHHHHHHHHHHCCCE
Confidence 13667888999998883
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.66 E-value=4e-16 Score=119.33 Aligned_cols=111 Identities=17% Similarity=0.169 Sum_probs=96.2
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------CcEEEcCCCCCCCCCCceeeEEcc-cchhhh-
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------PLVSRADPHNLPFFDEAFDVAFTA-HLAEAL- 161 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------~~~~~~d~~~~~~~~~~fD~i~~~-~~~~~~- 161 (209)
+.++.+|||+|||+|..+..+++.+. +++++|+++.+ +.+..+|+.++++++++||+|+++ .+.++.
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred ccCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence 47889999999999999999999864 99999999863 568899999988888999999997 666665
Q ss_pred --CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 162 --FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 162 --~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
+...++.++.++|||||.+++............+.+++...||.
T Consensus 123 ~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~ 168 (195)
T 3cgg_A 123 EDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLE 168 (195)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEE
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCE
Confidence 34889999999999999999988877777888999999888873
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-16 Score=126.19 Aligned_cols=111 Identities=12% Similarity=0.164 Sum_probs=92.6
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC---------------CcEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
.++.+|||+|||+|..+..+++.+..+++++|+|+.+ +.++.+|+.++++++++||+|++.++.+
T Consensus 78 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 78 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 3689999999999999999988655699999999874 3478899988888888999999999888
Q ss_pred hh-CH--HHHHHHHHHhcccCcEEEEEEecCC------------cccHHHHHHHhcccccc
Q 028410 160 AL-FP--SRFVGEMERTVKIGGVCMVLMEECA------------GREIKQIVELFRTSSFT 205 (209)
Q Consensus 160 ~~-~~--~~~l~~~~r~LkpgG~lil~~~~~~------------~~~~~~~~~l~~~~~~~ 205 (209)
++ ++ ..+++++.++|||||.+++...... ......+.+++.++||.
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 218 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLS 218 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCC
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCe
Confidence 88 43 4899999999999999998764321 12578889999998883
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.6e-16 Score=122.09 Aligned_cols=110 Identities=19% Similarity=0.323 Sum_probs=93.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC--------cEEEcCCCC--CCCCCCceeeEEcccchhhh-CH
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------LVSRADPHN--LPFFDEAFDVAFTAHLAEAL-FP 163 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~--------~~~~~d~~~--~~~~~~~fD~i~~~~~~~~~-~~ 163 (209)
.++.+|||+|||+|..+..+++.| .+++++|+++.++ .+..+|+.+ .++++++||+|++.++.+++ ++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~ 109 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDP 109 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCH
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhcCCH
Confidence 678999999999999999999886 5999999998743 478899887 67778999999999998888 89
Q ss_pred HHHHHHHHHhcccCcEEEEEEecC---------------------------CcccHHHHHHHhcccccc
Q 028410 164 SRFVGEMERTVKIGGVCMVLMEEC---------------------------AGREIKQIVELFRTSSFT 205 (209)
Q Consensus 164 ~~~l~~~~r~LkpgG~lil~~~~~---------------------------~~~~~~~~~~l~~~~~~~ 205 (209)
..++.++.++|||||.+++.+... ......++.+++.++||.
T Consensus 110 ~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 178 (230)
T 3cc8_A 110 WAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYS 178 (230)
T ss_dssp HHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCe
Confidence 999999999999999999987542 113567778888888873
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-15 Score=123.38 Aligned_cols=91 Identities=20% Similarity=0.287 Sum_probs=79.5
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------cEEEcCCCCCCCCCCceeeEEcccchhhh--CH
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------LVSRADPHNLPFFDEAFDVAFTAHLAEAL--FP 163 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------~~~~~d~~~~~~~~~~fD~i~~~~~~~~~--~~ 163 (209)
.++.+|||+|||+|..+..+++.+. +++|+|+|+.++ .+.++|+.++++++++||+|++..+..+. ++
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~ 131 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENK 131 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCH
T ss_pred CCCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhccccH
Confidence 4788999999999999999999865 999999998754 27899999999989999999997644443 78
Q ss_pred HHHHHHHHHhcccCcEEEEEEec
Q 028410 164 SRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 164 ~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
..+++++.++|||||.+++.+..
T Consensus 132 ~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 132 DKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHHHHHcCCCeEEEEEeCC
Confidence 99999999999999999888765
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.64 E-value=9.4e-16 Score=130.55 Aligned_cols=112 Identities=17% Similarity=0.228 Sum_probs=94.4
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCC-----------------------CCcEEEcCCCCC------
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS-----------------------LPLVSRADPHNL------ 142 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~-----------------------~~~~~~~d~~~~------ 142 (209)
..++.+|||+|||+|..+..+++. +..+|+|+|+|+. .+.++++|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 467899999999999999999884 4569999999874 345789999987
Q ss_pred CCCCCceeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEecCC--------------------cccHHHHHHHhcc
Q 028410 143 PFFDEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECA--------------------GREIKQIVELFRT 201 (209)
Q Consensus 143 ~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~--------------------~~~~~~~~~l~~~ 201 (209)
++++++||+|+++.+.++. ++..+++++.++|||||++++.....+ ......+.+++.+
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 240 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAE 240 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHH
T ss_pred CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHH
Confidence 8999999999999998888 999999999999999999988753321 1345778889998
Q ss_pred cccc
Q 028410 202 SSFT 205 (209)
Q Consensus 202 ~~~~ 205 (209)
+||.
T Consensus 241 aGF~ 244 (383)
T 4fsd_A 241 AGFR 244 (383)
T ss_dssp TTCC
T ss_pred CCCc
Confidence 8884
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=7.8e-16 Score=125.66 Aligned_cols=94 Identities=15% Similarity=0.254 Sum_probs=80.9
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCCCCC-CCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPF-FDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~-~~~~fD~i~~~ 155 (209)
.+.++.+|||+|||+|..+..+++.+..+++|+|+|+.+ +.++++|+.+.++ ++++||+|++.
T Consensus 61 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 61 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred hCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 457889999999999999999988776699999999863 3578999999888 68899999998
Q ss_pred cchhh----h-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 156 HLAEA----L-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 156 ~~~~~----~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.+.++ . ++..+++++.++|||||.+++.+..
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 77655 3 6789999999999999999988754
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-16 Score=125.02 Aligned_cols=108 Identities=21% Similarity=0.284 Sum_probs=89.7
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
++.+|||+|||+|..+..+++.+ .+|+|+|+|+.+ +.+.++|+.+++ ++++||+|++..+.+
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~ 143 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPE-RFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFC 143 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTT-EEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTT
T ss_pred CCCCEEEeCCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhh
Confidence 34599999999999999998865 489999999863 348899999877 466999999988877
Q ss_pred hh---CHHHHHHHHHHhcccCcEEEEEEecCC--------cccHHHHHHHhcccccc
Q 028410 160 AL---FPSRFVGEMERTVKIGGVCMVLMEECA--------GREIKQIVELFRTSSFT 205 (209)
Q Consensus 160 ~~---~~~~~l~~~~r~LkpgG~lil~~~~~~--------~~~~~~~~~l~~~~~~~ 205 (209)
++ ++..+++++.++|||||.+++...... .....++.++|..+||.
T Consensus 144 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 200 (235)
T 3lcc_A 144 AIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFK 200 (235)
T ss_dssp TSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEE
T ss_pred cCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCe
Confidence 77 568999999999999999988765432 23578899999999884
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.9e-16 Score=121.01 Aligned_cols=91 Identities=16% Similarity=0.072 Sum_probs=79.4
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-------------CcEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------PLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~-------------~~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
...++.+|||+|||+|..+..+++.+ .+++|+|+++.+ +.++++|+.+++ ++++||+|+++++.+
T Consensus 48 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 125 (216)
T 3ofk_A 48 SSGAVSNGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVLY 125 (216)
T ss_dssp TTSSEEEEEEECCTTSHHHHHHGGGE-EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGG
T ss_pred ccCCCCcEEEEcCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHHH
Confidence 44677899999999999999999976 499999999863 358899999988 689999999999999
Q ss_pred hh-CH---HHHHHHHHHhcccCcEEEEEEe
Q 028410 160 AL-FP---SRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 160 ~~-~~---~~~l~~~~r~LkpgG~lil~~~ 185 (209)
|+ ++ ..+++++.++|||||.+++.+.
T Consensus 126 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 126 YLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 88 66 5779999999999999988764
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=8.7e-17 Score=138.08 Aligned_cols=120 Identities=10% Similarity=0.110 Sum_probs=94.3
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcE--------E-----EcCCCCCCCCCCceee
Q 028410 85 FKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLV--------S-----RADPHNLPFFDEAFDV 151 (209)
Q Consensus 85 ~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~--------~-----~~d~~~~~~~~~~fD~ 151 (209)
...+.....+.++.+|||+|||+|.++..+++.+. +++|+|+|+.+++. . ..+..++++++++||+
T Consensus 96 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~ 174 (416)
T 4e2x_A 96 ARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANV 174 (416)
T ss_dssp HHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEE
Confidence 33344444567889999999999999999999876 99999999875541 1 2223334566799999
Q ss_pred EEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEec-----------------CCcccHHHHHHHhcccccc
Q 028410 152 AFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE-----------------CAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 152 i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~-----------------~~~~~~~~~~~l~~~~~~~ 205 (209)
|++.++.+|+ ++..+++++.++|||||++++.+.. ....+...+.+++.++||.
T Consensus 175 I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~ 246 (416)
T 4e2x_A 175 IYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFE 246 (416)
T ss_dssp EEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEE
T ss_pred EEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCE
Confidence 9999999999 9999999999999999999987653 1234567888899888883
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.7e-16 Score=125.91 Aligned_cols=90 Identities=11% Similarity=0.160 Sum_probs=79.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHh--cCCceEEEecCCCC-----------------CCcEEEcCCCCCCCCC------Cce
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS--IGVADVTGVELMDS-----------------LPLVSRADPHNLPFFD------EAF 149 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~--~~~~~v~~vD~s~~-----------------~~~~~~~d~~~~~~~~------~~f 149 (209)
.++.+|||+|||+|..+..+++ .+..+|+|+|+|+. .+.++++|+.++++++ ++|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 6889999999999999999996 24569999999875 3458899999998877 899
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
|+|+++.+.+++++..+++++.++|||||.+++..
T Consensus 115 D~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i~~ 149 (299)
T 3g5t_A 115 DMITAVECAHWFDFEKFQRSAYANLRKDGTIAIWG 149 (299)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEEEe
Confidence 99999988888899999999999999999998843
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-15 Score=119.99 Aligned_cols=91 Identities=16% Similarity=0.089 Sum_probs=77.5
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCC--------------------CCcEEEcCCCCCCCCCCceeeEE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS--------------------LPLVSRADPHNLPFFDEAFDVAF 153 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~--------------------~~~~~~~d~~~~~~~~~~fD~i~ 153 (209)
.++.+|||+|||+|..+..+++. +..+++|+|+|+. .+.+.++|+...++++++||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 56789999999999999999985 3369999999986 24578899988888889999999
Q ss_pred cccchhhh-CH--HHHHHHHHHhcccCcEEEEEEe
Q 028410 154 TAHLAEAL-FP--SRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 154 ~~~~~~~~-~~--~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+..+.+++ ++ ..+++++.++|||||.++....
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 142 (219)
T 3jwg_A 108 VIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPN 142 (219)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred EHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccc
Confidence 99999988 44 5899999999999996655543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=122.64 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=76.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------CcEEEcCCCCCCCCCCceeeEEccc-chhhh--
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------PLVSRADPHNLPFFDEAFDVAFTAH-LAEAL-- 161 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------~~~~~~d~~~~~~~~~~fD~i~~~~-~~~~~-- 161 (209)
.++.+|||+|||+|..+..+++.+. +|+|+|+|+.+ +.++++|+.++++ +++||+|++.. +.+++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCC
Confidence 5678999999999999999999864 99999999874 4588999999887 78999999986 88777
Q ss_pred --CHHHHHHHHHHhcccCcEEEEE
Q 028410 162 --FPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 162 --~~~~~l~~~~r~LkpgG~lil~ 183 (209)
+...+++++.++|||||.+++.
T Consensus 127 ~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 127 QAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 3467899999999999999884
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.3e-16 Score=123.00 Aligned_cols=130 Identities=12% Similarity=0.144 Sum_probs=93.1
Q ss_pred HhhHhHHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCCc-------------EEEcC
Q 028410 74 WKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPL-------------VSRAD 138 (209)
Q Consensus 74 ~~~~~~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~~-------------~~~~d 138 (209)
|....+.+...+-.-++...++++++|||+|||+|.++..+++. +.++|+|+|+++.|++ .+.+|
T Consensus 55 w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d 134 (233)
T 4df3_A 55 WNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGD 134 (233)
T ss_dssp CCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESC
T ss_pred ECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEe
Confidence 54444444333333333446799999999999999999999994 4689999999998653 56666
Q ss_pred CCC---CCCCCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecC-------CcccHHHHHHHhccccc
Q 028410 139 PHN---LPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEEC-------AGREIKQIVELFRTSSF 204 (209)
Q Consensus 139 ~~~---~~~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~-------~~~~~~~~~~l~~~~~~ 204 (209)
..+ .++..+++|+|++. +.++-++..++.++.+.|||||+++++.... ....+....+.+...||
T Consensus 135 ~~~p~~~~~~~~~vDvVf~d-~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF 209 (233)
T 4df3_A 135 ARFPEKYRHLVEGVDGLYAD-VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGL 209 (233)
T ss_dssp TTCGGGGTTTCCCEEEEEEC-CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTC
T ss_pred ccCccccccccceEEEEEEe-ccCChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCC
Confidence 654 45667899999873 3333367889999999999999998876432 23344555566666666
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=123.90 Aligned_cols=93 Identities=15% Similarity=0.265 Sum_probs=81.4
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCCC--------------cEEEcCCCCCCCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSLP--------------LVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~~--------------~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
.+.++.+|||+|||+|..+..+++. + ..+|+|+|+|+.++ .+.++|+.++++ +++||+|++..
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~ 97 (284)
T 3gu3_A 19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIEL-NDKYDIAICHA 97 (284)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC-SSCEEEEEEES
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCc-CCCeeEEEECC
Confidence 4578899999999999999999984 4 35999999998743 488999999988 56999999999
Q ss_pred chhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 157 LAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 157 ~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+.++. ++..+++++.++|||||++++....
T Consensus 98 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 98 FLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 98888 9999999999999999999877654
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=5.3e-16 Score=126.90 Aligned_cols=111 Identities=15% Similarity=0.159 Sum_probs=85.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-----------------------------------------
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------------------------------- 133 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------------------------------------- 133 (209)
.++.+|||+|||+|.....++..+..+|+|+|+|+.+++
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 367899999999999655444433359999999998663
Q ss_pred ----EEEcCCCC-CCC-----CCCceeeEEcccchhh----h-CHHHHHHHHHHhcccCcEEEEEEecC-----------
Q 028410 134 ----VSRADPHN-LPF-----FDEAFDVAFTAHLAEA----L-FPSRFVGEMERTVKIGGVCMVLMEEC----------- 187 (209)
Q Consensus 134 ----~~~~d~~~-~~~-----~~~~fD~i~~~~~~~~----~-~~~~~l~~~~r~LkpgG~lil~~~~~----------- 187 (209)
++++|+.+ +|+ ++++||+|+++.+.++ . ++..+++++.++|||||++++.....
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~ 229 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL 229 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeee
Confidence 23338877 553 4567999999988888 5 68999999999999999998864211
Q ss_pred --CcccHHHHHHHhcccccc
Q 028410 188 --AGREIKQIVELFRTSSFT 205 (209)
Q Consensus 188 --~~~~~~~~~~l~~~~~~~ 205 (209)
.......+.++|..+||.
T Consensus 230 ~~~~~~~~~l~~~l~~aGf~ 249 (289)
T 2g72_A 230 TVVPVSEEEVREALVRSGYK 249 (289)
T ss_dssp ECCCCCHHHHHHHHHHTTEE
T ss_pred eeccCCHHHHHHHHHHcCCe
Confidence 134677888999998884
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=116.61 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=88.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC---------------CcEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
.++.+|||+|||+|..+..+++.+. +++++|+|+.+ +.+..+|+.++++ +++||+|++..+.+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~ 108 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLM 108 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGG
T ss_pred cCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhh
Confidence 5678999999999999999999865 99999999863 4578899998887 88999999998887
Q ss_pred hh---CHHHHHHHHHHhcccCcEEEEEEecC-----------CcccHHHHHHHhcccccc
Q 028410 160 AL---FPSRFVGEMERTVKIGGVCMVLMEEC-----------AGREIKQIVELFRTSSFT 205 (209)
Q Consensus 160 ~~---~~~~~l~~~~r~LkpgG~lil~~~~~-----------~~~~~~~~~~l~~~~~~~ 205 (209)
++ ++..+++++.++|||||.++++.... ......++.++|...+++
T Consensus 109 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~ 168 (199)
T 2xvm_A 109 FLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWERV 168 (199)
T ss_dssp GSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTTSEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcCCeEE
Confidence 77 56899999999999999987765322 123566777777764443
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.2e-16 Score=116.16 Aligned_cols=105 Identities=11% Similarity=0.112 Sum_probs=88.1
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------CcEEEcCCCCCCCCCCceeeEEcccchhhh-C
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------PLVSRADPHNLPFFDEAFDVAFTAHLAEAL-F 162 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~ 162 (209)
..++.+|||+|||+|..+..+++.+. +++|+|+++.+ +.+..+| .++++++||+|++..+.++. +
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~~ 90 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFHDMDD 90 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTTCSC
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchhcccC
Confidence 47888999999999999999999764 99999999864 4566777 77888999999999999888 9
Q ss_pred HHHHHHHHHHhcccCcEEEEEEecCC----------cccHHHHHHHhccccc
Q 028410 163 PSRFVGEMERTVKIGGVCMVLMEECA----------GREIKQIVELFRTSSF 204 (209)
Q Consensus 163 ~~~~l~~~~r~LkpgG~lil~~~~~~----------~~~~~~~~~l~~~~~~ 204 (209)
+..+++++.++|||||.+++...... .....++.+++. ||
T Consensus 91 ~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf 140 (170)
T 3i9f_A 91 KQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NF 140 (170)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TE
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--Cc
Confidence 99999999999999999998865432 134567777777 66
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4e-15 Score=121.29 Aligned_cols=98 Identities=21% Similarity=0.161 Sum_probs=81.1
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCC----------------CcEEEcCCCCCCCCCC
Q 028410 85 FKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSL----------------PLVSRADPHNLPFFDE 147 (209)
Q Consensus 85 ~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~ 147 (209)
+..+.....+.++.+|||+|||+|..+..+++ .|. +|+|+|+|+.+ +.+..+|+.+++ +
T Consensus 53 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~ 128 (287)
T 1kpg_A 53 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---E 128 (287)
T ss_dssp HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---C
T ss_pred HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---C
Confidence 33444444568899999999999999999995 665 99999999763 347788887665 8
Q ss_pred ceeeEEcccchhhh---CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 148 AFDVAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 148 ~fD~i~~~~~~~~~---~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+||+|++..+.+|+ ++..+++++.++|||||.+++....
T Consensus 129 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 170 (287)
T 1kpg_A 129 PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 170 (287)
T ss_dssp CCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred CeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 89999999888887 5799999999999999999988654
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.5e-16 Score=123.88 Aligned_cols=106 Identities=18% Similarity=0.136 Sum_probs=85.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC--------------------------------CcEEEcCCCCC
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------------------------PLVSRADPHNL 142 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~--------------------------------~~~~~~d~~~~ 142 (209)
.++.+|||+|||+|..+..|++.|. +|+|+|+|+.+ +.++++|+.++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 5788999999999999999999987 99999999762 23678899988
Q ss_pred CCCC-CceeeEEcccchhhh---CHHHHHHHHHHhcccCcEEEEEEecC---------CcccHHHHHHHhcc
Q 028410 143 PFFD-EAFDVAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEEC---------AGREIKQIVELFRT 201 (209)
Q Consensus 143 ~~~~-~~fD~i~~~~~~~~~---~~~~~l~~~~r~LkpgG~lil~~~~~---------~~~~~~~~~~l~~~ 201 (209)
++++ ++||+|++..+++++ +...+++++.++|||||++++++... -.....++.++|..
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~ 217 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT 217 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT
T ss_pred CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC
Confidence 8764 899999987776666 34679999999999999997554221 12456778888875
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=116.67 Aligned_cols=92 Identities=23% Similarity=0.295 Sum_probs=77.4
Q ss_pred CCCCCeEEEEcCCCChhHH-HHHhcCCceEEEecCCCCC--------------CcEEEcCCCCCCCCCCceeeEEcccch
Q 028410 94 LFNHSKVLCVSAGAGHEVM-AFNSIGVADVTGVELMDSL--------------PLVSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~-~la~~~~~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
..++.+|||+|||+|..+. .++..+. +++|+|+|+.+ +.+.++|+.++++++++||+|++..+.
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 3678999999999999854 4445554 99999999863 458899999999989999999998777
Q ss_pred hhh---CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 159 EAL---FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 159 ~~~---~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+|+ ++..+++++.++|||||.+++....
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 130 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLT 130 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 766 5689999999999999999988754
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.8e-16 Score=126.54 Aligned_cols=91 Identities=20% Similarity=0.250 Sum_probs=80.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-------------------EEEcCCCCCC---CCCCceeeE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-------------------VSRADPHNLP---FFDEAFDVA 152 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-------------------~~~~d~~~~~---~~~~~fD~i 152 (209)
.++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++ +..+|+.+++ +++++||+|
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V 134 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV 134 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEE
Confidence 5788999999999999999999876 9999999987553 5678887777 788999999
Q ss_pred Ecc-cchhhh-C-------HHHHHHHHHHhcccCcEEEEEEec
Q 028410 153 FTA-HLAEAL-F-------PSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 153 ~~~-~~~~~~-~-------~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
++. ++.+|+ + +..+++++.++|||||++++.+..
T Consensus 135 ~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 135 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 998 788888 8 899999999999999999887754
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-15 Score=126.08 Aligned_cols=91 Identities=19% Similarity=0.185 Sum_probs=79.1
Q ss_pred cCCCCCeEEEEcCCCChhHHHHH--hcCCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFN--SIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFT 154 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la--~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~ 154 (209)
.+.++.+|||+|||+|..+..++ ..+..+|+|+|+|+.+ +.++++|+.+++++ ++||+|++
T Consensus 115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~ 193 (305)
T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTS 193 (305)
T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEEC
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEE
Confidence 45889999999999999999995 3455699999999863 45889999999987 99999999
Q ss_pred ccchhhh-CHHH---HHHHHHHhcccCcEEEEEE
Q 028410 155 AHLAEAL-FPSR---FVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 155 ~~~~~~~-~~~~---~l~~~~r~LkpgG~lil~~ 184 (209)
+.+.++. ++.. +++++.++|||||++++..
T Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 194 NGLNIYEPDDARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp CSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 9888887 7755 7999999999999998876
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.7e-15 Score=122.60 Aligned_cols=99 Identities=16% Similarity=0.071 Sum_probs=82.4
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC----------------CcEEEcCCCCCCCCCC
Q 028410 85 FKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNLPFFDE 147 (209)
Q Consensus 85 ~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~ 147 (209)
+..+.....++++.+|||+|||+|..+..+++. | .+|+|+|+|+.+ +.+..+|+.++ ++
T Consensus 61 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~ 136 (302)
T 3hem_A 61 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DE 136 (302)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CC
T ss_pred HHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CC
Confidence 333444446688999999999999999999985 7 599999999874 34778888776 78
Q ss_pred ceeeEEcccchhhh-CH---------HHHHHHHHHhcccCcEEEEEEecC
Q 028410 148 AFDVAFTAHLAEAL-FP---------SRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 148 ~fD~i~~~~~~~~~-~~---------~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
+||+|++..+.+++ ++ ..+++++.++|||||++++.....
T Consensus 137 ~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 186 (302)
T 3hem_A 137 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI 186 (302)
T ss_dssp CCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEEC
T ss_pred CccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence 99999999888888 55 799999999999999999887653
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.1e-15 Score=116.80 Aligned_cols=106 Identities=24% Similarity=0.364 Sum_probs=89.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC--------CcEEEcCCCCCCCCCCceeeEEcccchhhh-CHHH
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------PLVSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSR 165 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~--------~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~~ 165 (209)
.++.+|||+|||+|..+..+++. +|+|+++.+ +.+..+|+.++++++++||+|++.++.+++ ++..
T Consensus 46 ~~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 120 (219)
T 1vlm_A 46 LPEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPER 120 (219)
T ss_dssp CCSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHH
T ss_pred CCCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEcchHhhccCHHH
Confidence 34889999999999999988764 899999874 457899999999888999999999998888 8999
Q ss_pred HHHHHHHhcccCcEEEEEEecCC---------------------cccHHHHHHHhcccccc
Q 028410 166 FVGEMERTVKIGGVCMVLMEECA---------------------GREIKQIVELFRTSSFT 205 (209)
Q Consensus 166 ~l~~~~r~LkpgG~lil~~~~~~---------------------~~~~~~~~~l~~~~~~~ 205 (209)
+++++.++|||||.+++...... .....++.+++.++||.
T Consensus 121 ~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 181 (219)
T 1vlm_A 121 ALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFE 181 (219)
T ss_dssp HHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCE
T ss_pred HHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCe
Confidence 99999999999999998865432 13567788888888873
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-15 Score=117.97 Aligned_cols=91 Identities=14% Similarity=0.072 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC--------------------CcEEEcCCCCCCCCCCceeeEE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL--------------------PLVSRADPHNLPFFDEAFDVAF 153 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~--------------------~~~~~~d~~~~~~~~~~fD~i~ 153 (209)
.++.+|||+|||+|.++..+++. +..+++|+|+|+.+ +.++++|+...+.++++||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 107 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT 107 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence 57789999999999999999985 44699999999863 4578899888887788999999
Q ss_pred cccchhhh-CH--HHHHHHHHHhcccCcEEEEEEe
Q 028410 154 TAHLAEAL-FP--SRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 154 ~~~~~~~~-~~--~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+..+.+++ ++ ..+++++.++|||||.+++...
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 108 VIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred eHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 99999988 44 7899999999999997666544
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-15 Score=119.20 Aligned_cols=92 Identities=17% Similarity=0.174 Sum_probs=71.6
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC-------------cEEEcCCCCC----CCCCCceeeEEc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP-------------LVSRADPHNL----PFFDEAFDVAFT 154 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~-------------~~~~~d~~~~----~~~~~~fD~i~~ 154 (209)
.++++.+|||+|||+|..+..+++. +.++|+|+|+|+.++ .++.+|+.+. +++ ++||+|++
T Consensus 54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~-~~fD~V~~ 132 (210)
T 1nt2_A 54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIV-EKVDLIYQ 132 (210)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTC-CCEEEEEE
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccc-cceeEEEE
Confidence 4578899999999999999999984 456999999998632 3567788763 444 89999999
Q ss_pred ccchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+ +..+.+...+++++.++|||||.+++.+..
T Consensus 133 ~-~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 163 (210)
T 1nt2_A 133 D-IAQKNQIEILKANAEFFLKEKGEVVIMVKA 163 (210)
T ss_dssp C-CCSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred e-ccChhHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 6 222223445689999999999999998643
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.59 E-value=8.3e-15 Score=114.97 Aligned_cols=92 Identities=21% Similarity=0.301 Sum_probs=79.4
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC--------------CCcEEEcCCCCCCCCCCceeeEEcccc--
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTAHL-- 157 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~i~~~~~-- 157 (209)
+.++.+|||+|||+|..+..+++.+. +++++|+|+. .+.++.+|+.++++++++||+|+++.+
T Consensus 36 ~~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 36 MKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred cCCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence 35688999999999999999998765 9999999985 356889999998888899999999877
Q ss_pred hhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 158 AEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 158 ~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.++. ++..+++++.++|||||.+++....
T Consensus 115 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 115 HFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp GCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 4444 6789999999999999999887654
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=112.13 Aligned_cols=106 Identities=12% Similarity=0.104 Sum_probs=80.6
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C--CceEEEecCCCC----CCcEEEcCCCCCC----------------------
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G--VADVTGVELMDS----LPLVSRADPHNLP---------------------- 143 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~--~~~v~~vD~s~~----~~~~~~~d~~~~~---------------------- 143 (209)
.++++.+|||+|||+|.++..+++. + ..+|+|+|+++. .+.++++|+.+.+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 98 (201)
T 2plw_A 19 FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKL 98 (201)
T ss_dssp CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCCCTTCEEEECCTTTTSSCCC-----------CHHHHHH
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCCCCCceEEEccccchhhhhhccccccccccchhhHHHH
Confidence 4578899999999999999999984 4 469999999986 3568899998876
Q ss_pred ---CCCCceeeEEcccchhh-----hCH-------HHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhc
Q 028410 144 ---FFDEAFDVAFTAHLAEA-----LFP-------SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (209)
Q Consensus 144 ---~~~~~fD~i~~~~~~~~-----~~~-------~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~ 200 (209)
+++++||+|+++...++ .+. ..+++++.++|||||.+++.+... .....+.+.++
T Consensus 99 ~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~--~~~~~l~~~l~ 168 (201)
T 2plw_A 99 KEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG--SQTNNLKTYLK 168 (201)
T ss_dssp HHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS--TTHHHHHHHHH
T ss_pred HhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC--CCHHHHHHHHH
Confidence 56789999998643322 122 247899999999999988866543 33445555443
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=8.3e-16 Score=126.03 Aligned_cols=92 Identities=9% Similarity=0.027 Sum_probs=70.3
Q ss_pred CCCCeEEEEcCCCChhHHHH----Hh-cCCceE--EEecCCCCCCc------------------EEEcCCCCCC------
Q 028410 95 FNHSKVLCVSAGAGHEVMAF----NS-IGVADV--TGVELMDSLPL------------------VSRADPHNLP------ 143 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~l----a~-~~~~~v--~~vD~s~~~~~------------------~~~~d~~~~~------ 143 (209)
.++.+|||||||+|..+..+ +. .+...+ +|+|+|++|++ +..+++.+++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 56789999999999766543 22 233444 99999987654 1223333332
Q ss_pred CCCCceeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 144 FFDEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 144 ~~~~~fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+++++||+|+++++.+|+ |+..++++++|+|||||++++....
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~ 174 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVS 174 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred cCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 568899999999999999 9999999999999999999988654
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.5e-15 Score=119.77 Aligned_cols=113 Identities=9% Similarity=0.046 Sum_probs=90.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-----------------------------------------
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------------------------------- 131 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------------------------------- 131 (209)
...++.+|||+|||+|..+..++..+..+|+|+|+|+.+
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 335678999999999999999888655699999999762
Q ss_pred ---C-cEEEcCCCCCC-CCC---CceeeEEcccchh----hh-CHHHHHHHHHHhcccCcEEEEEEecC-----------
Q 028410 132 ---P-LVSRADPHNLP-FFD---EAFDVAFTAHLAE----AL-FPSRFVGEMERTVKIGGVCMVLMEEC----------- 187 (209)
Q Consensus 132 ---~-~~~~~d~~~~~-~~~---~~fD~i~~~~~~~----~~-~~~~~l~~~~r~LkpgG~lil~~~~~----------- 187 (209)
+ .+.++|+.+.+ +++ ++||+|++..+.+ +. ++..+++++.++|||||.+++.....
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~ 212 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKF 212 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccc
Confidence 4 67788888854 355 8999999988777 44 67899999999999999998876321
Q ss_pred --CcccHHHHHHHhcccccc
Q 028410 188 --AGREIKQIVELFRTSSFT 205 (209)
Q Consensus 188 --~~~~~~~~~~l~~~~~~~ 205 (209)
.......+.++|..+||.
T Consensus 213 ~~~~~~~~~~~~~l~~aGf~ 232 (265)
T 2i62_A 213 SSLPLGWETVRDAVEEAGYT 232 (265)
T ss_dssp ECCCCCHHHHHHHHHHTTCE
T ss_pred cccccCHHHHHHHHHHCCCE
Confidence 123556888899888883
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-15 Score=119.25 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=89.5
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------cEEEcCCCCC---CCCC-CceeeEEcccchhhh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------LVSRADPHNL---PFFD-EAFDVAFTAHLAEAL 161 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------~~~~~d~~~~---~~~~-~~fD~i~~~~~~~~~ 161 (209)
.++.+|||+|||+|..+..+++.+. +++|+|+++.++ .+..+|+.++ ++.. ++||+|++.++.++.
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~~~ 129 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALLHQ 129 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCCSS
T ss_pred CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhhhh
Confidence 5679999999999999999999865 999999998754 4777777665 5444 459999999877744
Q ss_pred CHHHHHHHHHHhcccCcEEEEEEecCC-----------------------------cccHHHHHHHhcccccc
Q 028410 162 FPSRFVGEMERTVKIGGVCMVLMEECA-----------------------------GREIKQIVELFRTSSFT 205 (209)
Q Consensus 162 ~~~~~l~~~~r~LkpgG~lil~~~~~~-----------------------------~~~~~~~~~l~~~~~~~ 205 (209)
++..+++++.++|||||++++...... .....++.+++..+||.
T Consensus 130 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 202 (227)
T 3e8s_A 130 DIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLR 202 (227)
T ss_dssp CCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEE
T ss_pred hHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCe
Confidence 899999999999999999998875321 12678889999999984
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=120.54 Aligned_cols=100 Identities=16% Similarity=0.052 Sum_probs=82.6
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC----------------CcEEEcCCCCCCCCC
Q 028410 84 FFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNLPFFD 146 (209)
Q Consensus 84 ~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~ 146 (209)
.+..+.....+.++.+|||+|||+|..+..+++. +. +|+|+|+|+.+ +.+..+|+.+++
T Consensus 78 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--- 153 (318)
T 2fk8_A 78 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--- 153 (318)
T ss_dssp HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---
T ss_pred HHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---
Confidence 3444444445678999999999999999999985 75 99999999873 447788887764
Q ss_pred CceeeEEcccchhhh---CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 147 EAFDVAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 147 ~~fD~i~~~~~~~~~---~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
++||+|++..+.+++ ++..+++++.++|||||.+++.....
T Consensus 154 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 197 (318)
T 2fk8_A 154 EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS 197 (318)
T ss_dssp CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 789999999888877 57999999999999999999887653
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-15 Score=120.30 Aligned_cols=98 Identities=14% Similarity=0.037 Sum_probs=78.5
Q ss_pred HHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------EEEcCCCCCCC-----CCCceeeEE
Q 028410 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------VSRADPHNLPF-----FDEAFDVAF 153 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------~~~~d~~~~~~-----~~~~fD~i~ 153 (209)
+.....+.++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++ .+..++.+++. .+++||+|+
T Consensus 37 il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv 115 (261)
T 3iv6_A 37 DIFLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVL 115 (261)
T ss_dssp HHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEE
T ss_pred HHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEE
Confidence 33344568899999999999999999999875 9999999998775 34555555443 257999999
Q ss_pred cccchhhh---CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 154 TAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 154 ~~~~~~~~---~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
++.+.+++ +...+++++.++| |||++++.+...
T Consensus 116 ~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g 151 (261)
T 3iv6_A 116 NDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLG 151 (261)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBS
T ss_pred EhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccC
Confidence 99887766 3467999999999 999999888754
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.4e-14 Score=114.88 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=76.8
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCC------C----------------CcEEEcC---CCCCCCC
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS------L----------------PLVSRAD---PHNLPFF 145 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~------~----------------~~~~~~d---~~~~~~~ 145 (209)
.+.++.+|||+|||+|..+..+++. | ..+|+|+|+|+. + +.+..+| ...++++
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 119 (275)
T 3bkx_A 40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIA 119 (275)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGT
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCC
Confidence 5678999999999999999999985 3 269999999985 2 3467787 4556778
Q ss_pred CCceeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 146 DEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 146 ~~~fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+++||+|++.++.++. ++..+++.+.++++|||.+++....
T Consensus 120 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~ 161 (275)
T 3bkx_A 120 DQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWS 161 (275)
T ss_dssp TCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred CCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence 8999999999998888 7877777777777779999887543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=112.68 Aligned_cols=108 Identities=12% Similarity=0.078 Sum_probs=87.5
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
...++.+|||+|||+|..+..+++. +..+|+++|+|+.++ +++.+|+.+.....++||+|++..
T Consensus 37 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~ 116 (204)
T 3e05_A 37 RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGG 116 (204)
T ss_dssp TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESC
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECC
Confidence 5578899999999999999999985 456999999998733 477888866544457899999976
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
..+ ++..+++++.++|||||++++.... ......+.+.+++.+|
T Consensus 117 ~~~--~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 117 SGG--MLEEIIDAVDRRLKSEGVIVLNAVT--LDTLTKAVEFLEDHGY 160 (204)
T ss_dssp CTT--CHHHHHHHHHHHCCTTCEEEEEECB--HHHHHHHHHHHHHTTC
T ss_pred CCc--CHHHHHHHHHHhcCCCeEEEEEecc--cccHHHHHHHHHHCCC
Confidence 544 7899999999999999998876544 3467778888888876
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-15 Score=118.46 Aligned_cols=88 Identities=17% Similarity=0.227 Sum_probs=76.5
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC--------------CcEEEcCCCCCCCCCCceeeEEccc-chh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PLVSRADPHNLPFFDEAFDVAFTAH-LAE 159 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~fD~i~~~~-~~~ 159 (209)
.++.+|||+|||+|..+..+++.+. +++|+|+|+.+ +.+.++|+.+++++ ++||+|++.. +.+
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~ 113 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTN 113 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGG
T ss_pred CCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEcCcccc
Confidence 3778999999999999999999864 99999999863 45788999888876 8999999987 887
Q ss_pred hh----CHHHHHHHHHHhcccCcEEEEEE
Q 028410 160 AL----FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 160 ~~----~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
|+ ++..+++++.++|||||.+++.+
T Consensus 114 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 142 (246)
T 1y8c_A 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 77 45889999999999999998854
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.5e-15 Score=114.44 Aligned_cols=94 Identities=20% Similarity=0.279 Sum_probs=79.8
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-------------CcEEEcCCCCCCCCCCceeeEEcccchhh
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------PLVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~-------------~~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 160 (209)
+.++.+|||+|||+|..+..+++.+..+++++|+|+.+ +.+.++|+.++++++++||+|++..+.++
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 47889999999999999999999765599999999863 45889999999988899999998765433
Q ss_pred h----------------CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 161 L----------------FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 161 ~----------------~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
+ ++..+++++.++|||||.+++.....
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 2 45899999999999999988877653
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-15 Score=119.68 Aligned_cols=107 Identities=17% Similarity=0.112 Sum_probs=84.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCC---------------CcEEEcCCCCCCCC---CCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSL---------------PLVSRADPHNLPFF---DEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~---~~~fD~i~~~ 155 (209)
.++.+|||+|||+|..+..++. .+..+|+|+|+|+.+ +.++++|+.+++++ +++||+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 5788999999999999999996 344699999999853 44788888887654 6899999997
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
.+ .++..+++++.++|||||.+++........+...+.+.++..++
T Consensus 149 ~~---~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~ 194 (240)
T 1xdz_A 149 AV---ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGG 194 (240)
T ss_dssp CC---SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTE
T ss_pred cc---CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCC
Confidence 64 26899999999999999999887554444455667777777766
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-15 Score=121.48 Aligned_cols=92 Identities=8% Similarity=-0.046 Sum_probs=76.7
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC------------cEEEcCCCCCCCCC-----CceeeEEccc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP------------LVSRADPHNLPFFD-----EAFDVAFTAH 156 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~------------~~~~~d~~~~~~~~-----~~fD~i~~~~ 156 (209)
+.++.+|||+|||+|..+..+++.+. +|+|+|+|+.++ .++++|+.++++.. ..||+|+++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~ 132 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRT 132 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcc
Confidence 47889999999999999999999765 999999998744 47888988865432 3499999998
Q ss_pred chhhh---CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 157 LAEAL---FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 157 ~~~~~---~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+.+++ ++..+++++.++|||||++++....
T Consensus 133 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 165 (245)
T 3ggd_A 133 GFHHIPVEKRELLGQSLRILLGKQGAMYLIELG 165 (245)
T ss_dssp SSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred hhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 88877 3589999999999999998777654
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.57 E-value=4.8e-15 Score=114.62 Aligned_cols=104 Identities=14% Similarity=0.210 Sum_probs=84.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC--------------CcEEEcCCCCCCCCCCceeeEEcccchhh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PLVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 160 (209)
.++ +|||+|||+|..+..+++.+. +++|+|+|+.+ +.+.++|+.++++++++||+|++.....+
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 106 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLP 106 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECCCCC
T ss_pred CCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEhhcCC
Confidence 566 999999999999999999865 99999999864 34778999999888899999999643222
Q ss_pred h-CHHHHHHHHHHhcccCcEEEEEEecCC--------------cccHHHHHHHhc
Q 028410 161 L-FPSRFVGEMERTVKIGGVCMVLMEECA--------------GREIKQIVELFR 200 (209)
Q Consensus 161 ~-~~~~~l~~~~r~LkpgG~lil~~~~~~--------------~~~~~~~~~l~~ 200 (209)
. ++..+++++.++|||||.+++...... .....++.++|.
T Consensus 107 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 161 (202)
T 2kw5_A 107 SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP 161 (202)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc
Confidence 2 578999999999999999999875432 235566777776
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.8e-15 Score=120.37 Aligned_cols=110 Identities=17% Similarity=0.269 Sum_probs=89.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC--------------cEEEcCCCCCCCCCCceeeEEcccchhh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------------LVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~--------------~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 160 (209)
.++.+|||+|||+|..+..+++.+. +|+|+|+|+.++ .+.++|+.+.++ +++||+|+++.+.++
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMF 196 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGG
T ss_pred cCCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhh
Confidence 4789999999999999999999876 999999998743 478899988877 889999999988887
Q ss_pred hC---HHHHHHHHHHhcccCcEEEEEEecCC-----------cccHHHHHHHhccccccc
Q 028410 161 LF---PSRFVGEMERTVKIGGVCMVLMEECA-----------GREIKQIVELFRTSSFTE 206 (209)
Q Consensus 161 ~~---~~~~l~~~~r~LkpgG~lil~~~~~~-----------~~~~~~~~~l~~~~~~~~ 206 (209)
++ ...+++++.++|||||.++++..... .....++.++|...++++
T Consensus 197 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 256 (286)
T 3m70_A 197 LNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKDWEFLE 256 (286)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTTSEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcCCEEEE
Confidence 73 36899999999999999877654321 234556777777655543
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=119.32 Aligned_cols=90 Identities=20% Similarity=0.303 Sum_probs=75.9
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC------------------CcEEEcCCCCCCCCCCceeeEEcc-c
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL------------------PLVSRADPHNLPFFDEAFDVAFTA-H 156 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~------------------~~~~~~d~~~~~~~~~~fD~i~~~-~ 156 (209)
++.+|||+|||+|..+..+++.+. +|+|+|+|+.+ +.++++|+.++++ +++||+|++. .
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~ 159 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSG 159 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHH
T ss_pred CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCc
Confidence 445999999999999999999865 99999999863 4588999999987 7899999865 5
Q ss_pred chhhhC---HHHHHHHHHHhcccCcEEEEEEecC
Q 028410 157 LAEALF---PSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 157 ~~~~~~---~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
+.++.+ ...+++++.++|||||.+++.+...
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 193 (299)
T 3g2m_A 160 SINELDEADRRGLYASVREHLEPGGKFLLSLAMS 193 (299)
T ss_dssp HHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence 566555 4889999999999999999987553
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=7e-16 Score=122.63 Aligned_cols=91 Identities=15% Similarity=0.032 Sum_probs=74.0
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC--------------cEEEcCCCCC--CCCCCceeeEEc-cc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------------LVSRADPHNL--PFFDEAFDVAFT-AH 156 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~--------------~~~~~d~~~~--~~~~~~fD~i~~-~~ 156 (209)
..++.+|||+|||+|..+..+++.+..+|+|+|+|+.++ .++++|+.++ ++++++||+|++ .+
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 367899999999999999999886556999999998853 3778888887 888999999999 33
Q ss_pred chh----hh-CHHHHHHHHHHhcccCcEEEEEE
Q 028410 157 LAE----AL-FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 157 ~~~----~~-~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
... +. +...+++++.|+|||||+++++.
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 211 11 34578999999999999987664
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.5e-15 Score=111.60 Aligned_cols=105 Identities=15% Similarity=0.138 Sum_probs=85.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC------CcEEEcCCCCCCCCCCceeeEEcccchhhh-------
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL------PLVSRADPHNLPFFDEAFDVAFTAHLAEAL------- 161 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~------~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~------- 161 (209)
.++.+|||+|||+|..+..+++.+ +|+|+|+|+.+ +.++++|+.+ ++++++||+|+++...++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~~~~~ 98 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALESHRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDDPIIG 98 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHTCSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCCTTTB
T ss_pred CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhcccCCeEEECChhh-hcccCCCCEEEECCCCccCCcccccc
Confidence 456799999999999999999986 99999999874 4688999988 6667999999997554432
Q ss_pred ---CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 162 ---FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 162 ---~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
+...++.++.+.+ |||.+++.... ......+.+++++.+|.
T Consensus 99 ~~~~~~~~~~~~~~~l-pgG~l~~~~~~--~~~~~~l~~~l~~~gf~ 142 (170)
T 3q87_B 99 GGYLGREVIDRFVDAV-TVGMLYLLVIE--ANRPKEVLARLEERGYG 142 (170)
T ss_dssp CCGGGCHHHHHHHHHC-CSSEEEEEEEG--GGCHHHHHHHHHHTTCE
T ss_pred CCcchHHHHHHHHhhC-CCCEEEEEEec--CCCHHHHHHHHHHCCCc
Confidence 2367889999999 99998887755 35677888888888873
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=8.4e-16 Score=122.56 Aligned_cols=90 Identities=16% Similarity=0.018 Sum_probs=73.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCCC--CCCCCceeeEEcc---
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNL--PFFDEAFDVAFTA--- 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~~--~~~~~~fD~i~~~--- 155 (209)
.++.+|||||||+|..+..+++....++++||+|+.+++ ++.+|+.+. ++++++||.|+..
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~ 138 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 138 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeee
Confidence 788999999999999999999864459999999998654 566776553 5788999999753
Q ss_pred --cchhhh-CHHHHHHHHHHhcccCcEEEEEE
Q 028410 156 --HLAEAL-FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 156 --~~~~~~-~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
....+. ++..+++++.|+|||||+++++.
T Consensus 139 ~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 139 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 334444 78999999999999999987654
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.5e-14 Score=105.45 Aligned_cols=94 Identities=14% Similarity=0.097 Sum_probs=77.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCCC-----cEEEcCCCCCC--------CCCCceeeEEcccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSLP-----LVSRADPHNLP--------FFDEAFDVAFTAHL 157 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~~-----~~~~~d~~~~~--------~~~~~fD~i~~~~~ 157 (209)
...++.+|||+|||+|..+..+++. + ..+++++|+++ +. .+..+|+.+.+ +++++||+|+++..
T Consensus 19 ~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~ 97 (180)
T 1ej0_A 19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMA 97 (180)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccccCcEEEEEcccccchhhhhhhccCCCCceeEEEECCC
Confidence 3578899999999999999999985 3 36999999999 54 47888998876 77889999999755
Q ss_pred hhhh-CH-----------HHHHHHHHHhcccCcEEEEEEecC
Q 028410 158 AEAL-FP-----------SRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 158 ~~~~-~~-----------~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
.++. +. ..+++++.++|||||.+++.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 98 PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred ccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 4433 33 689999999999999988876653
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-15 Score=119.49 Aligned_cols=102 Identities=12% Similarity=0.153 Sum_probs=83.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------CcEEEcCC-CCCCCC-CCceeeEEcccchhhhC
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------PLVSRADP-HNLPFF-DEAFDVAFTAHLAEALF 162 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------~~~~~~d~-~~~~~~-~~~fD~i~~~~~~~~~~ 162 (209)
.++.+|||+|||+|..+..+++.+. +|+|+|+|+.+ +.++++|+ ..+|++ +++||+|+++ .+
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-----~~ 120 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-----RG 120 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE-----SC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC-----CC
Confidence 7889999999999999999999864 99999999874 45889999 568888 8999999996 35
Q ss_pred HHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 163 PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 163 ~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
+..+++++.++|||||.++... .......+.+.+.+++|.
T Consensus 121 ~~~~l~~~~~~LkpgG~l~~~~---~~~~~~~~~~~l~~~Gf~ 160 (226)
T 3m33_A 121 PTSVILRLPELAAPDAHFLYVG---PRLNVPEVPERLAAVGWD 160 (226)
T ss_dssp CSGGGGGHHHHEEEEEEEEEEE---SSSCCTHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHcCCCcEEEEeC---CcCCHHHHHHHHHHCCCe
Confidence 7788999999999999987222 234556677788877763
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5e-15 Score=113.07 Aligned_cols=93 Identities=13% Similarity=0.193 Sum_probs=72.0
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCCC-CCCCceeeEEcc-
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNLP-FFDEAFDVAFTA- 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~-~~~~~fD~i~~~- 155 (209)
.++++.+|||+|||+|..+..+++.+ .+|+|+|+|+.++ .+++.+..+++ +.+++||+|+++
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGLS-KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 45789999999999999999999984 5999999999754 36666666643 457899999886
Q ss_pred cchhh--------h-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 156 HLAEA--------L-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 156 ~~~~~--------~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
..... . +...+++++.++|||||.+++.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 22221 1 3467889999999999999988765
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-14 Score=119.09 Aligned_cols=90 Identities=16% Similarity=0.222 Sum_probs=74.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCC-------------------------------------------
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS------------------------------------------- 130 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~------------------------------------------- 130 (209)
.++.+|||+|||+|..+..+++. +..+|+|+|+++.
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 46789999999999999999984 5569999999875
Q ss_pred ------------------------------CCcEEEcCCCCCC-----CCCCceeeEEcccchhhh-------CHHHHHH
Q 028410 131 ------------------------------LPLVSRADPHNLP-----FFDEAFDVAFTAHLAEAL-------FPSRFVG 168 (209)
Q Consensus 131 ------------------------------~~~~~~~d~~~~~-----~~~~~fD~i~~~~~~~~~-------~~~~~l~ 168 (209)
.+.+.++|+...+ +.+++||+|+|..+.+++ ++.++++
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 2446677776544 567899999998877554 5688999
Q ss_pred HHHHhcccCcEEEEEE
Q 028410 169 EMERTVKIGGVCMVLM 184 (209)
Q Consensus 169 ~~~r~LkpgG~lil~~ 184 (209)
++.++|||||++++..
T Consensus 205 ~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 205 RIYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHHEEEEEEEEEEC
T ss_pred HHHHHhCCCcEEEEec
Confidence 9999999999988753
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.54 E-value=7.2e-14 Score=108.00 Aligned_cols=105 Identities=14% Similarity=0.214 Sum_probs=79.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC----CCcEEEcCCCCCCCC-----------CCceeeEEcccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----LPLVSRADPHNLPFF-----------DEAFDVAFTAHL 157 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~----~~~~~~~d~~~~~~~-----------~~~fD~i~~~~~ 157 (209)
.++++.+|||+|||+|.++..+++. .++|+|+|+++. .+.++++|+.+.+.. .++||+|+++..
T Consensus 22 ~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~ 100 (191)
T 3dou_A 22 VVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAM 100 (191)
T ss_dssp CSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCCCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCC
T ss_pred CCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccccCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCC
Confidence 4588999999999999999999998 469999999986 456899999886521 149999998521
Q ss_pred --------hhhh----CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhc
Q 028410 158 --------AEAL----FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (209)
Q Consensus 158 --------~~~~----~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~ 200 (209)
..+. ....++.++.++|||||.+++.+.... ....+.+.++
T Consensus 101 ~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~--~~~~~~~~l~ 153 (191)
T 3dou_A 101 AKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGD--MTNDFIAIWR 153 (191)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST--HHHHHHHHHG
T ss_pred cCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCC--CHHHHHHHHH
Confidence 1111 125788999999999999988776543 3455555554
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-14 Score=121.73 Aligned_cols=89 Identities=17% Similarity=0.226 Sum_probs=75.7
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC---------------CCcEEEcCCCCCCCCCCceeeEEcccch
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
+.++.+|||+|||+|..+..+++.|..+|+|+|+|+. .+.++++|+.++++++++||+|++..+.
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 4678999999999999999999987779999999951 1458999999999999999999996432
Q ss_pred h---hh-CHHHHHHHHHHhcccCcEEEE
Q 028410 159 E---AL-FPSRFVGEMERTVKIGGVCMV 182 (209)
Q Consensus 159 ~---~~-~~~~~l~~~~r~LkpgG~lil 182 (209)
+ +. ++..++.++.++|||||.++.
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 2 22 778999999999999999763
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-14 Score=113.43 Aligned_cols=108 Identities=14% Similarity=0.132 Sum_probs=84.5
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC---------------CcEEEcCCCCCC--CCCCceeeEEccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL---------------PLVSRADPHNLP--FFDEAFDVAFTAH 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~---------------~~~~~~d~~~~~--~~~~~fD~i~~~~ 156 (209)
.++.+|||+|||+|.++..+++. +..+++|+|+++.+ +.++++|+.+++ +++++||+|+++.
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 46789999999999999999984 55699999999763 348899999877 7788999999974
Q ss_pred chhhh---------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 157 LAEAL---------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 157 ~~~~~---------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
...+. ....++.++.++|||||.+++.+.. ......+.+.+...+|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~~~g~ 174 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN--RGLFEYSLVSFSQYGM 174 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC--HHHHHHHHHHHHHHTC
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC--HHHHHHHHHHHHHCCC
Confidence 33211 2368999999999999998776543 3345667777777665
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.1e-14 Score=108.20 Aligned_cols=105 Identities=14% Similarity=0.067 Sum_probs=77.6
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhc-CC---------ceEEEecCCCCC----CcEE-EcCCCCCC--------CCCCc
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-GV---------ADVTGVELMDSL----PLVS-RADPHNLP--------FFDEA 148 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~-~~---------~~v~~vD~s~~~----~~~~-~~d~~~~~--------~~~~~ 148 (209)
..++++.+|||+|||+|..+..+++. +. .+|+|+|+++.. +.++ .+|+.+.+ +++++
T Consensus 18 ~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (196)
T 2nyu_A 18 QILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRR 97 (196)
T ss_dssp CCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEECSCCTTSHHHHHHHHHHSGGGC
T ss_pred CCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEEEeccCCCHHHHHHHHHhcCCCC
Confidence 34588999999999999999999984 53 699999999865 4577 78877643 34578
Q ss_pred eeeEEcccc----hhhh-CH-------HHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHH
Q 028410 149 FDVAFTAHL----AEAL-FP-------SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVEL 198 (209)
Q Consensus 149 fD~i~~~~~----~~~~-~~-------~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l 198 (209)
||+|++... .++. +. ..+++++.++|||||.+++.+... .....+.+.
T Consensus 98 fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~--~~~~~~~~~ 157 (196)
T 2nyu_A 98 ADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG--SQSRRLQRR 157 (196)
T ss_dssp EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS--GGGHHHHHH
T ss_pred CcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC--ccHHHHHHH
Confidence 999998532 2222 33 478999999999999998876543 233444443
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-14 Score=119.84 Aligned_cols=92 Identities=12% Similarity=0.137 Sum_probs=71.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------------------EEEcCCC------CC--CCC
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------------VSRADPH------NL--PFF 145 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------------------~~~~d~~------~~--~~~ 145 (209)
.++.+|||+|||+|..+..++..+..+|+|+|+|+.|++ +.+.|+. ++ +++
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 357899999999998776666655569999999998653 3455552 22 356
Q ss_pred CCceeeEEcccchhhh----CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 146 DEAFDVAFTAHLAEAL----FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 146 ~~~fD~i~~~~~~~~~----~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+++||+|+|..+.++. +...+++++.++|||||++++.+..
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 7899999997666543 4589999999999999999887763
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-14 Score=113.22 Aligned_cols=99 Identities=16% Similarity=0.257 Sum_probs=77.4
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC--------------CcEEEcCCCCCCCCCCcee
Q 028410 85 FKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PLVSRADPHNLPFFDEAFD 150 (209)
Q Consensus 85 ~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~fD 150 (209)
+..+.......++.+|||+|||+|..+..+++.+. +|+|+|+|+.+ +.++++|+.+++++ ++||
T Consensus 30 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD 107 (252)
T 1wzn_A 30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFD 107 (252)
T ss_dssp HHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEE
T ss_pred HHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCcc
Confidence 33333333446778999999999999999999875 99999999864 45789999888764 6899
Q ss_pred eEEccc-chhhh---CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 151 VAFTAH-LAEAL---FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 151 ~i~~~~-~~~~~---~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+|++.. ..++. +...+++++.++|||||.+++.+.
T Consensus 108 ~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp EEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 999752 33332 458899999999999999887654
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-14 Score=110.21 Aligned_cols=106 Identities=17% Similarity=0.236 Sum_probs=86.9
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC---------------CcEEEcCCCCCCCCCCceeeEEcccch
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
+.++.+|||+|||+|..+..+++.+..+++++|+++.+ +.+..+|+.+. .+++||+|+++...
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~fD~i~~~~~~ 135 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD--VDGKFDLIVANILA 135 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT--CCSCEEEEEEESCH
T ss_pred ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc--CCCCceEEEECCcH
Confidence 36789999999999999999998877799999999873 55788888664 46899999997665
Q ss_pred hhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 159 EALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 159 ~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
++ ...+++++.++|||||.+++.... ..+...+.+++.+.+|.
T Consensus 136 ~~--~~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~~~~~~Gf~ 178 (205)
T 3grz_A 136 EI--LLDLIPQLDSHLNEDGQVIFSGID--YLQLPKIEQALAENSFQ 178 (205)
T ss_dssp HH--HHHHGGGSGGGEEEEEEEEEEEEE--GGGHHHHHHHHHHTTEE
T ss_pred HH--HHHHHHHHHHhcCCCCEEEEEecC--cccHHHHHHHHHHcCCc
Confidence 53 478899999999999998886443 34677888888888873
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.52 E-value=5e-14 Score=109.82 Aligned_cols=105 Identities=7% Similarity=-0.071 Sum_probs=82.9
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
...++.+|||+|||+|..+..+++.+ .+|+|+|+++.+ +.++.+|+.+......+||+|++..
T Consensus 52 ~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~ 130 (204)
T 3njr_A 52 APRRGELLWDIGGGSGSVSVEWCLAG-GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGG 130 (204)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECS
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECC
Confidence 45788999999999999999999984 599999999874 3477888887333346899999865
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
.. ++. +++++.++|||||++++.... ......+.+.++..++
T Consensus 131 ~~---~~~-~l~~~~~~LkpgG~lv~~~~~--~~~~~~~~~~l~~~g~ 172 (204)
T 3njr_A 131 GG---SQA-LYDRLWEWLAPGTRIVANAVT--LESETLLTQLHARHGG 172 (204)
T ss_dssp CC---CHH-HHHHHHHHSCTTCEEEEEECS--HHHHHHHHHHHHHHCS
T ss_pred cc---cHH-HHHHHHHhcCCCcEEEEEecC--cccHHHHHHHHHhCCC
Confidence 22 567 999999999999998776654 4566777777776654
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.1e-14 Score=109.81 Aligned_cols=92 Identities=16% Similarity=0.102 Sum_probs=74.5
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC-------------------cEEEcCCCCCCCCCCceeeEE
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP-------------------LVSRADPHNLPFFDEAFDVAF 153 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~-------------------~~~~~d~~~~~~~~~~fD~i~ 153 (209)
..++.+|||+|||+|..+..+++. +..+|+|+|+|+.++ .++++|+.++++++++ |.++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~ 103 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELH 103 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEE
Confidence 478899999999999999999995 356999999999733 3789999999987776 7666
Q ss_pred cc---cch--hhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 154 TA---HLA--EAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 154 ~~---~~~--~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.. ... ++. ++..+++++.++|||||.+++.+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 142 (218)
T 3mq2_A 104 VLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNL 142 (218)
T ss_dssp EESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEG
T ss_pred EEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEecc
Confidence 32 222 244 7799999999999999999987643
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5.2e-15 Score=119.05 Aligned_cols=107 Identities=13% Similarity=0.076 Sum_probs=84.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC---------------cEEEcCCCCCCCC---CCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP---------------LVSRADPHNLPFF---DEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~---~~~fD~i~~~ 155 (209)
.++.+|||+|||+|..+..++. .+..+|+++|+++.++ .++++|+++++.. +++||+|+++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 5788999999999999999998 4667999999998743 4788888876643 4899999997
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
.+. +...++.++.++|||||++++........+...+.+.++..++
T Consensus 159 a~~---~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~ 204 (249)
T 3g89_A 159 AVA---PLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGG 204 (249)
T ss_dssp SSC---CHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTE
T ss_pred CcC---CHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCC
Confidence 553 4788999999999999998877665444555556666655554
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-14 Score=114.42 Aligned_cols=108 Identities=16% Similarity=0.179 Sum_probs=81.5
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC---------------cEEEcCCCCCC--CCCCceeeEEccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP---------------LVSRADPHNLP--FFDEAFDVAFTAH 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~--~~~~~fD~i~~~~ 156 (209)
.++.+|||+|||+|..+..+++ .+..+++|+|+|+.++ .++++|+.+++ +++++||.|+++.
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 4678999999999999999998 4556999999998743 47888888765 6788999998753
Q ss_pred chhh---------hCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 157 LAEA---------LFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 157 ~~~~---------~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
...+ +....+++++.++|||||.+++.+.. ......+.+.+...++
T Consensus 117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~--~~~~~~~~~~~~~~g~ 171 (213)
T 2fca_A 117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN--RGLFEYSLKSFSEYGL 171 (213)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC--HHHHHHHHHHHHHHTC
T ss_pred CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHHCCC
Confidence 2211 12378999999999999998877643 3345556666665554
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-14 Score=123.76 Aligned_cols=98 Identities=16% Similarity=0.141 Sum_probs=79.4
Q ss_pred HHHHhcccCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCC------------------------CCcEEEcCCC
Q 028410 86 KHLQGKSLLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDS------------------------LPLVSRADPH 140 (209)
Q Consensus 86 ~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~------------------------~~~~~~~d~~ 140 (209)
..++....+.++.+|||+|||+|..+..++. .+..+++|||+++. .++++++|+.
T Consensus 163 ~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~ 242 (438)
T 3uwp_A 163 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL 242 (438)
T ss_dssp HHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTT
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECccc
Confidence 3333334678999999999999999999987 56667999999962 3568899999
Q ss_pred CCCCCC--CceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 141 NLPFFD--EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 141 ~~~~~~--~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
++++++ ..||+|+++.+...-+....+.++.++|||||++++.
T Consensus 243 ~lp~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 243 SEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp SHHHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEES
T ss_pred CCccccccCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEe
Confidence 988754 5799999976654446788899999999999998765
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-14 Score=108.33 Aligned_cols=106 Identities=10% Similarity=0.062 Sum_probs=79.6
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc---------------EEEcCCCC-CCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL---------------VSRADPHN-LPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~---------------~~~~d~~~-~~~~~~~fD~i~~~ 155 (209)
...++.+|||+|||+|..+..+++. +..+|+++|+++.+++ ++.+|..+ ++..+++||+|++.
T Consensus 22 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~ 101 (178)
T 3hm2_A 22 APKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIG 101 (178)
T ss_dssp CCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEEC
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEEC
Confidence 4578899999999999999999985 4569999999986332 55666644 33323899999998
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccc
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSS 203 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~ 203 (209)
...++ ..+++++.++|||||.+++.... ......+.+.++..+
T Consensus 102 ~~~~~---~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~~~~~~~ 144 (178)
T 3hm2_A 102 GGLTA---PGVFAAAWKRLPVGGRLVANAVT--VESEQMLWALRKQFG 144 (178)
T ss_dssp C-TTC---TTHHHHHHHTCCTTCEEEEEECS--HHHHHHHHHHHHHHC
T ss_pred CcccH---HHHHHHHHHhcCCCCEEEEEeec--cccHHHHHHHHHHcC
Confidence 76664 78899999999999998776654 344555666666554
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=116.08 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=75.1
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCC---------------CCCcEEEcCCCCCCCCCCceeeEEcccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMD---------------SLPLVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~---------------~~~~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
...++.+|||+|||+|..+..+++.|..+|+|+|+++ ..+.++++|+.++++++++||+|++..+
T Consensus 61 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 61 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 140 (340)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred hhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence 4578899999999999999999998767999999996 1345889999999998899999998653
Q ss_pred ---hhhh-CHHHHHHHHHHhcccCcEEE
Q 028410 158 ---AEAL-FPSRFVGEMERTVKIGGVCM 181 (209)
Q Consensus 158 ---~~~~-~~~~~l~~~~r~LkpgG~li 181 (209)
..+. ++..++.++.++|||||.++
T Consensus 141 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 141 GYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 2223 46789999999999999987
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.4e-14 Score=111.88 Aligned_cols=88 Identities=22% Similarity=0.295 Sum_probs=72.4
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC-------------cEEEcCCCC----CCCCCCceeeEEc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP-------------LVSRADPHN----LPFFDEAFDVAFT 154 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~-------------~~~~~d~~~----~~~~~~~fD~i~~ 154 (209)
.+.++.+|||+|||+|..+..+++. |.++|+|+|+|+.++ .++.+|+.+ .+++ ++||+|++
T Consensus 71 ~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~ 149 (230)
T 1fbn_A 71 PIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIYE 149 (230)
T ss_dssp CCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEEE
T ss_pred CCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEEE
Confidence 4578899999999999999999985 657999999998643 377899988 7766 78999993
Q ss_pred ccchhhhCH---HHHHHHHHHhcccCcEEEEEEe
Q 028410 155 AHLAEALFP---SRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 155 ~~~~~~~~~---~~~l~~~~r~LkpgG~lil~~~ 185 (209)
++. ++ ..+++++.+.|||||.+++...
T Consensus 150 -~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~ 179 (230)
T 1fbn_A 150 -DVA---QPNQAEILIKNAKWFLKKGGYGMIAIK 179 (230)
T ss_dssp -CCC---STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -ecC---ChhHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 221 34 7789999999999999998754
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.51 E-value=7.1e-14 Score=106.58 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=77.4
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-----------------CcEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-----------------PLVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~-----------------~~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
...++.+|||+|||+|..+..+++.+ .+++++|+++.+ +.+..+|+.+ ++++++||+|+++
T Consensus 49 ~~~~~~~vLdiG~G~G~~~~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~ 126 (194)
T 1dus_A 49 VVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITN 126 (194)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEEC
T ss_pred ccCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccccCCceEEEEC
Confidence 44688999999999999999999884 599999999762 5678888877 3457899999998
Q ss_pred cchhh-h-CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 156 HLAEA-L-FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 156 ~~~~~-~-~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
...++ . +...+++++.++|||||.+++.....
T Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 127 PPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp CCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred CCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 76554 2 56899999999999999998887764
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-14 Score=112.76 Aligned_cols=111 Identities=15% Similarity=0.184 Sum_probs=86.1
Q ss_pred cCCCCCeEEEEcCC-CChhHHHHHhcCCceEEEecCCCCC--------------CcEEEcCCCCC-CCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAG-AGHEVMAFNSIGVADVTGVELMDSL--------------PLVSRADPHNL-PFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG-~G~~~~~la~~~~~~v~~vD~s~~~--------------~~~~~~d~~~~-~~~~~~fD~i~~~~ 156 (209)
.++++.+|||+||| +|..+..+++....+|+|+|+++.+ +.++++|+..+ ++++++||+|+++.
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 45789999999999 9999999998623599999999874 45788887543 45678999999873
Q ss_pred chhhh--------------------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 157 LAEAL--------------------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 157 ~~~~~--------------------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
...+. ....+++++.++|||||.+++.+... ......+.+.+++.++
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~~l~~~g~ 198 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK-EKLLNVIKERGIKLGY 198 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC-HHHHHHHHHHHHHTTC
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc-HhHHHHHHHHHHHcCC
Confidence 32211 13789999999999999998876542 3566778888888777
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-14 Score=109.57 Aligned_cols=93 Identities=17% Similarity=0.065 Sum_probs=76.6
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCCC--CCCCceeeEEcccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNLP--FFDEAFDVAFTAHL 157 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~--~~~~~fD~i~~~~~ 157 (209)
.++.+|||+|||+|..+..++..+..+|+|+|+|+.++ +++++|+.+.+ +++++||+|+++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 57889999999999999988887777999999998744 47788877753 45789999999765
Q ss_pred hhhh--CHHHHHHHHHH--hcccCcEEEEEEecC
Q 028410 158 AEAL--FPSRFVGEMER--TVKIGGVCMVLMEEC 187 (209)
Q Consensus 158 ~~~~--~~~~~l~~~~r--~LkpgG~lil~~~~~ 187 (209)
.++. +..+++.++.+ +|||||.+++.....
T Consensus 123 ~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 123 YNVDSADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 5542 57889999999 999999998877653
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.8e-14 Score=118.50 Aligned_cols=98 Identities=20% Similarity=0.216 Sum_probs=79.2
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCc
Q 028410 85 FKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEA 148 (209)
Q Consensus 85 ~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~ 148 (209)
...+.......++.+|||+|||+|..+..+++.|..+|+|+|+| .+ +.++++|+.+++++ ++
T Consensus 52 ~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 129 (376)
T 3r0q_C 52 FNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EK 129 (376)
T ss_dssp HHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SC
T ss_pred HHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-Cc
Confidence 33343344567889999999999999999999877799999999 63 35889999998876 89
Q ss_pred eeeEEcccchhhh----CHHHHHHHHHHhcccCcEEEEEE
Q 028410 149 FDVAFTAHLAEAL----FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 149 fD~i~~~~~~~~~----~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
||+|++..+.+.+ .+..++.++.++|||||.+++..
T Consensus 130 ~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 130 VDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp EEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred ceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 9999996543333 47889999999999999986654
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.50 E-value=6e-14 Score=110.89 Aligned_cols=88 Identities=20% Similarity=0.281 Sum_probs=75.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------CcEEEcCCCCCCCCCCceeeEEc-ccchhhh-C
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------PLVSRADPHNLPFFDEAFDVAFT-AHLAEAL-F 162 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------~~~~~~d~~~~~~~~~~fD~i~~-~~~~~~~-~ 162 (209)
.++.+|||+|||+|..+..+++.+. +++|+|+|+.+ +.+..+|+.++++ +++||+|+| ..+.+++ +
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCC
Confidence 6789999999999999999998754 99999999874 4588999999887 789999995 4466665 3
Q ss_pred ---HHHHHHHHHHhcccCcEEEEEE
Q 028410 163 ---PSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 163 ---~~~~l~~~~r~LkpgG~lil~~ 184 (209)
...+++++.++|||||.+++..
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 4789999999999999998864
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.2e-14 Score=119.76 Aligned_cols=109 Identities=20% Similarity=0.220 Sum_probs=87.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC--------------cEEEcCCCCCCCCCCceeeEEcccchhh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------------LVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~--------------~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 160 (209)
.++.+|||+|||+|..+..+++.+. +|+++|+|+.++ .++.+|+.+.+.++++||+|+++...++
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 4678999999999999999999865 999999998743 4889999998877789999999865554
Q ss_pred -----h-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 161 -----L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 161 -----~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
. +...++.++.++|||||.++++..... .....+.+.|..++.+
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l-~~~~~l~~~f~~v~~l 360 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFL-KYEPLLEEKFGAFQTL 360 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTS-CHHHHHHHHHSCCEEE
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCC-ChHHHHHHhhccEEEE
Confidence 2 468899999999999999988876542 2345566677665543
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-14 Score=114.37 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=84.8
Q ss_pred cCC-CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCCCC--CCCCceeeEE
Q 028410 93 LLF-NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLP--FFDEAFDVAF 153 (209)
Q Consensus 93 ~~~-~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~--~~~~~fD~i~ 153 (209)
..+ ++.+|||+|||+|..+..+++.+..+|+|+|+++.+ +.++++|+.+.+ +++++||+|+
T Consensus 45 ~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 45 YLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred cCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 346 789999999999999999999755599999999873 457888988865 5578999999
Q ss_pred cccchh-----hh----------------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 154 TAHLAE-----AL----------------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 154 ~~~~~~-----~~----------------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
++.... .. +...+++++.++|||||+++++.. ......+.+.+++.++
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~~~~~~~~~~l~~~~~ 193 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR---PERLLDIIDIMRKYRL 193 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC---TTTHHHHHHHHHHTTE
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc---HHHHHHHHHHHHHCCC
Confidence 962211 11 236799999999999999998765 3456677777777666
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=113.42 Aligned_cols=88 Identities=11% Similarity=0.016 Sum_probs=70.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcE-E----------EcCCCCCC---CCCCceeeEEcccchhh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLV-S----------RADPHNLP---FFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~-~----------~~d~~~~~---~~~~~fD~i~~~~~~~~ 160 (209)
.++.+|||+|||||.++..+++.|.++|+|+|+++.|+++ . ..|+..++ ++..+||+|++...++
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~- 162 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFI- 162 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSS-
T ss_pred ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHh-
Confidence 4678999999999999999999887799999999999974 1 12333333 3445699999865544
Q ss_pred hCHHHHHHHHHHhcccCcEEEEEE
Q 028410 161 LFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 161 ~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+...++.++.|+|||||.+++++
T Consensus 163 -sl~~vL~e~~rvLkpGG~lv~lv 185 (291)
T 3hp7_A 163 -SLNLILPALAKILVDGGQVVALV 185 (291)
T ss_dssp -CGGGTHHHHHHHSCTTCEEEEEE
T ss_pred -hHHHHHHHHHHHcCcCCEEEEEE
Confidence 45889999999999999998873
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.4e-14 Score=109.47 Aligned_cols=94 Identities=13% Similarity=0.183 Sum_probs=75.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC----------------cEEEcCCCCCC-CCCCceeeEE
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP----------------LVSRADPHNLP-FFDEAFDVAF 153 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~----------------~~~~~d~~~~~-~~~~~fD~i~ 153 (209)
.++++.+|||+|||+|..+..+++. +.++++|+|+++.++ .++++|+.+++ +.+++||+|+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 98 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM 98 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence 3478899999999999999999985 456999999998633 47888888775 5678999999
Q ss_pred cccch---------hhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 154 TAHLA---------EAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 154 ~~~~~---------~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
++... ... +...+++++.++|||||.+++....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 86422 111 3467999999999999999888744
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.8e-14 Score=115.11 Aligned_cols=91 Identities=16% Similarity=0.117 Sum_probs=73.1
Q ss_pred cccCCCCCeEEEEcCCCChhH-HHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEc
Q 028410 91 KSLLFNHSKVLCVSAGAGHEV-MAFNSIGVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFT 154 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~G~~~-~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~ 154 (209)
...++++.+|||||||+|..+ ..+++....+|+|+|+++.++ +++++|+.+++ +++||+|++
T Consensus 117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~ 194 (298)
T 3fpf_A 117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMV 194 (298)
T ss_dssp HTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEE
T ss_pred HcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEE
Confidence 346799999999999998765 455664345999999999744 47888888865 789999998
Q ss_pred ccchhhhCHHHHHHHHHHhcccCcEEEEEEe
Q 028410 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
... .-++.++++++.++|||||++++...
T Consensus 195 ~a~--~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 195 AAL--AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp CTT--CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CCC--ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 544 23789999999999999999887654
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.6e-14 Score=110.24 Aligned_cols=87 Identities=17% Similarity=0.167 Sum_probs=74.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC--------------CcEEEcCCCCCCCCCCceeeEEccc-chh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PLVSRADPHNLPFFDEAFDVAFTAH-LAE 159 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~fD~i~~~~-~~~ 159 (209)
.++.+|||+|||+|..+..+++. .+++|+|+|+.+ +.+.++|+.+++++ ++||+|++.. +.+
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EPVDAITILCDSLN 108 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCEEEEEECTTGGG
T ss_pred CCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCcCEEEEeCCchh
Confidence 67799999999999999999887 599999999863 45788999888875 8999999874 666
Q ss_pred hh----CHHHHHHHHHHhcccCcEEEEEE
Q 028410 160 AL----FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 160 ~~----~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
++ ++..+++++.++|||||.+++.+
T Consensus 109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 109 YLQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp GCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 65 35788999999999999998854
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=108.50 Aligned_cols=111 Identities=15% Similarity=0.124 Sum_probs=82.3
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCC-------------CCcEEEcCCCC---CCCCCCceeeEE
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS-------------LPLVSRADPHN---LPFFDEAFDVAF 153 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~-------------~~~~~~~d~~~---~~~~~~~fD~i~ 153 (209)
..+.++.+|||+|||+|.++..+++. +.++|+|+|+|+. .+.++.+|+.+ +++.+++||+|+
T Consensus 73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~ 152 (233)
T 2ipx_A 73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIF 152 (233)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEE
T ss_pred ecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEE
Confidence 34578899999999999999999985 3469999999964 34578899987 455678999999
Q ss_pred cccchhhhC-HHHHHHHHHHhcccCcEEEEEEecCC---ccc----HHHHHHHhccccc
Q 028410 154 TAHLAEALF-PSRFVGEMERTVKIGGVCMVLMEECA---GRE----IKQIVELFRTSSF 204 (209)
Q Consensus 154 ~~~~~~~~~-~~~~l~~~~r~LkpgG~lil~~~~~~---~~~----~~~~~~l~~~~~~ 204 (209)
++.. ..+ ...++.++.++|||||.+++.+.... ... +..-.+.+...||
T Consensus 153 ~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 209 (233)
T 2ipx_A 153 ADVA--QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENM 209 (233)
T ss_dssp ECCC--CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTE
T ss_pred EcCC--CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCC
Confidence 9543 222 35568899999999999999765421 011 1112577777777
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-13 Score=110.32 Aligned_cols=91 Identities=19% Similarity=0.062 Sum_probs=71.3
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC----------------CCcEE--EcCCCCCCCCCCceeeEE
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVS--RADPHNLPFFDEAFDVAF 153 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~----------------~~~~~--~~d~~~~~~~~~~fD~i~ 153 (209)
..++++.+|||+|||+|.++..+++. ++|+|+|+++. .+.++ ++|+.+++ +++||+|+
T Consensus 70 ~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~ 145 (265)
T 2oxt_A 70 GYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIM 145 (265)
T ss_dssp TSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEE
T ss_pred CCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEE
Confidence 45688999999999999999999988 69999999884 12356 78888865 78999999
Q ss_pred cccchhhh-C----HH---HHHHHHHHhcccCc--EEEEEEecC
Q 028410 154 TAHLAEAL-F----PS---RFVGEMERTVKIGG--VCMVLMEEC 187 (209)
Q Consensus 154 ~~~~~~~~-~----~~---~~l~~~~r~LkpgG--~lil~~~~~ 187 (209)
|+.. ++. + .. .++.++.++||||| .+++-+..+
T Consensus 146 sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~ 188 (265)
T 2oxt_A 146 CDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCP 188 (265)
T ss_dssp ECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCT
T ss_pred EeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCC
Confidence 9644 221 2 12 37899999999999 888766543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-13 Score=113.73 Aligned_cols=109 Identities=15% Similarity=0.101 Sum_probs=86.5
Q ss_pred CCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCC----------------CCcEEEcCCCCCCCCCCceeeEEccc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
..+..+|||+|||+|..+..+++ .+..+++++|+ +. .+++..+|+. .+++. +||+|++.+
T Consensus 167 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~ 243 (332)
T 3i53_A 167 WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSA 243 (332)
T ss_dssp CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEES
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEeh
Confidence 35678999999999999999988 45569999998 54 2458889987 45555 899999999
Q ss_pred chhhh-CH--HHHHHHHHHhcccCcEEEEEEecCC-------------------cccHHHHHHHhcccccc
Q 028410 157 LAEAL-FP--SRFVGEMERTVKIGGVCMVLMEECA-------------------GREIKQIVELFRTSSFT 205 (209)
Q Consensus 157 ~~~~~-~~--~~~l~~~~r~LkpgG~lil~~~~~~-------------------~~~~~~~~~l~~~~~~~ 205 (209)
+.++. ++ .+++++++++|||||++++.....+ .....++.++++++||.
T Consensus 244 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~ 314 (332)
T 3i53_A 244 VLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLA 314 (332)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEE
T ss_pred hhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCE
Confidence 99888 43 7899999999999999988754322 13456677788888874
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.6e-14 Score=115.15 Aligned_cols=107 Identities=14% Similarity=0.119 Sum_probs=86.8
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEcccc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
.+++.+|||+|||+|.++..+++.+..+|+|+|+|+.+ +.++++|+.+++. +++||+|+++..
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc
Confidence 37799999999999999999999765479999999873 3478999998876 789999999643
Q ss_pred hhhhCHHHHHHHHHHhcccCcEEEEEEecC----CcccHHHHHHHhccccc
Q 028410 158 AEALFPSRFVGEMERTVKIGGVCMVLMEEC----AGREIKQIVELFRTSSF 204 (209)
Q Consensus 158 ~~~~~~~~~l~~~~r~LkpgG~lil~~~~~----~~~~~~~~~~l~~~~~~ 204 (209)
. ....++.++.++|||||.+++..... .......+.+.++..++
T Consensus 202 ~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~ 249 (278)
T 2frn_A 202 V---RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGY 249 (278)
T ss_dssp S---SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTC
T ss_pred h---hHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCC
Confidence 2 34678899999999999998887653 24566777888877766
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-13 Score=108.73 Aligned_cols=111 Identities=19% Similarity=0.180 Sum_probs=78.4
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCC-------------CcEEEcCCCCCC---CCCCceeeEE
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL-------------PLVSRADPHNLP---FFDEAFDVAF 153 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~-------------~~~~~~d~~~~~---~~~~~fD~i~ 153 (209)
..++++.+|||+|||+|..+..+++. +.++|+|+|+++.+ +.++++|+.... ...++||+|+
T Consensus 72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~ 151 (232)
T 3id6_C 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLY 151 (232)
T ss_dssp CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEE
T ss_pred cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEE
Confidence 34689999999999999999999984 46799999999954 347788987643 1246899999
Q ss_pred cccchhhhCHHHHH-HHHHHhcccCcEEEEEEecCC-------cccHHHHHHHhccccc
Q 028410 154 TAHLAEALFPSRFV-GEMERTVKIGGVCMVLMEECA-------GREIKQIVELFRTSSF 204 (209)
Q Consensus 154 ~~~~~~~~~~~~~l-~~~~r~LkpgG~lil~~~~~~-------~~~~~~~~~l~~~~~~ 204 (209)
++... .+....+ ..+.+.|||||++++.+.... ...+....+.++..+|
T Consensus 152 ~d~a~--~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf 208 (232)
T 3id6_C 152 VDIAQ--PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNF 208 (232)
T ss_dssp ECCCC--TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTE
T ss_pred ecCCC--hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCC
Confidence 86332 2444444 556669999999998864321 2233445555555555
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=111.69 Aligned_cols=88 Identities=23% Similarity=0.258 Sum_probs=74.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC----------CcEEEcCCCCCCCCCCceeeEEcccchhhhCH
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------PLVSRADPHNLPFFDEAFDVAFTAHLAEALFP 163 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~----------~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~ 163 (209)
.++.+|||+|||+|..+..+++. +..+++|+|+|+.+ +.+..+|+.++++++++||+|++....
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 67889999999999999999985 34599999999874 458899999999989999999986542
Q ss_pred HHHHHHHHHhcccCcEEEEEEecCC
Q 028410 164 SRFVGEMERTVKIGGVCMVLMEECA 188 (209)
Q Consensus 164 ~~~l~~~~r~LkpgG~lil~~~~~~ 188 (209)
..++++.++|||||.+++.....+
T Consensus 159 -~~l~~~~~~L~pgG~l~~~~~~~~ 182 (269)
T 1p91_A 159 -CKAEELARVVKPGGWVITATPGPR 182 (269)
T ss_dssp -CCHHHHHHHEEEEEEEEEEEECTT
T ss_pred -hhHHHHHHhcCCCcEEEEEEcCHH
Confidence 347999999999999998877643
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.9e-14 Score=119.64 Aligned_cols=90 Identities=16% Similarity=0.232 Sum_probs=73.5
Q ss_pred CCCCeEEEEcCC------CChhHHHHHh-c-CCceEEEecCCCCCC------cEEEcCCCCCCCC------CCceeeEEc
Q 028410 95 FNHSKVLCVSAG------AGHEVMAFNS-I-GVADVTGVELMDSLP------LVSRADPHNLPFF------DEAFDVAFT 154 (209)
Q Consensus 95 ~~~~~iLDiGcG------~G~~~~~la~-~-~~~~v~~vD~s~~~~------~~~~~d~~~~~~~------~~~fD~i~~ 154 (209)
.++.+||||||| +|..+..+++ + +.++|+|+|+|+.+. .++++|+.++++. +++||+|++
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVis 294 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHVDELRIRTIQGDQNDAEFLDRIARRYGPFDIVID 294 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGGCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEE
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhhcCCCcEEEEecccccchhhhhhcccCCccEEEE
Confidence 567899999999 6666666665 3 567999999999854 4889999998887 789999999
Q ss_pred ccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
....+..+...+++++.++|||||++++..
T Consensus 295 dgsH~~~d~~~aL~el~rvLKPGGvlVi~D 324 (419)
T 3sso_A 295 DGSHINAHVRTSFAALFPHVRPGGLYVIED 324 (419)
T ss_dssp CSCCCHHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCcccchhHHHHHHHHHHhcCCCeEEEEEe
Confidence 654322278899999999999999988863
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-13 Score=111.22 Aligned_cols=91 Identities=13% Similarity=0.007 Sum_probs=71.1
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC----------------CCcEE--EcCCCCCCCCCCceeeEE
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVS--RADPHNLPFFDEAFDVAF 153 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~----------------~~~~~--~~d~~~~~~~~~~fD~i~ 153 (209)
..++++.+|||+|||+|.++..+++. ++|+|+|+++. .+.++ ++|+.+++ +++||+|+
T Consensus 78 ~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vv 153 (276)
T 2wa2_A 78 GGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVL 153 (276)
T ss_dssp TSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEE
T ss_pred CCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEE
Confidence 45688999999999999999999988 59999999883 12356 77887765 78999999
Q ss_pred cccchhhh-C----HH---HHHHHHHHhcccCc--EEEEEEecC
Q 028410 154 TAHLAEAL-F----PS---RFVGEMERTVKIGG--VCMVLMEEC 187 (209)
Q Consensus 154 ~~~~~~~~-~----~~---~~l~~~~r~LkpgG--~lil~~~~~ 187 (209)
|+.. ++. + .. .++.++.++||||| .+++.+..+
T Consensus 154 sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~ 196 (276)
T 2wa2_A 154 CDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNP 196 (276)
T ss_dssp ECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred ECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCC
Confidence 9644 221 2 11 47899999999999 888765553
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.9e-13 Score=113.15 Aligned_cols=115 Identities=14% Similarity=0.081 Sum_probs=89.2
Q ss_pred HHhcccCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCC----------------CCcEEEcCCCCCCCCCCcee
Q 028410 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFD 150 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD 150 (209)
+.......+..+|||+|||+|..+..+++ .+..+++++|+ +. .+.+..+|+. .+++. .||
T Consensus 194 l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D 270 (369)
T 3gwz_A 194 VAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GAD 270 (369)
T ss_dssp HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCS
T ss_pred HHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-Cce
Confidence 33333457789999999999999999988 45569999998 54 2558889988 55655 899
Q ss_pred eEEcccchhhhC-HH--HHHHHHHHhcccCcEEEEEEecCCc---------------------ccHHHHHHHhcccccc
Q 028410 151 VAFTAHLAEALF-PS--RFVGEMERTVKIGGVCMVLMEECAG---------------------REIKQIVELFRTSSFT 205 (209)
Q Consensus 151 ~i~~~~~~~~~~-~~--~~l~~~~r~LkpgG~lil~~~~~~~---------------------~~~~~~~~l~~~~~~~ 205 (209)
+|++.++.++.+ +. +++++++++|||||++++.....+. ....++.++++++||.
T Consensus 271 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~ 349 (369)
T 3gwz_A 271 VYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLR 349 (369)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEE
T ss_pred EEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCe
Confidence 999999988884 33 7999999999999999887644322 3455677788888873
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=114.42 Aligned_cols=92 Identities=13% Similarity=0.168 Sum_probs=76.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------------CcEEEcCCCCCC----CC--C
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------------PLVSRADPHNLP----FF--D 146 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------------~~~~~~d~~~~~----~~--~ 146 (209)
.++.+|||+|||+|..+..+++.+..+++|+|+|+.+ +.++++|+.+++ ++ +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 4788999999999999999998655699999999874 357899999876 53 4
Q ss_pred CceeeEEcccchhhh-----CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 147 EAFDVAFTAHLAEAL-----FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 147 ~~fD~i~~~~~~~~~-----~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
++||+|++..+.++. ++..++.++.++|||||.+++.+..
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 599999998777654 3479999999999999999888764
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-13 Score=104.22 Aligned_cols=106 Identities=13% Similarity=0.100 Sum_probs=83.9
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCCCCCCC-CceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFD-EAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~-~~fD~i~~~ 155 (209)
...++.+|||+|||+|..+..+++.+ .+++++|+++.+ +.+..+|+.+ ++++ ++||+|++.
T Consensus 30 ~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~ 107 (192)
T 1l3i_A 30 EPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVG 107 (192)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEES
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEEC
Confidence 45788999999999999999999976 699999999853 3466677655 2333 689999997
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
...+ +...+++++.++|||||.+++.... ......+.+.+++.+|
T Consensus 108 ~~~~--~~~~~l~~~~~~l~~gG~l~~~~~~--~~~~~~~~~~l~~~g~ 152 (192)
T 1l3i_A 108 GSGG--ELQEILRIIKDKLKPGGRIIVTAIL--LETKFEAMECLRDLGF 152 (192)
T ss_dssp CCTT--CHHHHHHHHHHTEEEEEEEEEEECB--HHHHHHHHHHHHHTTC
T ss_pred CchH--HHHHHHHHHHHhcCCCcEEEEEecC--cchHHHHHHHHHHCCC
Confidence 6543 4689999999999999998877654 4456677778887776
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.2e-13 Score=110.99 Aligned_cols=109 Identities=15% Similarity=0.233 Sum_probs=87.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEcccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
.++.+|||+|||+|..+..+++. +..+++++|++ .+ +.+..+|+.+.+++++ ||+|++.++
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~ 241 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNF 241 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcch
Confidence 67899999999999999999984 55699999998 52 4588999988777654 999999988
Q ss_pred hhhhC-H--HHHHHHHHHhcccCcEEEEEEecCC------------------------cccHHHHHHHhcccccc
Q 028410 158 AEALF-P--SRFVGEMERTVKIGGVCMVLMEECA------------------------GREIKQIVELFRTSSFT 205 (209)
Q Consensus 158 ~~~~~-~--~~~l~~~~r~LkpgG~lil~~~~~~------------------------~~~~~~~~~l~~~~~~~ 205 (209)
.++.+ + .++++++.++|||||++++...... .....++.++++++||.
T Consensus 242 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~ 316 (335)
T 2r3s_A 242 LHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFS 316 (335)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCS
T ss_pred hccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCC
Confidence 88772 3 6899999999999999888754322 12356677777777773
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-12 Score=108.36 Aligned_cols=89 Identities=13% Similarity=0.082 Sum_probs=73.9
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.+.+ .+|||+|||+|..+..+++ .+..+++++|+ +.++ .++.+|+.+ +++ ++||+|++.
T Consensus 165 ~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~ 240 (334)
T 2ip2_A 165 DFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLS 240 (334)
T ss_dssp CCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEE
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEc
Confidence 3455 8999999999999999988 45569999999 8754 377888877 555 689999999
Q ss_pred cchhhh-CH--HHHHHHHHHhcccCcEEEEEEe
Q 028410 156 HLAEAL-FP--SRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 156 ~~~~~~-~~--~~~l~~~~r~LkpgG~lil~~~ 185 (209)
++.++. ++ .++++++.++|||||++++...
T Consensus 241 ~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 241 RIIGDLDEAASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred hhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 988877 44 3899999999999999988853
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-13 Score=106.06 Aligned_cols=98 Identities=14% Similarity=0.117 Sum_probs=78.9
Q ss_pred CCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC---------------CcEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
++.+|||+|||+|..+..++.. +..+++++|+|+.+ +.+..+|+.+.+ ++++||+|+++.+.
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~~- 142 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAFA- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCSS-
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEeccC-
Confidence 5789999999999999999984 55699999999863 457889988876 56799999986542
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhc
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~ 200 (209)
+...++.++.++|||||.+++.... .....+.++++
T Consensus 143 --~~~~~l~~~~~~L~~gG~l~~~~~~---~~~~~~~~~~~ 178 (207)
T 1jsx_A 143 --SLNDMVSWCHHLPGEQGRFYALKGQ---MPEDEIALLPE 178 (207)
T ss_dssp --SHHHHHHHHTTSEEEEEEEEEEESS---CCHHHHHTSCT
T ss_pred --CHHHHHHHHHHhcCCCcEEEEEeCC---CchHHHHHHhc
Confidence 5789999999999999998887653 34555666554
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.6e-13 Score=114.08 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=75.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCC---------------CCCcEEEcCCCCCCCCCCceeeEEcccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMD---------------SLPLVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~---------------~~~~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
...++.+|||+|||+|..+..+++.|..+|+|+|+|+ ..+.++.+|+.+++++ ++||+|++..+
T Consensus 47 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~ 125 (348)
T 2y1w_A 47 TDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPM 125 (348)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCC
T ss_pred ccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCc
Confidence 4468899999999999999999988767999999996 1345889999998765 68999999876
Q ss_pred hhhh---CHHHHHHHHHHhcccCcEEEEEE
Q 028410 158 AEAL---FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 158 ~~~~---~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
.+++ .....+.++.+.|||||.+++..
T Consensus 126 ~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 126 GYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp BTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred hhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 5554 35678889999999999987654
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.9e-13 Score=109.47 Aligned_cols=94 Identities=16% Similarity=0.017 Sum_probs=76.1
Q ss_pred CCCCeEEEEcCCC---ChhHHHHHh-cCCceEEEecCCCCCC-------------cEEEcCCCCCC-----------CCC
Q 028410 95 FNHSKVLCVSAGA---GHEVMAFNS-IGVADVTGVELMDSLP-------------LVSRADPHNLP-----------FFD 146 (209)
Q Consensus 95 ~~~~~iLDiGcG~---G~~~~~la~-~~~~~v~~vD~s~~~~-------------~~~~~d~~~~~-----------~~~ 146 (209)
....+|||+|||+ |..+..+.+ .+..+|+++|+|+.|+ .++.+|+.+.+ ++.
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~ 155 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDF 155 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCC
Confidence 3458999999999 988776665 3446999999998753 47889987631 333
Q ss_pred CceeeEEcccchhhh-C--HHHHHHHHHHhcccCcEEEEEEecCC
Q 028410 147 EAFDVAFTAHLAEAL-F--PSRFVGEMERTVKIGGVCMVLMEECA 188 (209)
Q Consensus 147 ~~fD~i~~~~~~~~~-~--~~~~l~~~~r~LkpgG~lil~~~~~~ 188 (209)
++||+|++..+.+++ + +..+++++.++|||||++++.....+
T Consensus 156 ~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~ 200 (274)
T 2qe6_A 156 SRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDT 200 (274)
T ss_dssp TSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCS
T ss_pred CCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCc
Confidence 589999999998888 4 79999999999999999999887653
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.9e-13 Score=102.32 Aligned_cols=103 Identities=12% Similarity=0.134 Sum_probs=84.4
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC---------------CcEEEcCCCCCCCCCCceeeEEcccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
...++.+|||+|||+|..+..+++ +..+++++|+++.+ +.++.+|+.+ ++++++||+|+++..
T Consensus 32 ~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~~~~ 109 (183)
T 2yxd_A 32 NLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKAFIGGT 109 (183)
T ss_dssp CCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEEEECSC
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEEEECCc
Confidence 456788999999999999999999 45699999999863 4477888877 667789999999877
Q ss_pred hhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 158 AEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 158 ~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
.++..+++++.++ |||.+++.... ......+.+.+++.++
T Consensus 110 ---~~~~~~l~~~~~~--~gG~l~~~~~~--~~~~~~~~~~l~~~g~ 149 (183)
T 2yxd_A 110 ---KNIEKIIEILDKK--KINHIVANTIV--LENAAKIINEFESRGY 149 (183)
T ss_dssp ---SCHHHHHHHHHHT--TCCEEEEEESC--HHHHHHHHHHHHHTTC
T ss_pred ---ccHHHHHHHHhhC--CCCEEEEEecc--cccHHHHHHHHHHcCC
Confidence 5688999999998 99998877643 4567778888887775
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.6e-13 Score=113.25 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=73.5
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC---------------CCcEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
.++.+|||+|||+|..+..+++.|..+|+|+|+++. .+.++.+|+.++++++++||+|++..+.+
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchh
Confidence 578899999999999999999987779999999941 24478999999988889999999974433
Q ss_pred h---h-CHHHHHHHHHHhcccCcEEE
Q 028410 160 A---L-FPSRFVGEMERTVKIGGVCM 181 (209)
Q Consensus 160 ~---~-~~~~~l~~~~r~LkpgG~li 181 (209)
. . .+..++.++.++|||||.++
T Consensus 117 ~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 117 FLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred hcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 2 2 57889999999999999986
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.7e-14 Score=111.81 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC---------------cEEEcCCCCC-C--CCCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP---------------LVSRADPHNL-P--FFDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~---------------~~~~~d~~~~-~--~~~~~fD~i~~~ 155 (209)
+++.+|||+|||+|..+..+++ .+..+|+|+|+|+.++ .++++|+.++ + +++++||.|+++
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 4678999999999999999998 4556899999998744 3778887773 3 678999999986
Q ss_pred cchhhh---------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhc
Q 028410 156 HLAEAL---------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (209)
Q Consensus 156 ~~~~~~---------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~ 200 (209)
....+. ....+++++.++|||||.+++.+... .....+.+.+.
T Consensus 113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~--~~~~~~~~~~~ 164 (218)
T 3dxy_A 113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWE--PYAEHMLEVMS 164 (218)
T ss_dssp SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCH--HHHHHHHHHHH
T ss_pred CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCH--HHHHHHHHHHH
Confidence 322111 11369999999999999988777542 23444555554
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-13 Score=107.26 Aligned_cols=88 Identities=18% Similarity=0.215 Sum_probs=74.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC---------------CcEEEcCCCCCCCCCCceeeEEcccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
...++.+|||+|||+|..+..+++.+ .+|+++|+++.+ +.+..+|+.+...++++||+|++...
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~ 152 (210)
T 3lbf_A 74 ELTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAA 152 (210)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSB
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccc
Confidence 55789999999999999999999984 599999999863 34788888887666789999999877
Q ss_pred hhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 158 AEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 158 ~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.+++. .++.+.|||||++++.+..
T Consensus 153 ~~~~~-----~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 153 PPEIP-----TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CSSCC-----THHHHTEEEEEEEEEEECS
T ss_pred hhhhh-----HHHHHhcccCcEEEEEEcC
Confidence 66662 2689999999999998876
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.6e-13 Score=113.70 Aligned_cols=110 Identities=10% Similarity=0.045 Sum_probs=84.3
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC------------------cEEEcCCCCCCCCCCceeeEEc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP------------------LVSRADPHNLPFFDEAFDVAFT 154 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~------------------~~~~~d~~~~~~~~~~fD~i~~ 154 (209)
..++.+|||+|||+|.++..+++. +..+|+++|+|+.++ .+..+|+.+ ++++++||+|++
T Consensus 220 ~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~ 298 (375)
T 4dcm_A 220 ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLC 298 (375)
T ss_dssp CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEE
T ss_pred ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEE
Confidence 345689999999999999999985 356999999998743 257888877 567789999999
Q ss_pred ccchhhh------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 155 AHLAEAL------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 155 ~~~~~~~------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
+..+++. ...++++++.++|||||.++++...... ....+.+.|+.+..+
T Consensus 299 nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~-~~~~l~~~fg~~~~~ 354 (375)
T 4dcm_A 299 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLD-YFHKLKKIFGNCTTI 354 (375)
T ss_dssp CCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSC-HHHHHHHHHSCCEEE
T ss_pred CCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcC-HHHHHHHhcCCEEEE
Confidence 7554432 1257899999999999999998766533 345677788876654
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-13 Score=108.63 Aligned_cols=90 Identities=12% Similarity=0.082 Sum_probs=66.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCC-C------------------CcEEEcCCCCCCCC-CCceeeEE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDS-L------------------PLVSRADPHNLPFF-DEAFDVAF 153 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~-~------------------~~~~~~d~~~~~~~-~~~fD~i~ 153 (209)
.++.+|||+|||+|..+..+++ .+..+|+|+|+|+. + +.+.++|+.++|.. .+.+|.+.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 6788999999999999999996 34468999999943 3 23778888887532 25566665
Q ss_pred cccc----hhhh--CHHHHHHHHHHhcccCcEEEEEE
Q 028410 154 TAHL----AEAL--FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 154 ~~~~----~~~~--~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
++.. ..+. ++..+++++.|+|||||.+++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 5421 1111 45779999999999999998843
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.1e-13 Score=110.59 Aligned_cols=111 Identities=14% Similarity=0.059 Sum_probs=86.0
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCC-------------CCcEEEcCCCCCCCCCCceeeEEcccc
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
..+.++.+|||||||+|..+..+++ .+..+++++|+++. .+.+..+|+. .+++ +||+|++.++
T Consensus 180 ~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~v 256 (348)
T 3lst_A 180 GDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKRI 256 (348)
T ss_dssp SCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEESC
T ss_pred CCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCC-CCCC--CCcEEEEehh
Confidence 3457889999999999999999988 45568999997421 2458889986 3444 8999999999
Q ss_pred hhhh-CH--HHHHHHHHHhcccCcEEEEEEecCC----------------------cccHHHHHHHhcccccc
Q 028410 158 AEAL-FP--SRFVGEMERTVKIGGVCMVLMEECA----------------------GREIKQIVELFRTSSFT 205 (209)
Q Consensus 158 ~~~~-~~--~~~l~~~~r~LkpgG~lil~~~~~~----------------------~~~~~~~~~l~~~~~~~ 205 (209)
.++. ++ .+++++++++|||||++++...... .....++.++++++||.
T Consensus 257 lh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~ 329 (348)
T 3lst_A 257 LHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLR 329 (348)
T ss_dssp GGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEE
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCc
Confidence 9888 44 5999999999999999988754221 12455677778877773
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.6e-13 Score=108.44 Aligned_cols=106 Identities=17% Similarity=0.169 Sum_probs=84.7
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC--------------cEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------------LVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~--------------~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
+.++.+|||+|||+|..+..+++.+. +|+|+|+++.++ .+..+|+.+. +++++||+|+++...+
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEECCHH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-CcCCCCCEEEECCcHH
Confidence 47889999999999999999999876 999999999854 4566666552 4567899999975444
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
+ ...++.++.++|||||++++.... ..+...+.+.+.+.||.
T Consensus 196 ~--~~~~l~~~~~~LkpgG~lils~~~--~~~~~~v~~~l~~~Gf~ 237 (254)
T 2nxc_A 196 L--HAALAPRYREALVPGGRALLTGIL--KDRAPLVREAMAGAGFR 237 (254)
T ss_dssp H--HHHHHHHHHHHEEEEEEEEEEEEE--GGGHHHHHHHHHHTTCE
T ss_pred H--HHHHHHHHHHHcCCCCEEEEEeec--cCCHHHHHHHHHHCCCE
Confidence 2 478899999999999998876443 34678888899888873
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=109.83 Aligned_cols=92 Identities=16% Similarity=0.113 Sum_probs=76.1
Q ss_pred cCCC-CCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCC----------------CcEEEcCCCCCC-CCCCceeeEE
Q 028410 93 LLFN-HSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSL----------------PLVSRADPHNLP-FFDEAFDVAF 153 (209)
Q Consensus 93 ~~~~-~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~-~~~~~fD~i~ 153 (209)
...+ +.+|||+|||+|..+..+++ .+..+++++|+ +.+ +.+..+|+.+.+ +.++.||+|+
T Consensus 175 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~ 253 (352)
T 3mcz_A 175 GVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVM 253 (352)
T ss_dssp GGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEE
T ss_pred CCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEE
Confidence 3455 89999999999999999988 45569999999 542 458899998876 2356799999
Q ss_pred cccchhhhC-H--HHHHHHHHHhcccCcEEEEEEe
Q 028410 154 TAHLAEALF-P--SRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 154 ~~~~~~~~~-~--~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+.++.++.. + ..++++++++|||||++++...
T Consensus 254 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (352)
T 3mcz_A 254 LNDCLHYFDAREAREVIGHAAGLVKPGGALLILTM 288 (352)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 999988873 3 7899999999999999988754
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-13 Score=107.96 Aligned_cols=83 Identities=12% Similarity=0.085 Sum_probs=61.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcEEEc-----------CCC-----CCC---CCCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRA-----------DPH-----NLP---FFDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~~~~-----------d~~-----~~~---~~~~~fD~i~~~ 155 (209)
.++.+|||+|||+|.++..+++.|..+|+|+|+|+.|++.... ++. +++ +...+||+++++
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~ 115 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFIS 115 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSC
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhh
Confidence 4567999999999999999999876699999999999873111 111 111 223455555542
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
...++.++.|+|||||.+++.+
T Consensus 116 -------l~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 116 -------LDLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp -------GGGTHHHHHHHSCTTCEEEEEE
T ss_pred -------HHHHHHHHHHhccCCCEEEEEE
Confidence 2778999999999999998874
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.7e-13 Score=106.67 Aligned_cols=105 Identities=10% Similarity=0.016 Sum_probs=77.9
Q ss_pred CCCeEEEEcCCCChhHHHHHhc-----CCceEEEecCCCCCC----------cEEEcCCCCC---CCCC-CceeeEEccc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSI-----GVADVTGVELMDSLP----------LVSRADPHNL---PFFD-EAFDVAFTAH 156 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~-----~~~~v~~vD~s~~~~----------~~~~~d~~~~---~~~~-~~fD~i~~~~ 156 (209)
++.+|||+|||+|..+..+++. +.++|+|+|+++.++ .++++|+.+. +..+ .+||+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 4679999999999999999875 346999999999864 4788999884 5434 4799999854
Q ss_pred chhhhCHHHHHHHHHH-hcccCcEEEEEEecC--CcccHHHHHHHhccc
Q 028410 157 LAEALFPSRFVGEMER-TVKIGGVCMVLMEEC--AGREIKQIVELFRTS 202 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r-~LkpgG~lil~~~~~--~~~~~~~~~~l~~~~ 202 (209)
. |.+...++.++.+ +|||||++++....+ .......+.++++..
T Consensus 161 ~--~~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~ 207 (236)
T 2bm8_A 161 A--HANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAF 207 (236)
T ss_dssp S--CSSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTT
T ss_pred c--hHhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhC
Confidence 3 2477889999997 999999987753211 011223566666655
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.1e-14 Score=109.24 Aligned_cols=107 Identities=14% Similarity=0.137 Sum_probs=71.5
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCcEEEcC--------------CCCCCCCC-----CceeeEEc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPLVSRAD--------------PHNLPFFD-----EAFDVAFT 154 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~~~~~d--------------~~~~~~~~-----~~fD~i~~ 154 (209)
.++.+|||+|||+|..+..+++. +..+++|+|+++.+++..... +.+ ++++ ++||+|++
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~~ 107 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIERAERGRPWHAIVS 107 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-HHHHHHHTTCCBSEEEE
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhhccCcccEEEE
Confidence 67899999999999999999985 345999999999977643333 222 3444 89999999
Q ss_pred ccch------hhhC---------------------HHHHHHHHHHhcccCcE-EEEEEecCCcccHHHHHHHhc--cccc
Q 028410 155 AHLA------EALF---------------------PSRFVGEMERTVKIGGV-CMVLMEECAGREIKQIVELFR--TSSF 204 (209)
Q Consensus 155 ~~~~------~~~~---------------------~~~~l~~~~r~LkpgG~-lil~~~~~~~~~~~~~~~l~~--~~~~ 204 (209)
+... +++. ...+++++.++|||||. +++.+. ..+...+.+++. ..+|
T Consensus 108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~l~~~~~gf 184 (215)
T 4dzr_A 108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG---HNQADEVARLFAPWRERG 184 (215)
T ss_dssp CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT---TSCHHHHHHHTGGGGGGT
T ss_pred CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC---CccHHHHHHHHHHhhcCC
Confidence 5211 1110 16788999999999999 444443 456777888888 7776
Q ss_pred c
Q 028410 205 T 205 (209)
Q Consensus 205 ~ 205 (209)
.
T Consensus 185 ~ 185 (215)
T 4dzr_A 185 F 185 (215)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=7.9e-13 Score=111.32 Aligned_cols=89 Identities=16% Similarity=0.100 Sum_probs=75.9
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
...++.+|||+|||+|..+..+++ .+..+++++|+ +.+ +.++.+|+.+.++++. |+|++.
T Consensus 187 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~ 263 (359)
T 1x19_A 187 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA--DAVLFC 263 (359)
T ss_dssp CCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC--SEEEEE
T ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC--CEEEEe
Confidence 457889999999999999999998 45569999999 663 4578999988877654 999999
Q ss_pred cchhhh-C--HHHHHHHHHHhcccCcEEEEEE
Q 028410 156 HLAEAL-F--PSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 156 ~~~~~~-~--~~~~l~~~~r~LkpgG~lil~~ 184 (209)
++.++. + ..++++++.++|||||++++..
T Consensus 264 ~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 264 RILYSANEQLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp SCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred chhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 988877 4 5889999999999999998876
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.43 E-value=5.2e-14 Score=106.64 Aligned_cols=95 Identities=15% Similarity=0.149 Sum_probs=74.1
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------------cEEEcCCCC-CCCCCCceeeEEccc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------------LVSRADPHN-LPFFDEAFDVAFTAH 156 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------------~~~~~d~~~-~~~~~~~fD~i~~~~ 156 (209)
..++.+|||+|||+|..+..+++.+..+|+|+|+++.++ .++.+|+.+ ++..+++||+|+++.
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 357889999999999999999988667999999998643 466777766 344457799999975
Q ss_pred chhhhCHHHHHHHHH--HhcccCcEEEEEEecCC
Q 028410 157 LAEALFPSRFVGEME--RTVKIGGVCMVLMEECA 188 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~--r~LkpgG~lil~~~~~~ 188 (209)
..+.....+.+..+. ++|||||.+++......
T Consensus 109 ~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 109 PYAKETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp SSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred CCCcchHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 543334567777777 99999999988877643
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.5e-13 Score=106.26 Aligned_cols=108 Identities=12% Similarity=0.234 Sum_probs=78.9
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC---------------------CcEEEcCCCC-CC--CCCCc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL---------------------PLVSRADPHN-LP--FFDEA 148 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~---------------------~~~~~~d~~~-~~--~~~~~ 148 (209)
..++.+|||||||+|.++..+++. +..+++|+|+|+.+ +.++++|+.+ ++ +++++
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence 367789999999999999999984 55699999998643 3478899887 66 78899
Q ss_pred eeeEEcccchhhh---------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccc
Q 028410 149 FDVAFTAHLAEAL---------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSS 203 (209)
Q Consensus 149 fD~i~~~~~~~~~---------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~ 203 (209)
||.|+++....+. ....+++++.++|||||.+++.+.. ......+.+.+...+
T Consensus 124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~--~~~~~~~~~~l~~~~ 185 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV--LELHDWMCTHFEEHP 185 (235)
T ss_dssp EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC--HHHHHHHHHHHHTST
T ss_pred eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC--HHHHHHHHHHHHHCC
Confidence 9999875322211 1147999999999999998877653 234445555555443
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=6.3e-13 Score=112.25 Aligned_cols=109 Identities=21% Similarity=0.149 Sum_probs=84.2
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCC----------------CCcEEEcCCCCCCCCCCceeeEEccc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
+.++.+|||+|||+|..+..+++. +..+++++|+ +. .+.+..+|+.+ +++. .||+|++.+
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~ 256 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVVLLSF 256 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEEEEES
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-CCCEEEEec
Confidence 467899999999999999999984 4469999998 54 24588899876 4444 499999999
Q ss_pred chhhh-CH--HHHHHHHHHhcccCcEEEEEEe--cC-C---------------------cccHHHHHHHhcccccc
Q 028410 157 LAEAL-FP--SRFVGEMERTVKIGGVCMVLME--EC-A---------------------GREIKQIVELFRTSSFT 205 (209)
Q Consensus 157 ~~~~~-~~--~~~l~~~~r~LkpgG~lil~~~--~~-~---------------------~~~~~~~~~l~~~~~~~ 205 (209)
+.++. ++ .++++++.++|||||++++... .. + .....++.+++.++||.
T Consensus 257 vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~ 332 (374)
T 1qzz_A 257 VLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLA 332 (374)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEE
T ss_pred cccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCc
Confidence 88887 44 4899999999999999888765 21 1 12556677788888873
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.42 E-value=6e-13 Score=112.36 Aligned_cols=89 Identities=12% Similarity=0.167 Sum_probs=74.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCC----------------CCcEEEcCCCCC--CCCCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDS----------------LPLVSRADPHNL--PFFDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~----------------~~~~~~~d~~~~--~~~~~~fD~i~~~ 155 (209)
.+..+|||||||+|..+..+++ .+..+++++|+ +. .+.++.+|+.+. |++ ++||+|++.
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 4678999999999999999988 45569999998 54 245889999886 565 789999999
Q ss_pred cchhhh-CH--HHHHHHHHHhcccCcEEEEEEe
Q 028410 156 HLAEAL-FP--SRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 156 ~~~~~~-~~--~~~l~~~~r~LkpgG~lil~~~ 185 (209)
++.++. ++ .+++++++++|||||++++...
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 256 QFLDCFSEEEVISILTRVAQSIGKDSKVYIMET 288 (363)
T ss_dssp SCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence 988876 33 5789999999999999988653
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=7.2e-13 Score=112.17 Aligned_cols=87 Identities=11% Similarity=0.093 Sum_probs=73.6
Q ss_pred CCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCC---------CCcEEEcCCCCCCCCCCceeeEEcccchhhh-C
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDS---------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL-F 162 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~---------~~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~ 162 (209)
+.++.+|||+|||+|..+..+++ .+..+++++|+ +. .+.++.+|+.+ ++++ ||+|++.++.++. +
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~d 282 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWSD 282 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCCC--EEEEEEESSGGGSCH
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhcCCCEEEeCCccc-CCCC--CCEEEEecccccCCH
Confidence 56789999999999999999998 44568999997 43 24588899987 6654 9999999998888 5
Q ss_pred HH--HHHHHHHHhcccCcEEEEEE
Q 028410 163 PS--RFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 163 ~~--~~l~~~~r~LkpgG~lil~~ 184 (209)
+. .++++++++|||||++++..
T Consensus 283 ~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 283 EKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 55 89999999999999998874
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.1e-13 Score=106.41 Aligned_cols=107 Identities=13% Similarity=0.102 Sum_probs=87.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCC----------------CCcEEEcCCCCCCCCCCceeeEEc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFT 154 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~i~~ 154 (209)
.+.++.+|||+|||+|..+..+++. + ..+++++|+++. .+.+..+|+.+.++++++||+|++
T Consensus 93 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~ 172 (258)
T 2pwy_A 93 DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVAL 172 (258)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEE
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEE
Confidence 5688999999999999999999985 3 469999999874 345788898888788889999998
Q ss_pred ccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
+. .++..++.++.++|||||.+++.... ..+...+.+.++..+|.
T Consensus 173 ~~----~~~~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~~l~~~gf~ 217 (258)
T 2pwy_A 173 DL----MEPWKVLEKAALALKPDRFLVAYLPN--ITQVLELVRAAEAHPFR 217 (258)
T ss_dssp ES----SCGGGGHHHHHHHEEEEEEEEEEESC--HHHHHHHHHHHTTTTEE
T ss_pred CC----cCHHHHHHHHHHhCCCCCEEEEEeCC--HHHHHHHHHHHHHCCCc
Confidence 31 25678999999999999998877654 34667777888877774
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.41 E-value=9.9e-14 Score=113.33 Aligned_cols=134 Identities=16% Similarity=0.153 Sum_probs=84.6
Q ss_pred hccCchhHhhHhHHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecC-CCCCCc------------
Q 028410 67 RLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVEL-MDSLPL------------ 133 (209)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~-s~~~~~------------ 133 (209)
..|....|.........+.. .....++.+|||+|||+|..+..+++.+..+|+++|+ ++.+++
T Consensus 54 ~~~g~~~~~~~~~l~~~l~~----~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~ 129 (281)
T 3bzb_A 54 PLWTSHVWSGARALADTLCW----QPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTAN 129 (281)
T ss_dssp --------CHHHHHHHHHHH----CGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC-
T ss_pred CCCCceeecHHHHHHHHHHh----cchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhh
Confidence 56666666433332222222 2233577899999999999999999887669999999 665432
Q ss_pred -------------EEEcCCCCCC--C----CCCceeeEEcccchhhh-CHHHHHHHHHHhcc---c--CcEEEEEEecCC
Q 028410 134 -------------VSRADPHNLP--F----FDEAFDVAFTAHLAEAL-FPSRFVGEMERTVK---I--GGVCMVLMEECA 188 (209)
Q Consensus 134 -------------~~~~d~~~~~--~----~~~~fD~i~~~~~~~~~-~~~~~l~~~~r~Lk---p--gG~lil~~~~~~ 188 (209)
+...+..+.. + ++++||+|++.++.++. +...+++++.++|| | ||.+++++....
T Consensus 130 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~ 209 (281)
T 3bzb_A 130 SCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHR 209 (281)
T ss_dssp ---------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--
T ss_pred hcccccCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeee
Confidence 2222222211 1 35789999998877766 78999999999999 9 999887765532
Q ss_pred c---ccHHHHHHHhcccc-c
Q 028410 189 G---REIKQIVELFRTSS-F 204 (209)
Q Consensus 189 ~---~~~~~~~~l~~~~~-~ 204 (209)
. .....+.+.++..| |
T Consensus 210 ~~~~~~~~~~~~~l~~~G~f 229 (281)
T 3bzb_A 210 PHLAERDLAFFRLVNADGAL 229 (281)
T ss_dssp ------CTHHHHHHHHSTTE
T ss_pred cccchhHHHHHHHHHhcCCE
Confidence 1 22445666677766 5
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.41 E-value=4.1e-13 Score=109.10 Aligned_cols=107 Identities=20% Similarity=0.185 Sum_probs=84.8
Q ss_pred cccCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCC----------------CCcEEEcCCCCCCCCCCceeeE
Q 028410 91 KSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVA 152 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~i 152 (209)
...+.++.+|||+|||+|..+..+++. +..+|+++|+++. .+.+..+|+.+ ++++++||+|
T Consensus 105 ~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~V 183 (275)
T 1yb2_A 105 RCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAV 183 (275)
T ss_dssp -CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEE
T ss_pred HcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEE
Confidence 335688899999999999999999985 3469999999874 24577888877 5677899999
Q ss_pred EcccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+++ . .++..+++++.++|||||.+++.+.. ..+...+.+.+...+|
T Consensus 184 i~~-~---~~~~~~l~~~~~~LkpgG~l~i~~~~--~~~~~~~~~~l~~~Gf 229 (275)
T 1yb2_A 184 IAD-I---PDPWNHVQKIASMMKPGSVATFYLPN--FDQSEKTVLSLSASGM 229 (275)
T ss_dssp EEC-C---SCGGGSHHHHHHTEEEEEEEEEEESS--HHHHHHHHHHSGGGTE
T ss_pred EEc-C---cCHHHHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHHCCC
Confidence 982 1 25788999999999999998887754 3456677788887776
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-13 Score=108.26 Aligned_cols=105 Identities=16% Similarity=0.206 Sum_probs=84.5
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEE
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAF 153 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~ 153 (209)
....++.+|||+|||+|..+..+++. + ..+++++|+++.+ +.+..+|+.+. +++++||+|+
T Consensus 89 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~v~ 167 (255)
T 3mb5_A 89 AGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEENVDHVI 167 (255)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCCSEEEEE
T ss_pred hCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCCCcCEEE
Confidence 35688999999999999999999985 3 5799999999762 45778888754 6788999999
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccc
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSS 203 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~ 203 (209)
++. .++..+++++.++|||||.+++.... ..+...+.+.++..+
T Consensus 168 ~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~~l~~~g 211 (255)
T 3mb5_A 168 LDL----PQPERVVEHAAKALKPGGFFVAYTPC--SNQVMRLHEKLREFK 211 (255)
T ss_dssp ECS----SCGGGGHHHHHHHEEEEEEEEEEESS--HHHHHHHHHHHHHTG
T ss_pred ECC----CCHHHHHHHHHHHcCCCCEEEEEECC--HHHHHHHHHHHHHcC
Confidence 831 25678899999999999998776543 456777888888877
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=6.1e-13 Score=108.09 Aligned_cols=107 Identities=11% Similarity=0.156 Sum_probs=82.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCC---------------CcEEEcCCCCCCCCCCceeeEEccc--
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAH-- 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~i~~~~-- 156 (209)
.++.+|||+|||+|..+..+++ .+..+|+++|+|+.+ +.++++|+.+. +++++||+|+++.
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~-~~~~~fD~Iv~npPy 186 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-LAGQQFAMIVSNPPY 186 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-GTTCCEEEEEECCCC
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh-cccCCccEEEECCCC
Confidence 5678999999999999999997 555699999999874 34777887763 4467999999972
Q ss_pred -----------chhh------------h-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 157 -----------LAEA------------L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 157 -----------~~~~------------~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
+.++ + +...++.++.++|||||.+++... ..+...+.+++++.||.
T Consensus 187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~---~~~~~~~~~~l~~~Gf~ 256 (276)
T 2b3t_A 187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG---WQQGEAVRQAFILAGYH 256 (276)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC---SSCHHHHHHHHHHTTCT
T ss_pred CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC---chHHHHHHHHHHHCCCc
Confidence 1111 1 347788999999999999887654 45677788888888773
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-13 Score=106.72 Aligned_cols=92 Identities=15% Similarity=0.051 Sum_probs=73.4
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCC-CCCCCCceeeEEcccchh
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHN-LPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~-~~~~~~~fD~i~~~~~~~ 159 (209)
++.+|||+|||+|..+..++..+..+|+++|+|+.++ .++++|+.+ ++..+++||+|+++..++
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 5789999999999999988776656999999998744 467778766 455678999999975533
Q ss_pred hhCHHHHHHHHHH--hcccCcEEEEEEecC
Q 028410 160 ALFPSRFVGEMER--TVKIGGVCMVLMEEC 187 (209)
Q Consensus 160 ~~~~~~~l~~~~r--~LkpgG~lil~~~~~ 187 (209)
..+...+++++.+ +|||||.+++.....
T Consensus 134 ~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 134 RGLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp TTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred CCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 3367788888876 599999998887654
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-13 Score=105.49 Aligned_cols=94 Identities=14% Similarity=0.058 Sum_probs=74.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCCC----CCCCCceeeEEc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNL----PFFDEAFDVAFT 154 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~----~~~~~~fD~i~~ 154 (209)
.++.+|||+|||+|..+..+++.+..+|+|+|+++.+ +.++++|+.+. ++++++||+|++
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 122 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 122 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence 5788999999999999999888766799999999864 34777887662 223689999999
Q ss_pred ccchhhhCHHHHHHHH--HHhcccCcEEEEEEecCC
Q 028410 155 AHLAEALFPSRFVGEM--ERTVKIGGVCMVLMEECA 188 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~--~r~LkpgG~lil~~~~~~ 188 (209)
+...+..+....+..+ .++|||||.+++......
T Consensus 123 ~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 123 DPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp CCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred CCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence 7664434677788888 889999999988877643
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2e-12 Score=106.86 Aligned_cols=92 Identities=15% Similarity=0.079 Sum_probs=68.7
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecC----CCCC-------------CcEEEc-CCCCCCCCCCceeeEE
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVEL----MDSL-------------PLVSRA-DPHNLPFFDEAFDVAF 153 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~----s~~~-------------~~~~~~-d~~~~~~~~~~fD~i~ 153 (209)
..++++.+|||+|||+|.++..+++. ++|+|+|+ ++.+ +.++++ |+.+++ +++||+|+
T Consensus 78 ~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~ 153 (305)
T 2p41_A 78 NLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCDTLL 153 (305)
T ss_dssp TSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCSEEE
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCCEEE
Confidence 45678899999999999999999988 58999998 4422 225566 666654 57999999
Q ss_pred cccch---hhh-CHH---HHHHHHHHhcccCcEEEEEEecC
Q 028410 154 TAHLA---EAL-FPS---RFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 154 ~~~~~---~~~-~~~---~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
|.... ++. +.. .++.++.++|||||.+++.+...
T Consensus 154 sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 154 CDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp ECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred ECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 96432 122 222 57899999999999988765544
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.5e-13 Score=109.14 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=70.9
Q ss_pred CCCeEEEEcCCCCh----hHHHHHhc-C----CceEEEecCCCCCC----------------------------------
Q 028410 96 NHSKVLCVSAGAGH----EVMAFNSI-G----VADVTGVELMDSLP---------------------------------- 132 (209)
Q Consensus 96 ~~~~iLDiGcG~G~----~~~~la~~-~----~~~v~~vD~s~~~~---------------------------------- 132 (209)
++.+|||+|||||. .+..+++. + ..+|+|+|+|+.++
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 46899999999998 45555553 3 24899999987633
Q ss_pred ------------cEEEcCCCCCCCC-CCceeeEEcccchhhhCH---HHHHHHHHHhcccCcEEEEEEec
Q 028410 133 ------------LVSRADPHNLPFF-DEAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 133 ------------~~~~~d~~~~~~~-~~~fD~i~~~~~~~~~~~---~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.|.++|+.+.|++ .++||+|+|.++..++++ .++++++++.|||||++++...+
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~sE 254 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSE 254 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEecc
Confidence 3556677776665 578999999999888854 68999999999999998775444
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.8e-12 Score=107.70 Aligned_cols=88 Identities=10% Similarity=0.049 Sum_probs=73.4
Q ss_pred CCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCC---------CCcEEEcCCCCCCCCCCceeeEEcccchhhhC-
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDS---------LPLVSRADPHNLPFFDEAFDVAFTAHLAEALF- 162 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~---------~~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~- 162 (209)
+.+..+|||||||+|..+..+++ .+..+++++|+ +. .++++.+|+.+ +++++ |+|++.++.|+..
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~ 276 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAFSGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSD 276 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGBCH
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhcCCCEEEecCCCC-CCCCC--CEEEEechhhcCCH
Confidence 56789999999999999999988 56668999998 43 34588999987 67654 9999999888773
Q ss_pred H--HHHHHHHHHhcccCcEEEEEEe
Q 028410 163 P--SRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 163 ~--~~~l~~~~r~LkpgG~lil~~~ 185 (209)
. .+++++++++|||||++++...
T Consensus 277 ~~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 277 EHCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 3 5789999999999999988754
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.1e-13 Score=120.11 Aligned_cols=90 Identities=10% Similarity=0.072 Sum_probs=77.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcC--CceEEEecCCCCC---------------------CcEEEcCCCCCCCCCCceee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIG--VADVTGVELMDSL---------------------PLVSRADPHNLPFFDEAFDV 151 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~--~~~v~~vD~s~~~---------------------~~~~~~d~~~~~~~~~~fD~ 151 (209)
.++.+|||+|||+|..+..+++.+ ..+|+|+|+|+.+ +.++++|+.++++++++||+
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl 799 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI 799 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence 478999999999999999999964 2599999999863 34789999999999999999
Q ss_pred EEcccchhhhC-H--HHHHHHHHHhcccCcEEEEEEe
Q 028410 152 AFTAHLAEALF-P--SRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 152 i~~~~~~~~~~-~--~~~l~~~~r~LkpgG~lil~~~ 185 (209)
|++..+.+|+. + ..+++++.++|||| .+++.+.
T Consensus 800 VV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 800 GTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 99999999994 3 35899999999999 6666654
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=8.7e-13 Score=103.99 Aligned_cols=89 Identities=19% Similarity=0.154 Sum_probs=73.3
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-------------CcEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------PLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~-------------~~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
...++.+|||+|||+|..+..+++.+ .+|+++|+++.+ +.++.+|+.+...++++||+|++....+
T Consensus 67 ~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~ 145 (231)
T 1vbf_A 67 DLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAP 145 (231)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBS
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCcHH
Confidence 45788999999999999999999976 699999999863 4577888877333468999999987777
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
++. .++.++|||||.+++.+...
T Consensus 146 ~~~-----~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 146 TLL-----CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp SCC-----HHHHHTEEEEEEEEEEECSS
T ss_pred HHH-----HHHHHHcCCCcEEEEEEcCC
Confidence 663 36899999999999987654
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.38 E-value=3e-13 Score=105.06 Aligned_cols=93 Identities=19% Similarity=0.120 Sum_probs=71.5
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC-----------------cEEEcCCCCCC--CCCCc-eeeEEcc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-----------------LVSRADPHNLP--FFDEA-FDVAFTA 155 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~-----------------~~~~~d~~~~~--~~~~~-fD~i~~~ 155 (209)
++.+|||+|||+|..+..++..+..+|+|+|+|+.++ +++++|+.+.. +++++ ||+|+++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 6789999999999999987776667999999997633 46677766532 23678 9999997
Q ss_pred cchhhhCHHHHHHHH--HHhcccCcEEEEEEecCC
Q 028410 156 HLAEALFPSRFVGEM--ERTVKIGGVCMVLMEECA 188 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~--~r~LkpgG~lil~~~~~~ 188 (209)
...+.-+...++.++ .++|||||.+++......
T Consensus 133 ~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 133 PPFHFNLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp CCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred CCCCCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 553322567888888 668999999988876543
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.4e-12 Score=106.57 Aligned_cols=91 Identities=18% Similarity=0.126 Sum_probs=73.4
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
...++.+|||+|||+|..+..+++. +..+++++|+ +.+ +.++.+|+.+ +++. .||+|++.
T Consensus 180 ~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~ 256 (360)
T 1tw3_A 180 DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILS 256 (360)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEE
T ss_pred CCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEc
Confidence 3467889999999999999999884 4458999998 652 4578888876 3444 49999999
Q ss_pred cchhhh-CH--HHHHHHHHHhcccCcEEEEEEec
Q 028410 156 HLAEAL-FP--SRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 156 ~~~~~~-~~--~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
++.++. ++ .++++++.++|||||++++....
T Consensus 257 ~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 257 FVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 988877 33 48999999999999999887543
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=109.21 Aligned_cols=88 Identities=9% Similarity=0.060 Sum_probs=73.8
Q ss_pred CCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCC---------CcEEEcCCCCCCCCCCceeeEEcccchhhh-C
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSL---------PLVSRADPHNLPFFDEAFDVAFTAHLAEAL-F 162 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~---------~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~ 162 (209)
+.+..+|||+|||+|..+..+++ .+..+++++|+ +.+ +.+..+|+.+ ++++ ||+|++.++.++. +
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~d 261 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDMFT-SIPN--ADAVLLKYILHNWTD 261 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCTTT-CCCC--CSEEEEESCGGGSCH
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccCCCcEEEeccccC-CCCC--ccEEEeehhhccCCH
Confidence 46779999999999999999998 45569999998 543 4578899876 5553 9999999998888 5
Q ss_pred HH--HHHHHHHHhccc---CcEEEEEEe
Q 028410 163 PS--RFVGEMERTVKI---GGVCMVLME 185 (209)
Q Consensus 163 ~~--~~l~~~~r~Lkp---gG~lil~~~ 185 (209)
+. +++++++++||| ||++++...
T Consensus 262 ~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 262 KDCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp HHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 55 899999999999 999988754
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-12 Score=103.32 Aligned_cols=105 Identities=19% Similarity=0.145 Sum_probs=81.5
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC-------------------CcEEEcCCCCC-------CCCC
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL-------------------PLVSRADPHNL-------PFFD 146 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~-------------------~~~~~~d~~~~-------~~~~ 146 (209)
..++.+|||+|||+|..+..+++. +..+|+++|+++.+ +.++++|+.+. ++++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 467889999999999999999985 44699999998751 45789999887 3667
Q ss_pred CceeeEEcccchh----------------h--h-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcc
Q 028410 147 EAFDVAFTAHLAE----------------A--L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT 201 (209)
Q Consensus 147 ~~fD~i~~~~~~~----------------~--~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~ 201 (209)
++||+|+++.-.. + . ....+++++.++|||||.++++... .....+.+.+++
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~l~~ 184 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP---QSVAEIIAACGS 184 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG---GGHHHHHHHHTT
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH---HHHHHHHHHHHh
Confidence 8999999972111 1 1 3678999999999999999887764 356667776665
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-13 Score=121.71 Aligned_cols=92 Identities=12% Similarity=0.108 Sum_probs=75.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCC--CCCCCceeeEEcccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNL--PFFDEAFDVAFTAHL 157 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~--~~~~~~fD~i~~~~~ 157 (209)
..+.+|||||||.|.++..||+.|. +|+|||+++.++ ++.+++++++ ++++++||+|+|..+
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 5678999999999999999999986 999999998744 3677888776 466789999999999
Q ss_pred hhhh-CHHH--HHHHHHHhcccCcEEEEEEecC
Q 028410 158 AEAL-FPSR--FVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 158 ~~~~-~~~~--~l~~~~r~LkpgG~lil~~~~~ 187 (209)
.+|+ ++.. .+..+.+.|+++|..++..-..
T Consensus 144 ~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~ 176 (569)
T 4azs_A 144 FHHIVHLHGIDEVKRLLSRLADVTQAVILELAV 176 (569)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred hhcCCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence 9999 6643 3456788899988877665443
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=6e-13 Score=111.59 Aligned_cols=107 Identities=18% Similarity=0.149 Sum_probs=82.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC--------------cEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP--------------LVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~--------------~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
.++.+|||+|||+|..+..+++. +..+|+++|+|+.++ .+..+|+.+.+ +++||+|+++..++
T Consensus 195 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Iv~~~~~~ 272 (343)
T 2pjd_A 195 HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV--KGRFDMIISNPPFH 272 (343)
T ss_dssp TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC--CSCEEEEEECCCCC
T ss_pred CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc--cCCeeEEEECCCcc
Confidence 45779999999999999999985 345999999998744 36677776643 78999999986554
Q ss_pred h-----h-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 160 A-----L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 160 ~-----~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+ . +...+++++.++|||||.++++...... ....+...|+.+..
T Consensus 273 ~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~~l~~~f~~~~~ 322 (343)
T 2pjd_A 273 DGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLP-YPDVLDETFGFHEV 322 (343)
T ss_dssp SSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSS-HHHHHHHHHSCCEE
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCC-cHHHHHHhcCceEE
Confidence 3 2 5689999999999999999988776432 23455666665543
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-12 Score=108.20 Aligned_cols=87 Identities=21% Similarity=0.194 Sum_probs=71.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC---------------CCcEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
-++.+|||||||+|.++...++.|..+|+|+|.|+. .+.++.+|++++.++ ++||+|++..+..
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~ 160 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGY 160 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBT
T ss_pred cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeecccc
Confidence 467899999999999999888888889999999863 234889999998876 6899999953322
Q ss_pred hh----CHHHHHHHHHHhcccCcEEEE
Q 028410 160 AL----FPSRFVGEMERTVKIGGVCMV 182 (209)
Q Consensus 160 ~~----~~~~~l~~~~r~LkpgG~lil 182 (209)
.+ ....++....|.|||||.++-
T Consensus 161 ~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 161 GLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp TBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred cccccchhhhHHHHHHhhCCCCceECC
Confidence 22 568888888999999998753
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.6e-12 Score=103.30 Aligned_cols=106 Identities=23% Similarity=0.275 Sum_probs=83.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCC------------------CCcEEEcCCCCCCCCCCceeeE
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS------------------LPLVSRADPHNLPFFDEAFDVA 152 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~------------------~~~~~~~d~~~~~~~~~~fD~i 152 (209)
.+.++.+|||+|||+|..+..+++. +..+++++|+++. .+.+..+|+.+.++++++||+|
T Consensus 96 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v 175 (280)
T 1i9g_A 96 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRA 175 (280)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEE
T ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEE
Confidence 5688999999999999999999983 3569999999864 2457788888888878899999
Q ss_pred EcccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcc-ccc
Q 028410 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT-SSF 204 (209)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~-~~~ 204 (209)
+++. .++..++.++.++|||||.+++.+.. ..+...+.+.++. .+|
T Consensus 176 ~~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~--~~~~~~~~~~l~~~~~f 222 (280)
T 1i9g_A 176 VLDM----LAPWEVLDAVSRLLVAGGVLMVYVAT--VTQLSRIVEALRAKQCW 222 (280)
T ss_dssp EEES----SCGGGGHHHHHHHEEEEEEEEEEESS--HHHHHHHHHHHHHHSSB
T ss_pred EECC----cCHHHHHHHHHHhCCCCCEEEEEeCC--HHHHHHHHHHHHhcCCc
Confidence 9832 25778999999999999998887654 3455556665554 444
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-13 Score=104.80 Aligned_cols=89 Identities=8% Similarity=0.007 Sum_probs=71.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcccchh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
.+..+|||+|||+|.++..++.. +..+|+++|+|+.|++ +...|.... .+.++||+|+...+.|
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~LH 126 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKMLP 126 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCHH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHhhHHH
Confidence 77999999999999999999874 5569999999999775 233444333 4578999999999999
Q ss_pred hh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 160 AL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 160 ~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
++ +.+..+.++.+.|||||.+ +.+.
T Consensus 127 lL~~~~~al~~v~~~L~pggvf-ISfp 152 (200)
T 3fzg_A 127 VLKQQDVNILDFLQLFHTQNFV-ISFP 152 (200)
T ss_dssp HHHHTTCCHHHHHHTCEEEEEE-EEEE
T ss_pred hhhhhHHHHHHHHHHhCCCCEE-EEeC
Confidence 99 5567788999999999985 4444
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-12 Score=101.97 Aligned_cols=90 Identities=20% Similarity=0.127 Sum_probs=71.5
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcC--CceEEEecCCCCC---------------CcEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIG--VADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~--~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
...++.+|||+|||+|..+..+++.. ..+|+++|+++.+ +.+..+|+......+++||+|++.
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 153 (215)
T 2yxe_A 74 DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTT 153 (215)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEES
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEEC
Confidence 45788999999999999999999852 2599999999763 346777775432236789999998
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
...+++. .++.+.|||||.+++.+...
T Consensus 154 ~~~~~~~-----~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 154 AAGPKIP-----EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp SBBSSCC-----HHHHHTEEEEEEEEEEESSS
T ss_pred CchHHHH-----HHHHHHcCCCcEEEEEECCC
Confidence 7776653 48899999999999988754
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.1e-13 Score=110.36 Aligned_cols=110 Identities=20% Similarity=0.248 Sum_probs=81.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC-------------------CcEEEcCCCCCCC--CCCceeeE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL-------------------PLVSRADPHNLPF--FDEAFDVA 152 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~-------------------~~~~~~d~~~~~~--~~~~fD~i 152 (209)
.++.+|||+|||+|..+..+++. +..+|+++|+++.+ +.++.+|+.+.+. ++++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 56789999999999999999985 55799999999763 3466777666443 47899999
Q ss_pred Ecccchhhh-----CHHHHHHHHHHhcccCcEEEEEEecC--CcccHHHHHHHhccccc
Q 028410 153 FTAHLAEAL-----FPSRFVGEMERTVKIGGVCMVLMEEC--AGREIKQIVELFRTSSF 204 (209)
Q Consensus 153 ~~~~~~~~~-----~~~~~l~~~~r~LkpgG~lil~~~~~--~~~~~~~~~~l~~~~~~ 204 (209)
+++...... ...++++++.++|||||.+++..... .......+.+.+++.||
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF 232 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGF 232 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTC
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCC
Confidence 996443322 12689999999999999988876543 22355666677776666
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-12 Score=107.73 Aligned_cols=90 Identities=19% Similarity=0.144 Sum_probs=73.4
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCC---------------CcEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.++++.+|||+|||+|..+..+++. + .++|+|+|+|+.+ +.+..+|+.+.+.++++||+|++.
T Consensus 72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~ 151 (317)
T 1dl5_A 72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVT 151 (317)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred CCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEc
Confidence 5678999999999999999999985 3 2579999999863 457788888765567899999998
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
...+++. .++.+.|||||++++.+...
T Consensus 152 ~~~~~~~-----~~~~~~LkpgG~lvi~~~~~ 178 (317)
T 1dl5_A 152 VGVDEVP-----ETWFTQLKEGGRVIVPINLK 178 (317)
T ss_dssp SBBSCCC-----HHHHHHEEEEEEEEEEBCBG
T ss_pred CCHHHHH-----HHHHHhcCCCcEEEEEECCC
Confidence 7776664 57889999999998886543
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.33 E-value=5.1e-12 Score=100.94 Aligned_cols=108 Identities=15% Similarity=0.210 Sum_probs=78.1
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCC-----------------------CCcEEEcCCCC-CC--CCC
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-----------------------LPLVSRADPHN-LP--FFD 146 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~-----------------------~~~~~~~d~~~-~~--~~~ 146 (209)
+.++.+|||+|||+|.++..+++. +..+|+|+|+|+. .+.++.+|+.+ ++ +++
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 367889999999999999999985 4458999999864 24578899887 55 778
Q ss_pred CceeeEEcccchhhh---------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccc
Q 028410 147 EAFDVAFTAHLAEAL---------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSS 203 (209)
Q Consensus 147 ~~fD~i~~~~~~~~~---------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~ 203 (209)
+++|.|+...-..+. ....++.++.++|||||.+++.+.. ......+.+.+...+
T Consensus 127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~--~~~~~~~~~~~~~~~ 190 (246)
T 2vdv_E 127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV--KDLHEWMVKHLEEHP 190 (246)
T ss_dssp TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC--HHHHHHHHHHHHHST
T ss_pred cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc--HHHHHHHHHHHHhCc
Confidence 899999864211111 0158999999999999998886543 233344555554443
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.32 E-value=6.8e-12 Score=98.73 Aligned_cols=92 Identities=17% Similarity=0.199 Sum_probs=71.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCC-------------CCcEEEcCCCCCC---CCCCceeeEEc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS-------------LPLVSRADPHNLP---FFDEAFDVAFT 154 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~-------------~~~~~~~d~~~~~---~~~~~fD~i~~ 154 (209)
.+.++.+|||+|||+|..+..+++. | .++|+|+|+++. .+.++.+|+.+.. ..+++||+|++
T Consensus 70 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~ 149 (227)
T 1g8a_A 70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE 149 (227)
T ss_dssp CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEE
Confidence 3578899999999999999999984 3 469999999994 3457889988732 12468999998
Q ss_pred ccchhhhCH-HHHHHHHHHhcccCcEEEEEEec
Q 028410 155 AHLAEALFP-SRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 155 ~~~~~~~~~-~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
... ..+. ..++.++.++|||||.+++.+..
T Consensus 150 ~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 180 (227)
T 1g8a_A 150 DVA--QPTQAKILIDNAEVYLKRGGYGMIAVKS 180 (227)
T ss_dssp CCC--STTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CCC--CHhHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 543 2233 45599999999999999888543
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-12 Score=105.52 Aligned_cols=106 Identities=13% Similarity=0.197 Sum_probs=83.6
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFT 154 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~ 154 (209)
.+.++.+|||+|||+|..+..+++. + ..+++++|+++.+ +.+..+|+.+. +++++||+|++
T Consensus 109 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~ 187 (277)
T 1o54_A 109 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVDALFL 187 (277)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEEEEEE
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccCEEEE
Confidence 5678899999999999999999985 3 5699999998863 34677777766 66789999998
Q ss_pred ccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
+. .++..++.++.++|||||.+++.... ..+...+.+.++..+|.
T Consensus 188 ~~----~~~~~~l~~~~~~L~pgG~l~~~~~~--~~~~~~~~~~l~~~gf~ 232 (277)
T 1o54_A 188 DV----PDPWNYIDKCWEALKGGGRFATVCPT--TNQVQETLKKLQELPFI 232 (277)
T ss_dssp CC----SCGGGTHHHHHHHEEEEEEEEEEESS--HHHHHHHHHHHHHSSEE
T ss_pred CC----cCHHHHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHHCCCc
Confidence 32 25678899999999999998777654 34566777777777763
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.4e-12 Score=100.76 Aligned_cols=103 Identities=15% Similarity=0.240 Sum_probs=81.4
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
.+.++.+|||+|||+|..+..+++. ..+++++|+++.+ +.+..+|+.+..+++++||+|+++.
T Consensus 88 ~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 166 (248)
T 2yvl_A 88 NLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDV 166 (248)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECS
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEECC
Confidence 5578899999999999999999987 4699999999763 3467788877543677899999831
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccc
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTS 202 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~ 202 (209)
.++..+++++.++|||||.+++.... ..+...+.+.++..
T Consensus 167 ----~~~~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~~l~~~ 206 (248)
T 2yvl_A 167 ----REPWHYLEKVHKSLMEGAPVGFLLPT--ANQVIKLLESIENY 206 (248)
T ss_dssp ----SCGGGGHHHHHHHBCTTCEEEEEESS--HHHHHHHHHHSTTT
T ss_pred ----cCHHHHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHhh
Confidence 15678899999999999998887764 34566677776655
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.1e-12 Score=111.06 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=74.0
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCC---------------CCCcEEEcCCCCCCCCCCceeeEEcccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMD---------------SLPLVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~---------------~~~~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
...++.+|||+|||+|..+..+++.|..+|+|+|+|+ ..+.++.+|+.+++++ ++||+|+++.+
T Consensus 155 ~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~ 233 (480)
T 3b3j_A 155 TDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPM 233 (480)
T ss_dssp GGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCC
T ss_pred hhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCc
Confidence 3457889999999999999999988767999999997 1245889999988765 58999999876
Q ss_pred hhhh-C--HHHHHHHHHHhcccCcEEEEEE
Q 028410 158 AEAL-F--PSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 158 ~~~~-~--~~~~l~~~~r~LkpgG~lil~~ 184 (209)
.++. + ....+.++.+.|||||.+++..
T Consensus 234 ~~~~~~e~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 234 GYMLFNERMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp HHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred hHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 5555 2 3667778899999999987544
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=104.74 Aligned_cols=88 Identities=10% Similarity=0.057 Sum_probs=74.0
Q ss_pred CCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCC---------CCcEEEcCCCCCCCCCCceeeEEcccchhhhC-
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDS---------LPLVSRADPHNLPFFDEAFDVAFTAHLAEALF- 162 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~---------~~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~- 162 (209)
+.+..+|||||||+|..+..+++ .+..+++++|+ +. .+.++.+|+.+ +++++ |+|++.++.|+..
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d 274 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQFPGVTHVGGDMFK-EVPSG--DTILMKWILHDWSD 274 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGSCH
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhcCCeEEEeCCcCC-CCCCC--CEEEehHHhccCCH
Confidence 56789999999999999999988 56668999998 43 34588999988 77765 9999999888772
Q ss_pred --HHHHHHHHHHhcccCcEEEEEEe
Q 028410 163 --PSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 163 --~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
..+++++++++|||||++++...
T Consensus 275 ~~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 275 QHCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 36889999999999999988753
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-14 Score=114.62 Aligned_cols=107 Identities=15% Similarity=0.113 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEcccch
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
.++.+|||+|||+|..+..+++.+ .+|+|+|+|+.+ +.++++|+.+++ ++++||+|+++...
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPW 154 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCC
T ss_pred cCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCc
Confidence 478999999999999999999987 599999999863 347888888776 57899999998666
Q ss_pred hhh-CHHHHHHHHHHhcccCcEEEEEEe----------cCCcccHHHHHHHhcccc
Q 028410 159 EAL-FPSRFVGEMERTVKIGGVCMVLME----------ECAGREIKQIVELFRTSS 203 (209)
Q Consensus 159 ~~~-~~~~~l~~~~r~LkpgG~lil~~~----------~~~~~~~~~~~~l~~~~~ 203 (209)
++. ++...+.++.++|||||.+++... -+.......+..++...+
T Consensus 155 ~~~~~~~~~~~~~~~~L~pgG~~i~~~~~~~~~~~~~~lp~~~~~~~~~~~l~~~g 210 (241)
T 3gdh_A 155 GGPDYATAETFDIRTMMSPDGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGG 210 (241)
T ss_dssp SSGGGGGSSSBCTTTSCSSCHHHHHHHHHHHCSCEEEEEETTBCHHHHHHTTCTTC
T ss_pred CCcchhhhHHHHHHhhcCCcceeHHHHHHhhCCceEEECCCCCCHHHHHHHhccCC
Confidence 655 455567788889999998544321 122335566666665443
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-12 Score=108.97 Aligned_cols=91 Identities=20% Similarity=0.157 Sum_probs=69.8
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC------------------------cEEEcCCCCC--CC-
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP------------------------LVSRADPHNL--PF- 144 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~------------------------~~~~~d~~~~--~~- 144 (209)
.+.++.+|||+|||+|..+..+++ .|..+|+|+|+++.++ .++++|.... ++
T Consensus 239 ~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~ 318 (433)
T 1u2z_A 239 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVA 318 (433)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHH
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccc
Confidence 567899999999999999999998 4666899999987632 2445543322 22
Q ss_pred -CCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 145 -FDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 145 -~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
..++||+|+++.....-++...+.++.+.|||||++++.
T Consensus 319 ~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 319 ELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp HHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred cccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEe
Confidence 247899999875543336778899999999999997765
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.9e-13 Score=101.86 Aligned_cols=107 Identities=12% Similarity=0.088 Sum_probs=76.3
Q ss_pred cCCCCCeEEEEcCCCChh--HHHHHhcCCceEEEecCCCCCCcEEEcCCCCCCC---CCCceeeEEcccchhhh--CHHH
Q 028410 93 LLFNHSKVLCVSAGAGHE--VMAFNSIGVADVTGVELMDSLPLVSRADPHNLPF---FDEAFDVAFTAHLAEAL--FPSR 165 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~--~~~la~~~~~~v~~vD~s~~~~~~~~~d~~~~~~---~~~~fD~i~~~~~~~~~--~~~~ 165 (209)
.++++.+|||+|||.... +..+.+....+ ....+.+.++|+.++++ ++++||+|+++.+.+++ ++..
T Consensus 9 g~~~g~~vL~~~~g~v~vD~s~~ml~~a~~~------~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~ 82 (176)
T 2ld4_A 9 GISAGQFVAVVWDKSSPVEALKGLVDKLQAL------TGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAE 82 (176)
T ss_dssp TCCTTSEEEEEECTTSCHHHHHHHHHHHHHH------TTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCCHH
T ss_pred CCCCCCEEEEecCCceeeeCCHHHHHHHHHh------cccCcEEEEechhcCccccCCCCCEeEEEECChhhhcccCHHH
Confidence 458899999999997420 11111100000 01126788999999887 88999999998887776 7899
Q ss_pred HHHHHHHhcccCcEEEEEEecCC-------cccHHHHHHHhcccccc
Q 028410 166 FVGEMERTVKIGGVCMVLMEECA-------GREIKQIVELFRTSSFT 205 (209)
Q Consensus 166 ~l~~~~r~LkpgG~lil~~~~~~-------~~~~~~~~~l~~~~~~~ 205 (209)
++++++|+|||||++++...... ......+.+.+..+||+
T Consensus 83 ~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGfi 129 (176)
T 2ld4_A 83 ILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGLV 129 (176)
T ss_dssp HHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTCE
T ss_pred HHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCCc
Confidence 99999999999999988644321 12367788889988883
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.1e-12 Score=101.54 Aligned_cols=87 Identities=13% Similarity=0.096 Sum_probs=68.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cC-CceEEEecCCCCCCc----------------EEEcCCCCC-CCC-----CCcee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IG-VADVTGVELMDSLPL----------------VSRADPHNL-PFF-----DEAFD 150 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~-~~~v~~vD~s~~~~~----------------~~~~d~~~~-~~~-----~~~fD 150 (209)
.++.+|||+|||+|..+..+++ .+ .++|+++|+++.+++ ++++|+.+. +.. +++||
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 4678999999999999999998 33 569999999998664 566666543 211 57899
Q ss_pred eEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 151 ~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
+|++... ..+...+++++.++|||||.+++.
T Consensus 139 ~V~~d~~--~~~~~~~l~~~~~~LkpGG~lv~d 169 (242)
T 3r3h_A 139 FIFIDAD--KTNYLNYYELALKLVTPKGLIAID 169 (242)
T ss_dssp EEEEESC--GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCC--hHHhHHHHHHHHHhcCCCeEEEEE
Confidence 9998643 225677899999999999998774
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=9.2e-12 Score=102.05 Aligned_cols=109 Identities=15% Similarity=0.148 Sum_probs=80.0
Q ss_pred ccCCCCCeEEEEcCCC------ChhHHHHHh-cC-CceEEEecCCCC--CCcE-EEcCCCCCCCCCCceeeEEcccchh-
Q 028410 92 SLLFNHSKVLCVSAGA------GHEVMAFNS-IG-VADVTGVELMDS--LPLV-SRADPHNLPFFDEAFDVAFTAHLAE- 159 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~------G~~~~~la~-~~-~~~v~~vD~s~~--~~~~-~~~d~~~~~~~~~~fD~i~~~~~~~- 159 (209)
..++++.+|||+|||+ |. ..+++ .+ .++|+|+|+++. .+.+ +++|+.+++++ ++||+|+++....
T Consensus 59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v~~v~~~i~gD~~~~~~~-~~fD~Vvsn~~~~~ 135 (290)
T 2xyq_A 59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVHTA-NKWDLIISDMYDPR 135 (290)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBCSSSEEEESCGGGCCCS-SCEEEEEECCCCCC
T ss_pred cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCCCCCEEEEECccccCCcc-CcccEEEEcCCccc
Confidence 3568899999999955 55 33444 44 469999999987 3458 99999988764 7899999952211
Q ss_pred -------h---h-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 160 -------A---L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 160 -------~---~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
+ . ....+++++.++|||||.+++.+.... ...++.++++..+|.
T Consensus 136 ~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~--~~~~l~~~l~~~GF~ 190 (290)
T 2xyq_A 136 TKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS--WNADLYKLMGHFSWW 190 (290)
T ss_dssp ---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS--CCHHHHHHHTTEEEE
T ss_pred cccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC--CHHHHHHHHHHcCCc
Confidence 1 1 135889999999999999988765543 335788888887763
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.29 E-value=6.7e-13 Score=99.45 Aligned_cols=92 Identities=23% Similarity=0.181 Sum_probs=70.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC--------------CcEEEcCCCCC-C-C--CCCceeeEEccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PLVSRADPHNL-P-F--FDEAFDVAFTAH 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~--------------~~~~~~d~~~~-~-~--~~~~fD~i~~~~ 156 (209)
.++.+|||+|||+|..+..+++.+. +++|+|+++.+ +.+.++|+.+. + . .+++||+|+++.
T Consensus 40 ~~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 40 PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred cCCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 3788999999999999999999866 59999999874 34667776652 2 1 134899999975
Q ss_pred chhhhCHHHHHHHHH--HhcccCcEEEEEEecCC
Q 028410 157 LAEALFPSRFVGEME--RTVKIGGVCMVLMEECA 188 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~--r~LkpgG~lil~~~~~~ 188 (209)
..+ .+..++++.+. ++|||||.+++.+....
T Consensus 119 ~~~-~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 119 PYA-MDLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp CTT-SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred CCc-hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 544 44556677776 99999999988877653
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.4e-12 Score=101.63 Aligned_cols=86 Identities=9% Similarity=0.163 Sum_probs=66.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cC-CceEEEecCCCCCC-----------------cEEEcCCCCC--CCCCCceeeEE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IG-VADVTGVELMDSLP-----------------LVSRADPHNL--PFFDEAFDVAF 153 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~-~~~v~~vD~s~~~~-----------------~~~~~d~~~~--~~~~~~fD~i~ 153 (209)
+++.+|||+|||+|..+..+++ .+ .++|+++|+++.++ .++.+|+.+. .+++++||+|+
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~ 134 (221)
T 3dr5_A 55 NGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVF 134 (221)
T ss_dssp TTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEE
T ss_pred CCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEE
Confidence 3455999999999999999998 43 57999999998733 3666666553 23468999999
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEE
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil 182 (209)
+.... .+...+++++.++|||||.+++
T Consensus 135 ~d~~~--~~~~~~l~~~~~~LkpGG~lv~ 161 (221)
T 3dr5_A 135 GQVSP--MDLKALVDAAWPLLRRGGALVL 161 (221)
T ss_dssp ECCCT--TTHHHHHHHHHHHEEEEEEEEE
T ss_pred EcCcH--HHHHHHHHHHHHHcCCCcEEEE
Confidence 85321 2567789999999999999766
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.29 E-value=9e-12 Score=103.97 Aligned_cols=102 Identities=19% Similarity=0.202 Sum_probs=74.8
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCC--------------------------CCcEEEcCCCCC--
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS--------------------------LPLVSRADPHNL-- 142 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~--------------------------~~~~~~~d~~~~-- 142 (209)
.+.++.+|||+|||+|..+..+++. | .++|+++|+++. .+.+..+|+.+.
T Consensus 102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~ 181 (336)
T 2b25_A 102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE 181 (336)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc
Confidence 5688999999999999999999984 4 369999999873 356788999886
Q ss_pred CCCCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhc
Q 028410 143 PFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (209)
Q Consensus 143 ~~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~ 200 (209)
++++++||+|+++.. ++..++.++.++|||||.+++.... ..+...+.+.++
T Consensus 182 ~~~~~~fD~V~~~~~----~~~~~l~~~~~~LkpgG~lv~~~~~--~~~~~~~~~~l~ 233 (336)
T 2b25_A 182 DIKSLTFDAVALDML----NPHVTLPVFYPHLKHGGVCAVYVVN--ITQVIELLDGIR 233 (336)
T ss_dssp ------EEEEEECSS----STTTTHHHHGGGEEEEEEEEEEESS--HHHHHHHHHHHH
T ss_pred ccCCCCeeEEEECCC----CHHHHHHHHHHhcCCCcEEEEEeCC--HHHHHHHHHHHH
Confidence 566788999998432 3455889999999999998766553 445555555444
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-12 Score=102.75 Aligned_cols=86 Identities=19% Similarity=0.262 Sum_probs=69.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC----------------CcEEEcCCCCC-C-CCCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNL-P-FFDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~----------------~~~~~~d~~~~-~-~~~~~fD~i~~~ 155 (209)
.++.+|||+|||+|..+..+++. +..+|+++|+++.+ +.++.+|+.+. + ..+++||+|++.
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 57889999999999999999983 35699999999863 45788888764 3 337899999975
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEE
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMV 182 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil 182 (209)
.. ..+...+++++.+.|||||++++
T Consensus 150 ~~--~~~~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 150 AA--KAQSKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp TT--SSSHHHHHHHHGGGEEEEEEEEE
T ss_pred Cc--HHHHHHHHHHHHHhcCCCeEEEE
Confidence 32 12578899999999999999766
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3e-12 Score=104.08 Aligned_cols=107 Identities=12% Similarity=0.067 Sum_probs=78.3
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC---------------cEEEcCCCCCCC----CCCceee
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP---------------LVSRADPHNLPF----FDEAFDV 151 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~----~~~~fD~ 151 (209)
...++.+|||+|||+|..+..+++. +.++|+++|+++.++ .++.+|+.+++. .+++||+
T Consensus 80 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~ 159 (274)
T 3ajd_A 80 NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDK 159 (274)
T ss_dssp CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCE
Confidence 3478899999999999999999983 447999999998743 366777766543 2678999
Q ss_pred EEccc------ch------------hhh-CHHHHHHHHHHhcccCcEEEEEEecCCccc-HHHHHHHh
Q 028410 152 AFTAH------LA------------EAL-FPSRFVGEMERTVKIGGVCMVLMEECAGRE-IKQIVELF 199 (209)
Q Consensus 152 i~~~~------~~------------~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~-~~~~~~l~ 199 (209)
|++.. +. ... ...+++.++.+.|||||.+++.+......+ ...+.+++
T Consensus 160 Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l 227 (274)
T 3ajd_A 160 ILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYIL 227 (274)
T ss_dssp EEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHH
T ss_pred EEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHH
Confidence 99851 11 111 458899999999999999998877654333 33344444
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.27 E-value=7.8e-12 Score=99.97 Aligned_cols=89 Identities=12% Similarity=0.048 Sum_probs=68.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc---CCceEEEecCCCCC----------------------------------------
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI---GVADVTGVELMDSL---------------------------------------- 131 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~---~~~~v~~vD~s~~~---------------------------------------- 131 (209)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 46789999999999999999875 33589999999763
Q ss_pred ----Cc-------------EEEcCCCCCCC-----CCCceeeEEcccchhhh----------CHHHHHHHHHHhcccCcE
Q 028410 132 ----PL-------------VSRADPHNLPF-----FDEAFDVAFTAHLAEAL----------FPSRFVGEMERTVKIGGV 179 (209)
Q Consensus 132 ----~~-------------~~~~d~~~~~~-----~~~~fD~i~~~~~~~~~----------~~~~~l~~~~r~LkpgG~ 179 (209)
+. +.++|+.+... ..++||+|+++...... ....+++++.++|||||+
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 209 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 209 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence 33 77788877321 34589999997433322 246899999999999999
Q ss_pred EEEE
Q 028410 180 CMVL 183 (209)
Q Consensus 180 lil~ 183 (209)
++++
T Consensus 210 l~~~ 213 (250)
T 1o9g_A 210 IAVT 213 (250)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9884
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.27 E-value=3.5e-12 Score=100.17 Aligned_cols=103 Identities=14% Similarity=0.160 Sum_probs=73.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCC----------------CcEEEcCCCC-CCC-C----CCcee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL----------------PLVSRADPHN-LPF-F----DEAFD 150 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~----------------~~~~~~d~~~-~~~-~----~~~fD 150 (209)
.++.+|||+|||+|..+..+++. +.++|+++|+++.+ +.++++|+.+ ++. + .++||
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 46789999999999999999983 24699999999874 3477888754 332 2 27899
Q ss_pred eEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhc
Q 028410 151 VAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (209)
Q Consensus 151 ~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~ 200 (209)
+|++....++. +..+++.++ ++|||||.+++.... ....+.+.+.++
T Consensus 137 ~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~--~~~~~~~~~~l~ 184 (221)
T 3u81_A 137 MVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVI--VPGTPDFLAYVR 184 (221)
T ss_dssp EEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCC--CCCCHHHHHHHH
T ss_pred EEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCC--CcchHHHHHHHh
Confidence 99997654444 556777777 999999997654332 223345555444
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.8e-12 Score=100.29 Aligned_cols=89 Identities=22% Similarity=0.257 Sum_probs=70.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC---------------CcEEEcCCCCCCCCCC-ceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL---------------PLVSRADPHNLPFFDE-AFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~-~fD~i~~~ 155 (209)
...++.+|||+|||+|..+..+++. + .+|+++|+++.+ +.+..+|. ..+++++ .||+|++.
T Consensus 88 ~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~ 165 (235)
T 1jg1_A 88 NLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPYDVIIVT 165 (235)
T ss_dssp TCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEEC
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCccEEEEC
Confidence 4578899999999999999999985 5 699999999763 34677776 3444444 59999998
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEEecCC
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEECA 188 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~ 188 (209)
...+++. .++.+.|||||.+++.+....
T Consensus 166 ~~~~~~~-----~~~~~~L~pgG~lvi~~~~~~ 193 (235)
T 1jg1_A 166 AGAPKIP-----EPLIEQLKIGGKLIIPVGSYH 193 (235)
T ss_dssp SBBSSCC-----HHHHHTEEEEEEEEEEECSSS
T ss_pred CcHHHHH-----HHHHHhcCCCcEEEEEEecCC
Confidence 7666553 378999999999999887643
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.3e-12 Score=100.03 Aligned_cols=107 Identities=8% Similarity=0.017 Sum_probs=83.9
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcC-CceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIG-VADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~-~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
...++.+|+|+|||+|..+..+++.+ ..+|+++|+++.++ .+..+|..+...++++||+|+..
T Consensus 18 ~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~Ivia 97 (230)
T 3lec_A 18 YVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITIC 97 (230)
T ss_dssp TSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred hCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEe
Confidence 44788999999999999999999964 56899999999844 47888887766555589998876
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
++...+ ..+++.+..+.|+++|++++.-. .....+.+.+...||
T Consensus 98 GmGg~l-I~~IL~~~~~~l~~~~~lIlqp~----~~~~~lr~~L~~~Gf 141 (230)
T 3lec_A 98 GMGGRL-IADILNNDIDKLQHVKTLVLQPN----NREDDLRKWLAANDF 141 (230)
T ss_dssp EECHHH-HHHHHHHTGGGGTTCCEEEEEES----SCHHHHHHHHHHTTE
T ss_pred CCchHH-HHHHHHHHHHHhCcCCEEEEECC----CChHHHHHHHHHCCC
Confidence 554422 46778888899999999776653 347778888887777
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=103.73 Aligned_cols=87 Identities=8% Similarity=0.037 Sum_probs=72.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCC---------CCcEEEcCCCCCCCCCCceeeEEcccchhhh-CH
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDS---------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL-FP 163 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~---------~~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~ 163 (209)
.+..+|||+|||+|..+..+++ .+..+++++|++ . .+.++.+|+.+ +++ +||+|++.++.++. ++
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d~ 267 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQP-QVVGNLTGNENLNFVGGDMFK-SIP--SADAVLLKWVLHDWNDE 267 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECH-HHHSSCCCCSSEEEEECCTTT-CCC--CCSEEEEESCGGGSCHH
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccH-HHHhhcccCCCcEEEeCccCC-CCC--CceEEEEcccccCCCHH
Confidence 5678999999999999999998 455689999983 3 24578899887 665 49999999998888 65
Q ss_pred H--HHHHHHHHhccc---CcEEEEEEe
Q 028410 164 S--RFVGEMERTVKI---GGVCMVLME 185 (209)
Q Consensus 164 ~--~~l~~~~r~Lkp---gG~lil~~~ 185 (209)
. ++++++.++||| ||++++...
T Consensus 268 ~~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 268 QSLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp HHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 5 999999999999 999888753
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.27 E-value=5.1e-12 Score=104.83 Aligned_cols=112 Identities=10% Similarity=0.030 Sum_probs=82.4
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
...++.+|||+|||+|..+..+++. +.++|+++|+++.++ .++++|+.+++..+++||+|+++
T Consensus 115 ~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d 194 (315)
T 1ixk_A 115 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLD 194 (315)
T ss_dssp CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEe
Confidence 4578899999999999999999983 346999999998743 46778887776556789999984
Q ss_pred c------chhhh-----------------CHHHHHHHHHHhcccCcEEEEEEecCCccc-HHHHHHHhccccc
Q 028410 156 H------LAEAL-----------------FPSRFVGEMERTVKIGGVCMVLMEECAGRE-IKQIVELFRTSSF 204 (209)
Q Consensus 156 ~------~~~~~-----------------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~-~~~~~~l~~~~~~ 204 (209)
. +.... ....++.++.++|||||++++.+......+ ...+.+++++.+|
T Consensus 195 ~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~ 267 (315)
T 1ixk_A 195 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDV 267 (315)
T ss_dssp CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSE
T ss_pred CCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCC
Confidence 1 11110 115889999999999999998876654333 3344556666665
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.3e-12 Score=100.69 Aligned_cols=87 Identities=11% Similarity=0.043 Sum_probs=68.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCC----------------CcEEEcCCCC-CCCC--CCceeeEE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL----------------PLVSRADPHN-LPFF--DEAFDVAF 153 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~----------------~~~~~~d~~~-~~~~--~~~fD~i~ 153 (209)
.++.+|||+|||+|..+..+++. + .++|+++|+++.+ +.++++|+.+ ++.. .++||+|+
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 57889999999999999999984 3 5799999999863 3477888765 3322 35899999
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
+... ..+...+++++.++|||||++++.
T Consensus 142 ~d~~--~~~~~~~l~~~~~~LkpGG~lv~~ 169 (248)
T 3tfw_A 142 IDAD--KPNNPHYLRWALRYSRPGTLIIGD 169 (248)
T ss_dssp ECSC--GGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred ECCc--hHHHHHHHHHHHHhcCCCeEEEEe
Confidence 8542 125678999999999999987665
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.6e-12 Score=105.53 Aligned_cols=107 Identities=18% Similarity=0.238 Sum_probs=78.5
Q ss_pred CCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC---------------cEEEcCCCCC--CCCCCceeeEEcccc-
Q 028410 97 HSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP---------------LVSRADPHNL--PFFDEAFDVAFTAHL- 157 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~---------------~~~~~d~~~~--~~~~~~fD~i~~~~~- 157 (209)
..+|||+|||+|..+.++++ .+..+++++|+++.++ .++.+|+.+. .+++++||+|++...
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 34999999999999999998 5555999999998744 3667776553 345689999998532
Q ss_pred ----hhhhCHHHHHHHHHHhcccCcEEEEEEecCCcc-----cHHHHHHHhcccc
Q 028410 158 ----AEALFPSRFVGEMERTVKIGGVCMVLMEECAGR-----EIKQIVELFRTSS 203 (209)
Q Consensus 158 ----~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~-----~~~~~~~l~~~~~ 203 (209)
..++...+++++++++|||||++++........ ....+.+.|....
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~~v~ 224 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFEHVA 224 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCSEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCCceE
Confidence 223345889999999999999998887654321 2344555665543
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-11 Score=96.66 Aligned_cols=89 Identities=19% Similarity=0.262 Sum_probs=71.6
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCC--------------------CcEEEcCCCCCCCCCCceee
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL--------------------PLVSRADPHNLPFFDEAFDV 151 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~--------------------~~~~~~d~~~~~~~~~~fD~ 151 (209)
..++.+|||+|||+|..+..+++. + .++|+++|+++.+ +.+..+|+...+.++++||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 578899999999999999999984 3 3599999998763 34677887766556788999
Q ss_pred EEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 152 i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
|++....+++ +.++.+.|||||.+++.+...
T Consensus 155 i~~~~~~~~~-----~~~~~~~LkpgG~lv~~~~~~ 185 (226)
T 1i1n_A 155 IHVGAAAPVV-----PQALIDQLKPGGRLILPVGPA 185 (226)
T ss_dssp EEECSBBSSC-----CHHHHHTEEEEEEEEEEESCT
T ss_pred EEECCchHHH-----HHHHHHhcCCCcEEEEEEecC
Confidence 9987655433 468899999999999988654
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-11 Score=104.35 Aligned_cols=96 Identities=20% Similarity=0.123 Sum_probs=77.6
Q ss_pred cccCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCC---------------CcEEEcCCCCCCCCCCceeeEE
Q 028410 91 KSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAF 153 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~i~ 153 (209)
....+++.+|||+|||+|.++..++.. +..+++|+|+++.+ +.+.++|+.+++.+.+.||+|+
T Consensus 198 ~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii 277 (354)
T 3tma_A 198 LADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRIL 277 (354)
T ss_dssp HTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEE
T ss_pred HhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEE
Confidence 345678899999999999999999984 34699999999863 4588999999888788899999
Q ss_pred cccchh-------hh--CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 154 TAHLAE-------AL--FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 154 ~~~~~~-------~~--~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
++.-.. .. ....+++++.++|||||.+++.+..
T Consensus 278 ~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~ 319 (354)
T 3tma_A 278 ANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR 319 (354)
T ss_dssp ECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred ECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 962211 11 2378899999999999999888764
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.24 E-value=6e-12 Score=102.28 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=75.0
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC---------------CcEEEcCCCCCCCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
.+.++.+|||+|||+|.++..+++. +..+|+|+|+++.+ +.++.+|+.+.+. +++||+|+++.
T Consensus 116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~ 194 (272)
T 3a27_A 116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGY 194 (272)
T ss_dssp SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECC
T ss_pred hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECC
Confidence 3578899999999999999999985 45699999999763 3478899888743 67899999864
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
.. +..+++.++.+.|||||.+++.....
T Consensus 195 p~---~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 195 VH---KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp CS---SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred cc---cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 43 46778999999999999998877654
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-12 Score=106.34 Aligned_cols=105 Identities=15% Similarity=0.112 Sum_probs=77.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-----------------CcEEEcCCCCCCC----CCCceeeEE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-----------------PLVSRADPHNLPF----FDEAFDVAF 153 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~-----------------~~~~~~d~~~~~~----~~~~fD~i~ 153 (209)
.++.+|||+|||+|.++..++..+. +|+++|+|+.+ +.++++|+.+... .+++||+|+
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 5678999999999999999999876 99999999874 3466677655321 156899999
Q ss_pred ccc----------chhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhc
Q 028410 154 TAH----------LAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (209)
Q Consensus 154 ~~~----------~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~ 200 (209)
++. +.... +..+++.++.++|||||.+++............+.+++.
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~ 288 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMR 288 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHH
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHH
Confidence 942 12223 567899999999999999777766654444444444433
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.23 E-value=5e-12 Score=99.93 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=70.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC----------------CcEEEcCCCCC-CCC--CCceeeEEc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNL-PFF--DEAFDVAFT 154 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~----------------~~~~~~d~~~~-~~~--~~~fD~i~~ 154 (209)
.++.+|||+|||+|..+..+++. +..+|+++|+++.+ +.+..+|+.+. +.. +++||+|++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 57789999999999999999984 44699999999763 44677777663 332 578999998
Q ss_pred ccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 155 AHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
..... +...+++++.+.|||||.+++.
T Consensus 133 ~~~~~--~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 133 DAAKG--QYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp EGGGS--CHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCHH--HHHHHHHHHHHHcCCCeEEEEE
Confidence 65432 6789999999999999998775
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.23 E-value=9.4e-12 Score=99.41 Aligned_cols=107 Identities=9% Similarity=-0.021 Sum_probs=82.3
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcC-CceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIG-VADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~-~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
...++.+|||+|||+|..+..+++.+ ..+|+++|+++.++ .+..+|..+...++++||+|+..
T Consensus 18 ~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Ivia 97 (244)
T 3gnl_A 18 YITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIA 97 (244)
T ss_dssp TCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred hCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEe
Confidence 44788999999999999999999964 46899999999843 47788877755444469999876
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
++...+ ...++.+..+.|+++|++++.-. .....+.+.+...||
T Consensus 98 gmGg~l-I~~IL~~~~~~L~~~~~lIlq~~----~~~~~lr~~L~~~Gf 141 (244)
T 3gnl_A 98 GMGGTL-IRTILEEGAAKLAGVTKLILQPN----IAAWQLREWSEQNNW 141 (244)
T ss_dssp EECHHH-HHHHHHHTGGGGTTCCEEEEEES----SCHHHHHHHHHHHTE
T ss_pred CCchHH-HHHHHHHHHHHhCCCCEEEEEcC----CChHHHHHHHHHCCC
Confidence 554422 46678888999999999777653 256777777777776
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.5e-11 Score=102.88 Aligned_cols=108 Identities=15% Similarity=0.140 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCC-ceEEEecCCCCC---------------CcEEEcCCCC-CCC-CCCceeeEEccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGV-ADVTGVELMDSL---------------PLVSRADPHN-LPF-FDEAFDVAFTAH 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~-~~v~~vD~s~~~---------------~~~~~~d~~~-~~~-~~~~fD~i~~~~ 156 (209)
.++.+|||+| |+|.++..++..+. .+|+++|+++.+ +.++++|+.+ +|. .+++||+|+++.
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 4678999999 99999999988643 699999999874 4478999988 664 457899999975
Q ss_pred chhhhCHHHHHHHHHHhcccCcEE-EEEEecCCcccH---HHHHHHhc-cccc
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVC-MVLMEECAGREI---KQIVELFR-TSSF 204 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~l-il~~~~~~~~~~---~~~~~l~~-~~~~ 204 (209)
.........++.++.++|||||++ ++.+... ..+. ..+.+.+. ..++
T Consensus 250 p~~~~~~~~~l~~~~~~LkpgG~~~~~~~~~~-~~~~~~~~~~~~~l~~~~g~ 301 (373)
T 2qm3_A 250 PETLEAIRAFVGRGIATLKGPRCAGYFGITRR-ESSLDKWREIQKLLLNEFNV 301 (373)
T ss_dssp CSSHHHHHHHHHHHHHTBCSTTCEEEEEECTT-TCCHHHHHHHHHHHHHTSCC
T ss_pred CCchHHHHHHHHHHHHHcccCCeEEEEEEecC-cCCHHHHHHHHHHHHHhcCc
Confidence 433223588999999999999954 5555431 1223 55666665 5544
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.1e-12 Score=98.93 Aligned_cols=86 Identities=13% Similarity=0.131 Sum_probs=68.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCCC----------------cEEEcCCCCC-CCCCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSLP----------------LVSRADPHNL-PFFDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~~----------------~~~~~d~~~~-~~~~~~fD~i~~~ 155 (209)
.++.+|||+|||+|..+..+++. + .++|+++|+++.++ .++.+|+.+. +..++ ||+|++.
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 46789999999999999999984 3 46999999998743 4677887653 44456 9999985
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
.. ..+...+++++.++|||||.+++.
T Consensus 134 ~~--~~~~~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 134 CD--VFNGADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp TT--TSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred CC--hhhhHHHHHHHHHhcCCCeEEEEE
Confidence 31 236789999999999999998763
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-11 Score=96.08 Aligned_cols=89 Identities=19% Similarity=0.261 Sum_probs=70.9
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-cCC------ceEEEecCCCCC--------------------CcEEEcCCCCCCCC
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-IGV------ADVTGVELMDSL--------------------PLVSRADPHNLPFF 145 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~~~------~~v~~vD~s~~~--------------------~~~~~~d~~~~~~~ 145 (209)
.++++.+|||+|||+|..+..+++ .+. ++|+++|+++.+ +.+..+|..+ +++
T Consensus 81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~ 159 (227)
T 1r18_A 81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYP 159 (227)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCG
T ss_pred hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCC
Confidence 357889999999999999999988 342 599999999763 3467788776 444
Q ss_pred C-CceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 146 D-EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 146 ~-~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
+ ++||+|++....+++ ..++.+.|||||++++.+...
T Consensus 160 ~~~~fD~I~~~~~~~~~-----~~~~~~~LkpgG~lvi~~~~~ 197 (227)
T 1r18_A 160 PNAPYNAIHVGAAAPDT-----PTELINQLASGGRLIVPVGPD 197 (227)
T ss_dssp GGCSEEEEEECSCBSSC-----CHHHHHTEEEEEEEEEEESCS
T ss_pred cCCCccEEEECCchHHH-----HHHHHHHhcCCCEEEEEEecC
Confidence 4 789999997665544 378999999999999988753
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-11 Score=98.65 Aligned_cols=108 Identities=9% Similarity=0.075 Sum_probs=77.4
Q ss_pred CCCeEEEEcCCC--ChhHHHHHh--cCCceEEEecCCCCCC---------------cEEEcCCCCCC------CCCCcee
Q 028410 96 NHSKVLCVSAGA--GHEVMAFNS--IGVADVTGVELMDSLP---------------LVSRADPHNLP------FFDEAFD 150 (209)
Q Consensus 96 ~~~~iLDiGcG~--G~~~~~la~--~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~------~~~~~fD 150 (209)
....|||+|||+ +..+..+++ .+..+|+++|.|+.|+ .++++|+.+++ ...+.||
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 347899999997 444455554 3557999999999755 37899998852 1134565
Q ss_pred -----eEEcccchhhh-C---HHHHHHHHHHhcccCcEEEEEEecCCc--ccHHHHHHHhcccc
Q 028410 151 -----VAFTAHLAEAL-F---PSRFVGEMERTVKIGGVCMVLMEECAG--REIKQIVELFRTSS 203 (209)
Q Consensus 151 -----~i~~~~~~~~~-~---~~~~l~~~~r~LkpgG~lil~~~~~~~--~~~~~~~~l~~~~~ 203 (209)
.|+++.++|++ + +..+++++.+.|+|||++++.....+. .....+.+.+++.+
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~~g 221 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAARN 221 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHHTT
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHhcC
Confidence 57788888888 4 578999999999999999998766542 23445555555444
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-11 Score=97.25 Aligned_cols=106 Identities=11% Similarity=0.065 Sum_probs=81.0
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcC-CceEEEecCCCCCC----------------cEEEcCCCC-CCCCCCceeeEEc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIG-VADVTGVELMDSLP----------------LVSRADPHN-LPFFDEAFDVAFT 154 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~-~~~v~~vD~s~~~~----------------~~~~~d~~~-~~~~~~~fD~i~~ 154 (209)
...++.+|||+|||+|..+..++..+ ..+|+++|+++.++ .+..+|..+ ++. .++||+|+.
T Consensus 12 ~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-~~~~D~Ivi 90 (225)
T 3kr9_A 12 FVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-TDQVSVITI 90 (225)
T ss_dssp TSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEEE
T ss_pred hCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-CcCCCEEEE
Confidence 34788999999999999999999964 56899999999844 367777743 332 236999987
Q ss_pred ccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
..+...+ ...++.+..+.|+|+|++++.-. .....+.+.+...||
T Consensus 91 aG~Gg~~-i~~Il~~~~~~L~~~~~lVlq~~----~~~~~vr~~L~~~Gf 135 (225)
T 3kr9_A 91 AGMGGRL-IARILEEGLGKLANVERLILQPN----NREDDLRIWLQDHGF 135 (225)
T ss_dssp EEECHHH-HHHHHHHTGGGCTTCCEEEEEES----SCHHHHHHHHHHTTE
T ss_pred cCCChHH-HHHHHHHHHHHhCCCCEEEEECC----CCHHHHHHHHHHCCC
Confidence 6554322 57788999999999999777443 367778888888777
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.21 E-value=4e-11 Score=94.19 Aligned_cols=89 Identities=18% Similarity=0.153 Sum_probs=71.8
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-----CceEEEecCCCCC--------------------CcEEEcCCCCCC---
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-----VADVTGVELMDSL--------------------PLVSRADPHNLP--- 143 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-----~~~v~~vD~s~~~--------------------~~~~~~d~~~~~--- 143 (209)
.++++.+|||+|||+|..+..+++. + ..+|+++|+++.+ +.+..+|+.+..
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 3578899999999999999999984 2 3599999998752 457788887754
Q ss_pred -CCCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 144 -FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 144 -~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
..+++||+|++....+++ +.++.+.|||||++++.+..
T Consensus 157 ~~~~~~fD~I~~~~~~~~~-----~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 157 KKELGLFDAIHVGASASEL-----PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHHCCEEEEEECSBBSSC-----CHHHHHHEEEEEEEEEEEEE
T ss_pred CccCCCcCEEEECCchHHH-----HHHHHHhcCCCcEEEEEEcc
Confidence 556889999997655543 47889999999999999875
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=9.6e-12 Score=101.75 Aligned_cols=103 Identities=13% Similarity=0.177 Sum_probs=76.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCce---eeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAF---DVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~f---D~i~~~ 155 (209)
.++.+|||+|||+|..+..++..+..+|+|+|+|+.+ +.++++|+.+. ++ ++| |+|+++
T Consensus 122 ~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~~-~~f~~~D~Ivsn 199 (284)
T 1nv8_A 122 YGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-FK-EKFASIEMILSN 199 (284)
T ss_dssp HTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-GG-GGTTTCCEEEEC
T ss_pred cCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-cc-cccCCCCEEEEc
Confidence 3667999999999999999988744699999999873 45788888763 22 578 999997
Q ss_pred --cchh---------hh---------CHHHHHHHHH-HhcccCcEEEEEEecCCcccHHHHHHHhccc
Q 028410 156 --HLAE---------AL---------FPSRFVGEME-RTVKIGGVCMVLMEECAGREIKQIVELFRTS 202 (209)
Q Consensus 156 --~~~~---------~~---------~~~~~l~~~~-r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~ 202 (209)
++.. +- +...+++++. +.|||||.+++.+. ..+...+.++|...
T Consensus 200 PPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~---~~q~~~v~~~~~~~ 264 (284)
T 1nv8_A 200 PPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG---EDQVEELKKIVSDT 264 (284)
T ss_dssp CCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC---TTCHHHHTTTSTTC
T ss_pred CCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC---chHHHHHHHHHHhC
Confidence 1100 00 1237899999 99999999887544 45667777777653
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-11 Score=97.37 Aligned_cols=87 Identities=10% Similarity=0.119 Sum_probs=67.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCC----------------CcEEEcCCCCC-C-CCC----Ccee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL----------------PLVSRADPHNL-P-FFD----EAFD 150 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~----------------~~~~~~d~~~~-~-~~~----~~fD 150 (209)
.++.+|||+|||+|..+..+++. + .++|+++|+++.+ +.++++|+.+. + +.. ++||
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 56789999999999999999984 3 5799999999863 34677777542 2 111 7899
Q ss_pred eEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 151 ~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
+|++... ..+...+++++.++|||||++++.
T Consensus 143 ~v~~~~~--~~~~~~~l~~~~~~L~pgG~lv~~ 173 (225)
T 3tr6_A 143 LIYIDAD--KANTDLYYEESLKLLREGGLIAVD 173 (225)
T ss_dssp EEEECSC--GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCC--HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 9997542 125788999999999999998764
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.19 E-value=8.8e-11 Score=101.28 Aligned_cols=109 Identities=16% Similarity=0.139 Sum_probs=80.6
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC--------------cEEEcCCCCCC--CCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP--------------LVSRADPHNLP--FFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~--------------~~~~~d~~~~~--~~~~~fD~i~~~ 155 (209)
...++.+|||+|||+|..+..+++. +.++|+++|+++.++ .+..+|+.+.+ +++++||.|+++
T Consensus 243 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D 322 (429)
T 1sqg_A 243 APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLD 322 (429)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred CCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEe
Confidence 3478899999999999999999984 337999999999854 47788888876 566899999963
Q ss_pred ------cchhhh-C----------------HHHHHHHHHHhcccCcEEEEEEecCCcc-cHHHHHHHhcc
Q 028410 156 ------HLAEAL-F----------------PSRFVGEMERTVKIGGVCMVLMEECAGR-EIKQIVELFRT 201 (209)
Q Consensus 156 ------~~~~~~-~----------------~~~~l~~~~r~LkpgG~lil~~~~~~~~-~~~~~~~l~~~ 201 (209)
.+..+. + ...++.++.+.|||||++++++...... ....+.+++.+
T Consensus 323 ~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~ 392 (429)
T 1sqg_A 323 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQR 392 (429)
T ss_dssp CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred CCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHh
Confidence 121111 1 1478999999999999999887665333 33344455543
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-11 Score=101.29 Aligned_cols=92 Identities=21% Similarity=0.212 Sum_probs=68.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC-------------------cEEEcCCCC-CCCCCCceeeEE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP-------------------LVSRADPHN-LPFFDEAFDVAF 153 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~-------------------~~~~~d~~~-~~~~~~~fD~i~ 153 (209)
.++.+|||+|||+|..+..+++. +..+|+++|+++.++ .++.+|+.+ ++..+++||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 45689999999999999999986 667999999997633 355666544 333467899999
Q ss_pred cccchhhh------CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 154 TAHLAEAL------FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 154 ~~~~~~~~------~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
++...... ...++++++.++|||||.+++....
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 207 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence 85322101 2378999999999999998887544
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-11 Score=97.29 Aligned_cols=87 Identities=13% Similarity=0.015 Sum_probs=67.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCC----------------CcEEEcCCCCC-C-CC---CCceee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL----------------PLVSRADPHNL-P-FF---DEAFDV 151 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~----------------~~~~~~d~~~~-~-~~---~~~fD~ 151 (209)
.++.+|||+|||+|..+..+++. + .++|+++|+++.+ +.++++|+.+. + ++ .++||+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 56889999999999999999984 3 4699999999863 34677776542 1 11 267999
Q ss_pred EEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 152 i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
|++.... .....++.++.++|||||.+++.
T Consensus 137 v~~d~~~--~~~~~~l~~~~~~L~pgG~lv~~ 166 (223)
T 3duw_A 137 IFIDADK--QNNPAYFEWALKLSRPGTVIIGD 166 (223)
T ss_dssp EEECSCG--GGHHHHHHHHHHTCCTTCEEEEE
T ss_pred EEEcCCc--HHHHHHHHHHHHhcCCCcEEEEe
Confidence 9985432 24678999999999999986654
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-11 Score=100.12 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=70.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC-------------------cEEEcCCCC-CCCCCCceeeEE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP-------------------LVSRADPHN-LPFFDEAFDVAF 153 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~-------------------~~~~~d~~~-~~~~~~~fD~i~ 153 (209)
.++.+|||+|||+|..+..+++. +..+|+++|+++.++ +++.+|+.+ ++..+++||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 46789999999999999999986 667999999997643 355666554 233467899999
Q ss_pred cccchh-----hhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 154 TAHLAE-----ALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 154 ~~~~~~-----~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+..... ++...++++++.++|||||.+++....
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 953321 112378999999999999998777544
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.6e-11 Score=97.17 Aligned_cols=87 Identities=11% Similarity=0.077 Sum_probs=68.6
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCCC----------------cEEEcCCCCC-C-C-----CCCce
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSLP----------------LVSRADPHNL-P-F-----FDEAF 149 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~~----------------~~~~~d~~~~-~-~-----~~~~f 149 (209)
.++.+|||+|||+|..+..+++. + .++|+++|+++.++ .++.+|+.+. + + ++++|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 56789999999999999999983 3 46999999998743 3677777552 2 2 26789
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
|+|++... ..+...+++++.++|||||.+++.
T Consensus 158 D~V~~d~~--~~~~~~~l~~~~~~LkpGG~lv~d 189 (247)
T 1sui_A 158 DFIFVDAD--KDNYLNYHKRLIDLVKVGGVIGYD 189 (247)
T ss_dssp SEEEECSC--STTHHHHHHHHHHHBCTTCCEEEE
T ss_pred EEEEEcCc--hHHHHHHHHHHHHhCCCCeEEEEe
Confidence 99998542 125788999999999999998764
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-10 Score=89.16 Aligned_cols=101 Identities=12% Similarity=0.083 Sum_probs=73.3
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------CcEEEcCCCCCCCCCCceeeEEcccchhhhC-
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------PLVSRADPHNLPFFDEAFDVAFTAHLAEALF- 162 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~- 162 (209)
..++.+|||+|||+|..+..+++.+..+|+|+|+++.+ +.++++|+.+++ ++||+|+++...++..
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC-----
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccC
Confidence 35788999999999999999998876689999999874 568889988864 6899999986665552
Q ss_pred --HHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccc
Q 028410 163 --PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSS 203 (209)
Q Consensus 163 --~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~ 203 (209)
..++++++.+.+ |+ ++++... .....+.+.+...+
T Consensus 126 ~~~~~~l~~~~~~~--g~-~~~~~~~---~~~~~~~~~~~~~g 162 (200)
T 1ne2_A 126 HSDRAFIDKAFETS--MW-IYSIGNA---KARDFLRREFSARG 162 (200)
T ss_dssp --CHHHHHHHHHHE--EE-EEEEEEG---GGHHHHHHHHHHHE
T ss_pred chhHHHHHHHHHhc--Cc-EEEEEcC---chHHHHHHHHHHCC
Confidence 257888898888 44 4444432 23455566555443
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-11 Score=98.07 Aligned_cols=60 Identities=12% Similarity=0.077 Sum_probs=48.3
Q ss_pred CCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC----------------CcEEEcCCCCC---CCC---CCceeeE
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNL---PFF---DEAFDVA 152 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~----------------~~~~~~d~~~~---~~~---~~~fD~i 152 (209)
++.+|||+|||+|..+..++.. +..+|+|+|+|+.+ +.++++|+.+. +++ +++||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 6789999999999999998874 33599999999863 45788887762 454 3689999
Q ss_pred Ecc
Q 028410 153 FTA 155 (209)
Q Consensus 153 ~~~ 155 (209)
+++
T Consensus 145 ~~n 147 (254)
T 2h00_A 145 MCN 147 (254)
T ss_dssp EEC
T ss_pred EEC
Confidence 997
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.16 E-value=8.8e-11 Score=101.90 Aligned_cols=110 Identities=14% Similarity=0.057 Sum_probs=80.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCC---------------CcEEEcCCCCCC--CCCCceeeEE
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL---------------PLVSRADPHNLP--FFDEAFDVAF 153 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~---------------~~~~~~d~~~~~--~~~~~fD~i~ 153 (209)
...++.+|||+|||+|..+..+++. + .++|+++|+++.+ +.+..+|+.+++ +++++||+|+
T Consensus 256 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl 335 (450)
T 2yxl_A 256 DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVL 335 (450)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEE
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEE
Confidence 3578899999999999999999983 3 3699999999873 347788888876 5558899999
Q ss_pred cc------cchhhh-C----------------HHHHHHHHHHhcccCcEEEEEEecCCcccH-HHHHHHhccc
Q 028410 154 TA------HLAEAL-F----------------PSRFVGEMERTVKIGGVCMVLMEECAGREI-KQIVELFRTS 202 (209)
Q Consensus 154 ~~------~~~~~~-~----------------~~~~l~~~~r~LkpgG~lil~~~~~~~~~~-~~~~~l~~~~ 202 (209)
+. .+.... + ...++.++.+.|||||.+++++......+. ..+.+++.+.
T Consensus 336 ~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~ 408 (450)
T 2yxl_A 336 LDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVH 408 (450)
T ss_dssp EECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHC
T ss_pred EcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 63 121111 1 157899999999999999988876644333 3444555543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.14 E-value=5.9e-11 Score=96.02 Aligned_cols=85 Identities=12% Similarity=0.031 Sum_probs=66.6
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-------------------EEEcCCCCCCCCCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-------------------VSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-------------------~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.++.+|||+|||+|..+..+++.+ .+|+++|+++.+++ ++.+|..+.. ++||+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence 456899999999999999998877 89999999977444 3344444332 789999985
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
. .+|..+++++.+.|||||.+++.....
T Consensus 147 ~----~dp~~~~~~~~~~L~pgG~lv~~~~~~ 174 (262)
T 2cmg_A 147 Q----EPDIHRIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_dssp S----CCCHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred C----CChHHHHHHHHHhcCCCcEEEEEcCCc
Confidence 2 256679999999999999988865543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-10 Score=95.17 Aligned_cols=107 Identities=14% Similarity=0.126 Sum_probs=79.5
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcccc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
.+++.+|||+|||+|.++..++..|..+|+++|+|+.++ .++.+|..+++ +.+.||.|+++..
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-cccCCCEEEECCC
Confidence 388999999999999999999998767999999999844 37788988876 3678999998643
Q ss_pred hhhhCHHHHHHHHHHhcccCcEEEEEEecC----CcccHHHHHHHhccccc
Q 028410 158 AEALFPSRFVGEMERTVKIGGVCMVLMEEC----AGREIKQIVELFRTSSF 204 (209)
Q Consensus 158 ~~~~~~~~~l~~~~r~LkpgG~lil~~~~~----~~~~~~~~~~l~~~~~~ 204 (209)
.. ...++..+.+.|||||.+.+..... .......+.++.+..++
T Consensus 202 ~~---~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~ 249 (278)
T 3k6r_A 202 VR---THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGY 249 (278)
T ss_dssp SS---GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTC
T ss_pred Cc---HHHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCC
Confidence 32 3456778889999999976654322 22334455555554443
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=4e-10 Score=94.74 Aligned_cols=92 Identities=17% Similarity=0.091 Sum_probs=74.1
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCC--------------CCCcEEEcCCCCCCCCCCceeeEEcccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMD--------------SLPLVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~--------------~~~~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
.+.+..+|+|||||+|..+..+++ .+..+++..|..+ ..++++.+|+.+.+.+ .+|++++.++
T Consensus 176 ~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~v 253 (353)
T 4a6d_A 176 DLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILARV 253 (353)
T ss_dssp CGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEESS
T ss_pred CcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeeee
Confidence 456778999999999999999998 5666888888622 1356889999876654 4799999999
Q ss_pred hhhh-CH--HHHHHHHHHhcccCcEEEEEEec
Q 028410 158 AEAL-FP--SRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 158 ~~~~-~~--~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.|.. |. .++|+++++.|+|||+++++...
T Consensus 254 lh~~~d~~~~~iL~~~~~al~pgg~lli~e~~ 285 (353)
T 4a6d_A 254 LHDWADGKCSHLLERIYHTCKPGGGILVIESL 285 (353)
T ss_dssp GGGSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred cccCCHHHHHHHHHHHHhhCCCCCEEEEEEee
Confidence 8877 33 57899999999999999888643
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.13 E-value=8.5e-11 Score=102.70 Aligned_cols=107 Identities=14% Similarity=0.111 Sum_probs=78.1
Q ss_pred CCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC---------------cEEEcCCCCCCC-CCCceeeEEcc--
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP---------------LVSRADPHNLPF-FDEAFDVAFTA-- 155 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~-~~~~fD~i~~~-- 155 (209)
++.+|||+|||+|..+..+++. +.+.|+++|+++.++ .++++|+.+++. .+++||.|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 8899999999999999999984 347999999998743 367788887653 46789999973
Q ss_pred ----cchhhh-----------------CHHHHHHHHHHhcccCcEEEEEEecCCcccHH-HHHHHhccc
Q 028410 156 ----HLAEAL-----------------FPSRFVGEMERTVKIGGVCMVLMEECAGREIK-QIVELFRTS 202 (209)
Q Consensus 156 ----~~~~~~-----------------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~-~~~~l~~~~ 202 (209)
.+.... ...+++.++.++|||||++++++......+.. .+..++++.
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~ 265 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETY 265 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHS
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHC
Confidence 111110 12578999999999999999888765443333 334444443
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=8.8e-11 Score=97.33 Aligned_cols=92 Identities=20% Similarity=0.235 Sum_probs=70.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC--------------------cEEEcCCCC-CCCCCCceeeE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP--------------------LVSRADPHN-LPFFDEAFDVA 152 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~--------------------~~~~~d~~~-~~~~~~~fD~i 152 (209)
.++.+|||+|||+|..+..+++. +..+|+++|+++.++ .++.+|+.+ ++..+++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 56789999999999999999985 556999999997633 345566554 23346889999
Q ss_pred Ecccchhh--------hCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 153 FTAHLAEA--------LFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 153 ~~~~~~~~--------~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
++....+. +...++++++.++|||||.+++....
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 197 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence 99643322 12478999999999999999887654
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=6.3e-10 Score=95.14 Aligned_cols=109 Identities=20% Similarity=0.145 Sum_probs=80.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCCc------EEEcCCCCCCCCCCceeeEEccc--c-h-----
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPL------VSRADPHNLPFFDEAFDVAFTAH--L-A----- 158 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~~------~~~~d~~~~~~~~~~fD~i~~~~--~-~----- 158 (209)
.++.+|||+|||+|.++..+++. +..+++|+|+++.+++ ++++|+.+.+ ++++||+|+++- . .
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a~~~~~~~~D~~~~~-~~~~fD~Ii~NPPy~~~~~~~~ 116 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWE-PGEAFDLILGNPPYGIVGEASK 116 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCC-CSSCEEEEEECCCCCCBSCTTT
T ss_pred CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhCCCCcEEeCChhhcC-ccCCCCEEEECcCccCcccccc
Confidence 45679999999999999999973 4469999999998764 6788887765 357899999961 1 0
Q ss_pred ------hhh-C---------------HHHHHHHHHHhcccCcEEEEEEecC--CcccHHHHHHHhccccc
Q 028410 159 ------EAL-F---------------PSRFVGEMERTVKIGGVCMVLMEEC--AGREIKQIVELFRTSSF 204 (209)
Q Consensus 159 ------~~~-~---------------~~~~l~~~~r~LkpgG~lil~~~~~--~~~~~~~~~~l~~~~~~ 204 (209)
... . ...+++.+.+.|||||.+++++... .......+.+.+...+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~ 186 (421)
T 2ih2_A 117 YPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGK 186 (421)
T ss_dssp CSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSE
T ss_pred cccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCC
Confidence 100 0 1267899999999999999998764 23345667766655444
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.7e-11 Score=101.90 Aligned_cols=93 Identities=12% Similarity=-0.022 Sum_probs=70.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCCC-CCCCCceeeEEcccc--
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNL-PFFDEAFDVAFTAHL-- 157 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~~-~~~~~~fD~i~~~~~-- 157 (209)
+++.+|||+|||+|.++..++..|. +|+++|+|+.+++ +.++|+.+. +...+.||+|+++.-
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred cCCCeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 5689999999999999999999876 5999999998553 556676553 121344999998521
Q ss_pred -------hhhh-CHHHHHHHHHHhcccCcEEEEEEecCC
Q 028410 158 -------AEAL-FPSRFVGEMERTVKIGGVCMVLMEECA 188 (209)
Q Consensus 158 -------~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~ 188 (209)
.... +..+++.++.++|||||.++++.....
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~ 330 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH 330 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 1112 447889999999999999887766543
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.7e-11 Score=95.21 Aligned_cols=87 Identities=13% Similarity=0.059 Sum_probs=67.6
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCC----------------CcEEEcCCCC----CCCCC--Ccee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL----------------PLVSRADPHN----LPFFD--EAFD 150 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~----------------~~~~~~d~~~----~~~~~--~~fD 150 (209)
.++.+|||+|||+|..+..+++. + .++++++|+++.+ +.++.+|+.+ ++..+ ++||
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 46789999999999999999984 3 4699999999873 3466777543 22333 7899
Q ss_pred eEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 151 ~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
+|++.... .+...++.++.++|||||.+++.
T Consensus 151 ~V~~d~~~--~~~~~~l~~~~~~LkpgG~lv~~ 181 (232)
T 3cbg_A 151 LIFIDADK--RNYPRYYEIGLNLLRRGGLMVID 181 (232)
T ss_dssp EEEECSCG--GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEECCCH--HHHHHHHHHHHHHcCCCeEEEEe
Confidence 99986431 25688999999999999998774
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-10 Score=96.82 Aligned_cols=92 Identities=22% Similarity=0.321 Sum_probs=69.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC-------------------cEEEcCCCC-CCCCCCceeeEE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP-------------------LVSRADPHN-LPFFDEAFDVAF 153 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~-------------------~~~~~d~~~-~~~~~~~fD~i~ 153 (209)
.++.+|||+|||+|..+..+++. +..+|+++|+++.++ +++.+|+.+ ++..+++||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 46789999999999999999986 567999999997643 345565544 222357899999
Q ss_pred cccch-----hhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 154 TAHLA-----EALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 154 ~~~~~-----~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
++... ..+...++++++.++|||||.+++....
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 86321 1112378999999999999998887644
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=7.7e-11 Score=96.19 Aligned_cols=92 Identities=18% Similarity=0.274 Sum_probs=68.6
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-------------------------EEEcCCCCC-CCCCCc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-------------------------VSRADPHNL-PFFDEA 148 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-------------------------~~~~d~~~~-~~~~~~ 148 (209)
.++.+|||+|||+|..+..+++.+..+|+++|+++.+++ ++.+|+.+. +. +++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 567899999999999999999876679999999876433 444444321 12 578
Q ss_pred eeeEEcccchh-----hhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 149 FDVAFTAHLAE-----ALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 149 fD~i~~~~~~~-----~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
||+|++..... .+...++++++.++|||||.+++.....
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~ 196 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSV 196 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence 99999864321 1123788999999999999988876543
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.11 E-value=3.6e-10 Score=87.37 Aligned_cols=104 Identities=14% Similarity=0.053 Sum_probs=75.4
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC--------------CcEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
..++.+|||+|||+|..+..+++.+..+++|+|+++.+ +.++++|+.+++ ++||+|+++...+
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFG 123 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCS
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCc
Confidence 35788999999999999999998866689999999873 347788888764 4899999974433
Q ss_pred hh---CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 160 AL---FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 160 ~~---~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
.. ....+++++.+.+ ||.++++.. .......+.+.+...++
T Consensus 124 ~~~~~~~~~~l~~~~~~l--~~~~~~~~~--~~~~~~~~~~~l~~~g~ 167 (207)
T 1wy7_A 124 SQRKHADRPFLLKAFEIS--DVVYSIHLA--KPEVRRFIEKFSWEHGF 167 (207)
T ss_dssp SSSTTTTHHHHHHHHHHC--SEEEEEEEC--CHHHHHHHHHHHHHTTE
T ss_pred cccCCchHHHHHHHHHhc--CcEEEEEeC--CcCCHHHHHHHHHHCCC
Confidence 22 2367888888888 565443321 23345556666766665
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.4e-10 Score=96.96 Aligned_cols=92 Identities=18% Similarity=0.272 Sum_probs=70.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC-------------------CcEEEcCCCCC--CCCCCceeeE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL-------------------PLVSRADPHNL--PFFDEAFDVA 152 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~-------------------~~~~~~d~~~~--~~~~~~fD~i 152 (209)
.++.+|||+|||+|..+..+++. +..+|+++|+++.+ +.++.+|+.+. .+++++||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 56789999999999999999985 45699999999763 33566776543 2346799999
Q ss_pred Ecccch-----hhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 153 FTAHLA-----EALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 153 ~~~~~~-----~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+++... ..+....+++++.++|||||.+++....
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 237 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 237 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 985321 1122478999999999999998776443
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.1e-11 Score=94.58 Aligned_cols=88 Identities=11% Similarity=0.133 Sum_probs=68.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCC----------------CcEEEcCCCCC-C------------
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL----------------PLVSRADPHNL-P------------ 143 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~----------------~~~~~~d~~~~-~------------ 143 (209)
.++.+|||+|||+|..+..+++. + .++|+++|+++.+ +.+..+|+.+. +
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 57889999999999999999984 3 4699999999863 34667776441 1
Q ss_pred --CCC--CceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 144 --FFD--EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 144 --~~~--~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
|++ ++||+|++..... +...+++++.+.|||||.+++..
T Consensus 139 ~~f~~~~~~fD~I~~~~~~~--~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDADKE--NYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp TTTCCSTTCEEEEEECSCGG--GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccccCCCCCcCEEEEeCCHH--HHHHHHHHHHHHcCCCeEEEEEc
Confidence 233 7899999864322 45788999999999999988764
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-10 Score=97.76 Aligned_cols=104 Identities=16% Similarity=0.221 Sum_probs=77.7
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcC-CceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEccc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIG-VADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~-~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
..++.+|||+|||+|.++..++..+ .++|+|+|+++.++ .+.++|+.++++++++||+|+++.
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 5788999999999999999999964 35999999998733 488999999998889999999963
Q ss_pred chh-------hh-C-HHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 157 LAE-------AL-F-PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 157 ~~~-------~~-~-~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
... .+ + ...+++++.++| ||.+++++.. ...+.+.+++.|+
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~-----~~~~~~~~~~~G~ 344 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTE-----KKAIEEAIAENGF 344 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESC-----HHHHHHHHHHTTE
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECC-----HHHHHHHHHHcCC
Confidence 211 11 1 267788888888 5665555542 3445556666555
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.5e-11 Score=104.55 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=78.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC--------------cEEEcCCCCCC-CCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP--------------LVSRADPHNLP-FFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~--------------~~~~~d~~~~~-~~~~~fD~i~~~ 155 (209)
...++.+|||+|||+|..+..+++. +.+.|+++|+++.++ .+.++|+.+++ +.+++||+|+++
T Consensus 98 ~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 98 DPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred CcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEEC
Confidence 3478999999999999999999983 346999999998744 36667766654 346899999963
Q ss_pred ------cchhhh-----------------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHH-HHHHhcc
Q 028410 156 ------HLAEAL-----------------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQ-IVELFRT 201 (209)
Q Consensus 156 ------~~~~~~-----------------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~-~~~l~~~ 201 (209)
.+.... ...+++.++.+.|||||++++++......+... +..++++
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~ 247 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKA 247 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHH
Confidence 111100 127789999999999999998887764444443 3334443
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=8.6e-11 Score=92.32 Aligned_cols=87 Identities=18% Similarity=0.159 Sum_probs=67.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCCC----------------cEEEcCCCCC--CCCC----Ccee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSLP----------------LVSRADPHNL--PFFD----EAFD 150 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~~----------------~~~~~d~~~~--~~~~----~~fD 150 (209)
.++.+|||+|||+|..+..+++. + .++|+++|+++.++ .++.+|+.+. .+++ ++||
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 67889999999999999999984 3 56999999998743 4666766442 1211 7899
Q ss_pred eEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 151 ~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
+|++... ..+...+++++.+.|||||.+++.
T Consensus 148 ~v~~d~~--~~~~~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 148 VAVVDAD--KENCSAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp EEEECSC--STTHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCC--HHHHHHHHHHHHHHcCCCeEEEEE
Confidence 9998543 225678999999999999998774
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.09 E-value=7.2e-12 Score=100.18 Aligned_cols=91 Identities=20% Similarity=0.233 Sum_probs=67.5
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-------------EEEcCCCCCCCCC-CceeeEEccc--
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-------------VSRADPHNLPFFD-EAFDVAFTAH-- 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-------------~~~~d~~~~~~~~-~~fD~i~~~~-- 156 (209)
...++.+|||+|||+|..+..+++.+ .+|+|+|+++.+++ ++++|+.++++++ ++| .|+++-
T Consensus 26 ~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py 103 (245)
T 1yub_A 26 NLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KIVGNIPY 103 (245)
T ss_dssp CCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EEEEECCS
T ss_pred CCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc-EEEEeCCc
Confidence 45788999999999999999999976 69999999998653 6788888888764 688 566641
Q ss_pred ---------chhhh-CHHHHH----HHHHHhcccCcEEEEEEe
Q 028410 157 ---------LAEAL-FPSRFV----GEMERTVKIGGVCMVLME 185 (209)
Q Consensus 157 ---------~~~~~-~~~~~l----~~~~r~LkpgG~lil~~~ 185 (209)
+..|. ++...+ +.+.|+|||||.+.+.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~ 146 (245)
T 1yub_A 104 HLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH 146 (245)
T ss_dssp SSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred cccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence 11111 223344 668999999998665543
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.08 E-value=8.9e-11 Score=93.36 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=68.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCC----------------CcEEEcCCCCC-C-C-----CCCce
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL----------------PLVSRADPHNL-P-F-----FDEAF 149 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~----------------~~~~~~d~~~~-~-~-----~~~~f 149 (209)
.++.+|||+|||+|..+..+++. + .++++++|+++.+ +.++.+|+.+. + + ++++|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 56789999999999999999983 3 5799999999873 34677776552 2 2 25789
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
|+|++... ..+...+++++.+.|||||.+++.
T Consensus 149 D~I~~d~~--~~~~~~~l~~~~~~L~pGG~lv~d 180 (237)
T 3c3y_A 149 DFGFVDAD--KPNYIKYHERLMKLVKVGGIVAYD 180 (237)
T ss_dssp EEEEECSC--GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred CEEEECCc--hHHHHHHHHHHHHhcCCCeEEEEe
Confidence 99998532 125688999999999999997764
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.6e-10 Score=95.37 Aligned_cols=92 Identities=24% Similarity=0.259 Sum_probs=68.5
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC-------------------cEEEcCCCC-CCCCCCceeeEE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP-------------------LVSRADPHN-LPFFDEAFDVAF 153 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~-------------------~~~~~d~~~-~~~~~~~fD~i~ 153 (209)
.++.+|||+|||+|..+..+++. +..+|+++|+++.++ +++.+|+.+ ++..+++||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 56789999999999999999986 457999999987643 355666544 333468899999
Q ss_pred cccchhh-----hCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 154 TAHLAEA-----LFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 154 ~~~~~~~-----~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+...... +...++++++.++|||||.+++....
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 8533221 12367899999999999998877644
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-10 Score=105.90 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=73.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC-----------------cEEEcCCCC-CCCCCCceeeEEccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-----------------LVSRADPHN-LPFFDEAFDVAFTAH 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~-----------------~~~~~d~~~-~~~~~~~fD~i~~~~ 156 (209)
.++.+|||+|||+|.++..++..|..+|+++|+|+.++ .++++|+.+ ++..+++||+|+++.
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 57889999999999999999987777899999998743 366777766 344467999999852
Q ss_pred -----------chhhh-CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 157 -----------LAEAL-FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 157 -----------~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
+.... +..+++.++.++|||||.+++.+...
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~ 660 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKR 660 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence 12223 56788999999999999998777663
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=9.1e-11 Score=99.89 Aligned_cols=94 Identities=11% Similarity=0.044 Sum_probs=70.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC-----------------cEEEcCCCCC-C-C--CCCceeeEE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-----------------LVSRADPHNL-P-F--FDEAFDVAF 153 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~-----------------~~~~~d~~~~-~-~--~~~~fD~i~ 153 (209)
.++.+|||+|||+|.++..++..+..+|+++|+|+.++ .++++|+.+. + + ..++||+|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 57789999999999999999987666999999999843 3667776552 2 1 245899999
Q ss_pred ccc---------chhhh-CHHHHHHHHHHhcccCcEEEEEEecCC
Q 028410 154 TAH---------LAEAL-FPSRFVGEMERTVKIGGVCMVLMEECA 188 (209)
Q Consensus 154 ~~~---------~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~ 188 (209)
++. ..... +..+++.++.+.|+|||.+++......
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~ 335 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 335 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 852 11112 345678888999999999888876543
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.4e-10 Score=93.32 Aligned_cols=92 Identities=20% Similarity=0.294 Sum_probs=69.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC-------------------cEEEcCCCCC-CCCCCceeeEE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP-------------------LVSRADPHNL-PFFDEAFDVAF 153 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~-------------------~~~~~d~~~~-~~~~~~fD~i~ 153 (209)
.++.+|||+|||+|..+..+++. +..+++++|+++.++ .++.+|+.+. +..+++||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 56789999999999999999985 457999999997633 3556665442 22367899999
Q ss_pred cccchhh-----hCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 154 TAHLAEA-----LFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 154 ~~~~~~~-----~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+...... +...++++++.++|||||.+++....
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 194 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 194 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence 8532221 12278999999999999998777543
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.1e-10 Score=95.12 Aligned_cols=92 Identities=20% Similarity=0.183 Sum_probs=65.6
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc-------------------EEEcCCCC-CCCCCCceeeEE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL-------------------VSRADPHN-LPFFDEAFDVAF 153 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~-------------------~~~~d~~~-~~~~~~~fD~i~ 153 (209)
.++.+|||+|||+|..+..+++. +..+|+++|+++.+++ ++.+|+.+ ++..+++||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 46689999999999999999985 5579999999976433 44455443 223467899999
Q ss_pred cccchhhh-----CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 154 TAHLAEAL-----FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 154 ~~~~~~~~-----~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+....... ...++++++.++|||||.+++....
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~ 224 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES 224 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCC
Confidence 85432211 1278999999999999998876543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.04 E-value=8.4e-11 Score=101.96 Aligned_cols=111 Identities=17% Similarity=0.136 Sum_probs=79.1
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCCc---------------EEEcCCCCCC-CCCCceeeEEc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPL---------------VSRADPHNLP-FFDEAFDVAFT 154 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~~---------------~~~~d~~~~~-~~~~~fD~i~~ 154 (209)
...++.+|||+|||+|..+..+++. +.+.|+++|+++.+++ +..+|+.+++ ..+++||.|++
T Consensus 102 ~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~ 181 (456)
T 3m4x_A 102 AAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVV 181 (456)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEE
Confidence 3578999999999999999999983 4479999999987442 5566666554 23679999997
Q ss_pred cc------chhh---------------h--CHHHHHHHHHHhcccCcEEEEEEecCCcccHHH-HHHHhcccc
Q 028410 155 AH------LAEA---------------L--FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQ-IVELFRTSS 203 (209)
Q Consensus 155 ~~------~~~~---------------~--~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~-~~~l~~~~~ 203 (209)
+. +... + ...+++.++.+.|||||.+++++.+....+... +..++.+.+
T Consensus 182 DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~ 254 (456)
T 3m4x_A 182 DAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYP 254 (456)
T ss_dssp ECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSS
T ss_pred CCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCC
Confidence 41 1100 0 123789999999999999998887764444433 444555544
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-10 Score=96.62 Aligned_cols=95 Identities=15% Similarity=0.164 Sum_probs=73.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEcccch
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
.++.+|||+|||+|.++.. ++ +..+|+++|+|+.+ +.++.+|+.+.. ++||+|+++.-.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~ 268 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK 268 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT
T ss_pred CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH
Confidence 6889999999999999999 87 56799999999853 347788887765 789999995321
Q ss_pred hhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhc
Q 028410 159 EALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (209)
Q Consensus 159 ~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~ 200 (209)
...+++.++.+.|+|||.++++..... ...+.+.+.
T Consensus 269 ---~~~~~l~~~~~~L~~gG~l~~~~~~~~---~~~~~~~l~ 304 (336)
T 2yx1_A 269 ---FAHKFIDKALDIVEEGGVIHYYTIGKD---FDKAIKLFE 304 (336)
T ss_dssp ---TGGGGHHHHHHHEEEEEEEEEEEEESS---SHHHHHHHH
T ss_pred ---hHHHHHHHHHHHcCCCCEEEEEEeecC---chHHHHHHH
Confidence 134788999999999999888766554 344444444
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.03 E-value=6.4e-11 Score=101.06 Aligned_cols=93 Identities=17% Similarity=0.040 Sum_probs=73.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------------cEEEcCCCCCCC----CCCceeeEEc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------------LVSRADPHNLPF----FDEAFDVAFT 154 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~----~~~~fD~i~~ 154 (209)
+++.+|||+|||+|.++..++..|..+|+++|+++.++ .++.+|+.+... ++++||+|++
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 57899999999999999999998767999999998733 477778766421 2578999999
Q ss_pred cc---------chhhh-CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 155 AH---------LAEAL-FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 155 ~~---------~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
+. +.... +...++.++.+.|||||.++++....
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 52 22222 45788999999999999988777654
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.7e-10 Score=96.54 Aligned_cols=110 Identities=14% Similarity=0.175 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-C-C----ceEEEecCCCCCC--------------cEEEcCCCCCCCCCCceeeEEc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-G-V----ADVTGVELMDSLP--------------LVSRADPHNLPFFDEAFDVAFT 154 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~-~----~~v~~vD~s~~~~--------------~~~~~d~~~~~~~~~~fD~i~~ 154 (209)
.++.+|||+|||+|.++..+++. + . .+++|+|+++.++ .+..+|.... .++++||+|++
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~-~~~~~fD~Ii~ 207 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVIS 207 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCc-cccCCccEEEE
Confidence 46789999999999999998873 2 1 5899999998743 4778887663 34678999999
Q ss_pred ccchhhh-C-----------------H-HHHHHHHHHhcccCcEEEEEEecC--CcccHHHHHHHhcccccc
Q 028410 155 AHLAEAL-F-----------------P-SRFVGEMERTVKIGGVCMVLMEEC--AGREIKQIVELFRTSSFT 205 (209)
Q Consensus 155 ~~~~~~~-~-----------------~-~~~l~~~~r~LkpgG~lil~~~~~--~~~~~~~~~~l~~~~~~~ 205 (209)
+.-+.+. . . ..++.++.+.|||||++++++... +..+...+.+.+...+++
T Consensus 208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~~ 279 (344)
T 2f8l_A 208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHI 279 (344)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEE
T ss_pred CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCeE
Confidence 7432221 1 1 258999999999999999998653 334456677766655543
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.01 E-value=4.2e-10 Score=91.98 Aligned_cols=60 Identities=23% Similarity=0.180 Sum_probs=51.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
...++.+|||+|||+|..+..+++.+. +|+|+|+++.+ +.++.+|+.+.+++ +||+|+++
T Consensus 25 ~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~fD~vv~n 100 (285)
T 1zq9_A 25 ALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVAN 100 (285)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEE
T ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--hhcEEEEe
Confidence 557889999999999999999999754 99999999863 34788999887765 79999995
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=6.1e-10 Score=88.44 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCCCCC
Q 028410 79 TSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPF 144 (209)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~ 144 (209)
..+..+.+..... .++.+|||+|||+|.++..+. +...++|+|+++.+++ +.++|....+.
T Consensus 91 p~ld~fY~~i~~~---~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~ 165 (253)
T 3frh_A 91 AELDTLYDFIFSA---ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPP 165 (253)
T ss_dssp GGHHHHHHHHTSS---CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCC
T ss_pred hhHHHHHHHHhcC---CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCC
Confidence 3344444444333 678899999999999999887 5679999999999765 67888888775
Q ss_pred CCCceeeEEcccchhhh---CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 145 FDEAFDVAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 145 ~~~~fD~i~~~~~~~~~---~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+ +++|++++.-+.+++ .....+ ++...|+++|.+ +.+.
T Consensus 166 ~-~~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~~vv-VsfP 206 (253)
T 3frh_A 166 A-EAGDLALIFKLLPLLEREQAGSAM-ALLQSLNTPRMA-VSFP 206 (253)
T ss_dssp C-CBCSEEEEESCHHHHHHHSTTHHH-HHHHHCBCSEEE-EEEE
T ss_pred C-CCcchHHHHHHHHHhhhhchhhHH-HHHHHhcCCCEE-EEcC
Confidence 4 599999998666666 334344 888899999764 4554
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=6.2e-09 Score=83.84 Aligned_cols=106 Identities=12% Similarity=0.040 Sum_probs=73.0
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCC------CC-------cEEEcCCCCCCCCCCceeeEEcccc
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS------LP-------LVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~------~~-------~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
..++++.+|||+|||+|.+++.+++. +...++|+|+... +. ...+.+++...+++++||+|+|...
T Consensus 70 ~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~a 149 (277)
T 3evf_A 70 GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIG 149 (277)
T ss_dssp TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC
T ss_pred CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCc
Confidence 46689999999999999999998874 6667777777632 21 1345555556677889999999642
Q ss_pred hh----hhCH---HHHHHHHHHhcccC-cEEEEEEecCCcccHHHHHH
Q 028410 158 AE----ALFP---SRFVGEMERTVKIG-GVCMVLMEECAGREIKQIVE 197 (209)
Q Consensus 158 ~~----~~~~---~~~l~~~~r~Lkpg-G~lil~~~~~~~~~~~~~~~ 197 (209)
.+ ..|. ..++..+.++|||| |.+++=+..+-.....++.+
T Consensus 150 pnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~ 197 (277)
T 3evf_A 150 ESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLE 197 (277)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHH
T ss_pred cCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHH
Confidence 22 1222 23468889999999 99888766632333444433
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.00 E-value=5.6e-10 Score=95.26 Aligned_cols=93 Identities=18% Similarity=0.100 Sum_probs=72.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-----------------CcEEEcCCCCCCC----CCCceeeEE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-----------------PLVSRADPHNLPF----FDEAFDVAF 153 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~-----------------~~~~~~d~~~~~~----~~~~fD~i~ 153 (209)
.++.+|||+|||+|.++..++..|..+|+++|+|+.+ +.++.+|+.+... .+++||+|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 5788999999999999999999876799999999753 3467777765421 146899999
Q ss_pred ccc---------chhhh-CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 154 TAH---------LAEAL-FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 154 ~~~---------~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
++. +.... ...+++.++.+.|||||.+++++...
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 962 11222 35788999999999999988877664
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-10 Score=99.19 Aligned_cols=92 Identities=17% Similarity=0.082 Sum_probs=71.7
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCCCC----CCCceeeEEccc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNLPF----FDEAFDVAFTAH 156 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~----~~~~fD~i~~~~ 156 (209)
++.+|||+|||+|.++..++.. ..+|+++|+|+.++ .++++|+.+... .+++||+|+++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 7789999999999999999987 46999999998743 477788766421 257899999952
Q ss_pred ---------chhhh-CHHHHHHHHHHhcccCcEEEEEEecCC
Q 028410 157 ---------LAEAL-FPSRFVGEMERTVKIGGVCMVLMEECA 188 (209)
Q Consensus 157 ---------~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~ 188 (209)
+.... ...+++.++.+.|||||.++++.....
T Consensus 288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 329 (382)
T 1wxx_A 288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 329 (382)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 12222 457789999999999999888876643
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-09 Score=87.06 Aligned_cols=89 Identities=13% Similarity=0.039 Sum_probs=70.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcccchh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
.+..+|||+|||+|.++..++.. +..+++++|+++.+++ +.+.|...-+ +.+++|++++.-+.+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkti~ 209 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKTLP 209 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTCHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHHHHHH
Confidence 66889999999999999999884 7789999999999775 5566665544 578899999988888
Q ss_pred hhCH--H-HHHHHHHHhcccCcEEEEEEec
Q 028410 160 ALFP--S-RFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 160 ~~~~--~-~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+++. . ..+ ++.+.|+|+|.+ +.+..
T Consensus 210 ~Le~q~kg~g~-~ll~aL~~~~vv-VSfp~ 237 (281)
T 3lcv_B 210 CLETQQRGSGW-EVIDIVNSPNIV-VTFPT 237 (281)
T ss_dssp HHHHHSTTHHH-HHHHHSSCSEEE-EEEEC
T ss_pred HhhhhhhHHHH-HHHHHhCCCCEE-Eeccc
Confidence 8833 2 444 999999999975 44443
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3e-09 Score=87.35 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=56.0
Q ss_pred cccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC-------------cEEEcCCCCCCCCCCceeeEEcc
Q 028410 91 KSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-------------LVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~-------------~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.....++.+|||||||+|..+..+++.+ .+|+++|+++.++ .++++|+.++++++.+||.|+++
T Consensus 45 ~l~~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD~Iv~N 121 (295)
T 3gru_A 45 SANLTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFNKVVAN 121 (295)
T ss_dssp HTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCSEEEEE
T ss_pred hcCCCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCccEEEEe
Confidence 3356788999999999999999999985 5999999999754 48899999999888899999986
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.3e-09 Score=87.27 Aligned_cols=60 Identities=18% Similarity=0.274 Sum_probs=47.1
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC---------------CcEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
...++.+|||+|||+|..+..+++.+ .+|+|+|+++.+ +.++.+|+.+.++ .+||+|+++
T Consensus 39 ~~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~--~~~D~Vv~n 113 (299)
T 2h1r_A 39 KIKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVF--PKFDVCTAN 113 (299)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCC--CCCSEEEEE
T ss_pred CCCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCc--ccCCEEEEc
Confidence 45788999999999999999999975 499999999863 3467888887765 489999996
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=5.5e-09 Score=90.15 Aligned_cols=89 Identities=16% Similarity=0.198 Sum_probs=65.0
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC---------------CcEEEcCCCC----CCCCCCceeeEE
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHN----LPFFDEAFDVAF 153 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~---------------~~~~~~d~~~----~~~~~~~fD~i~ 153 (209)
...++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+ +.++++|+.+ +++++++||+|+
T Consensus 283 ~~~~~~~VLDlgcG~G~~~~~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv 361 (433)
T 1uwv_A 283 DVQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 (433)
T ss_dssp TCCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred cCCCCCEEEECCCCCCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence 34678899999999999999999984 599999999863 3488999887 346678999999
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEEEe
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
++--.... .++++.+. .++|++.+++...
T Consensus 362 ~dPPr~g~--~~~~~~l~-~~~p~~ivyvsc~ 390 (433)
T 1uwv_A 362 LDPARAGA--AGVMQQII-KLEPIRIVYVSCN 390 (433)
T ss_dssp ECCCTTCC--HHHHHHHH-HHCCSEEEEEESC
T ss_pred ECCCCccH--HHHHHHHH-hcCCCeEEEEECC
Confidence 85211111 23444444 3789887666543
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.6e-09 Score=86.57 Aligned_cols=67 Identities=19% Similarity=0.278 Sum_probs=51.6
Q ss_pred HHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-------------CcEEEcCCCCCCCCC-Cceee
Q 028410 86 KHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------PLVSRADPHNLPFFD-EAFDV 151 (209)
Q Consensus 86 ~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~-------------~~~~~~d~~~~~~~~-~~fD~ 151 (209)
..+.......++.+|||+|||+|..+..+++.+ .+|+|+|+++.+ +.++++|+.++++++ ..|+
T Consensus 20 ~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~~- 97 (244)
T 1qam_A 20 DKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYK- 97 (244)
T ss_dssp HHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCE-
T ss_pred HHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCeE-
Confidence 333444455788999999999999999999976 599999999753 458899999988764 4564
Q ss_pred EEc
Q 028410 152 AFT 154 (209)
Q Consensus 152 i~~ 154 (209)
|++
T Consensus 98 vv~ 100 (244)
T 1qam_A 98 IFG 100 (244)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=8.7e-09 Score=88.71 Aligned_cols=87 Identities=18% Similarity=0.225 Sum_probs=65.5
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC--------------CcEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
+.++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+ +.++.+|+.++.. + +||+|+++.-..
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~-~-~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV-K-GFDTVIVDPPRA 364 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC-T-TCSEEEECCCTT
T ss_pred cCCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc-c-CCCEEEEcCCcc
Confidence 3788999999999999999999875 499999999874 4588999988743 2 899999853211
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEe
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
.....+++.+. .|+|||.+++.+.
T Consensus 365 -g~~~~~~~~l~-~l~p~givyvsc~ 388 (425)
T 2jjq_A 365 -GLHPRLVKRLN-REKPGVIVYVSCN 388 (425)
T ss_dssp -CSCHHHHHHHH-HHCCSEEEEEESC
T ss_pred -chHHHHHHHHH-hcCCCcEEEEECC
Confidence 11234555554 5999998777654
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.77 E-value=4.7e-08 Score=78.88 Aligned_cols=96 Identities=11% Similarity=-0.074 Sum_probs=66.6
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc-------------EEEcCCCCCCCCCCceeeEEcccc
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL-------------VSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~-------------~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
..++++.+|||+|||+|.+++.+++ .+...|+|+|+...+.. ....++....++.+++|+|+|.-.
T Consensus 86 ~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDmA 165 (282)
T 3gcz_A 86 GYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTLLCDIG 165 (282)
T ss_dssp TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEEEECCC
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEEEecCc
Confidence 3678999999999999999999886 56678999999754211 122222223456789999999632
Q ss_pred hh----hhCH---HHHHHHHHHhcccC--cEEEEEEecC
Q 028410 158 AE----ALFP---SRFVGEMERTVKIG--GVCMVLMEEC 187 (209)
Q Consensus 158 ~~----~~~~---~~~l~~~~r~Lkpg--G~lil~~~~~ 187 (209)
.. ..|. ..++.-+.++|||| |.+++=+..+
T Consensus 166 pnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~p 204 (282)
T 3gcz_A 166 ESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCP 204 (282)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCC
T ss_pred cCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecC
Confidence 22 1111 23467778999999 9987766663
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-08 Score=86.85 Aligned_cols=99 Identities=10% Similarity=0.046 Sum_probs=74.3
Q ss_pred HHhcccCCCCCeEEEEcCCCChhHHHHHhcCC---------------------------------------ceEEEecCC
Q 028410 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGV---------------------------------------ADVTGVELM 128 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~---------------------------------------~~v~~vD~s 128 (209)
+.......++..+||.|||+|.++..++..+. .+|+|+|++
T Consensus 187 ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid 266 (385)
T 3ldu_A 187 LIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDID 266 (385)
T ss_dssp HHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESC
T ss_pred HHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECC
Confidence 34445667889999999999999999876421 379999999
Q ss_pred CCCC----------------cEEEcCCCCCCCCCCceeeEEcccch-----hhhCHHHHHHHHHHhccc--CcEEEEEEe
Q 028410 129 DSLP----------------LVSRADPHNLPFFDEAFDVAFTAHLA-----EALFPSRFVGEMERTVKI--GGVCMVLME 185 (209)
Q Consensus 129 ~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~~~-----~~~~~~~~l~~~~r~Lkp--gG~lil~~~ 185 (209)
+.++ .+.++|+.+++.+ ++||+|+++--. ..-+...+++++.+.||+ ||.+++++.
T Consensus 267 ~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 345 (385)
T 3ldu_A 267 EESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITS 345 (385)
T ss_dssp HHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEEC
Confidence 9844 3788999888764 589999997321 111346677888888887 999888877
Q ss_pred cC
Q 028410 186 EC 187 (209)
Q Consensus 186 ~~ 187 (209)
..
T Consensus 346 ~~ 347 (385)
T 3ldu_A 346 YE 347 (385)
T ss_dssp CT
T ss_pred CH
Confidence 53
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-08 Score=87.02 Aligned_cols=98 Identities=12% Similarity=0.030 Sum_probs=72.7
Q ss_pred HhcccCCCCCeEEEEcCCCChhHHHHHhcCC---------------------------------------ceEEEecCCC
Q 028410 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSIGV---------------------------------------ADVTGVELMD 129 (209)
Q Consensus 89 ~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~---------------------------------------~~v~~vD~s~ 129 (209)
+......++..+||.+||+|.++.+.+..+. .+|+|+|+++
T Consensus 194 l~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~ 273 (393)
T 3k0b_A 194 VLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDA 273 (393)
T ss_dssp HHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCH
T ss_pred HHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCH
Confidence 3344667889999999999999988876321 3599999999
Q ss_pred CCC----------------cEEEcCCCCCCCCCCceeeEEcccc--hh---hhCHHHHHHHHHHhccc--CcEEEEEEec
Q 028410 130 SLP----------------LVSRADPHNLPFFDEAFDVAFTAHL--AE---ALFPSRFVGEMERTVKI--GGVCMVLMEE 186 (209)
Q Consensus 130 ~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~~--~~---~~~~~~~l~~~~r~Lkp--gG~lil~~~~ 186 (209)
.++ .+.++|+.+++.+ .+||+|+++-- .. .-+...+++++.+.||+ ||.+++++..
T Consensus 274 ~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 352 (393)
T 3k0b_A 274 RLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSY 352 (393)
T ss_dssp HHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 743 4889999988764 58999999721 11 11345667777777776 9998888875
Q ss_pred C
Q 028410 187 C 187 (209)
Q Consensus 187 ~ 187 (209)
.
T Consensus 353 ~ 353 (393)
T 3k0b_A 353 E 353 (393)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.71 E-value=3e-08 Score=81.87 Aligned_cols=109 Identities=9% Similarity=-0.009 Sum_probs=74.1
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCC---------------CcEEEcCCCCCCCCC---CceeeE
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL---------------PLVSRADPHNLPFFD---EAFDVA 152 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~---~~fD~i 152 (209)
...++.+|||+|||+|..+..+++. +.++|+++|+++.+ +.++.+|+.+++... ++||.|
T Consensus 99 ~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~V 178 (309)
T 2b9e_A 99 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYI 178 (309)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEE
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEE
Confidence 3478999999999999999999983 45799999999873 347788887765332 579999
Q ss_pred Ecc------cchhh-h-----------C-------HHHHHHHHHHhcccCcEEEEEEecCCcccH-HHHHHHhccc
Q 028410 153 FTA------HLAEA-L-----------F-------PSRFVGEMERTVKIGGVCMVLMEECAGREI-KQIVELFRTS 202 (209)
Q Consensus 153 ~~~------~~~~~-~-----------~-------~~~~l~~~~r~LkpgG~lil~~~~~~~~~~-~~~~~l~~~~ 202 (209)
++. .+... . + ..+++....+.++ ||.++..+......+. ..+.+++++.
T Consensus 179 l~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l~~~ 253 (309)
T 2b9e_A 179 LLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQN 253 (309)
T ss_dssp EECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHHHTTS
T ss_pred EEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHHHHhC
Confidence 973 11111 0 1 1346677777776 9998887766544443 3445555543
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.71 E-value=7.4e-08 Score=70.41 Aligned_cols=61 Identities=15% Similarity=0.018 Sum_probs=51.9
Q ss_pred CCCCeEEEEcCCCC-hhHHHHHh-cCCceEEEecCCCCCCcEEEcCCCCCCCCC-CceeeEEccc
Q 028410 95 FNHSKVLCVSAGAG-HEVMAFNS-IGVADVTGVELMDSLPLVSRADPHNLPFFD-EAFDVAFTAH 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G-~~~~~la~-~~~~~v~~vD~s~~~~~~~~~d~~~~~~~~-~~fD~i~~~~ 156 (209)
.++.+|||||||+| ..+..|++ .|. +|+++|+++.++++++.|+.+..... ..||+|.+.+
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~~v~dDiF~P~~~~Y~~~DLIYsir 97 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGGIVRDDITSPRMEIYRGAALIYSIR 97 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTTEECCCSSSCCHHHHTTEEEEEEES
T ss_pred CCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccceEEccCCCCcccccCCcCEEEEcC
Confidence 66789999999999 69999997 776 99999999999999999998854321 4899998844
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.1e-08 Score=85.27 Aligned_cols=98 Identities=13% Similarity=0.112 Sum_probs=73.7
Q ss_pred HhcccCCCCCeEEEEcCCCChhHHHHHhcCC---------------------------------------ceEEEecCCC
Q 028410 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSIGV---------------------------------------ADVTGVELMD 129 (209)
Q Consensus 89 ~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~---------------------------------------~~v~~vD~s~ 129 (209)
+.....+++..++|.+||+|.++.+.+..+. .+++|+|+++
T Consensus 187 l~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~ 266 (384)
T 3ldg_A 187 ILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDG 266 (384)
T ss_dssp HHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCH
T ss_pred HHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCH
Confidence 3344667889999999999999998876321 3599999999
Q ss_pred CCC----------------cEEEcCCCCCCCCCCceeeEEcccch-----hhhCHHHHHHHHHHhccc--CcEEEEEEec
Q 028410 130 SLP----------------LVSRADPHNLPFFDEAFDVAFTAHLA-----EALFPSRFVGEMERTVKI--GGVCMVLMEE 186 (209)
Q Consensus 130 ~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~~~-----~~~~~~~~l~~~~r~Lkp--gG~lil~~~~ 186 (209)
.++ .+.++|+.+++.+ .+||+|+++--. ..-+...+++++.+.||+ ||.+++++..
T Consensus 267 ~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 345 (384)
T 3ldg_A 267 RMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTND 345 (384)
T ss_dssp HHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESC
T ss_pred HHHHHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECC
Confidence 844 4789999988764 489999997211 111346677778888876 9999888885
Q ss_pred C
Q 028410 187 C 187 (209)
Q Consensus 187 ~ 187 (209)
.
T Consensus 346 ~ 346 (384)
T 3ldg_A 346 T 346 (384)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.70 E-value=2.8e-08 Score=85.98 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=76.8
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc--------------CCceEEEecCCCCC-----------------CcEEEcCCCCC
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI--------------GVADVTGVELMDSL-----------------PLVSRADPHNL 142 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~--------------~~~~v~~vD~s~~~-----------------~~~~~~d~~~~ 142 (209)
..++.+|+|.|||+|.++..+++. ...+++|+|+++.+ ..+.++|....
T Consensus 169 ~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~ 248 (445)
T 2okc_A 169 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK 248 (445)
T ss_dssp CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS
T ss_pred CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCC
Confidence 356789999999999999888763 22489999999862 34677887776
Q ss_pred CCCCCceeeEEcccchhhh---C---------------HHHHHHHHHHhcccCcEEEEEEecC---CcccHHHHHH-Hhc
Q 028410 143 PFFDEAFDVAFTAHLAEAL---F---------------PSRFVGEMERTVKIGGVCMVLMEEC---AGREIKQIVE-LFR 200 (209)
Q Consensus 143 ~~~~~~fD~i~~~~~~~~~---~---------------~~~~l~~~~r~LkpgG~lil~~~~~---~~~~~~~~~~-l~~ 200 (209)
+.. .+||+|+++.-+... + ...+++.+.+.|||||++.+++... .......+.+ +++
T Consensus 249 ~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~~~~~~~~iR~~L~~ 327 (445)
T 2okc_A 249 EPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQ 327 (445)
T ss_dssp CCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHH
T ss_pred ccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCcccccCcHHHHHHHHHHh
Confidence 543 489999997322211 1 1478999999999999999988653 2223344555 444
Q ss_pred cccc
Q 028410 201 TSSF 204 (209)
Q Consensus 201 ~~~~ 204 (209)
.+.+
T Consensus 328 ~~~l 331 (445)
T 2okc_A 328 DFNL 331 (445)
T ss_dssp HEEE
T ss_pred cCcE
Confidence 4443
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.68 E-value=6.1e-08 Score=77.94 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=50.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC-------------cEEEcCCCCCCCCC----CceeeEEc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-------------LVSRADPHNLPFFD----EAFDVAFT 154 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~-------------~~~~~d~~~~~~~~----~~fD~i~~ 154 (209)
...++.+|||+|||+|..+..+++.+ .+|+++|+++.++ .++++|+.++++++ +.|| |++
T Consensus 26 ~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~-vv~ 102 (255)
T 3tqs_A 26 HPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTDKPLR-VVG 102 (255)
T ss_dssp CCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCCSSCEE-EEE
T ss_pred CCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhccCCCeE-EEe
Confidence 56788999999999999999999986 5999999998743 48899999988753 5688 444
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2e-08 Score=81.44 Aligned_cols=61 Identities=23% Similarity=0.183 Sum_probs=51.8
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC------------cEEEcCCCCCCCCCC-ceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP------------LVSRADPHNLPFFDE-AFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~------------~~~~~d~~~~~~~~~-~fD~i~~~ 155 (209)
...++ +|||+|||+|..+..+++.+ .+|+++|+++.++ .++++|+.++++++. .+|.|+++
T Consensus 44 ~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~~iv~N 117 (271)
T 3fut_A 44 RPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSLLVAN 117 (271)
T ss_dssp CCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTEEEEEE
T ss_pred CCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCccEEEec
Confidence 55778 99999999999999999986 5999999999854 478999998887653 68888875
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=6.1e-08 Score=77.64 Aligned_cols=91 Identities=13% Similarity=0.156 Sum_probs=61.0
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-----------CcEEEcCCCCCCCCCCceeeEEcccchhhh
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-----------PLVSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~-----------~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~ 161 (209)
...++.+|||+|||+|..+..+++.+..+|+|+|+++.+ +.++++|+.++++++..-++++..++..+.
T Consensus 28 ~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~vv~NlPy~i 107 (249)
T 3ftd_A 28 NIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKELKVVGNLPYNV 107 (249)
T ss_dssp TCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSEEEEEECCTTT
T ss_pred CCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCcEEEEECchhc
Confidence 557889999999999999999999865699999999863 358889999988765321334444444433
Q ss_pred CHHHHHHHHHHhcccCcEEEEEE
Q 028410 162 FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 162 ~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
...++..+.+....-...++.+
T Consensus 108 -~~~il~~ll~~~~~~~~~~~m~ 129 (249)
T 3ftd_A 108 -ASLIIENTVYNKDCVPLAVFMV 129 (249)
T ss_dssp -HHHHHHHHHHTGGGCSEEEEEE
T ss_pred -cHHHHHHHHhcCCCCceEEEEE
Confidence 2334444444433334444444
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.6e-07 Score=75.03 Aligned_cols=106 Identities=14% Similarity=0.031 Sum_probs=70.2
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC-----------c--EEEcCCCCCCCCCCceeeEEcccc
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP-----------L--VSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~-----------~--~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
..+.++.+|||+||++|.++..+++ .+...|.|+|+...+. + ....++.-..++.+.+|+|+|.-.
T Consensus 77 ~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~A 156 (300)
T 3eld_A 77 GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIG 156 (300)
T ss_dssp TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC
T ss_pred CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCc
Confidence 4668999999999999999999998 4667899999874321 1 122222223455789999999632
Q ss_pred hh----hhCH---HHHHHHHHHhcccC-cEEEEEEecCCcccHHHHHH
Q 028410 158 AE----ALFP---SRFVGEMERTVKIG-GVCMVLMEECAGREIKQIVE 197 (209)
Q Consensus 158 ~~----~~~~---~~~l~~~~r~Lkpg-G~lil~~~~~~~~~~~~~~~ 197 (209)
.. ..|. ..++.-+.++|+|| |.+++=+..+-......+.+
T Consensus 157 PnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~ 204 (300)
T 3eld_A 157 ESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLE 204 (300)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHH
Confidence 22 1111 34467778999999 99877766532334444433
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=4.8e-07 Score=75.98 Aligned_cols=81 Identities=14% Similarity=-0.020 Sum_probs=66.0
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC--------CCcEEEcCCCCCCCCCCceeeEEcccchhhhCHH
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------LPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPS 164 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~--------~~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~ 164 (209)
.+++++++||+||++|.++..+.+.| +.|++||+.+- .+.++++|+.....+.+.||+|+|.... +|.
T Consensus 208 ~l~~G~~vlDLGAaPGGWT~~l~~rg-~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~---~p~ 283 (375)
T 4auk_A 208 RLANGMWAVDLGACPGGWTYQLVKRN-MWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE---KPA 283 (375)
T ss_dssp HSCTTCEEEEETCTTCHHHHHHHHTT-CEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS---CHH
T ss_pred cCCCCCEEEEeCcCCCHHHHHHHHCC-CEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC---ChH
Confidence 45899999999999999999999987 49999998754 3458899999887777899999995444 476
Q ss_pred HHHHHHHHhcccC
Q 028410 165 RFVGEMERTVKIG 177 (209)
Q Consensus 165 ~~l~~~~r~Lkpg 177 (209)
....-+.+.+..|
T Consensus 284 ~~~~l~~~wl~~~ 296 (375)
T 4auk_A 284 KVAALMAQWLVNG 296 (375)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HhHHHHHHHHhcc
Confidence 7777777766665
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.4e-07 Score=75.01 Aligned_cols=108 Identities=13% Similarity=0.025 Sum_probs=69.2
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhc-CC----ceEEEec--CCCCC-----CcEEE---c-CCCCCCCCCCceeeEEcc
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-GV----ADVTGVE--LMDSL-----PLVSR---A-DPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~-~~----~~v~~vD--~s~~~-----~~~~~---~-d~~~~~~~~~~fD~i~~~ 155 (209)
..++++.+|+|+||++|.+++..++. +. +.++|+| +.|.. +.+++ + |+.+++ ...+|+|+|.
T Consensus 69 ~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~--~~~~DvVLSD 146 (269)
T 2px2_A 69 RFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKP--SEISDTLLCD 146 (269)
T ss_dssp TSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSC--CCCCSEEEEC
T ss_pred CCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCC--CCCCCEEEeC
Confidence 36799999999999999999999885 22 4566777 33332 13333 5 887743 5689999995
Q ss_pred cchh----hhCH---HHHHHHHHHhcccCc-EEEEEEecCCcccHH----HHHHHhcc
Q 028410 156 HLAE----ALFP---SRFVGEMERTVKIGG-VCMVLMEECAGREIK----QIVELFRT 201 (209)
Q Consensus 156 ~~~~----~~~~---~~~l~~~~r~LkpgG-~lil~~~~~~~~~~~----~~~~l~~~ 201 (209)
-... ..|. ..++.-+.++|+||| .+++=+......++. .+...|+.
T Consensus 147 MAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~F~~ 204 (269)
T 2px2_A 147 IGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRRFGG 204 (269)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCC
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHHcCC
Confidence 2111 1122 125666669999999 766655554334443 44445554
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.8e-07 Score=76.49 Aligned_cols=93 Identities=24% Similarity=0.322 Sum_probs=73.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC--------------------cEEEcCCCC-CCCCCCceeeE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP--------------------LVSRADPHN-LPFFDEAFDVA 152 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~--------------------~~~~~d~~~-~~~~~~~fD~i 152 (209)
.+..+||-+|.|.|..+.++.+. +..+|+.+|+++..+ +++.+|... +.-.+++||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 67889999999999999999985 567999999998743 267777766 33456889999
Q ss_pred Eccc-----chhhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 153 FTAH-----LAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 153 ~~~~-----~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
+..- ....+...++++.+++.|+|||.++.-...+
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp 201 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVC 201 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEES
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCc
Confidence 9852 2223355889999999999999987766554
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.53 E-value=3e-08 Score=83.79 Aligned_cols=84 Identities=14% Similarity=0.141 Sum_probs=60.4
Q ss_pred CCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCCC--CCC-------------
Q 028410 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNLP--FFD------------- 146 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~--~~~------------- 146 (209)
+.+|||+|||+|.++..+++. ..+|+|+|+++.++ .++.+|+.+.. +.+
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~ 292 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK 292 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGG
T ss_pred CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccc
Confidence 578999999999999999985 45999999998744 36777776531 111
Q ss_pred -CceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 147 -EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 147 -~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.+||+|++..-. ..+..++.+.|+++|.++++...
T Consensus 293 ~~~fD~Vv~dPPr-----~g~~~~~~~~l~~~g~ivyvsc~ 328 (369)
T 3bt7_A 293 SYQCETIFVDPPR-----SGLDSETEKMVQAYPRILYISCN 328 (369)
T ss_dssp GCCEEEEEECCCT-----TCCCHHHHHHHTTSSEEEEEESC
T ss_pred cCCCCEEEECcCc-----cccHHHHHHHHhCCCEEEEEECC
Confidence 379999874211 11345677888899987666543
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.6e-08 Score=86.07 Aligned_cols=87 Identities=14% Similarity=0.087 Sum_probs=66.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCC-----------------CcEEEcCCCCC-C-CCCCceeeEE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL-----------------PLVSRADPHNL-P-FFDEAFDVAF 153 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~-----------------~~~~~~d~~~~-~-~~~~~fD~i~ 153 (209)
+++.+|||++||+|..+..++.. |.++|+++|+++.+ +.++.+|+.+. . ...++||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 46789999999999999999883 54699999999872 44566666442 1 1145799999
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+.- ...+..++..+.+.|+|||.+++..
T Consensus 131 lDP---~g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDP---FGTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECC---SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECC---CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence 854 1234678999999999999876665
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.3e-07 Score=83.21 Aligned_cols=84 Identities=19% Similarity=0.128 Sum_probs=61.5
Q ss_pred CCCeEEEEcCCCChhHHHHHh---cCCc--eEEEecCCCC---------------CCcEEEcCCCCCCCCCCceeeEEcc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS---IGVA--DVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~---~~~~--~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
....|||+|||+|.+.....+ .+.. +|++||.|+. .+.++++|++++.+| +++|+|++-
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSE 435 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSE 435 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECC
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEE
Confidence 446899999999988544433 2222 7899999876 334899999998875 689999995
Q ss_pred cchhhh---CHHHHHHHHHHhcccCcEE
Q 028410 156 HLAEAL---FPSRFVGEMERTVKIGGVC 180 (209)
Q Consensus 156 ~~~~~~---~~~~~l~~~~r~LkpgG~l 180 (209)
.+...+ ...+++....|.|||||.+
T Consensus 436 wMG~fLl~E~mlevL~Ardr~LKPgGim 463 (637)
T 4gqb_A 436 LLGSFADNELSPECLDGAQHFLKDDGVS 463 (637)
T ss_dssp CCBTTBGGGCHHHHHHHHGGGEEEEEEE
T ss_pred cCcccccccCCHHHHHHHHHhcCCCcEE
Confidence 332222 2346777888999999975
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.47 E-value=8.8e-07 Score=74.87 Aligned_cols=93 Identities=12% Similarity=0.015 Sum_probs=64.9
Q ss_pred CCeEEEEcCCCChhHHHHHh---------c-------CCceEEEecCCCCCC-------c--------------------
Q 028410 97 HSKVLCVSAGAGHEVMAFNS---------I-------GVADVTGVELMDSLP-------L-------------------- 133 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~---------~-------~~~~v~~vD~s~~~~-------~-------------------- 133 (209)
+.+|+|+|||+|..+..+.. . +.-+|...|+-.+.- .
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 68999999999998888721 0 234677777655431 0
Q ss_pred E---EEcCCCCCCCCCCceeeEEcccchhhh-C--------------------------------------HHHHHHHHH
Q 028410 134 V---SRADPHNLPFFDEAFDVAFTAHLAEAL-F--------------------------------------PSRFVGEME 171 (209)
Q Consensus 134 ~---~~~d~~~~~~~~~~fD~i~~~~~~~~~-~--------------------------------------~~~~l~~~~ 171 (209)
+ +-+.+..-.||+++||+|+++..+|++ + ...+++..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112223344789999999998777766 2 123578889
Q ss_pred HhcccCcEEEEEEecCCc
Q 028410 172 RTVKIGGVCMVLMEECAG 189 (209)
Q Consensus 172 r~LkpgG~lil~~~~~~~ 189 (209)
+.|+|||++++.+...+.
T Consensus 213 ~eL~pGG~mvl~~~gr~~ 230 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGRTS 230 (374)
T ss_dssp HHEEEEEEEEEEEEECCC
T ss_pred HHhCCCCEEEEEEecCCC
Confidence 999999999999877543
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.3e-07 Score=80.19 Aligned_cols=93 Identities=12% Similarity=0.021 Sum_probs=63.7
Q ss_pred CCeEEEEcCCCChhHHHHHhc------------------CCceEEEecCCCCC------------------------CcE
Q 028410 97 HSKVLCVSAGAGHEVMAFNSI------------------GVADVTGVELMDSL------------------------PLV 134 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~------------------~~~~v~~vD~s~~~------------------------~~~ 134 (209)
..+|+|+|||+|..+..+... +.-+|+..|+-.+- .-+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 689999999999988876542 11256666654221 113
Q ss_pred EEcCCC---CCCCCCCceeeEEcccchhhh-CHH---------------------------------------HHHHHHH
Q 028410 135 SRADPH---NLPFFDEAFDVAFTAHLAEAL-FPS---------------------------------------RFVGEME 171 (209)
Q Consensus 135 ~~~d~~---~~~~~~~~fD~i~~~~~~~~~-~~~---------------------------------------~~l~~~~ 171 (209)
+.+... .-.||+++||+|++++.+|++ +.+ .+|+...
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 345889999999999777776 221 1255558
Q ss_pred HhcccCcEEEEEEecCCc
Q 028410 172 RTVKIGGVCMVLMEECAG 189 (209)
Q Consensus 172 r~LkpgG~lil~~~~~~~ 189 (209)
+.|+|||++++.+...+.
T Consensus 213 ~eL~pGG~mvl~~~gr~~ 230 (384)
T 2efj_A 213 EELISRGRMLLTFICKED 230 (384)
T ss_dssp HHEEEEEEEEEEEECCCT
T ss_pred HHhccCCeEEEEEecCCC
Confidence 999999999999877544
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.5e-07 Score=83.41 Aligned_cols=106 Identities=13% Similarity=0.048 Sum_probs=73.7
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc----C---------------CceEEEecCCCCC--------------------CcE
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI----G---------------VADVTGVELMDSL--------------------PLV 134 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~----~---------------~~~v~~vD~s~~~--------------------~~~ 134 (209)
..++.+|+|.|||+|.+...+++. + ..+++|+|+++.+ ..+
T Consensus 167 p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I 246 (541)
T 2ar0_A 167 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 246 (541)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSE
T ss_pred cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCe
Confidence 356789999999999999887652 1 1379999999862 346
Q ss_pred EEcCCCCCC-CCCCceeeEEcccchhhh---------------CHHHHHHHHHHhcccCcEEEEEEecC---CcccHHHH
Q 028410 135 SRADPHNLP-FFDEAFDVAFTAHLAEAL---------------FPSRFVGEMERTVKIGGVCMVLMEEC---AGREIKQI 195 (209)
Q Consensus 135 ~~~d~~~~~-~~~~~fD~i~~~~~~~~~---------------~~~~~l~~~~r~LkpgG~lil~~~~~---~~~~~~~~ 195 (209)
.++|....+ .+..+||+|+++--+... ....++..+.+.|||||++.+++... .......+
T Consensus 247 ~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~~~i 326 (541)
T 2ar0_A 247 RLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDI 326 (541)
T ss_dssp EESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHH
T ss_pred EeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCcceecCcHHHHH
Confidence 677765533 345789999997221111 12478999999999999999998764 22234455
Q ss_pred HHHh
Q 028410 196 VELF 199 (209)
Q Consensus 196 ~~l~ 199 (209)
.+.+
T Consensus 327 R~~L 330 (541)
T 2ar0_A 327 RRDL 330 (541)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5533
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=5.6e-08 Score=82.42 Aligned_cols=86 Identities=17% Similarity=0.126 Sum_probs=64.2
Q ss_pred CCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC------------------------------cEEEcCCCCCC-
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP------------------------------LVSRADPHNLP- 143 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~------------------------------~~~~~d~~~~~- 143 (209)
++.+|||+|||+|..+..++.. +..+|+++|+++.++ .++++|+.++.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 6889999999999999999984 656899999998733 34455554421
Q ss_pred CCCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 144 FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 144 ~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
...++||+|++... ..+..++..+.+.|||||.+++..
T Consensus 127 ~~~~~fD~I~lDP~---~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDPF---GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECCS---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCCC---CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 11357999996431 134788999999999999876654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=4.1e-07 Score=82.92 Aligned_cols=96 Identities=11% Similarity=0.075 Sum_probs=67.7
Q ss_pred cccCCCCCeEEEEcCCCChhHHHHHhcC-------------------------------------------CceEEEecC
Q 028410 91 KSLLFNHSKVLCVSAGAGHEVMAFNSIG-------------------------------------------VADVTGVEL 127 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~G~~~~~la~~~-------------------------------------------~~~v~~vD~ 127 (209)
.....++..++|.+||+|.++...+..+ ..+++|+|+
T Consensus 185 ~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Di 264 (703)
T 3v97_A 185 RSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDS 264 (703)
T ss_dssp HTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEES
T ss_pred hhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEEC
Confidence 3455788999999999999998877531 137999999
Q ss_pred CCCCC----------------cEEEcCCCCCC--CCCCceeeEEcccch-hhh----CHHHH---HHHHHHhcccCcEEE
Q 028410 128 MDSLP----------------LVSRADPHNLP--FFDEAFDVAFTAHLA-EAL----FPSRF---VGEMERTVKIGGVCM 181 (209)
Q Consensus 128 s~~~~----------------~~~~~d~~~~~--~~~~~fD~i~~~~~~-~~~----~~~~~---l~~~~r~LkpgG~li 181 (209)
++.++ .+.++|+.++. ..+++||+|+++--. ..+ +...+ +.++.+.+.|||.++
T Consensus 265 d~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ 344 (703)
T 3v97_A 265 DARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLS 344 (703)
T ss_dssp CHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEE
Confidence 99854 47899998873 334589999998211 111 22333 445555566899999
Q ss_pred EEEec
Q 028410 182 VLMEE 186 (209)
Q Consensus 182 l~~~~ 186 (209)
++++.
T Consensus 345 ilt~~ 349 (703)
T 3v97_A 345 LFSAS 349 (703)
T ss_dssp EEESC
T ss_pred EEeCC
Confidence 98775
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.39 E-value=4.1e-08 Score=79.06 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=49.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCC-------CC----------------CcEEEcCCCCC-C-CCC--C
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMD-------SL----------------PLVSRADPHNL-P-FFD--E 147 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~-------~~----------------~~~~~~d~~~~-~-~~~--~ 147 (209)
.++.+|||+|||+|..+..++..+ .+|+++|+++ .+ +.++++|+.++ + +++ +
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~g-~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~ 160 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASLG-LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG 160 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHTT-CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred CCcCeEEEeeCccCHHHHHHHHhC-CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence 567899999999999999999986 4999999999 42 45788888763 3 444 7
Q ss_pred ceeeEEccc
Q 028410 148 AFDVAFTAH 156 (209)
Q Consensus 148 ~fD~i~~~~ 156 (209)
+||+|+++.
T Consensus 161 ~fD~V~~dP 169 (258)
T 2r6z_A 161 KPDIVYLDP 169 (258)
T ss_dssp CCSEEEECC
T ss_pred CccEEEECC
Confidence 899999963
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=3.6e-07 Score=76.81 Aligned_cols=105 Identities=14% Similarity=0.088 Sum_probs=74.3
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC---------------------cEEEcCCCCCC-CCCCce
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP---------------------LVSRADPHNLP-FFDEAF 149 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~---------------------~~~~~d~~~~~-~~~~~f 149 (209)
..+++.+|||++||+|.-+.++++. ..+.|+++|+++..+ .+...|...++ ...++|
T Consensus 145 ~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~f 224 (359)
T 4fzv_A 145 GLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTY 224 (359)
T ss_dssp CCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCE
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccC
Confidence 4588999999999999999999985 335899999997622 23444544432 345789
Q ss_pred eeEEcc----cc-----------hhhh----------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHH
Q 028410 150 DVAFTA----HL-----------AEAL----------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVE 197 (209)
Q Consensus 150 D~i~~~----~~-----------~~~~----------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~ 197 (209)
|.|++. .. .... -..+++....+.|||||+++.++.+....+...+.+
T Consensus 225 D~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~vV~ 297 (359)
T 4fzv_A 225 DRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQ 297 (359)
T ss_dssp EEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHHHHH
T ss_pred CEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHHHHH
Confidence 999973 10 0000 015678889999999999999998876555554443
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.34 E-value=6.1e-07 Score=72.97 Aligned_cols=54 Identities=15% Similarity=0.079 Sum_probs=44.5
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCC---ceEEEecCCCCCC-----------cEEEcCCCCCCCCC
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGV---ADVTGVELMDSLP-----------LVSRADPHNLPFFD 146 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~---~~v~~vD~s~~~~-----------~~~~~d~~~~~~~~ 146 (209)
...++.+|||+|||+|..+..+++.+. ++|+|+|+++.++ .++++|+.++++++
T Consensus 39 ~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 39 RPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS 106 (279)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred CCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence 567889999999999999999998643 2399999998744 47899999888654
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.34 E-value=2.1e-07 Score=83.86 Aligned_cols=84 Identities=13% Similarity=0.053 Sum_probs=62.5
Q ss_pred CCeEEEEcCCCChhHHHHHh--c--C----------CceEEEecCCCC---------------CCcEEEcCCCCCCCC--
Q 028410 97 HSKVLCVSAGAGHEVMAFNS--I--G----------VADVTGVELMDS---------------LPLVSRADPHNLPFF-- 145 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~--~--~----------~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~-- 145 (209)
...|||+|||+|.++..... . + ..+|++||.|+. .+.++.+|++++.++
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 56899999999999753221 1 1 239999999874 356899999998764
Q ss_pred ---CCceeeEEcccchhhh---CHHHHHHHHHHhcccCcEE
Q 028410 146 ---DEAFDVAFTAHLAEAL---FPSRFVGEMERTVKIGGVC 180 (209)
Q Consensus 146 ---~~~fD~i~~~~~~~~~---~~~~~l~~~~r~LkpgG~l 180 (209)
.+++|+|++-.+...+ -..+++....+.|||||.+
T Consensus 490 ~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~ 530 (745)
T 3ua3_A 490 DRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTIS 530 (745)
T ss_dssp HTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEE
T ss_pred cCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEE
Confidence 6899999995443222 2356788888999999974
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.34 E-value=4.6e-06 Score=67.57 Aligned_cols=97 Identities=19% Similarity=0.091 Sum_probs=67.0
Q ss_pred HHhcccCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCC--------------CcEEEc-CCCCCCCCCCceee
Q 028410 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSL--------------PLVSRA-DPHNLPFFDEAFDV 151 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~--------------~~~~~~-d~~~~~~~~~~fD~ 151 (209)
+.+...++++..|||+||++|.++.+.+. .|...|+|+|+.... +.+..+ |+..++- ..+|+
T Consensus 86 i~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~--~~~D~ 163 (321)
T 3lkz_A 86 LVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS--ECCDT 163 (321)
T ss_dssp HHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC--CCCSE
T ss_pred HHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC--CCCCE
Confidence 33334678999999999999999998887 577789999998761 124444 6666653 67999
Q ss_pred EEcccchhhh-CH-------HHHHHHHHHhcccC-cEEEEEEecC
Q 028410 152 AFTAHLAEAL-FP-------SRFVGEMERTVKIG-GVCMVLMEEC 187 (209)
Q Consensus 152 i~~~~~~~~~-~~-------~~~l~~~~r~Lkpg-G~lil~~~~~ 187 (209)
|+|.-- +.. ++ .++|.-+.+.|++| |.+++=+-.+
T Consensus 164 ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 164 LLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp EEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred EEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 999521 111 22 33566667889998 8755544443
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.32 E-value=4.6e-07 Score=72.88 Aligned_cols=104 Identities=15% Similarity=0.099 Sum_probs=69.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHh--------cC-----CceEEEecCCCC-------------------------------
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS--------IG-----VADVTGVELMDS------------------------------- 130 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~--------~~-----~~~v~~vD~s~~------------------------------- 130 (209)
++..+|||+|+|+|+.+..+++ .+ ..+++++|..+.
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 4668999999999998887654 22 248999998771
Q ss_pred ------------CCcEEEcCCCC-CCCCC----CceeeEEcccchhhhC----HHHHHHHHHHhcccCcEEEEEEecCCc
Q 028410 131 ------------LPLVSRADPHN-LPFFD----EAFDVAFTAHLAEALF----PSRFVGEMERTVKIGGVCMVLMEECAG 189 (209)
Q Consensus 131 ------------~~~~~~~d~~~-~~~~~----~~fD~i~~~~~~~~~~----~~~~l~~~~r~LkpgG~lil~~~~~~~ 189 (209)
.+.++.+|+.+ ++..+ ..||+|+........+ ..+++.++.+.|||||.++ +.+..
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~--tysaa- 215 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLA--TFTSA- 215 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEE--ESCCB-
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEE--EEeCC-
Confidence 11256677655 34222 3799999854322112 3689999999999999955 44332
Q ss_pred ccHHHHHHHhccccc
Q 028410 190 REIKQIVELFRTSSF 204 (209)
Q Consensus 190 ~~~~~~~~l~~~~~~ 204 (209)
..+...+..+||
T Consensus 216 ---~~vrr~L~~aGF 227 (257)
T 2qy6_A 216 ---GFVRRGLQEAGF 227 (257)
T ss_dssp ---HHHHHHHHHHTE
T ss_pred ---HHHHHHHHHCCC
Confidence 245555555565
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.31 E-value=4.3e-07 Score=72.80 Aligned_cols=62 Identities=13% Similarity=0.035 Sum_probs=45.4
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC-------------cEEEcCCCCCCCCCC-----ceeeEEc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-------------LVSRADPHNLPFFDE-----AFDVAFT 154 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~-------------~~~~~d~~~~~~~~~-----~fD~i~~ 154 (209)
...++.+|||+|||+|..+. ++..+..+|+++|+++.++ .++++|+.++++++. ..|.|++
T Consensus 18 ~~~~~~~VLEIG~G~G~lt~-l~~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~vvs 96 (252)
T 1qyr_A 18 NPQKGQAMVEIGPGLAALTE-PVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFG 96 (252)
T ss_dssp CCCTTCCEEEECCTTTTTHH-HHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHHTSCEEEEE
T ss_pred CCCCcCEEEEECCCCcHHHH-hhhCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhcccCCceEEEE
Confidence 55788999999999999999 7653222399999998743 478888888776432 3456666
Q ss_pred c
Q 028410 155 A 155 (209)
Q Consensus 155 ~ 155 (209)
+
T Consensus 97 N 97 (252)
T 1qyr_A 97 N 97 (252)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=7.7e-06 Score=64.32 Aligned_cols=102 Identities=16% Similarity=0.105 Sum_probs=67.6
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCC--------------CcEEEc-CCCCCCCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSL--------------PLVSRA-DPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~--------------~~~~~~-d~~~~~~~~~~fD~i~~~~ 156 (209)
.++++..|+|+||++|.++.+.+. .+...|+|+|+.... +.|.++ |+..++ ...+|.|+|.-
T Consensus 75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~--~~~~DtllcDI 152 (267)
T 3p8z_A 75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLP--PEKCDTLLCDI 152 (267)
T ss_dssp SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCC--CCCCSEEEECC
T ss_pred CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecC--CccccEEEEec
Confidence 668999999999999999998887 577789999988652 236666 765554 36799999951
Q ss_pred chhhhCH-------HHHHHHHHHhcccCcEEEEEEecCCcccHHHHHH
Q 028410 157 LAEALFP-------SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVE 197 (209)
Q Consensus 157 ~~~~~~~-------~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~ 197 (209)
-...-++ .++|.-+.+.|++ |.+++=+-.+...++-+..+
T Consensus 153 geSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~ 199 (267)
T 3p8z_A 153 GESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLE 199 (267)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHH
T ss_pred CCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHH
Confidence 1111122 3356666788998 66554444433322434443
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.23 E-value=2.3e-07 Score=74.67 Aligned_cols=84 Identities=17% Similarity=0.118 Sum_probs=57.6
Q ss_pred CCCC--CeEEEEcCCCChhHHHHHhcCCceEEEecCCCC------------------------CCcEEEcCCCC-CCCCC
Q 028410 94 LFNH--SKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS------------------------LPLVSRADPHN-LPFFD 146 (209)
Q Consensus 94 ~~~~--~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~------------------------~~~~~~~d~~~-~~~~~ 146 (209)
++++ .+|||+|||+|..+..++..|. +|+++|+++. .+.++++|..+ ++...
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~ 162 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCS
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCc
Confidence 3556 8999999999999999999875 8999999983 13477888766 33223
Q ss_pred CceeeEEcccchhhhCHHHHHHHHHHhcccCc
Q 028410 147 EAFDVAFTAHLAEALFPSRFVGEMERTVKIGG 178 (209)
Q Consensus 147 ~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG 178 (209)
++||+|+++....+-.....+++..+.|++.+
T Consensus 163 ~~fDvV~lDP~y~~~~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 163 PRPQVVYLDPMFPHKQKSALVKKEMRVFQSLV 194 (258)
T ss_dssp SCCSEEEECCCCCCCCC-----HHHHHHHHHS
T ss_pred ccCCEEEEcCCCCCcccchHHHHHHHHHHHhh
Confidence 47999999754433322345666667776654
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.21 E-value=3e-06 Score=71.17 Aligned_cols=95 Identities=9% Similarity=-0.026 Sum_probs=66.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-----------------CCceEEEecCCCCCCc----------------EEE---cC
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-----------------GVADVTGVELMDSLPL----------------VSR---AD 138 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-----------------~~~~v~~vD~s~~~~~----------------~~~---~d 138 (209)
.+..+|+|+||++|..+..+... +.-+|+..|+-.+..+ ++. +.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 45689999999999887765432 1236777786555211 222 33
Q ss_pred CCCCCCCCCceeeEEcccchhhh-C-H--------------------------------HHHHHHHHHhcccCcEEEEEE
Q 028410 139 PHNLPFFDEAFDVAFTAHLAEAL-F-P--------------------------------SRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 139 ~~~~~~~~~~fD~i~~~~~~~~~-~-~--------------------------------~~~l~~~~r~LkpgG~lil~~ 184 (209)
+..-.||++++|++++++..|++ + | ..+|+...+.|+|||++++.+
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 44456899999999998776665 2 1 235888899999999999998
Q ss_pred ecCCc
Q 028410 185 EECAG 189 (209)
Q Consensus 185 ~~~~~ 189 (209)
...+.
T Consensus 210 ~gr~~ 214 (359)
T 1m6e_X 210 LGRRS 214 (359)
T ss_dssp EECSS
T ss_pred ecCCC
Confidence 76544
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=3.2e-07 Score=75.45 Aligned_cols=63 Identities=11% Similarity=0.063 Sum_probs=50.1
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC--------------cEEEcCCCCCC--CC---CCceeeE
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP--------------LVSRADPHNLP--FF---DEAFDVA 152 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~--------------~~~~~d~~~~~--~~---~~~fD~i 152 (209)
..+++.+|||+|||+|..+..+++. +.++|+|+|+|+.++ .++++|+.+++ ++ .++||.|
T Consensus 23 ~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~g~~~~D~V 102 (301)
T 1m6y_A 23 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGI 102 (301)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEE
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhcCCCCCCEE
Confidence 4578899999999999999999985 446999999998754 37788887764 11 2589999
Q ss_pred Ecc
Q 028410 153 FTA 155 (209)
Q Consensus 153 ~~~ 155 (209)
++.
T Consensus 103 l~D 105 (301)
T 1m6y_A 103 LMD 105 (301)
T ss_dssp EEE
T ss_pred EEc
Confidence 874
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.9e-06 Score=74.22 Aligned_cols=108 Identities=18% Similarity=0.118 Sum_probs=75.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc----CCceEEEecCCCCCC-----------------cEEEcCCCCC--C-CCCCcee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI----GVADVTGVELMDSLP-----------------LVSRADPHNL--P-FFDEAFD 150 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~----~~~~v~~vD~s~~~~-----------------~~~~~d~~~~--~-~~~~~fD 150 (209)
.++.+|+|.+||+|.+...+++. +..+++|+|+++.+. .+.++|.... | .+..+||
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD 299 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD 299 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence 46789999999999998887763 245899999998622 3678887665 3 4568899
Q ss_pred eEEccc--chh---------------h--h-----CHHHHHHHHHHhcc-cCcEEEEEEecC---CcccHHHHHHHhccc
Q 028410 151 VAFTAH--LAE---------------A--L-----FPSRFVGEMERTVK-IGGVCMVLMEEC---AGREIKQIVELFRTS 202 (209)
Q Consensus 151 ~i~~~~--~~~---------------~--~-----~~~~~l~~~~r~Lk-pgG~lil~~~~~---~~~~~~~~~~l~~~~ 202 (209)
+|+++- ... + + ....++..+.+.|| |||++.++++.. .......+++.+-..
T Consensus 300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~ 379 (542)
T 3lkd_A 300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLEE 379 (542)
T ss_dssp EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHHT
T ss_pred EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHHHhC
Confidence 999971 000 0 1 01358999999999 999999998764 222345566644433
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.3e-06 Score=74.06 Aligned_cols=106 Identities=14% Similarity=0.043 Sum_probs=71.2
Q ss_pred CeEEEEcCCCChhHHHHHhc--------C--------CceEEEecCCCCCCc--------------E--EEcCCCCCC-C
Q 028410 98 SKVLCVSAGAGHEVMAFNSI--------G--------VADVTGVELMDSLPL--------------V--SRADPHNLP-F 144 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la~~--------~--------~~~v~~vD~s~~~~~--------------~--~~~d~~~~~-~ 144 (209)
.+|+|.+||+|.+...+++. . ..+++|+|+++.+.. + .++|....+ +
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 39999999999988876541 0 248999999987332 2 556654433 4
Q ss_pred CCCceeeEEcccchhh-------------------------h-----CHHHHHHHHHHhcccCcEEEEEEecC---Cc-c
Q 028410 145 FDEAFDVAFTAHLAEA-------------------------L-----FPSRFVGEMERTVKIGGVCMVLMEEC---AG-R 190 (209)
Q Consensus 145 ~~~~fD~i~~~~~~~~-------------------------~-----~~~~~l~~~~r~LkpgG~lil~~~~~---~~-~ 190 (209)
++.+||+|+++--+.. . ....++..+.+.|||||++.+++... +. .
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~ 405 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSNTN 405 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCCGG
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcCcc
Confidence 5689999999711000 1 11368999999999999999998753 22 3
Q ss_pred cHHHHHHHhcccc
Q 028410 191 EIKQIVELFRTSS 203 (209)
Q Consensus 191 ~~~~~~~l~~~~~ 203 (209)
....+++.+-..+
T Consensus 406 ~~~~iRk~Lle~~ 418 (544)
T 3khk_A 406 NEGEIRKTLVEQD 418 (544)
T ss_dssp GHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhCC
Confidence 4556666444333
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.09 E-value=7.2e-06 Score=63.45 Aligned_cols=82 Identities=12% Similarity=-0.055 Sum_probs=59.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC-------------C-----CcEEEcCCCCC--------------
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-------------L-----PLVSRADPHNL-------------- 142 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~-------------~-----~~~~~~d~~~~-------------- 142 (209)
.+..+|||+|| |+.+..+++...++|+++|.+++ . ++++.+|+...
T Consensus 29 ~~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~ 106 (202)
T 3cvo_A 29 EEAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS 106 (202)
T ss_dssp HHCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred hCCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence 46789999998 58888888853479999999986 2 34677886542
Q ss_pred -C--------C-CCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEE
Q 028410 143 -P--------F-FDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (209)
Q Consensus 143 -~--------~-~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil 182 (209)
+ . ..++||+|+...-. ....+....+.|+|||++++
T Consensus 107 l~~~~~~i~~~~~~~~fDlIfIDg~k----~~~~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 107 YPDYPLAVWRTEGFRHPDVVLVDGRF----RVGCALATAFSITRPVTLLF 152 (202)
T ss_dssp TTHHHHGGGGCTTCCCCSEEEECSSS----HHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHhhhhhccccCCCCCEEEEeCCC----chhHHHHHHHhcCCCeEEEE
Confidence 1 1 23789999985421 23556667799999998744
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.04 E-value=8.4e-06 Score=74.63 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=72.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-C---CceEEEecCCCCCCcE---------------------EEcCCCCC-CCCCCc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-G---VADVTGVELMDSLPLV---------------------SRADPHNL-PFFDEA 148 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~---~~~v~~vD~s~~~~~~---------------------~~~d~~~~-~~~~~~ 148 (209)
.++.+|||.|||+|.++..+++. + ..+++|+|+++.++.. ...|..+. +....+
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 46889999999999999998873 2 2479999999874432 11222221 224578
Q ss_pred eeeEEcc--cchhh---------------------------hC-HHHHHHHHHHhcccCcEEEEEEecCC----cccHHH
Q 028410 149 FDVAFTA--HLAEA---------------------------LF-PSRFVGEMERTVKIGGVCMVLMEECA----GREIKQ 194 (209)
Q Consensus 149 fD~i~~~--~~~~~---------------------------~~-~~~~l~~~~r~LkpgG~lil~~~~~~----~~~~~~ 194 (209)
||+|+++ +.... .+ ...++..+.+.|||||++.+++...- ......
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~~kk 479 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNESKA 479 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHHHHH
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChHHHH
Confidence 9999997 11100 01 23477889999999999999988742 123455
Q ss_pred HHHH-hccccc
Q 028410 195 IVEL-FRTSSF 204 (209)
Q Consensus 195 ~~~l-~~~~~~ 204 (209)
+.+. ++++.+
T Consensus 480 LRk~LLe~~~I 490 (878)
T 3s1s_A 480 FREFLVGNFGL 490 (878)
T ss_dssp HHHHHTTTTCE
T ss_pred HHHHHHhCCCe
Confidence 6664 444444
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.6e-06 Score=74.02 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=48.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-----------------CcEEEcCCCCC-CC-CCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-----------------PLVSRADPHNL-PF-FDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~-----------------~~~~~~d~~~~-~~-~~~~fD~i~~~ 155 (209)
.++.+|||+|||+|..+..+++.+ .+|+++|+|+.+ +.++++|+.+. +. ++++||+|+++
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~g-~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCCEEEEeCCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 458999999999999999999876 499999999873 34677777763 32 24689999995
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=2e-05 Score=66.47 Aligned_cols=93 Identities=17% Similarity=0.088 Sum_probs=65.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-----------------------EEEcCCCCC----CCCCC
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-----------------------VSRADPHNL----PFFDE 147 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-----------------------~~~~d~~~~----~~~~~ 147 (209)
.++.+||-+|.|.|..+.++.+.+..+|+.+|+++..++ ++.+|..+. .-..+
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 457899999999999999999876679999999998554 222222110 01235
Q ss_pred ceeeEEcccch-----------hhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 148 AFDVAFTAHLA-----------EALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 148 ~fD~i~~~~~~-----------~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
+||+|+..-.. ..+...++++.+++.|+|||.++.-....
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~ 334 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCV 334 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEET
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 79999985211 12234788899999999999976655443
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.85 E-value=3.4e-05 Score=62.54 Aligned_cols=118 Identities=13% Similarity=0.176 Sum_probs=72.3
Q ss_pred HHHHHHHHHh-cccCCCCCeEEEEcC------CCChhHHHHHhc-CC-ceEEEecCCCCCC---cEEEcCCCCCCCCCCc
Q 028410 81 YAHFFKHLQG-KSLLFNHSKVLCVSA------GAGHEVMAFNSI-GV-ADVTGVELMDSLP---LVSRADPHNLPFFDEA 148 (209)
Q Consensus 81 ~~~~~~~l~~-~~~~~~~~~iLDiGc------G~G~~~~~la~~-~~-~~v~~vD~s~~~~---~~~~~d~~~~~~~~~~ 148 (209)
+..+...+-. .-....+++|||+|+ -+|. ..++++ +. +.|+++|+++-.. -++++|...... .++
T Consensus 93 ytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~sda~~~IqGD~~~~~~-~~k 169 (344)
T 3r24_A 93 YTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVHT-ANK 169 (344)
T ss_dssp HHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBCSSSEEEESCGGGEEE-SSC
T ss_pred HHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCcccccCCCeEEEcccccccc-CCC
Confidence 3444444422 223477899999997 4555 234443 33 4999999987532 368999766443 588
Q ss_pred eeeEEcc---cchhh--------hCH-HHHHHHHHHhcccCcEEEEEEecCC-cccHHHHHHHhcc
Q 028410 149 FDVAFTA---HLAEA--------LFP-SRFVGEMERTVKIGGVCMVLMEECA-GREIKQIVELFRT 201 (209)
Q Consensus 149 fD~i~~~---~~~~~--------~~~-~~~l~~~~r~LkpgG~lil~~~~~~-~~~~~~~~~l~~~ 201 (209)
||+|+|. +...+ ... +.++.-+.++|+|||.+++=+.... ......+.+.|..
T Consensus 170 ~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~~~L~~lrk~F~~ 235 (344)
T 3r24_A 170 WDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSW 235 (344)
T ss_dssp EEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEE
T ss_pred CCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCHHHHHHHHhhCCe
Confidence 9999995 11111 123 4555666789999999887766543 3334444444443
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.77 E-value=8.4e-05 Score=60.36 Aligned_cols=88 Identities=11% Similarity=-0.022 Sum_probs=63.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc------CCceEEEecCCCC--------------------------------------
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI------GVADVTGVELMDS-------------------------------------- 130 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~------~~~~v~~vD~s~~-------------------------------------- 130 (209)
..+..|||+|+..|..+..++.. +.++|+++|..+.
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 55789999999999999988762 2568999996432
Q ss_pred -----CCcEEEcCCCC-CC-CCCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 131 -----LPLVSRADPHN-LP-FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 131 -----~~~~~~~d~~~-~~-~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
.+.++.||+.+ ++ +++++||+|+... ..+......+..+.+.|+|||.+++-
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDa-D~y~~~~~~Le~~~p~L~pGGiIv~D 243 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDG-DLYESTWDTLTNLYPKVSVGGYVIVD 243 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECC-CSHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcC-CccccHHHHHHHHHhhcCCCEEEEEc
Confidence 23466777654 33 4467899998853 22223467889999999999985443
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00075 Score=59.50 Aligned_cols=110 Identities=17% Similarity=0.154 Sum_probs=70.5
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc----C----------CceEEEecCCCCCC---------------cEEEcCCCCCCC-
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI----G----------VADVTGVELMDSLP---------------LVSRADPHNLPF- 144 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~----~----------~~~v~~vD~s~~~~---------------~~~~~d~~~~~~- 144 (209)
.++.+|+|-+||+|.+.....+. . ...++|+|+++.+. .+..+|....|.
T Consensus 216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~ 295 (530)
T 3ufb_A 216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLR 295 (530)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGG
T ss_pred CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchh
Confidence 56779999999999998776541 1 23699999988632 255666655443
Q ss_pred ---CCCceeeEEcccchh-------------hh---C-HHHHHHHHHHhcc-------cCcEEEEEEecC---CcccHHH
Q 028410 145 ---FDEAFDVAFTAHLAE-------------AL---F-PSRFVGEMERTVK-------IGGVCMVLMEEC---AGREIKQ 194 (209)
Q Consensus 145 ---~~~~fD~i~~~~~~~-------------~~---~-~~~~l~~~~r~Lk-------pgG~lil~~~~~---~~~~~~~ 194 (209)
+..+||+|+++--+. .. + ...++..+.+.|| |||++.++++.. .......
T Consensus 296 ~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~~~ 375 (530)
T 3ufb_A 296 EMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGISAR 375 (530)
T ss_dssp GCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCTHHHH
T ss_pred hhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecchhhhccchHHH
Confidence 235799999971110 00 1 1446788888887 699999998863 2222334
Q ss_pred HHH-Hhccccc
Q 028410 195 IVE-LFRTSSF 204 (209)
Q Consensus 195 ~~~-l~~~~~~ 204 (209)
+++ +++++.+
T Consensus 376 iRk~Lle~~~l 386 (530)
T 3ufb_A 376 IKEELLKNFNL 386 (530)
T ss_dssp HHHHHHHHSEE
T ss_pred HHHHHhhcCEE
Confidence 555 4444443
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00032 Score=71.93 Aligned_cols=90 Identities=26% Similarity=0.231 Sum_probs=45.6
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cC-----CceEEEecCCCCCCc----------EEEc--CCCCC-CCCCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IG-----VADVTGVELMDSLPL----------VSRA--DPHNL-PFFDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~-----~~~v~~vD~s~~~~~----------~~~~--d~~~~-~~~~~~fD~i~~~ 155 (209)
.+..+||+||.|+|..+..+.+ .+ ..+++-.|+|+...+ .... |..+. ++...+||+|++.
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~ 1318 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCN 1318 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEc
Confidence 4678999999999977665543 21 347888999977542 1111 33232 3456789999999
Q ss_pred cchhhh-CHHHHHHHHHHhcccCcEEEEEE
Q 028410 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 156 ~~~~~~-~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
++.+.. +....+.++++.|||||++++..
T Consensus 1319 ~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1319 CALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp CC--------------------CCEEEEEE
T ss_pred ccccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence 888766 78889999999999999987754
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00037 Score=56.83 Aligned_cols=38 Identities=32% Similarity=0.350 Sum_probs=34.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL 133 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~ 133 (209)
.++..|||.+||+|..+..+++.|. +++|+|+++.+++
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~ 271 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQ 271 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHH
Confidence 6889999999999999999998875 9999999988655
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00093 Score=54.02 Aligned_cols=61 Identities=11% Similarity=0.017 Sum_probs=47.3
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC-----------cEEEcCCCCCC-----CCCCceeeEEc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-----------LVSRADPHNLP-----FFDEAFDVAFT 154 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~-----------~~~~~d~~~~~-----~~~~~fD~i~~ 154 (209)
.++++..++|.+||.|..+..+++. .++|+|+|.++.++ .++++++.+++ ...+++|.|++
T Consensus 19 ~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g~~~vDgIL~ 95 (285)
T 1wg8_A 19 AVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILA 95 (285)
T ss_dssp TCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcCCCCcCEEEe
Confidence 4578899999999999999999997 46999999999754 35666666543 12256888875
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0031 Score=51.59 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=65.9
Q ss_pred CCCCeEEEEcCCCChhHHHHH----h-cCCc--eEEEecCCCCC-----------------------------CcEEEcC
Q 028410 95 FNHSKVLCVSAGAGHEVMAFN----S-IGVA--DVTGVELMDSL-----------------------------PLVSRAD 138 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la----~-~~~~--~v~~vD~s~~~-----------------------------~~~~~~d 138 (209)
++.-+|||+|=|+|....... + .+.. .++.+|..+-. +.+..+|
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD 174 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence 456789999999998654322 1 2333 45666643210 0144566
Q ss_pred CCC-CC-CCCCceeeEEcccchhhhCH----HHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 139 PHN-LP-FFDEAFDVAFTAHLAEALFP----SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 139 ~~~-~~-~~~~~fD~i~~~~~~~~~~~----~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+.+ ++ +++..||+++...+.-..+| .++++.+.+.++|||. +++.+.. ..++.-+..+||
T Consensus 175 a~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~--laTYtaa----g~VRR~L~~aGF 240 (308)
T 3vyw_A 175 ARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGY--WVSYSSS----LSVRKSLLTLGF 240 (308)
T ss_dssp HHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEE--EEESCCC----HHHHHHHHHTTC
T ss_pred HHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcE--EEEEeCc----HHHHHHHHHCCC
Confidence 544 22 34568999998654443455 7899999999999998 5555532 456666777777
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.016 Score=48.76 Aligned_cols=93 Identities=19% Similarity=0.078 Sum_probs=61.2
Q ss_pred cccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE------EEcCCCCCCC---------CCCceeeEE
Q 028410 91 KSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV------SRADPHNLPF---------FDEAFDVAF 153 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~------~~~d~~~~~~---------~~~~fD~i~ 153 (209)
...++++.+||-+|+|. |..+..+++ .|..+|+++|.+++..++ ...|..+..+ ....+|+|+
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvvi 259 (398)
T 2dph_A 180 SAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGV 259 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEEE
Confidence 34678999999999876 777778877 576689999988763321 1122222111 123699998
Q ss_pred cccchh---------hhCHHHHHHHHHHhcccCcEEEEE
Q 028410 154 TAHLAE---------ALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 154 ~~~~~~---------~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
...-.. +..+...+.+..+.|+|||+++++
T Consensus 260 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 260 DAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp ECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred ECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 742211 112345788999999999997654
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.011 Score=49.22 Aligned_cols=92 Identities=14% Similarity=0.120 Sum_probs=60.5
Q ss_pred HHhcccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC-------CCCCceee
Q 028410 88 LQGKSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP-------FFDEAFDV 151 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~-------~~~~~fD~ 151 (209)
+.....++++.+||-+|+|. |..+..+++ .|..+|+++|.+++..++ ...|..+.. ..++.+|+
T Consensus 182 l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~ 261 (371)
T 1f8f_A 182 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNF 261 (371)
T ss_dssp HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcE
Confidence 33445678999999999876 777777777 576579999988764331 111221111 11236999
Q ss_pred EEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 152 i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
|+...- ....+.+..+.|+|||+++++-
T Consensus 262 vid~~g-----~~~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 262 ALESTG-----SPEILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp EEECSC-----CHHHHHHHHHTEEEEEEEEECC
T ss_pred EEECCC-----CHHHHHHHHHHHhcCCEEEEeC
Confidence 986321 2356788999999999987653
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.014 Score=46.42 Aligned_cols=38 Identities=16% Similarity=0.234 Sum_probs=33.4
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP 132 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~ 132 (209)
..++..|||..||+|..+.+..+.|. +++|+|+++..+
T Consensus 210 ~~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~ 247 (260)
T 1g60_A 210 SNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYV 247 (260)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHH
Confidence 37899999999999999999988874 999999987643
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0076 Score=48.70 Aligned_cols=108 Identities=15% Similarity=-0.026 Sum_probs=75.8
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-------------EEEcCCCC-CC---CCCCceeeEEcccch
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-------------VSRADPHN-LP---FFDEAFDVAFTAHLA 158 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-------------~~~~d~~~-~~---~~~~~fD~i~~~~~~ 158 (209)
++..+||+=+|||..+.++...+ .+++.+|.++.... ++..|... +. -+..+||+|+..--.
T Consensus 91 n~~~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 91 NLNSTLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred cCCCceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 35678999999999999988854 69999999887443 44445322 11 134579999996433
Q ss_pred hh-hCHHHHHHHHHH--hcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 159 EA-LFPSRFVGEMER--TVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 159 ~~-~~~~~~l~~~~r--~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+. -+..+++..+.+ .+.|+|.+++=....+....+.+.+-+++.++
T Consensus 170 e~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~~~~~ 218 (283)
T 2oo3_A 170 ERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISS 218 (283)
T ss_dssp CSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCS
T ss_pred CCCcHHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHHhcCC
Confidence 32 134566666655 45689998888888887778888877766655
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.046 Score=44.00 Aligned_cols=88 Identities=15% Similarity=0.038 Sum_probs=51.0
Q ss_pred ceEEEecCCCCCCcEEEcCCCCCCCCCCceeeEEcc----cchhh----hC----HHHHHHHHHHhcccCcEEEEEEecC
Q 028410 120 ADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTA----HLAEA----LF----PSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 120 ~~v~~vD~s~~~~~~~~~d~~~~~~~~~~fD~i~~~----~~~~~----~~----~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
.+|+-+++.+.+.-...+|+...+. .+++|+|+++ ...++ .| ..-++....++|+|||.++.-+...
T Consensus 179 k~v~wi~Pi~GAt~~~~lDfg~p~~-~~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~Kvygg 257 (320)
T 2hwk_A 179 KMVDWLSDRPEATFRARLDLGIPGD-VPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGY 257 (320)
T ss_dssp SEEEEEESSTTCSEECCGGGCSCTT-SCCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCC
T ss_pred ceeEeeccCCCceeecccccCCccc-cCcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecC
Confidence 3555555544433333666665443 3779999995 11111 11 1235677789999999988877765
Q ss_pred C-cccHHHHHHHhccccccccc
Q 028410 188 A-GREIKQIVELFRTSSFTEAV 208 (209)
Q Consensus 188 ~-~~~~~~~~~l~~~~~~~~~~ 208 (209)
+ ..+...+..+-++...++.+
T Consensus 258 aDr~se~lv~~LaR~F~~Vr~v 279 (320)
T 2hwk_A 258 ADRASESIIGAIARQFKFSRVC 279 (320)
T ss_dssp CSHHHHHHHHHHHTTEEEEEEE
T ss_pred CcccHHHHHHHHHHhcceeeee
Confidence 4 23444455555555555544
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.87 E-value=0.023 Score=47.80 Aligned_cols=92 Identities=20% Similarity=0.105 Sum_probs=61.2
Q ss_pred ccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE------EEcCCCCCC---------CCCCceeeEEc
Q 028410 92 SLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV------SRADPHNLP---------FFDEAFDVAFT 154 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~------~~~d~~~~~---------~~~~~fD~i~~ 154 (209)
..++++.+||-+|+|. |..+..+++ .|..+|+++|.+++..++ ...|..+.. .....+|+|+.
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dvvid 260 (398)
T 1kol_A 181 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVD 260 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCEEEE
Confidence 4568999999999875 677777777 576689999998763321 112222211 01236999987
Q ss_pred ccc----------hhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 155 AHL----------AEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 155 ~~~----------~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
..- .++.++...+.+..+.|++||+++++
T Consensus 261 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 261 AVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp CCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 421 12224566889999999999997665
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.031 Score=46.64 Aligned_cols=90 Identities=19% Similarity=0.177 Sum_probs=59.7
Q ss_pred hcccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC----------CCCCcee
Q 028410 90 GKSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP----------FFDEAFD 150 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~----------~~~~~fD 150 (209)
....++++.+||-+|+|. |..+..+++ .|..+|+++|.+++..++ ...|..+.. ..++.+|
T Consensus 176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~D 255 (370)
T 4ej6_A 176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVD 255 (370)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEE
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCC
Confidence 344678999999999864 666667776 576699999988763321 112222111 2234799
Q ss_pred eEEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 151 ~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+|+...- ....+.+..+.|++||+++++-
T Consensus 256 vvid~~G-----~~~~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 256 VVIECAG-----VAETVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp EEEECSC-----CHHHHHHHHHHEEEEEEEEECS
T ss_pred EEEECCC-----CHHHHHHHHHHhccCCEEEEEe
Confidence 9986321 2356788999999999987653
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.051 Score=44.74 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=56.7
Q ss_pred cCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCc--------EEEcCCCCCCCCCCceeeEEcccchhhhC
Q 028410 93 LLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPL--------VSRADPHNLPFFDEAFDVAFTAHLAEALF 162 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~--------~~~~d~~~~~~~~~~fD~i~~~~~~~~~~ 162 (209)
.++++.+||-+|+|. |..+..+++ .|. +|+++|.+++..+ ....+...+ .+.+|+|+...-.
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~---~~~~D~vid~~g~---- 244 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALSMGVKHFYTDPKQC---KEELDFIISTIPT---- 244 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHHTTCSEEESSGGGC---CSCEEEEEECCCS----
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCeecCCHHHH---hcCCCEEEECCCc----
Confidence 668999999999875 667777777 576 9999999987554 111222111 2279999863211
Q ss_pred HHHHHHHHHHhcccCcEEEEEE
Q 028410 163 PSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 163 ~~~~l~~~~r~LkpgG~lil~~ 184 (209)
...+....+.|+|||+++++-
T Consensus 245 -~~~~~~~~~~l~~~G~iv~~G 265 (348)
T 3two_A 245 -HYDLKDYLKLLTYNGDLALVG 265 (348)
T ss_dssp -CCCHHHHHTTEEEEEEEEECC
T ss_pred -HHHHHHHHHHHhcCCEEEEEC
Confidence 124677889999999987763
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.55 E-value=0.015 Score=48.28 Aligned_cols=89 Identities=15% Similarity=0.089 Sum_probs=57.4
Q ss_pred cccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCC--C-CC-------CCCCceee
Q 028410 91 KSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPH--N-LP-------FFDEAFDV 151 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~--~-~~-------~~~~~fD~ 151 (209)
...++++.+||-+|+|. |..+..+++ .|..+|+++|.++...++ ...|.. + .. ...+.+|+
T Consensus 166 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~ 245 (356)
T 1pl8_A 166 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEV 245 (356)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCE
Confidence 34568999999999875 677777777 576689999988763321 111211 0 00 00146888
Q ss_pred EEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 152 i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
|+...- ....+.+..+.|+|||+++.+-
T Consensus 246 vid~~g-----~~~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 246 TIECTG-----AEASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp EEECSC-----CHHHHHHHHHHSCTTCEEEECS
T ss_pred EEECCC-----ChHHHHHHHHHhcCCCEEEEEe
Confidence 876321 1345778899999999987653
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.19 Score=40.89 Aligned_cols=105 Identities=11% Similarity=0.130 Sum_probs=69.3
Q ss_pred CeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------EEEcCCCCCCCC-CCceeeEEcc------cch---
Q 028410 98 SKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------VSRADPHNLPFF-DEAFDVAFTA------HLA--- 158 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------~~~~d~~~~~~~-~~~fD~i~~~------~~~--- 158 (209)
++|+|+-||.|.+...+.+.|+.-+.++|+++.+.+ ++.+|+.++... -..+|+++.. ...
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag~~ 80 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGGSL 80 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCCSEEEESCGGGCCGGGSCCCSEEECCCCGGGTEETTEE
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCCCcccCChhhCCHhhCCcccEEEecCCCCCcCCCCCc
Confidence 479999999999999888888878889999998654 678888886532 2468999874 011
Q ss_pred hhh-CHH-HHHH---HHHHhcccCcEEEEEEecCC------cccHHHHHHHhccccc
Q 028410 159 EAL-FPS-RFVG---EMERTVKIGGVCMVLMEECA------GREIKQIVELFRTSSF 204 (209)
Q Consensus 159 ~~~-~~~-~~l~---~~~r~LkpgG~lil~~~~~~------~~~~~~~~~l~~~~~~ 204 (209)
... |+. .++. ++.+.+||.-. +..+..+ ...+..+.+.|...|+
T Consensus 81 ~g~~d~R~~L~~~~~r~i~~~~Pk~~--~~ENV~gl~~~~~~~~~~~i~~~l~~~GY 135 (331)
T 3ubt_Y 81 RGIDDPRGKLFYEYIRILKQKKPIFF--LAENVKGMMAQRHNKAVQEFIQEFDNAGY 135 (331)
T ss_dssp CCTTCGGGHHHHHHHHHHHHHCCSEE--EEEECCGGGGCTTSHHHHHHHHHHHHHTE
T ss_pred cCCCCchhHHHHHHHHHHhccCCeEE--EeeeecccccccccchhhhhhhhhccCCc
Confidence 111 332 3333 45556788643 4444432 3456667777776665
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=94.42 E-value=0.11 Score=42.64 Aligned_cols=106 Identities=12% Similarity=0.011 Sum_probs=66.9
Q ss_pred CCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------EEEcCCCCCCCC-CCceeeEEcc---------cch
Q 028410 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------VSRADPHNLPFF-DEAFDVAFTA---------HLA 158 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------~~~~d~~~~~~~-~~~fD~i~~~---------~~~ 158 (209)
+.+++|+.||.|..+..+.+.|...+.++|+++.+.+ ...+|+.++... -..+|+++.. .--
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ag~~ 90 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAGFPCQAFSISGKQ 90 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCCBSCGGGSCGGGSCCCSEEEEECCCTTTCTTSCC
T ss_pred CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCCcCCHHHcCHhhCCCCCEEEECCCCCCcchhccc
Confidence 5799999999999999998888878999999987433 225677665321 1358999975 000
Q ss_pred hhh-CH----HHHHHHHHHhcccCcEEEEEEecCCc------ccHHHHHHHhccccc
Q 028410 159 EAL-FP----SRFVGEMERTVKIGGVCMVLMEECAG------REIKQIVELFRTSSF 204 (209)
Q Consensus 159 ~~~-~~----~~~l~~~~r~LkpgG~lil~~~~~~~------~~~~~~~~l~~~~~~ 204 (209)
... |+ -.-+.++.+.+||.-. +..+..+- ..+..+.+.|+..|+
T Consensus 91 ~g~~d~r~~L~~~~~r~i~~~~P~~~--~~ENV~gl~~~~~~~~~~~i~~~l~~~GY 145 (327)
T 2c7p_A 91 KGFEDSRGTLFFDIARIVREKKPKVV--FMENVKNFASHDNGNTLEVVKNTMNELDY 145 (327)
T ss_dssp CGGGSTTSCHHHHHHHHHHHHCCSEE--EEEEEGGGGTGGGGHHHHHHHHHHHHTTB
T ss_pred CCCcchhhHHHHHHHHHHHhccCcEE--EEeCcHHHHhccccHHHHHHHHHHHhCCC
Confidence 011 22 2233445556788644 44444321 245667777776665
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=94.42 E-value=0.027 Score=46.69 Aligned_cols=106 Identities=9% Similarity=0.081 Sum_probs=65.9
Q ss_pred CCeEEEEcCCCChhHHHHHhcC--CceEEEecCCCCCC----------cEEEcCCCCCCC---CCCceeeEEcccc----
Q 028410 97 HSKVLCVSAGAGHEVMAFNSIG--VADVTGVELMDSLP----------LVSRADPHNLPF---FDEAFDVAFTAHL---- 157 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~~--~~~v~~vD~s~~~~----------~~~~~d~~~~~~---~~~~fD~i~~~~~---- 157 (209)
..+++|+.||.|.++..+.+.| ...|.++|+++.++ .++.+|+.++.. +...+|+++...-
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence 4689999999999999998877 45799999998733 356788877642 1126899998511
Q ss_pred --h---hhh-CHH-HHHHHHHHhc---c--cCcEEEEEEecCC---cccHHHHHHHhccccc
Q 028410 158 --A---EAL-FPS-RFVGEMERTV---K--IGGVCMVLMEECA---GREIKQIVELFRTSSF 204 (209)
Q Consensus 158 --~---~~~-~~~-~~l~~~~r~L---k--pgG~lil~~~~~~---~~~~~~~~~l~~~~~~ 204 (209)
. ... |+. .++.++.+++ + |. +++..+..+ ...+..+.+.|...|+
T Consensus 82 S~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~--~~~~ENV~~l~~~~~~~~i~~~l~~~GY 141 (343)
T 1g55_A 82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKGFEVSSTRDLLIQTIENCGF 141 (343)
T ss_dssp --------------CHHHHHHHHGGGCSSCCS--EEEEEEETTGGGSHHHHHHHHHHHHTTE
T ss_pred hhcCCcCCccCccchHHHHHHHHHHHhcCCCC--EEEEeCCccccCHHHHHHHHHHHHHCCC
Confidence 0 111 222 2455555554 4 54 334444432 3356667777776665
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.087 Score=42.66 Aligned_cols=84 Identities=18% Similarity=0.175 Sum_probs=55.2
Q ss_pred hcccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCc--------EEEcCCCCCCCCCCceeeEEcccchh
Q 028410 90 GKSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPL--------VSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~--------~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
....++++.+||-+|+|. |..+..+++ .|. +|++++ +++..+ ...-|.+++ .+.+|+++...-.
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v---~~g~Dvv~d~~g~- 209 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKRGVRHLYREPSQV---TQKYFAIFDAVNS- 209 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHHTEEEEESSGGGC---CSCEEEEECC----
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHcCCCEEEcCHHHh---CCCccEEEECCCc-
Confidence 556678999999999953 667777777 576 999999 877543 111131122 5679999863211
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
..+.+..+.|+|||+++.+.
T Consensus 210 -----~~~~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 210 -----QNAAALVPSLKANGHIICIQ 229 (315)
T ss_dssp ---------TTGGGEEEEEEEEEEC
T ss_pred -----hhHHHHHHHhcCCCEEEEEe
Confidence 12356789999999987773
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.10 E-value=0.059 Score=44.82 Aligned_cols=91 Identities=14% Similarity=0.146 Sum_probs=58.8
Q ss_pred HHhcccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCC--CC-------CCCCce
Q 028410 88 LQGKSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHN--LP-------FFDEAF 149 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~--~~-------~~~~~f 149 (209)
+.....++++.+||-+|+|. |..+..+++ .|..+|+++|.+++..+. ...|..+ .. ..++.+
T Consensus 184 l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~ 263 (374)
T 1cdo_A 184 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGV 263 (374)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCC
Confidence 33445678899999999764 566666776 575589999998874431 1122221 01 112368
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccC-cEEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIG-GVCMVL 183 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~Lkpg-G~lil~ 183 (209)
|+++...- ....+....+.|+|| |+++++
T Consensus 264 D~vid~~g-----~~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 264 DFSLECVG-----NVGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp SEEEECSC-----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCC-----CHHHHHHHHHHhhcCCcEEEEE
Confidence 88876321 134578889999999 997765
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.15 Score=42.37 Aligned_cols=92 Identities=15% Similarity=0.203 Sum_probs=60.1
Q ss_pred HHhcccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCC--CCC-------CCCCce
Q 028410 88 LQGKSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPH--NLP-------FFDEAF 149 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~--~~~-------~~~~~f 149 (209)
+.....++++.+||-+|+|. |..+..+++ .|..+|+++|.+++..++ ...|.. +.. ..++.+
T Consensus 185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~ 264 (378)
T 3uko_A 185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGV 264 (378)
T ss_dssp HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCC
Confidence 34455678999999999863 666666776 476689999999874431 112221 111 112368
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccC-cEEEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIG-GVCMVLM 184 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~Lkpg-G~lil~~ 184 (209)
|+++...- ....+....+.|++| |+++++-
T Consensus 265 D~vid~~g-----~~~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 265 DYSFECIG-----NVSVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp SEEEECSC-----CHHHHHHHHHTBCTTTCEEEECS
T ss_pred CEEEECCC-----CHHHHHHHHHHhhccCCEEEEEc
Confidence 98876321 234678899999997 9977653
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.14 Score=41.91 Aligned_cols=91 Identities=13% Similarity=0.082 Sum_probs=58.7
Q ss_pred HHHhcccCCCCCeEEEEcCC--CChhHHHHHh-cCCceEEEecCCCCCCcEE-------EcCCCCCC--------CCCCc
Q 028410 87 HLQGKSLLFNHSKVLCVSAG--AGHEVMAFNS-IGVADVTGVELMDSLPLVS-------RADPHNLP--------FFDEA 148 (209)
Q Consensus 87 ~l~~~~~~~~~~~iLDiGcG--~G~~~~~la~-~~~~~v~~vD~s~~~~~~~-------~~d~~~~~--------~~~~~ 148 (209)
.+.....++++.+||-+|+| .|..+..+++ .|. +|+++|.+++..+.. ..|..+.. .....
T Consensus 135 ~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g 213 (340)
T 3gms_A 135 TCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIG 213 (340)
T ss_dssp HHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSC
T ss_pred HHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCC
Confidence 34455677899999999987 4667777776 576 999999988754411 11222211 12347
Q ss_pred eeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 149 FDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 149 fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+|+++.+.-.. ...+..+.|+|||+++.+-
T Consensus 214 ~Dvvid~~g~~------~~~~~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 214 ADAAIDSIGGP------DGNELAFSLRPNGHFLTIG 243 (340)
T ss_dssp EEEEEESSCHH------HHHHHHHTEEEEEEEEECC
T ss_pred CcEEEECCCCh------hHHHHHHHhcCCCEEEEEe
Confidence 99998742211 1234458999999987664
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.00 E-value=0.066 Score=43.94 Aligned_cols=73 Identities=16% Similarity=0.253 Sum_probs=48.8
Q ss_pred CcEEEcCCCC-CC-CCCCceeeEEccc---ch-----------hhh-CHHHHHHHHHHhcccCcEEEEEEecC--C----
Q 028410 132 PLVSRADPHN-LP-FFDEAFDVAFTAH---LA-----------EAL-FPSRFVGEMERTVKIGGVCMVLMEEC--A---- 188 (209)
Q Consensus 132 ~~~~~~d~~~-~~-~~~~~fD~i~~~~---~~-----------~~~-~~~~~l~~~~r~LkpgG~lil~~~~~--~---- 188 (209)
..++++|..+ +. +++++||+|+++- .. .+. .....+.++.++|||||.+++.+... .
T Consensus 15 ~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~~ 94 (323)
T 1boo_A 15 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPA 94 (323)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEEE
T ss_pred ceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCCcc
Confidence 3466777654 32 5678899999861 11 122 35788899999999999998887654 1
Q ss_pred --cccHHHHHHHhccccc
Q 028410 189 --GREIKQIVELFRTSSF 204 (209)
Q Consensus 189 --~~~~~~~~~l~~~~~~ 204 (209)
....+.+.++++..||
T Consensus 95 ~~~~~~~~i~~~~~~~Gf 112 (323)
T 1boo_A 95 RSIYNFRVLIRMIDEVGF 112 (323)
T ss_dssp ECCHHHHHHHHHHHTTCC
T ss_pred cccchHHHHHHHHHhCCC
Confidence 1235566666776665
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=93.89 E-value=0.07 Score=44.38 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=58.6
Q ss_pred HHhcccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcEE-------EcCCCC--CC-------CCCCce
Q 028410 88 LQGKSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLVS-------RADPHN--LP-------FFDEAF 149 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~~-------~~d~~~--~~-------~~~~~f 149 (209)
+.....++++.+||-+|+|. |..+..+++ .|..+|+++|.+++..+.. ..|..+ .. ..++.+
T Consensus 183 l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~ 262 (374)
T 2jhf_A 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGV 262 (374)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCC
Confidence 33445678999999999764 566666666 5755899999888744311 122221 00 112368
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccC-cEEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIG-GVCMVL 183 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~Lkpg-G~lil~ 183 (209)
|+|+...- ....+.+..+.|++| |+++++
T Consensus 263 D~vid~~g-----~~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 263 DFSFEVIG-----RLDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp SEEEECSC-----CHHHHHHHHHHBCTTTCEEEEC
T ss_pred cEEEECCC-----CHHHHHHHHHHhhcCCcEEEEe
Confidence 88876321 134578889999999 997665
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=93.83 E-value=0.062 Score=44.68 Aligned_cols=92 Identities=16% Similarity=0.133 Sum_probs=59.3
Q ss_pred HHhcccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCC--CC-------CCCCce
Q 028410 88 LQGKSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHN--LP-------FFDEAF 149 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~--~~-------~~~~~f 149 (209)
+.....++++.+||-+|+|. |..+..+++ .|..+|+++|.+++..++ ...|..+ .. ..++.+
T Consensus 183 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~ 262 (373)
T 1p0f_A 183 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGV 262 (373)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence 33445678999999999864 566666676 476589999988874431 1112211 00 112368
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccC-cEEEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIG-GVCMVLM 184 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~Lkpg-G~lil~~ 184 (209)
|+|+...- ....+.+..+.|++| |+++++-
T Consensus 263 Dvvid~~g-----~~~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 263 DYAVECAG-----RIETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp SEEEECSC-----CHHHHHHHHHTBCTTTCEEEECC
T ss_pred CEEEECCC-----CHHHHHHHHHHHhcCCCEEEEEc
Confidence 98876321 134578889999999 9977653
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.034 Score=45.66 Aligned_cols=87 Identities=13% Similarity=0.134 Sum_probs=58.3
Q ss_pred cccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCCC------CCCceeeEEcc
Q 028410 91 KSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLPF------FDEAFDVAFTA 155 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~~------~~~~fD~i~~~ 155 (209)
...++++.+||-.|+|. |..+..+++ .|. +|+++|.+++..+. ...|..+..+ ..+.+|+++..
T Consensus 161 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~ 239 (340)
T 3s2e_A 161 VTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVT 239 (340)
T ss_dssp TTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEES
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEe
Confidence 44678999999999875 788888887 576 99999998764331 1112222111 01357888753
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
.. ....+....+.|+|||+++++
T Consensus 240 ~g-----~~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 240 AV-----SPKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp SC-----CHHHHHHHHHHEEEEEEEEEC
T ss_pred CC-----CHHHHHHHHHHhccCCEEEEe
Confidence 21 245678899999999998765
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.074 Score=44.28 Aligned_cols=91 Identities=12% Similarity=0.187 Sum_probs=58.6
Q ss_pred HHhcccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcEE-------EcCCCC--CC-------CCCCce
Q 028410 88 LQGKSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLVS-------RADPHN--LP-------FFDEAF 149 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~~-------~~d~~~--~~-------~~~~~f 149 (209)
+.....++++.+||-+|+|. |..+..+++ .|..+|+++|.+++..++. ..|..+ .. ..++.+
T Consensus 187 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~ 266 (376)
T 1e3i_A 187 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGV 266 (376)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCc
Confidence 33445678999999999763 566666666 5765899999988744321 112221 00 012368
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccC-cEEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIG-GVCMVL 183 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~Lkpg-G~lil~ 183 (209)
|+|+...- ....+.+..+.|++| |+++++
T Consensus 267 Dvvid~~G-----~~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 267 DYSLDCAG-----TAQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp SEEEESSC-----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred cEEEECCC-----CHHHHHHHHHHhhcCCCEEEEE
Confidence 88876321 134678899999999 997765
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=93.67 E-value=0.036 Score=45.79 Aligned_cols=89 Identities=12% Similarity=0.001 Sum_probs=58.3
Q ss_pred hcccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC--------CCCCceeeE
Q 028410 90 GKSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAFDVA 152 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~i 152 (209)
....++++.+||-+|+|. |..+..+++ .|..+|+++|.+++..+. ...|..+.. .....+|++
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v 239 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKV 239 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEE
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEE
Confidence 345678999999999875 666777777 476689999988763321 111221111 123469999
Q ss_pred EcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
+...- ....+.+..+.|+|||+++.+
T Consensus 240 ~d~~g-----~~~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 240 VIAGG-----DVHTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp EECSS-----CTTHHHHHHHHEEEEEEEEEC
T ss_pred EECCC-----ChHHHHHHHHHHhcCCEEEEe
Confidence 86321 124578889999999998765
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.038 Score=46.45 Aligned_cols=58 Identities=19% Similarity=0.117 Sum_probs=46.7
Q ss_pred CeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------cEEEcCCCCCCC--------CCCceeeEEcc
Q 028410 98 SKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------LVSRADPHNLPF--------FDEAFDVAFTA 155 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------~~~~~d~~~~~~--------~~~~fD~i~~~ 155 (209)
.+++|+-||.|.++..+.+.|...+.++|+++.+. .++.+|+.++.. ....+|+++..
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~gg 78 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGG 78 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEEC
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEec
Confidence 68999999999999999888887788999998743 366788877642 34679999974
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=93.57 E-value=0.089 Score=39.43 Aligned_cols=88 Identities=18% Similarity=0.151 Sum_probs=55.1
Q ss_pred hcccCCCCCeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC--------CCCCceee
Q 028410 90 GKSLLFNHSKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAFDV 151 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~ 151 (209)
....++++.+||..|+ |.|.....++. .|. +|+++|.+++..+. ...|..+.. .....+|+
T Consensus 32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~ 110 (198)
T 1pqw_A 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDV 110 (198)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEE
T ss_pred HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeE
Confidence 3346688999999995 33444444444 575 89999987653321 112332211 11246999
Q ss_pred EEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 152 i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
++.+.- ...+.+..+.|+|||+++.+-
T Consensus 111 vi~~~g------~~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 111 VLNSLA------GEAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp EEECCC------THHHHHHHHTEEEEEEEEECS
T ss_pred EEECCc------hHHHHHHHHHhccCCEEEEEc
Confidence 987431 245788899999999977653
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=93.51 E-value=0.1 Score=43.48 Aligned_cols=47 Identities=21% Similarity=0.192 Sum_probs=36.8
Q ss_pred CCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCC------------CCcEEEcCCCCC
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS------------LPLVSRADPHNL 142 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~------------~~~~~~~d~~~~ 142 (209)
++..|||||.|.|.++..|.+. ...+|+++|+++. .++++.+|+.++
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW 117 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccch
Confidence 4689999999999999999984 3358999999865 234667777543
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=93.28 E-value=0.067 Score=44.43 Aligned_cols=92 Identities=18% Similarity=0.221 Sum_probs=59.0
Q ss_pred HHhcccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCC--CC-------CCCCce
Q 028410 88 LQGKSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHN--LP-------FFDEAF 149 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~--~~-------~~~~~f 149 (209)
+.....++++.+||-+|+|. |..+..+++ .|..+|+++|.+++..+. ...|..+ .. ..++.+
T Consensus 182 l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~ 261 (373)
T 2fzw_A 182 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGV 261 (373)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCC
Confidence 33445678999999999764 566666666 476589999988875431 1112221 00 112368
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccC-cEEEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIG-GVCMVLM 184 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~Lkpg-G~lil~~ 184 (209)
|+++...- ....+.+..+.|+|| |+++++-
T Consensus 262 D~vid~~g-----~~~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 262 DYSFECIG-----NVKVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp SEEEECSC-----CHHHHHHHHHTBCTTTCEEEECS
T ss_pred CEEEECCC-----cHHHHHHHHHhhccCCcEEEEEe
Confidence 98876321 134578889999999 9977653
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.04 Score=45.60 Aligned_cols=40 Identities=8% Similarity=-0.084 Sum_probs=35.1
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP 132 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~ 132 (209)
..+++..++|..||.|..+..+++. +.++|+|+|.++.++
T Consensus 54 ~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al 95 (347)
T 3tka_A 54 NIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAI 95 (347)
T ss_dssp CCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHH
T ss_pred CCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHH
Confidence 5688999999999999999999884 467999999998754
|
| >3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.06 Score=42.89 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=44.6
Q ss_pred CceeeEEcc----cchhhh--------CHHHHHHHHHHhcccCcEEEEEEecC-CcccHHHHHHHhcccccccccC
Q 028410 147 EAFDVAFTA----HLAEAL--------FPSRFVGEMERTVKIGGVCMVLMEEC-AGREIKQIVELFRTSSFTEAVR 209 (209)
Q Consensus 147 ~~fD~i~~~----~~~~~~--------~~~~~l~~~~r~LkpgG~lil~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 209 (209)
+.||+||.+ +-.||- ...-+-....+.|||||.+++..+.. +..+.+.+..+.++.+++++.|
T Consensus 210 grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGyADR~SE~vV~alARkF~~~rv~~ 285 (324)
T 3trk_A 210 GRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSERVICVLGRKFRSSRALK 285 (324)
T ss_dssp CCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEEEEEC
T ss_pred CceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeecccccchHHHHHHHHhhheeeeeec
Confidence 899999996 111111 12334467789999999988776664 6677888888888888877654
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=93.06 E-value=0.071 Score=44.22 Aligned_cols=91 Identities=14% Similarity=0.006 Sum_probs=59.0
Q ss_pred HHHhcccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCc---------EEEcCCCCCC------CCCCce
Q 028410 87 HLQGKSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPL---------VSRADPHNLP------FFDEAF 149 (209)
Q Consensus 87 ~l~~~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~~d~~~~~------~~~~~f 149 (209)
.+.....++++.+||-+|+|. |..+..+++ .|. +|+++|.+++..+ ++..+..++. .....+
T Consensus 180 al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~ 258 (363)
T 3uog_A 180 ALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGA 258 (363)
T ss_dssp HHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCE
T ss_pred HHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCc
Confidence 333456678999999999775 666666776 576 9999998866332 2221111110 123479
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
|+++...- ...+....+.|+|||+++++-
T Consensus 259 D~vid~~g------~~~~~~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 259 DHILEIAG------GAGLGQSLKAVAPDGRISVIG 287 (363)
T ss_dssp EEEEEETT------SSCHHHHHHHEEEEEEEEEEC
T ss_pred eEEEECCC------hHHHHHHHHHhhcCCEEEEEe
Confidence 99987421 124677889999999987764
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=92.77 E-value=0.066 Score=43.27 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=37.9
Q ss_pred CcEEEcCCCC-C-CCCCCceeeEEcc--cch--h----------------hh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 132 PLVSRADPHN-L-PFFDEAFDVAFTA--HLA--E----------------AL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 132 ~~~~~~d~~~-~-~~~~~~fD~i~~~--~~~--~----------------~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
..++++|..+ + .+++++||+|+++ +.. . .+ ....++.++.++|||||.+++.+..
T Consensus 22 ~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d 99 (297)
T 2zig_A 22 HRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD 99 (297)
T ss_dssp EEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence 4567777765 2 2467889999986 110 0 11 2356788999999999999888764
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=92.63 E-value=0.14 Score=46.15 Aligned_cols=104 Identities=16% Similarity=0.130 Sum_probs=66.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc--------C-----CceEEEecCCCCCC-----------------------------
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI--------G-----VADVTGVELMDSLP----------------------------- 132 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~--------~-----~~~v~~vD~s~~~~----------------------------- 132 (209)
++..+|+|+|-|+|.....+.+. + ...++++|..|...
T Consensus 57 ~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (689)
T 3pvc_A 57 QQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA 136 (689)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred CCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence 45679999999999877766441 1 13689999866311
Q ss_pred --------------cEEEcCCCC-CC-CC---CCceeeEEcccchhhhCH----HHHHHHHHHhcccCcEEEEEEecCCc
Q 028410 133 --------------LVSRADPHN-LP-FF---DEAFDVAFTAHLAEALFP----SRFVGEMERTVKIGGVCMVLMEECAG 189 (209)
Q Consensus 133 --------------~~~~~d~~~-~~-~~---~~~fD~i~~~~~~~~~~~----~~~l~~~~r~LkpgG~lil~~~~~~~ 189 (209)
+++.+|+.+ ++ +. +..+|+++...+.-..+| .+++..+.++++|||. +++....
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~--~~t~~~~- 213 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGT--FSTFTAA- 213 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEE--EEESCCC-
T ss_pred CceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCE--EEeccCc-
Confidence 134455433 22 21 468999998654332223 8899999999999998 4444332
Q ss_pred ccHHHHHHHhccccc
Q 028410 190 REIKQIVELFRTSSF 204 (209)
Q Consensus 190 ~~~~~~~~l~~~~~~ 204 (209)
..+.+.+.+.+|
T Consensus 214 ---~~vr~~l~~aGf 225 (689)
T 3pvc_A 214 ---GFVRRGLQQAGF 225 (689)
T ss_dssp ---HHHHHHHHHTTC
T ss_pred ---HHHHHHHHhCCe
Confidence 355666666666
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=0.65 Score=36.85 Aligned_cols=109 Identities=8% Similarity=0.079 Sum_probs=64.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc--------CCceEEEecCCCCCCc---------------------------------
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI--------GVADVTGVELMDSLPL--------------------------------- 133 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~--------~~~~v~~vD~s~~~~~--------------------------------- 133 (209)
.-+..|+|+|+-.|..+..++.. ...++++.|--+.+.+
T Consensus 68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~ 147 (257)
T 3tos_A 68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH 147 (257)
T ss_dssp TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence 56789999999999988887651 2469999995444332
Q ss_pred --------------EEEcCCCC-CC-----CCCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecC--Cccc
Q 028410 134 --------------VSRADPHN-LP-----FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEEC--AGRE 191 (209)
Q Consensus 134 --------------~~~~d~~~-~~-----~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~--~~~~ 191 (209)
++.|++.+ +| .+..+||+++... ..+......+..+...|+|||.+++--... -...
T Consensus 148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~-D~Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~w~G~ 226 (257)
T 3tos_A 148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL-DLYEPTKAVLEAIRPYLTKGSIVAFDELDNPKWPGE 226 (257)
T ss_dssp HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC-CCHHHHHHHHHHHGGGEEEEEEEEESSTTCTTCTHH
T ss_pred hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC-cccchHHHHHHHHHHHhCCCcEEEEcCCCCCCChHH
Confidence 12222211 01 1234677776632 112223567888999999999855443311 0123
Q ss_pred HHHHHHHhccccc
Q 028410 192 IKQIVELFRTSSF 204 (209)
Q Consensus 192 ~~~~~~l~~~~~~ 204 (209)
.+.+.+++...++
T Consensus 227 ~~A~~ef~~~~~~ 239 (257)
T 3tos_A 227 NIAMRKVLGLDHA 239 (257)
T ss_dssp HHHHHHHTCTTSS
T ss_pred HHHHHHHHhhCCC
Confidence 4445556665544
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=92.20 E-value=0.058 Score=44.64 Aligned_cols=90 Identities=18% Similarity=0.140 Sum_probs=57.8
Q ss_pred hcccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcEEE--cC------CCCC---C--------CCCCc
Q 028410 90 GKSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLVSR--AD------PHNL---P--------FFDEA 148 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~~~--~d------~~~~---~--------~~~~~ 148 (209)
....++++.+||-+|+|. |..+..+++ .|...|+++|.+++..++.. ++ ..+. . .....
T Consensus 173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g 252 (363)
T 3m6i_A 173 QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIE 252 (363)
T ss_dssp HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCC
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCC
Confidence 344678999999999865 667777777 57656999998876433111 10 0000 0 12346
Q ss_pred eeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 149 FDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 149 fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+|+++...- ....+....+.|++||+++++-
T Consensus 253 ~Dvvid~~g-----~~~~~~~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 253 PAVALECTG-----VESSIAAAIWAVKFGGKVFVIG 283 (363)
T ss_dssp CSEEEECSC-----CHHHHHHHHHHSCTTCEEEECC
T ss_pred CCEEEECCC-----ChHHHHHHHHHhcCCCEEEEEc
Confidence 888876321 2345788899999999987663
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=92.09 E-value=0.082 Score=43.42 Aligned_cols=88 Identities=17% Similarity=0.167 Sum_probs=57.4
Q ss_pred ccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcEE-------EcCCCC-CC------CCCCceeeEEcc
Q 028410 92 SLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLVS-------RADPHN-LP------FFDEAFDVAFTA 155 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~~-------~~d~~~-~~------~~~~~fD~i~~~ 155 (209)
..++++.+||-+|+|. |..+..+++ .|..+|+++|.+++..++. ..|..+ .. .....+|+++..
T Consensus 167 ~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~ 246 (345)
T 3jv7_A 167 PLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDF 246 (345)
T ss_dssp GGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEES
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEEC
Confidence 3568999999999875 677777777 4446999999987643311 111111 10 012368888763
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
. -....+....+.|+|||+++++-
T Consensus 247 ~-----G~~~~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 247 V-----GAQSTIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp S-----CCHHHHHHHHHHEEEEEEEEECS
T ss_pred C-----CCHHHHHHHHHHHhcCCEEEEEC
Confidence 2 12346788999999999987663
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=92.00 E-value=0.22 Score=41.02 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=56.1
Q ss_pred cCCCC------CeEEEEcCCC-ChhH-HHHH-h-cCCceEEEecCCCC---CCcE-------EEcCCCCCCCC-----CC
Q 028410 93 LLFNH------SKVLCVSAGA-GHEV-MAFN-S-IGVADVTGVELMDS---LPLV-------SRADPHNLPFF-----DE 147 (209)
Q Consensus 93 ~~~~~------~~iLDiGcG~-G~~~-~~la-~-~~~~~v~~vD~s~~---~~~~-------~~~d~~~~~~~-----~~ 147 (209)
.++++ .+||-+|+|. |..+ ..++ + .|..+|+++|.+++ ..++ .. |..+..+. ++
T Consensus 163 ~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v-~~~~~~~~~i~~~~g 241 (357)
T 2b5w_A 163 YASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV-DSRQTPVEDVPDVYE 241 (357)
T ss_dssp HHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE-ETTTSCGGGHHHHSC
T ss_pred CCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc-CCCccCHHHHHHhCC
Confidence 44677 9999999853 5666 7777 6 57645999999876 3331 12 33322111 13
Q ss_pred ceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 148 AFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 148 ~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
.+|+|+...- ....+.+..+.|+|||+++.+-
T Consensus 242 g~Dvvid~~g-----~~~~~~~~~~~l~~~G~iv~~g 273 (357)
T 2b5w_A 242 QMDFIYEATG-----FPKHAIQSVQALAPNGVGALLG 273 (357)
T ss_dssp CEEEEEECSC-----CHHHHHHHHHHEEEEEEEEECC
T ss_pred CCCEEEECCC-----ChHHHHHHHHHHhcCCEEEEEe
Confidence 6898876321 1345788899999999977654
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.73 E-value=0.072 Score=43.91 Aligned_cols=88 Identities=14% Similarity=0.025 Sum_probs=56.3
Q ss_pred cccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCC-CCC--------C---CCce
Q 028410 91 KSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHN-LPF--------F---DEAF 149 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~-~~~--------~---~~~f 149 (209)
...++++.+||-+|+|. |..+..+++ .|. +|+++|.+++..+. ...|..+ ..+ . ...+
T Consensus 163 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~ 241 (352)
T 1e3j_A 163 RAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLP 241 (352)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCC
Confidence 34568999999999864 566666776 576 69999988763321 1112221 111 1 2468
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
|+++...- ....+....+.|+|||+++.+-
T Consensus 242 D~vid~~g-----~~~~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 242 NVTIDCSG-----NEKCITIGINITRTGGTLMLVG 271 (352)
T ss_dssp SEEEECSC-----CHHHHHHHHHHSCTTCEEEECS
T ss_pred CEEEECCC-----CHHHHHHHHHHHhcCCEEEEEe
Confidence 98876321 1345778899999999987653
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=91.69 E-value=0.066 Score=43.77 Aligned_cols=93 Identities=14% Similarity=0.040 Sum_probs=59.9
Q ss_pred HHHHHhcccCCCCCeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCcEE--------EcCCCCCC-------CCC
Q 028410 85 FKHLQGKSLLFNHSKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPLVS--------RADPHNLP-------FFD 146 (209)
Q Consensus 85 ~~~l~~~~~~~~~~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~~~--------~~d~~~~~-------~~~ 146 (209)
+..+.....++++.+||-.|+ |.|..+..+++ .|. +|+++|.+++..+.. ..|..+.. ...
T Consensus 138 ~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 216 (336)
T 4b7c_A 138 YFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECP 216 (336)
T ss_dssp HHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCT
T ss_pred HHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcC
Confidence 334445567799999999998 34566666666 576 999999886533211 12222211 112
Q ss_pred CceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 147 EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 147 ~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+.+|+++.+.- ...+....+.|++||+++++-
T Consensus 217 ~~~d~vi~~~g------~~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 217 KGIDVFFDNVG------GEILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp TCEEEEEESSC------HHHHHHHHTTEEEEEEEEECC
T ss_pred CCceEEEECCC------cchHHHHHHHHhhCCEEEEEe
Confidence 46999887421 136788899999999987653
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=91.64 E-value=0.48 Score=39.79 Aligned_cols=88 Identities=15% Similarity=0.128 Sum_probs=54.4
Q ss_pred cCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC--------CCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~i~~~ 155 (209)
.++++.+||=+|+|. |..+..+++ .|..+|+++|.+++..++ ...|..+.. .....+|+++-.
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~ 289 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEA 289 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEEC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEEC
Confidence 578999999999864 556666666 576699999988764331 112222211 122368998863
Q ss_pred cchhhhCHHHHHHHHHHhc----ccCcEEEEEE
Q 028410 156 HLAEALFPSRFVGEMERTV----KIGGVCMVLM 184 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~L----kpgG~lil~~ 184 (209)
.- .+...+..+.+.| ++||+++++-
T Consensus 290 ~g----~~~~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 290 TG----VPQLVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp SS----CHHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred CC----CcHHHHHHHHHHHHhccCCCcEEEEeC
Confidence 21 2323445555555 9999987763
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=91.12 E-value=0.16 Score=41.64 Aligned_cols=86 Identities=15% Similarity=0.225 Sum_probs=55.6
Q ss_pred cCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCCCCC------CceeeEEcccc
Q 028410 93 LLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLPFFD------EAFDVAFTAHL 157 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~~~~------~~fD~i~~~~~ 157 (209)
.++++.+||-+|+|. |..+..+++ .|. +|+++|.++...+. ...|..+..+.+ +.+|+++...-
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g 239 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV 239 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCC
Confidence 568899999999863 566666666 576 99999988763321 112332211100 36888876321
Q ss_pred hhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 158 AEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 158 ~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
....+.+..+.|++||+++.+-
T Consensus 240 -----~~~~~~~~~~~l~~~G~~v~~g 261 (339)
T 1rjw_A 240 -----SKPAFQSAYNSIRRGGACVLVG 261 (339)
T ss_dssp -----CHHHHHHHHHHEEEEEEEEECC
T ss_pred -----CHHHHHHHHHHhhcCCEEEEec
Confidence 1345788899999999976653
|
| >4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus} | Back alignment and structure |
|---|
Probab=91.10 E-value=0.2 Score=43.98 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=45.1
Q ss_pred CCceeeEEcc----cchhhh--------CHHHHHHHHHHhcccCcEEEEEEecC-CcccHHHHHHHhcccccccccC
Q 028410 146 DEAFDVAFTA----HLAEAL--------FPSRFVGEMERTVKIGGVCMVLMEEC-AGREIKQIVELFRTSSFTEAVR 209 (209)
Q Consensus 146 ~~~fD~i~~~----~~~~~~--------~~~~~l~~~~r~LkpgG~lil~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 209 (209)
++.||+||.+ +-.||- -..-+-....+.|||||.+++..+.. +..+.+.+..+-++.+++++.|
T Consensus 219 ~~ryDlvfvn~~t~yr~HHyqQCeDHa~~l~ml~~~al~~l~pGGt~v~~~YGyADr~sE~vv~alaRkF~~~rv~~ 295 (670)
T 4gua_A 219 QARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAAR 295 (670)
T ss_dssp CCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCSHHHHHHHHHHHHTEEEEEEEC
T ss_pred CCcccEEEEecCCCcccchHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEeeccccchHHHHHHHHhheeeeeeeC
Confidence 5799999996 111211 12334477889999999988776664 6677788888888888877653
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=91.09 E-value=0.17 Score=41.42 Aligned_cols=87 Identities=14% Similarity=0.068 Sum_probs=54.8
Q ss_pred cccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcEE------EcCCCCCCC-------CCCceeeEEcc
Q 028410 91 KSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLVS------RADPHNLPF-------FDEAFDVAFTA 155 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~~------~~d~~~~~~-------~~~~fD~i~~~ 155 (209)
...+ ++.+||-+|+|. |..+..+++ .|..+|+++|.+++..+.. ..|..+..+ ....+|+++..
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~la~~v~~~~~~~~~~~~~~~~~~g~D~vid~ 238 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVTGSGVEVLLEF 238 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTTCSEEECTTTSCHHHHHHHHHSSCEEEEEEC
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhHHhccCcCccCHHHHHHHhcCCCCCEEEEC
Confidence 3455 899999999853 556666666 5655899999886533221 122221111 02358888763
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
.- ....+++..+.|++||+++.+
T Consensus 239 ~g-----~~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 239 SG-----NEAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp SC-----CHHHHHHHHHHEEEEEEEEEC
T ss_pred CC-----CHHHHHHHHHHHhcCCEEEEE
Confidence 21 134578889999999997665
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=91.05 E-value=0.3 Score=39.99 Aligned_cols=91 Identities=16% Similarity=0.137 Sum_probs=58.6
Q ss_pred HHHHhcccCCCCCeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCc---------EEEcCCCCCC------CCCC
Q 028410 86 KHLQGKSLLFNHSKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPL---------VSRADPHNLP------FFDE 147 (209)
Q Consensus 86 ~~l~~~~~~~~~~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~~d~~~~~------~~~~ 147 (209)
..+.....++++.+||-.|+ |.|..+..+++ .|. +|++++.+++..+ ++..+ .++. ....
T Consensus 149 ~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~v~~~~-~~~~~~v~~~~~~~ 226 (342)
T 4eye_A 149 FAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVGADIVLPLE-EGWAKAVREATGGA 226 (342)
T ss_dssp HHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEESS-TTHHHHHHHHTTTS
T ss_pred HHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEecCc-hhHHHHHHHHhCCC
Confidence 33435566789999999997 34666666766 576 9999998876433 22222 2110 1223
Q ss_pred ceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 148 AFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 148 ~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
.+|+++.+.-. ..+....+.|++||+++++-
T Consensus 227 g~Dvvid~~g~------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 227 GVDMVVDPIGG------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp CEEEEEESCC--------CHHHHHHTEEEEEEEEEC-
T ss_pred CceEEEECCch------hHHHHHHHhhcCCCEEEEEE
Confidence 69999874211 24678889999999987663
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.05 E-value=0.21 Score=41.52 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=54.6
Q ss_pred cCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcEE-------EcCCCCC----CCCCCceeeEEcccchh
Q 028410 93 LLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLVS-------RADPHNL----PFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~~-------~~d~~~~----~~~~~~fD~i~~~~~~~ 159 (209)
.++++.+||-+|+|. |..+..+++ .|. +|+++|.+++..+.. ..|..+. .. .+.+|+|+...-.
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~-~~g~Dvvid~~g~- 267 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVNSRNADEMAAH-LKSFDFILNTVAA- 267 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTT-TTCEEEEEECCSS-
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHh-hcCCCEEEECCCC-
Confidence 568899999999874 666677776 576 799999887744311 1111110 01 1469999864211
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEE
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
...+.+..+.|+|||+++.+
T Consensus 268 ----~~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 268 ----PHNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp ----CCCHHHHHTTEEEEEEEEEC
T ss_pred ----HHHHHHHHHHhccCCEEEEe
Confidence 12356788999999997655
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=90.88 E-value=0.25 Score=41.86 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcCCCChhHHHHH-h-cC-CceEEEecCCCC
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFN-S-IG-VADVTGVELMDS 130 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la-~-~~-~~~v~~vD~s~~ 130 (209)
++++..++|+||+.|..+..++ . .+ .++|+++|+++.
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~ 263 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRI 263 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHH
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHH
Confidence 3788999999999999999988 4 33 379999999987
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=90.75 E-value=0.3 Score=40.28 Aligned_cols=106 Identities=11% Similarity=0.065 Sum_probs=66.6
Q ss_pred CCeEEEEcCCCChhHHHHHhcCC--ceEEEecCCCCCCc----------EEEcCCCCCCC---CCCceeeEEcc------
Q 028410 97 HSKVLCVSAGAGHEVMAFNSIGV--ADVTGVELMDSLPL----------VSRADPHNLPF---FDEAFDVAFTA------ 155 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~~~--~~v~~vD~s~~~~~----------~~~~d~~~~~~---~~~~fD~i~~~------ 155 (209)
..+++|+-||.|.....+.+.|. ..+.++|+++.+.+ +..+|+.++.. +...+|+++..
T Consensus 3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~f 82 (333)
T 4h0n_A 3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPF 82 (333)
T ss_dssp CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCS
T ss_pred CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcch
Confidence 35899999999999998887664 56889999987432 56677777642 23368999864
Q ss_pred ---cchhhh-CHH-HHHHHHHHhc---c-cCcEEEEEEecCCc---ccHHHHHHHhccccc
Q 028410 156 ---HLAEAL-FPS-RFVGEMERTV---K-IGGVCMVLMEECAG---REIKQIVELFRTSSF 204 (209)
Q Consensus 156 ---~~~~~~-~~~-~~l~~~~r~L---k-pgG~lil~~~~~~~---~~~~~~~~l~~~~~~ 204 (209)
..-... |+. .++.++.+++ + | .+++..+..+- ...+.+.+.|+..|+
T Consensus 83 S~ag~~~~~~d~r~~L~~~~~r~i~~~~~P--~~~vlENV~gl~~~~~~~~i~~~l~~~GY 141 (333)
T 4h0n_A 83 TRNGKYLDDNDPRTNSFLYLIGILDQLDNV--DYILMENVKGFENSTVRNLFIDKLKECNF 141 (333)
T ss_dssp EETTEECCTTCTTSCCHHHHHHHGGGCTTC--CEEEEEECTTGGGSHHHHHHHHHHHHTTE
T ss_pred hhhhhccCCcCcccccHHHHHHHHHHhcCC--CEEEEecchhhhhhhHHHHHHHHHHhCCC
Confidence 000111 222 3444444444 4 6 44566655543 235667777776665
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=90.71 E-value=0.11 Score=42.33 Aligned_cols=90 Identities=17% Similarity=0.080 Sum_probs=56.9
Q ss_pred HHhcccCCCCCeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCc-------EEEcCCCC-CC-------CCCCce
Q 028410 88 LQGKSLLFNHSKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPL-------VSRADPHN-LP-------FFDEAF 149 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~-------~~~~d~~~-~~-------~~~~~f 149 (209)
+.....++++.+||-.|+ |.|.....++. .|. +|+++|.+++..+ ....|..+ -. ...+.+
T Consensus 137 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~ 215 (333)
T 1v3u_A 137 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGY 215 (333)
T ss_dssp HHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCE
T ss_pred HHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCC
Confidence 334456788999999997 44555555555 576 9999998765322 11223332 11 112469
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
|+++.+.-. ..+.+..+.|+|||+++++-
T Consensus 216 d~vi~~~g~------~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 216 DCYFDNVGG------EFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp EEEEESSCH------HHHHHHHTTEEEEEEEEECC
T ss_pred eEEEECCCh------HHHHHHHHHHhcCCEEEEEe
Confidence 999874321 24788889999999987653
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.39 E-value=0.46 Score=39.09 Aligned_cols=91 Identities=13% Similarity=0.139 Sum_probs=56.8
Q ss_pred HHHhcccCCCCCeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC--------CCCCc
Q 028410 87 HLQGKSLLFNHSKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEA 148 (209)
Q Consensus 87 ~l~~~~~~~~~~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~ 148 (209)
.+.....++++.+||-.|+ |.|..+..+++ .|. +|+++|.+++..+. ...|..+.. .....
T Consensus 161 al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~ 239 (351)
T 1yb5_A 161 ALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKG 239 (351)
T ss_dssp HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTC
T ss_pred HHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCC
Confidence 3333456788999999997 34455555555 576 89999988653321 112222211 11236
Q ss_pred eeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 149 FDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 149 fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+|+++.+.- ...+.+..+.|+|||+++++-
T Consensus 240 ~D~vi~~~G------~~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 240 IDIIIEMLA------NVNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp EEEEEESCH------HHHHHHHHHHEEEEEEEEECC
T ss_pred cEEEEECCC------hHHHHHHHHhccCCCEEEEEe
Confidence 999987431 134677889999999977653
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=90.24 E-value=0.21 Score=41.00 Aligned_cols=88 Identities=18% Similarity=0.096 Sum_probs=56.1
Q ss_pred cccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCCC--------CCCceeeEE
Q 028410 91 KSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLPF--------FDEAFDVAF 153 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~~--------~~~~fD~i~ 153 (209)
...+ ++.+||-+|+|. |..+..+++ .|..+|+++|.+++..+. ...|..+..+ ....+|+++
T Consensus 163 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vi 241 (348)
T 2d8a_A 163 AGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFL 241 (348)
T ss_dssp TSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEE
T ss_pred hcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEE
Confidence 3455 899999999853 555666666 565589999988763321 1123222111 123689998
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
...- ....+.+..+.|++||+++.+-
T Consensus 242 d~~g-----~~~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 242 EFSG-----APKALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp ECSC-----CHHHHHHHHHHEEEEEEEEECC
T ss_pred ECCC-----CHHHHHHHHHHHhcCCEEEEEc
Confidence 7421 1345788899999999976653
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=90.04 E-value=0.25 Score=40.46 Aligned_cols=40 Identities=8% Similarity=-0.028 Sum_probs=34.6
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcE
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLV 134 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~ 134 (209)
..++..|||.-||+|..+.+..+.|. +.+|+|+++...+.
T Consensus 250 ~~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~ 289 (323)
T 1boo_A 250 TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAA 289 (323)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHH
Confidence 47899999999999999999888874 99999999875543
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=89.94 E-value=0.55 Score=42.16 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=36.3
Q ss_pred CCceeeEEcccchhhhCH----HHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 146 DEAFDVAFTAHLAEALFP----SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 146 ~~~fD~i~~~~~~~~~~~----~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+..||+++...+....+| .+++..+.+.++|||. +++.... ..+...+.+.+|
T Consensus 177 ~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~--~~t~~~~----~~vr~~L~~aGf 233 (676)
T 3ps9_A 177 NQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGT--LATFTSA----GFVRRGLQDAGF 233 (676)
T ss_dssp TTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEE--EEESCCC----HHHHHHHHHHTC
T ss_pred CCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCE--EEeccCc----HHHHHHHHhCCe
Confidence 467999998654433333 7899999999999998 4444432 345555666665
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.89 E-value=0.063 Score=44.89 Aligned_cols=88 Identities=17% Similarity=0.094 Sum_probs=55.0
Q ss_pred cc-CCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcEE-------EcCCC---CCC--------CCCCcee
Q 028410 92 SL-LFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLVS-------RADPH---NLP--------FFDEAFD 150 (209)
Q Consensus 92 ~~-~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~~-------~~d~~---~~~--------~~~~~fD 150 (209)
.. ++++.+||-+|+|. |..+..+++ .|..+|+++|.+++..+.. ..|.. +.. .....+|
T Consensus 190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~D 269 (380)
T 1vj0_A 190 YPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGAD 269 (380)
T ss_dssp CSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEE
T ss_pred cCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCCc
Confidence 35 68899999999652 556666666 4634999999887633211 11211 100 1123699
Q ss_pred eEEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 151 ~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+|+...- ....+.+..+.|+|||+++.+-
T Consensus 270 vvid~~g-----~~~~~~~~~~~l~~~G~iv~~G 298 (380)
T 1vj0_A 270 FILEATG-----DSRALLEGSELLRRGGFYSVAG 298 (380)
T ss_dssp EEEECSS-----CTTHHHHHHHHEEEEEEEEECC
T ss_pred EEEECCC-----CHHHHHHHHHHHhcCCEEEEEe
Confidence 9986321 1234678889999999976653
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.71 E-value=0.33 Score=38.25 Aligned_cols=51 Identities=16% Similarity=0.322 Sum_probs=31.8
Q ss_pred EEEcCCCC-C-CCCCCceeeEEcc---cch-----------hhh-CHHHHHHHHHHhcccCcEEEEEE
Q 028410 134 VSRADPHN-L-PFFDEAFDVAFTA---HLA-----------EAL-FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 134 ~~~~d~~~-~-~~~~~~fD~i~~~---~~~-----------~~~-~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
++++|..+ + .+++++||+|++. +.. .+. .....+.++.++|||||.+++..
T Consensus 7 l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 7 IHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp EEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 44555433 1 1345677887775 111 111 24677889999999999987775
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=89.45 E-value=0.31 Score=40.32 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=54.4
Q ss_pred CCCeEEEEc-CC-CChhHHHHHhc-CCceEEEecCCCCCCcE-------EEcCCCC-C-----CCCCCceeeEEcccchh
Q 028410 96 NHSKVLCVS-AG-AGHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHN-L-----PFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 96 ~~~~iLDiG-cG-~G~~~~~la~~-~~~~v~~vD~s~~~~~~-------~~~d~~~-~-----~~~~~~fD~i~~~~~~~ 159 (209)
++.+||=.| +| .|..+..+++. +..+|+++|.+++..++ ...|..+ + ....+.+|+++...
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~--- 247 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTT--- 247 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECS---
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECC---
Confidence 788999998 44 46777778874 44599999998753321 1112211 0 11235789887632
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEE
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
.....+.+..+.|+|||+++++
T Consensus 248 --g~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 248 --HTDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp --CHHHHHHHHHHHSCTTCEEEEC
T ss_pred --CchhhHHHHHHHhcCCCEEEEE
Confidence 1345678899999999998766
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=88.92 E-value=0.18 Score=40.56 Aligned_cols=82 Identities=16% Similarity=0.105 Sum_probs=54.0
Q ss_pred CCCCCeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCcEEE-------cCCCC-CCCCC--CceeeEEcccchhh
Q 028410 94 LFNHSKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPLVSR-------ADPHN-LPFFD--EAFDVAFTAHLAEA 160 (209)
Q Consensus 94 ~~~~~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~~~~-------~d~~~-~~~~~--~~fD~i~~~~~~~~ 160 (209)
++++.+||-.|+ |.|..+..+++ .|. +|+++|.+++..+... .|..+ ..+.+ +.+|+++. . ..
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~-g~- 198 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-V-RG- 198 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-C-SC-
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-C-CH-
Confidence 789999999997 34666666666 576 9999999877554211 11111 00000 46888876 2 21
Q ss_pred hCHHHHHHHHHHhcccCcEEEEE
Q 028410 161 LFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 161 ~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
..+....+.+++||+++.+
T Consensus 199 ----~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 199 ----KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp ----TTHHHHHTTEEEEEEEEEC
T ss_pred ----HHHHHHHHhhccCCEEEEE
Confidence 3567889999999997765
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=88.85 E-value=0.39 Score=39.29 Aligned_cols=35 Identities=20% Similarity=0.079 Sum_probs=32.0
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCC
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMD 129 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~ 129 (209)
..++..|||.-||+|..+.+..+.|. +.+|+|+++
T Consensus 240 ~~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~ 274 (319)
T 1eg2_A 240 SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAP 274 (319)
T ss_dssp SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESST
T ss_pred CCCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCc
Confidence 47899999999999999999888874 999999998
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=88.82 E-value=0.19 Score=41.42 Aligned_cols=110 Identities=9% Similarity=0.090 Sum_probs=70.6
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCC--ceE-EEecCCCCCCc---------EEEcCCCCCCC---CCCceeeEEcc----
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGV--ADV-TGVELMDSLPL---------VSRADPHNLPF---FDEAFDVAFTA---- 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~--~~v-~~vD~s~~~~~---------~~~~d~~~~~~---~~~~fD~i~~~---- 155 (209)
+...+++|+.||.|.....+.+.|. ..+ .++|+++.+.+ ++.+|+.++.. +...+|+++..
T Consensus 8 ~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ 87 (327)
T 3qv2_A 8 QKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEEVQVKNLDSISIKQIESLNCNTWFMSPPCQ 87 (327)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCCCBCCCTTTCCHHHHHHTCCCEEEECCCCT
T ss_pred CCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCCcccCChhhcCHHHhccCCCCEEEecCCcc
Confidence 4567999999999999999988764 456 79999986432 56788887652 22368999864
Q ss_pred cc--h-----hhh-CHH-HHHHHHHH-hccc---CcEEEEEEecCCc---ccHHHHHHHhccccc
Q 028410 156 HL--A-----EAL-FPS-RFVGEMER-TVKI---GGVCMVLMEECAG---REIKQIVELFRTSSF 204 (209)
Q Consensus 156 ~~--~-----~~~-~~~-~~l~~~~r-~Lkp---gG~lil~~~~~~~---~~~~~~~~l~~~~~~ 204 (209)
.. . ... |+. .++.++.+ +++. .-.+++..+..+- ..++.+.+.|+..|+
T Consensus 88 ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~~~~~~~i~~~l~~~GY 152 (327)
T 3qv2_A 88 PYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKESLVFKEIYNILIKNQY 152 (327)
T ss_dssp TCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGGSHHHHHHHHHHHHTTC
T ss_pred CcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhcChHHHHHHHHHHHhCCC
Confidence 12 1 011 333 56677777 5532 1344566555432 345667777776665
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=88.59 E-value=0.5 Score=38.45 Aligned_cols=88 Identities=15% Similarity=0.053 Sum_probs=56.4
Q ss_pred hcccCCCCCeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC--------CCCCceee
Q 028410 90 GKSLLFNHSKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAFDV 151 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~ 151 (209)
....++++.+||-.|+ |.|..+..+++ .|. +|+++|.+++..+. ...|..+.. .....+|+
T Consensus 142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~ 220 (334)
T 3qwb_A 142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDA 220 (334)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEE
T ss_pred HhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceE
Confidence 3446789999999994 34566666666 576 89999987663321 111222211 11346999
Q ss_pred EEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 152 i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
++.+.-. ..+....+.|+|||+++.+-
T Consensus 221 vid~~g~------~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 221 SFDSVGK------DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp EEECCGG------GGHHHHHHHEEEEEEEEECC
T ss_pred EEECCCh------HHHHHHHHHhccCCEEEEEc
Confidence 9874321 34678889999999987753
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.24 E-value=0.57 Score=38.27 Aligned_cols=86 Identities=10% Similarity=0.026 Sum_probs=56.6
Q ss_pred ccCCCCCeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC--------CCCCceeeEE
Q 028410 92 SLLFNHSKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAFDVAF 153 (209)
Q Consensus 92 ~~~~~~~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~i~ 153 (209)
..++++.+||-.|+ |.|..+..+++ .|. +|+++|.+++..+. ...|..+.. .....+|+++
T Consensus 162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi 240 (343)
T 2eih_A 162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVV 240 (343)
T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEE
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCceEEE
Confidence 45688999999998 45677777776 576 99999987653321 112332211 1124799998
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
.+.- . ..+....+.|++||+++.+-
T Consensus 241 ~~~g-~-----~~~~~~~~~l~~~G~~v~~g 265 (343)
T 2eih_A 241 DHTG-A-----LYFEGVIKATANGGRIAIAG 265 (343)
T ss_dssp ESSC-S-----SSHHHHHHHEEEEEEEEESS
T ss_pred ECCC-H-----HHHHHHHHhhccCCEEEEEe
Confidence 7432 1 24677889999999976653
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=88.07 E-value=0.085 Score=43.35 Aligned_cols=85 Identities=6% Similarity=0.063 Sum_probs=54.6
Q ss_pred cCCCCCeEEEEcCCC-ChhHHHHHh-c--CCceEEEecCCCCCCcEE-------EcCCCC-C----CCC-CCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGA-GHEVMAFNS-I--GVADVTGVELMDSLPLVS-------RADPHN-L----PFF-DEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~-G~~~~~la~-~--~~~~v~~vD~s~~~~~~~-------~~d~~~-~----~~~-~~~fD~i~~~ 155 (209)
.+ ++.+||-+|+|. |..+..+++ . |. +|+++|.+++..++. ..|..+ . .+. ...+|+|+..
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~ 245 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDL 245 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEEC
Confidence 45 899999999864 566667776 5 75 899999887643311 111111 0 011 2368999863
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
.- ....+....+.|+|||+++.+-
T Consensus 246 ~g-----~~~~~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 246 VG-----TEETTYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp SC-----CHHHHHHHHHHEEEEEEEEECC
T ss_pred CC-----ChHHHHHHHHHhhcCCEEEEeC
Confidence 21 1345788899999999977653
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.83 E-value=0.24 Score=40.58 Aligned_cols=86 Identities=15% Similarity=0.153 Sum_probs=55.6
Q ss_pred cCCCCCeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCC-CCC-------CCCceeeEEc
Q 028410 93 LLFNHSKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHN-LPF-------FDEAFDVAFT 154 (209)
Q Consensus 93 ~~~~~~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~-~~~-------~~~~fD~i~~ 154 (209)
.++++.+||-.|+ |.|..+..++. .|. +|+++|.+++..+. ...|..+ ..+ .++.+|+++.
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~ 244 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVIN 244 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEE
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEE
Confidence 5688999999998 34566666655 576 99999988763321 1223331 110 1126899887
Q ss_pred ccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+.- ....+++..+.|++||+++.+-
T Consensus 245 ~~g-----~~~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 245 VSV-----SEAAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp CSS-----CHHHHHHHTTSEEEEEEEEECC
T ss_pred CCC-----cHHHHHHHHHHHhcCCEEEEEe
Confidence 421 1346788899999999976653
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=87.79 E-value=0.85 Score=37.60 Aligned_cols=87 Identities=18% Similarity=0.189 Sum_probs=56.5
Q ss_pred cccCCCCCeEEEEc--CCCChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC-------CCCCceeeEE
Q 028410 91 KSLLFNHSKVLCVS--AGAGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP-------FFDEAFDVAF 153 (209)
Q Consensus 91 ~~~~~~~~~iLDiG--cG~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~-------~~~~~fD~i~ 153 (209)
...++++.+||-.| .|.|..+..+++ .|. +|+++|.+++..+. ...|..+.. .....+|+++
T Consensus 158 ~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vi 236 (362)
T 2c0c_A 158 LGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVY 236 (362)
T ss_dssp HTCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEE
T ss_pred hcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEE
Confidence 34568899999999 346677777776 576 89999988653221 111211111 1124689998
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
.+.- ...+....+.|++||+++++-
T Consensus 237 d~~g------~~~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 237 ESVG------GAMFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp ECSC------THHHHHHHHHEEEEEEEEECC
T ss_pred ECCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 7421 146788899999999976654
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=87.70 E-value=0.39 Score=39.18 Aligned_cols=91 Identities=13% Similarity=0.100 Sum_probs=57.4
Q ss_pred HHHHhcccCCCCCeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCcE--------EEcCCCCC-CC-------CC
Q 028410 86 KHLQGKSLLFNHSKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPLV--------SRADPHNL-PF-------FD 146 (209)
Q Consensus 86 ~~l~~~~~~~~~~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~~--------~~~d~~~~-~~-------~~ 146 (209)
..+.....++++.+||-.|+ |.|..+..+++ .|. +|+++|.+++..+. ...|..+. .+ ..
T Consensus 145 ~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~ 223 (345)
T 2j3h_A 145 AGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFP 223 (345)
T ss_dssp HHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCT
T ss_pred HHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhC
Confidence 33334456788999999997 34566666665 576 89999987653221 11232221 11 12
Q ss_pred CceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 147 EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 147 ~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
+.+|+++.+.- . ..+....+.|++||+++++
T Consensus 224 ~~~d~vi~~~g-----~-~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 224 NGIDIYFENVG-----G-KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp TCEEEEEESSC-----H-HHHHHHHTTEEEEEEEEEC
T ss_pred CCCcEEEECCC-----H-HHHHHHHHHHhcCCEEEEE
Confidence 46899887421 1 3678889999999998765
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=87.62 E-value=5.4 Score=32.31 Aligned_cols=89 Identities=11% Similarity=0.031 Sum_probs=56.6
Q ss_pred CCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC------------------cEEEcCCCCCC---------CCCCce
Q 028410 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP------------------LVSRADPHNLP---------FFDEAF 149 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~------------------~~~~~d~~~~~---------~~~~~f 149 (209)
...|+++|||--.....+.......++-+|. |..+ .++..|+.+ . +..+..
T Consensus 103 ~~QvV~LGaGlDTra~Rl~~~~~~~v~evD~-P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 103 IRQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSAR 180 (310)
T ss_dssp CCEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSC
T ss_pred CCeEEEeCCCCCchhhhccCCCCcEEEEcCC-HHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCC
Confidence 3579999999777766665321247888883 4311 256677765 2 212233
Q ss_pred eeEEcccchhhhC---HHHHHHHHHHhcccCcEEEEEEecC
Q 028410 150 DVAFTAHLAEALF---PSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 150 D~i~~~~~~~~~~---~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
=++++-.+.+++. ...+++.+...+.||+.+++.....
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~ 221 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPL 221 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 4455556777773 3677788888888999977776544
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=87.60 E-value=0.79 Score=37.43 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=34.2
Q ss_pred EcCCCC-C-CCCCCceeeEEcc---cch--------hhh-CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 136 RADPHN-L-PFFDEAFDVAFTA---HLA--------EAL-FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 136 ~~d~~~-~-~~~~~~fD~i~~~---~~~--------~~~-~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
++|..+ + .+++++||+|++. +.. .++ .....+.++.++|+|||.+++.....
T Consensus 44 ~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~ 109 (319)
T 1eg2_A 44 VCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ 109 (319)
T ss_dssp ECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred CCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcc
Confidence 566543 1 2346778888875 111 122 34677889999999999988876643
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=87.59 E-value=0.48 Score=38.41 Aligned_cols=91 Identities=12% Similarity=0.045 Sum_probs=57.9
Q ss_pred HHhcccCCCCCeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC--------CCCCce
Q 028410 88 LQGKSLLFNHSKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAF 149 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~f 149 (209)
+.....++++.+||-.|+ |.|..+..+++ .|. +|+++|.+++..+. ...|..+.. .....+
T Consensus 132 l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~ 210 (325)
T 3jyn_A 132 LRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKC 210 (325)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCE
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCc
Confidence 334456789999999983 34566666666 576 99999988763321 112222211 123479
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEe
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
|+++.+.-. ..+....+.|++||+++++-.
T Consensus 211 Dvvid~~g~------~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 211 PVVYDGVGQ------DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp EEEEESSCG------GGHHHHHTTEEEEEEEEECCC
T ss_pred eEEEECCCh------HHHHHHHHHhcCCCEEEEEec
Confidence 999874221 346778899999999877643
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.64 E-value=0.61 Score=37.74 Aligned_cols=87 Identities=9% Similarity=0.023 Sum_probs=55.1
Q ss_pred cccCCCCCeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC--------CCCCceeeE
Q 028410 91 KSLLFNHSKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAFDVA 152 (209)
Q Consensus 91 ~~~~~~~~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~i 152 (209)
...++++.+||-.|+ |.|.....++. .|. +|+++|.+++..+. ...|..+.. .....+|++
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~v 213 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVV 213 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEE
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCceEE
Confidence 456788999999994 34455555555 576 99999988653221 112322211 112469999
Q ss_pred EcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+.+.- ...++...+.|++||+++.+-
T Consensus 214 i~~~g------~~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 214 YDSVG------RDTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp EECSC------GGGHHHHHHTEEEEEEEEECC
T ss_pred EECCc------hHHHHHHHHHhcCCCEEEEEe
Confidence 87532 234678889999999976654
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=86.40 E-value=0.24 Score=40.59 Aligned_cols=87 Identities=13% Similarity=0.198 Sum_probs=55.7
Q ss_pred ccCCCCCeEEEEcCC--CChhHHHHHh-c-CCceEEEecCCCCCCcE-------EEcCCCCCC-------CCC-CceeeE
Q 028410 92 SLLFNHSKVLCVSAG--AGHEVMAFNS-I-GVADVTGVELMDSLPLV-------SRADPHNLP-------FFD-EAFDVA 152 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG--~G~~~~~la~-~-~~~~v~~vD~s~~~~~~-------~~~d~~~~~-------~~~-~~fD~i 152 (209)
..++++.+||-.|+| .|..+..+++ . |. +|+++|.+++..+. ...|..+.. ... +.+|++
T Consensus 166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v 244 (347)
T 1jvb_A 166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAV 244 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCceEE
Confidence 456889999999987 3455555555 5 76 89999988763321 111222211 112 479999
Q ss_pred EcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+.+.- ....+.+..+.|+|||+++++-
T Consensus 245 i~~~g-----~~~~~~~~~~~l~~~G~iv~~g 271 (347)
T 1jvb_A 245 IDLNN-----SEKTLSVYPKALAKQGKYVMVG 271 (347)
T ss_dssp EESCC-----CHHHHTTGGGGEEEEEEEEECC
T ss_pred EECCC-----CHHHHHHHHHHHhcCCEEEEEC
Confidence 87421 1345677889999999976653
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.17 E-value=1.5 Score=35.53 Aligned_cols=91 Identities=9% Similarity=0.033 Sum_probs=56.3
Q ss_pred hcccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCCC--------CCCceeeE
Q 028410 90 GKSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLPF--------FDEAFDVA 152 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~~--------~~~~fD~i 152 (209)
......++.+||=.|+|. |..+..+++ .|...++++|.+++..++ ...|..+... ....+|+|
T Consensus 154 ~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v 233 (346)
T 4a2c_A 154 HLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLI 233 (346)
T ss_dssp HHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEEE
T ss_pred HHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCcccc
Confidence 344668899999999864 345555555 577688999998764331 1122222111 12346776
Q ss_pred EcccchhhhCHHHHHHHHHHhcccCcEEEEEEe
Q 028410 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+... -....+....+.+++||.+++.-.
T Consensus 234 ~d~~-----G~~~~~~~~~~~l~~~G~~v~~g~ 261 (346)
T 4a2c_A 234 LETA-----GVPQTVELAVEIAGPHAQLALVGT 261 (346)
T ss_dssp EECS-----CSHHHHHHHHHHCCTTCEEEECCC
T ss_pred cccc-----cccchhhhhhheecCCeEEEEEec
Confidence 6521 124557788899999999776543
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=85.97 E-value=12 Score=30.52 Aligned_cols=88 Identities=7% Similarity=0.106 Sum_probs=58.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCC-----------------------------------CCCcEEEcC
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMD-----------------------------------SLPLVSRAD 138 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~-----------------------------------~~~~~~~~d 138 (209)
.+...|+.+|||.......+... +...++-+|.-+ .....+-.|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 46789999999999999998863 434677777411 112255667
Q ss_pred CCCCCC---------CCCceeeEEcccchhhhCH---HHHHHHHHHhcccCcEEEEE
Q 028410 139 PHNLPF---------FDEAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 139 ~~~~~~---------~~~~fD~i~~~~~~~~~~~---~~~l~~~~r~LkpgG~lil~ 183 (209)
+.+... ..+...++++-.+..++.+ ..+++.+.+.. |+|.+++.
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~ 231 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISY 231 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEE
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEE
Confidence 766321 2345677777778888855 55666666666 78876544
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=85.78 E-value=1.1 Score=36.42 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=57.0
Q ss_pred HHhcccCCCCCeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCCC--------CCCce
Q 028410 88 LQGKSLLFNHSKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLPF--------FDEAF 149 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~~--------~~~~f 149 (209)
+.....++++.+||-.|+ |.|.....++. .|. +|+++|.+++..+. ...|..+..+ ....+
T Consensus 137 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~ 215 (333)
T 1wly_A 137 LHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGV 215 (333)
T ss_dssp HHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCE
T ss_pred HHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCC
Confidence 333456788999999995 45566666665 576 99999988753221 1123222111 12468
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
|+++.+.-. ..++...+.|++||+++.+-
T Consensus 216 d~vi~~~g~------~~~~~~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 216 DVVYDSIGK------DTLQKSLDCLRPRGMCAAYG 244 (333)
T ss_dssp EEEEECSCT------TTHHHHHHTEEEEEEEEECC
T ss_pred eEEEECCcH------HHHHHHHHhhccCCEEEEEe
Confidence 999874211 34678889999999976654
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=85.54 E-value=1 Score=36.65 Aligned_cols=90 Identities=10% Similarity=-0.000 Sum_probs=54.0
Q ss_pred cccCCCCCeEEEEcCCCC-hhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC--------CCCCceeeEE
Q 028410 91 KSLLFNHSKVLCVSAGAG-HEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAFDVAF 153 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~G-~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~i~ 153 (209)
....+++.+||=+|+|++ ..+..+++ .+..+|+++|.+++..+. ...|..+.. .....+|.++
T Consensus 158 ~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~ 237 (348)
T 4eez_A 158 VSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAI 237 (348)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEE
T ss_pred ccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEE
Confidence 345689999999999863 34444444 444699999998773321 111222211 1123456555
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEEEe
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
.... ....+....+.+++||.+++.-.
T Consensus 238 ~~~~-----~~~~~~~~~~~l~~~G~~v~~g~ 264 (348)
T 4eez_A 238 VCAV-----ARIAFEQAVASLKPMGKMVAVAV 264 (348)
T ss_dssp ECCS-----CHHHHHHHHHTEEEEEEEEECCC
T ss_pred Eecc-----CcchhheeheeecCCceEEEEec
Confidence 4221 24567888899999999776643
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=85.42 E-value=1.3 Score=36.32 Aligned_cols=88 Identities=7% Similarity=-0.023 Sum_probs=54.9
Q ss_pred hcccCCCCCeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC--------CCCCceee
Q 028410 90 GKSLLFNHSKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAFDV 151 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~ 151 (209)
....++++.+||-.|+ |.|..+..++. .|. +|+++|.+++..+. ...|..+.. .....+|+
T Consensus 156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 234 (354)
T 2j8z_A 156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNL 234 (354)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEE
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcCCCceE
Confidence 4456788999999984 34455555555 576 89999988653321 112222211 11246999
Q ss_pred EEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 152 i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
++.+.-. ..+.+..+.|++||+++++-
T Consensus 235 vi~~~G~------~~~~~~~~~l~~~G~iv~~G 261 (354)
T 2j8z_A 235 ILDCIGG------SYWEKNVNCLALDGRWVLYG 261 (354)
T ss_dssp EEESSCG------GGHHHHHHHEEEEEEEEECC
T ss_pred EEECCCc------hHHHHHHHhccCCCEEEEEe
Confidence 9874321 13677789999999977654
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.29 E-value=0.28 Score=39.79 Aligned_cols=61 Identities=13% Similarity=0.202 Sum_probs=46.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCce--EEEecCCCCCC----------cEEEcCCCCCCCC----CCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVAD--VTGVELMDSLP----------LVSRADPHNLPFF----DEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~--v~~vD~s~~~~----------~~~~~d~~~~~~~----~~~fD~i~~~ 155 (209)
+...+++|+-||.|.....+.+.|... +.++|+++.+. .+..+|+.++... ...+|+++..
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~~~~~~~DI~~i~~~~i~~~~~~Dll~gg 90 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQKHIQEWGPFDLVIGG 90 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTTCEEEECCGGGCCHHHHHHTCCCSEEEEC
T ss_pred CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCCCCceeCCChHHccHHHhcccCCcCEEEec
Confidence 567899999999999999888877644 68999987733 2678888876421 1468999874
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=85.08 E-value=1.8 Score=30.33 Aligned_cols=83 Identities=8% Similarity=-0.060 Sum_probs=51.5
Q ss_pred CCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCC--------CcEEEcCCCCCC----CCCCceeeEEcccchhh
Q 028410 97 HSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSL--------PLVSRADPHNLP----FFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~--------~~~~~~d~~~~~----~~~~~fD~i~~~~~~~~ 160 (209)
..+|+=+|+| ..+..+++ .|. +|+++|.+++. ..++.+|..+.. ..-..+|+++...-..
T Consensus 7 ~~~viIiG~G--~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~- 82 (140)
T 3fwz_A 7 CNHALLVGYG--RVGSLLGEKLLASDI-PLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNG- 82 (140)
T ss_dssp CSCEEEECCS--HHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCH-
T ss_pred CCCEEEECcC--HHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCCh-
Confidence 4578888875 67776665 466 99999999863 347788887632 1235688887632111
Q ss_pred hCHHHHHHHHHHhcccCcEEEEEE
Q 028410 161 LFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 161 ~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
.....+....+.+.|+..++.-.
T Consensus 83 -~~n~~~~~~a~~~~~~~~iiar~ 105 (140)
T 3fwz_A 83 -YEAGEIVASARAKNPDIEIIARA 105 (140)
T ss_dssp -HHHHHHHHHHHHHCSSSEEEEEE
T ss_pred -HHHHHHHHHHHHHCCCCeEEEEE
Confidence 01222344667778888754433
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=84.82 E-value=0.72 Score=37.73 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=51.6
Q ss_pred CCCeEEEEc-CC-CChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCC-C-----CCCCCceeeEEcccchh
Q 028410 96 NHSKVLCVS-AG-AGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHN-L-----PFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 96 ~~~~iLDiG-cG-~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~-~-----~~~~~~fD~i~~~~~~~ 159 (209)
++.+||-.| +| .|..+..+++ .|. +|+++|.+++..+. ...|..+ + ....+.+|+++...
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~--- 225 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTF--- 225 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESS---
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECC---
Confidence 889999995 33 3555566666 576 99999987663321 1112211 0 01234689888632
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEE
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
.....+....+.|++||+++.+
T Consensus 226 --g~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 226 --NTDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEES
T ss_pred --CchHHHHHHHHHhccCCEEEEE
Confidence 2345678889999999998654
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=84.63 E-value=0.51 Score=38.21 Aligned_cols=84 Identities=17% Similarity=0.156 Sum_probs=52.6
Q ss_pred cCCCCC-eEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCC------CCCCCceeeEEcc
Q 028410 93 LLFNHS-KVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNL------PFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~-~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~------~~~~~~fD~i~~~ 155 (209)
.++++. +||-.|+ |.|..+..+++ .|. +|++++.+++..+. ...|..+. ....+.+|+++..
T Consensus 145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~ 223 (328)
T 1xa0_A 145 GLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDP 223 (328)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEEC
T ss_pred CCCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCcEEEecCCcHHHHHHHhcCCcccEEEEC
Confidence 456665 8999997 45666667776 575 89999988764321 01111111 1123468998864
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
.-. ..+.+..+.+++||+++++
T Consensus 224 ~g~------~~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 224 VGG------RTLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp STT------TTHHHHHHTEEEEEEEEEC
T ss_pred CcH------HHHHHHHHhhccCCEEEEE
Confidence 211 2467888999999997765
|
| >2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.50 E-value=0.46 Score=33.92 Aligned_cols=40 Identities=13% Similarity=0.314 Sum_probs=30.6
Q ss_pred CCCCCceeeEEccc-ch-hhh-CHHHHHHHHHHhcccCcEEEE
Q 028410 143 PFFDEAFDVAFTAH-LA-EAL-FPSRFVGEMERTVKIGGVCMV 182 (209)
Q Consensus 143 ~~~~~~fD~i~~~~-~~-~~~-~~~~~l~~~~r~LkpgG~lil 182 (209)
.+++++||.|+.-. -. .+. .+..++..+.+.|||||.+..
T Consensus 54 sLp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g 96 (136)
T 2km1_A 54 TLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG 96 (136)
T ss_dssp CCCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred cCCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe
Confidence 45789999997732 12 223 579999999999999999765
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=84.14 E-value=1.4 Score=36.14 Aligned_cols=88 Identities=10% Similarity=0.093 Sum_probs=55.0
Q ss_pred hcccCCCC--CeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCcE--------EEcCCCCCCC-------CCCce
Q 028410 90 GKSLLFNH--SKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPLV--------SRADPHNLPF-------FDEAF 149 (209)
Q Consensus 90 ~~~~~~~~--~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~~--------~~~d~~~~~~-------~~~~f 149 (209)
....++++ .+||-.|+ |.|.....++. .|..+|+++|.+++..+. ...|..+..+ ..+.+
T Consensus 152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~ 231 (357)
T 2zb4_A 152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGV 231 (357)
T ss_dssp HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTTCE
T ss_pred HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCCCC
Confidence 34466888 99999997 33455555555 565589999987642221 1122222110 11268
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
|+++.+.- ...+....+.|++||+++++
T Consensus 232 d~vi~~~G------~~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 232 DVYFDNVG------GNISDTVISQMNENSHIILC 259 (357)
T ss_dssp EEEEESCC------HHHHHHHHHTEEEEEEEEEC
T ss_pred CEEEECCC------HHHHHHHHHHhccCcEEEEE
Confidence 98887432 25678889999999997765
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=84.09 E-value=0.59 Score=38.41 Aligned_cols=91 Identities=13% Similarity=0.125 Sum_probs=56.9
Q ss_pred HHHhcccCCCCCeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCCC-------CCCce
Q 028410 87 HLQGKSLLFNHSKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLPF-------FDEAF 149 (209)
Q Consensus 87 ~l~~~~~~~~~~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~~-------~~~~f 149 (209)
.+.....++++.+||-.|+ |.|..+..+++ .|. +|+++|.+++..+. ...|..+..+ ..+.+
T Consensus 158 ~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~ 236 (353)
T 4dup_A 158 NLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGV 236 (353)
T ss_dssp HHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCE
T ss_pred HHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCc
Confidence 3334566789999999953 24566666666 576 89999988763321 1112222111 13469
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
|+++.+.-. ..+....+.|++||+++++-
T Consensus 237 Dvvid~~g~------~~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 237 DIILDMIGA------AYFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp EEEEESCCG------GGHHHHHHTEEEEEEEEECC
T ss_pred eEEEECCCH------HHHHHHHHHhccCCEEEEEE
Confidence 999874321 24677889999999977654
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=82.50 E-value=1 Score=37.08 Aligned_cols=79 Identities=22% Similarity=0.180 Sum_probs=50.1
Q ss_pred CCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCC---CCCc-------EEEcCCCCCCCCC------CceeeEEcccch
Q 028410 97 HSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMD---SLPL-------VSRADPHNLPFFD------EAFDVAFTAHLA 158 (209)
Q Consensus 97 ~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~---~~~~-------~~~~d~~~~~~~~------~~fD~i~~~~~~ 158 (209)
+.+||-+|+|. |..+..+++ .|. +|+++|.++ +..+ -.. | .+ .+.+ +.+|+++.+.-.
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~ga~~v-~-~~-~~~~~~~~~~~~~d~vid~~g~ 256 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEETKTNYY-N-SS-NGYDKLKDSVGKFDVIIDATGA 256 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHHHTCEEE-E-CT-TCSHHHHHHHCCEEEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHHhCCcee-c-hH-HHHHHHHHhCCCCCEEEECCCC
Confidence 89999999842 344444554 576 999999987 4222 112 4 33 2211 468999874211
Q ss_pred hhhCHHHHH-HHHHHhcccCcEEEEEE
Q 028410 159 EALFPSRFV-GEMERTVKIGGVCMVLM 184 (209)
Q Consensus 159 ~~~~~~~~l-~~~~r~LkpgG~lil~~ 184 (209)
...+ +...+.|++||+++.+-
T Consensus 257 -----~~~~~~~~~~~l~~~G~iv~~g 278 (366)
T 2cdc_A 257 -----DVNILGNVIPLLGRNGVLGLFG 278 (366)
T ss_dssp -----CTHHHHHHGGGEEEEEEEEECS
T ss_pred -----hHHHHHHHHHHHhcCCEEEEEe
Confidence 1235 78889999999976653
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=81.92 E-value=0.67 Score=37.54 Aligned_cols=85 Identities=16% Similarity=0.085 Sum_probs=53.4
Q ss_pred cCCCCC-eEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCc---------EEEc---CCCC-CCCCCCceeeEEcc
Q 028410 93 LLFNHS-KVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPL---------VSRA---DPHN-LPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~-~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~~---d~~~-~~~~~~~fD~i~~~ 155 (209)
.++++. +||-.|+ |.|..+..+++ .|. +|++++.+++..+ ++.. +... .....+.+|+++..
T Consensus 146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~ 224 (330)
T 1tt7_A 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDP 224 (330)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEES
T ss_pred CcCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEEC
Confidence 456665 8999997 34566666666 576 7999998876433 1111 1011 11223469998863
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
.- . ..+.+..+.+++||+++++-
T Consensus 225 ~g----~--~~~~~~~~~l~~~G~iv~~G 247 (330)
T 1tt7_A 225 VG----G--KQLASLLSKIQYGGSVAVSG 247 (330)
T ss_dssp CC----T--HHHHHHHTTEEEEEEEEECC
T ss_pred Cc----H--HHHHHHHHhhcCCCEEEEEe
Confidence 21 1 25788899999999977653
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=81.42 E-value=1.2 Score=35.96 Aligned_cols=79 Identities=16% Similarity=0.191 Sum_probs=51.4
Q ss_pred eEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCcEE-------EcCCCC----CCCCCCceeeEEcccchhhhCHH
Q 028410 99 KVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPLVS-------RADPHN----LPFFDEAFDVAFTAHLAEALFPS 164 (209)
Q Consensus 99 ~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~~~-------~~d~~~----~~~~~~~fD~i~~~~~~~~~~~~ 164 (209)
+||=.|+ |.|..+..+++ .|. +|+++|.+++..++. ..|..+ ..+..+.+|+++...- .
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~g------~ 221 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTVG------D 221 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEESSC------H
T ss_pred eEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEECCC------c
Confidence 4998886 45677777777 576 999999887744310 111111 1123457898876321 1
Q ss_pred HHHHHHHHhcccCcEEEEEE
Q 028410 165 RFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 165 ~~l~~~~r~LkpgG~lil~~ 184 (209)
..+.+..+.|+|+|+++.+-
T Consensus 222 ~~~~~~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 222 KVLAKVLAQMNYGGCVAACG 241 (324)
T ss_dssp HHHHHHHHTEEEEEEEEECC
T ss_pred HHHHHHHHHHhcCCEEEEEe
Confidence 27889999999999987663
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=80.86 E-value=1.2 Score=37.86 Aligned_cols=86 Identities=17% Similarity=0.121 Sum_probs=54.6
Q ss_pred ccCCCCCeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCCC-----------------
Q 028410 92 SLLFNHSKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLPF----------------- 144 (209)
Q Consensus 92 ~~~~~~~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~~----------------- 144 (209)
..++++.+||=+|+ |.|..+..+++ .|. ++++++.+++..++ ...|..+..+
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga-~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~ 302 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGA-NPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRF 302 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHH
Confidence 46689999999997 34566666776 575 88888876653321 1112211111
Q ss_pred --------CCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 145 --------FDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 145 --------~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
....+|+++...- . ..+....+.|++||.++++-
T Consensus 303 ~~~i~~~t~g~g~Dvvid~~G-----~-~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 303 GKRIRELTGGEDIDIVFEHPG-----R-ETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp HHHHHHHHTSCCEEEEEECSC-----H-HHHHHHHHHEEEEEEEEESC
T ss_pred HHHHHHHhCCCCCcEEEEcCC-----c-hhHHHHHHHhhCCcEEEEEe
Confidence 1247898876321 1 46788889999999977653
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=80.82 E-value=9 Score=26.35 Aligned_cols=56 Identities=13% Similarity=0.091 Sum_probs=38.8
Q ss_pred CCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCC--------CcEEEcCCCCCC----CCCCceeeEEcc
Q 028410 97 HSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSL--------PLVSRADPHNLP----FFDEAFDVAFTA 155 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~--------~~~~~~d~~~~~----~~~~~fD~i~~~ 155 (209)
..+|+=+|+| ..+..+++ .|+ +|+++|.+++. ..++.+|..+.. ..-..+|+++..
T Consensus 6 ~~~v~I~G~G--~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~ 77 (141)
T 3llv_A 6 RYEYIVIGSE--AAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLIT 77 (141)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEEC
T ss_pred CCEEEEECCC--HHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEe
Confidence 4578888884 67777765 466 99999998763 346778887632 123568888773
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=80.09 E-value=0.82 Score=37.59 Aligned_cols=86 Identities=12% Similarity=0.064 Sum_probs=51.1
Q ss_pred cCC-CCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcEEE--------cCCCCC---CCCCCceeeEEcccch
Q 028410 93 LLF-NHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLVSR--------ADPHNL---PFFDEAFDVAFTAHLA 158 (209)
Q Consensus 93 ~~~-~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~~~--------~d~~~~---~~~~~~fD~i~~~~~~ 158 (209)
.+. ++.+||-+|+|. |..+..+++ .|. +|+++|.+++..+... .|..+. .-..+.+|+++...-.
T Consensus 176 ~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~ 254 (357)
T 2cf5_A 176 GLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPV 254 (357)
T ss_dssp STTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCS
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCC
Confidence 456 899999998752 445555555 476 8999999876433211 111110 0001358998863211
Q ss_pred hhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 159 EALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 159 ~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
...+....+.|+|||+++.+-
T Consensus 255 -----~~~~~~~~~~l~~~G~iv~~G 275 (357)
T 2cf5_A 255 -----HHALEPYLSLLKLDGKLILMG 275 (357)
T ss_dssp -----CCCSHHHHTTEEEEEEEEECS
T ss_pred -----hHHHHHHHHHhccCCEEEEeC
Confidence 112456778999999976653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 209 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.84 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.84 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.82 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.8 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.8 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.77 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.76 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.75 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.74 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.72 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.72 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.7 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.69 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.69 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.68 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.68 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.67 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.65 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.65 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.63 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.59 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.59 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.59 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.58 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.57 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.57 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.57 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.56 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.56 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.55 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.53 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.53 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.52 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.52 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.5 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.49 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.47 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.46 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.46 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.46 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.46 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.45 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.44 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.42 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.41 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.37 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.37 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.36 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.34 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.28 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.16 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.16 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.15 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.13 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.08 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.04 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.03 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.03 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.99 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.94 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.93 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.93 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.88 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.85 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.79 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.78 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.77 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.76 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.76 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.76 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.73 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.73 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.65 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.65 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.6 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.58 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.56 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.53 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.53 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.44 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.41 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.4 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.4 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.38 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.37 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.36 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.35 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.33 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.31 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.3 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.29 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.27 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.19 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.03 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.86 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.76 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.63 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.4 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.33 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.19 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.1 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.75 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.64 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.61 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.34 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.15 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.06 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.99 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.98 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 95.6 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 94.89 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.81 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.59 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.47 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.31 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 93.58 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 93.46 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.45 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 93.26 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 93.11 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.03 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 92.99 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 92.94 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 92.81 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 92.41 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 92.33 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 92.32 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 92.04 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 91.17 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 90.96 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 90.93 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 90.57 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 90.13 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 89.79 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 89.7 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 89.01 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 88.85 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 88.37 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 88.04 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 86.51 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 86.27 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 85.64 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 84.97 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 83.92 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 82.06 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 81.2 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 81.03 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.84 E-value=3.1e-21 Score=151.01 Aligned_cols=98 Identities=28% Similarity=0.413 Sum_probs=86.5
Q ss_pred HHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeE
Q 028410 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVA 152 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i 152 (209)
+.+...++++.+|||||||+|.++..+++.+. +|+|+|+|+.++ +++++|++++|+++++||+|
T Consensus 7 ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v 85 (231)
T d1vl5a_ 7 LMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIV 85 (231)
T ss_dssp HHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEE
T ss_pred HHHhcCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhcccccccccccccccccccccccccccccc
Confidence 34445789999999999999999999999864 999999997643 48999999999999999999
Q ss_pred Ecccchhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 153 FTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 153 ~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+|..+.+|+ ++.++++++.++|||||++++....
T Consensus 86 ~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~ 120 (231)
T d1vl5a_ 86 TCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS 120 (231)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cccccccccCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 999999999 9999999999999999999887543
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.84 E-value=3.7e-21 Score=151.34 Aligned_cols=98 Identities=23% Similarity=0.350 Sum_probs=87.2
Q ss_pred HHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeE
Q 028410 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVA 152 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i 152 (209)
+.+...++++.+|||+|||+|..+..+++.+ .+|+|+|+|+.|+ .++++|++++|+++++||+|
T Consensus 8 l~~~~~~~~~~rILDiGcGtG~~~~~la~~~-~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 86 (234)
T d1xxla_ 8 MIKTAECRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDII 86 (234)
T ss_dssp HHHHHTCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEE
T ss_pred HHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC-CeEEEEeCChhhhhhhhhhhccccccccccccccccccccccccccee
Confidence 3344478999999999999999999999986 5999999998754 38899999999999999999
Q ss_pred Ecccchhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 153 FTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 153 ~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+|.++.+|+ ++.++++++.|+|||||+++++...
T Consensus 87 ~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~ 121 (234)
T d1xxla_ 87 TCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY 121 (234)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcC
Confidence 999999988 9999999999999999998887543
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.82 E-value=2.4e-20 Score=146.73 Aligned_cols=92 Identities=21% Similarity=0.327 Sum_probs=83.1
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------EEEcCCCCCCCCCCceeeEEcc-cchhhh-C
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------VSRADPHNLPFFDEAFDVAFTA-HLAEAL-F 162 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------~~~~d~~~~~~~~~~fD~i~~~-~~~~~~-~ 162 (209)
..++.+|||+|||+|..+..+++.|. +|+|+|+|+.|++ ++.+|++++++++++||+|+|. .+.+|+ +
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d 118 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 118 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred cCCCCEEEEECCCCchhcccccccce-EEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhh
Confidence 46788999999999999999999876 9999999998664 7899999999999999999985 678888 9
Q ss_pred HHHHHHHHHHhcccCcEEEEEEec
Q 028410 163 PSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 163 ~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+.++++++.|+|||||.+++.+..
T Consensus 119 ~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 119 KDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHHHHhhcCcCcEEEEEECC
Confidence 999999999999999999888753
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.80 E-value=8.9e-20 Score=141.63 Aligned_cols=93 Identities=20% Similarity=0.338 Sum_probs=82.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcccch
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
.++++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++ ++.+|+.++++++++||+|+|..+.
T Consensus 34 ~l~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l 112 (226)
T d1ve3a1 34 YMKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSI 112 (226)
T ss_dssp SCCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCG
T ss_pred hcCCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecch
Confidence 357889999999999999999999875 9999999988663 7889999999999999999999988
Q ss_pred hhh---CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 159 EAL---FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 159 ~~~---~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+|+ ++.++++++.++|||||.+++.+..
T Consensus 113 ~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 113 VHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp GGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 887 4577999999999999999887654
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.80 E-value=1.2e-19 Score=146.56 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=89.8
Q ss_pred HHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC----------------cEEEcCCCCCCC
Q 028410 82 AHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP----------------LVSRADPHNLPF 144 (209)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~ 144 (209)
..+...+.....++++.+|||||||+|..+..+++. +. +|+|+|+|+.++ .+.++|+.++|+
T Consensus 53 ~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~ 131 (282)
T d2o57a1 53 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC 131 (282)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCc-EEEEEeccchhhhhhhcccccccccccccccccccccccc
Confidence 344455556667899999999999999999999985 54 999999998743 488999999999
Q ss_pred CCCceeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 145 FDEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 145 ~~~~fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
++++||+|++..+.+|+ ++.++++++.++|||||++++...
T Consensus 132 ~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 132 EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99999999999998888 899999999999999999888754
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=4.6e-19 Score=136.59 Aligned_cols=106 Identities=24% Similarity=0.383 Sum_probs=90.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC--------cEEEcCCCCCCCCCCceeeEEcccchhhh-CHHH
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------LVSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSR 165 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~--------~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~~ 165 (209)
.++.+|||||||+|.++..++ +++|+|+|+.++ .++++|++++++++++||+|++.++.+|+ ++..
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~~~ 109 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPER 109 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHH
T ss_pred CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccccccccccccccccccccccccccccccccccccccc
Confidence 667799999999999988774 468999999855 48999999999999999999999999999 9999
Q ss_pred HHHHHHHhcccCcEEEEEEecCCc---------------------ccHHHHHHHhcccccc
Q 028410 166 FVGEMERTVKIGGVCMVLMEECAG---------------------REIKQIVELFRTSSFT 205 (209)
Q Consensus 166 ~l~~~~r~LkpgG~lil~~~~~~~---------------------~~~~~~~~l~~~~~~~ 205 (209)
+++++.++|||||.+++.+...+. .+..++.++++++||.
T Consensus 110 ~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~ 170 (208)
T d1vlma_ 110 ALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFE 170 (208)
T ss_dssp HHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCE
T ss_pred chhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCe
Confidence 999999999999999998764321 2466788888888873
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=8.3e-19 Score=138.68 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=93.0
Q ss_pred HhcccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceee
Q 028410 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDV 151 (209)
Q Consensus 89 ~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~ 151 (209)
.+...++++.+|||||||+|..+..+++. | .+|+|+|+|+.++ +++++|+.++ +++++||+
T Consensus 26 ~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~~fD~ 103 (245)
T d1nkva_ 26 GRVLRMKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANEKCDV 103 (245)
T ss_dssp HHHTCCCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSSCEEE
T ss_pred HHHcCCCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccCceeE
Confidence 33347799999999999999999999884 6 4999999998743 5899999998 46899999
Q ss_pred EEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEecCC-------------------cccHHHHHHHhccccc
Q 028410 152 AFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECA-------------------GREIKQIVELFRTSSF 204 (209)
Q Consensus 152 i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~-------------------~~~~~~~~~l~~~~~~ 204 (209)
|+|..+.+|. ++..++++++++|||||++++...... ......+.+.+.++||
T Consensus 104 v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~ 176 (245)
T d1nkva_ 104 AACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGY 176 (245)
T ss_dssp EEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTB
T ss_pred EEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHcCC
Confidence 9999988888 999999999999999999988754311 1244556667777766
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.7e-18 Score=135.02 Aligned_cols=111 Identities=12% Similarity=0.153 Sum_probs=93.8
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcccch
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
..++.+|||+|||+|..+..+++.+..+|+|+|+|+.|+ .+.++|++++++++++||+|++..+.
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l 137 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 137 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence 366789999999999999998765445999999999865 37899999999999999999999999
Q ss_pred hhh-CH--HHHHHHHHHhcccCcEEEEEEecCCc------------ccHHHHHHHhccccc
Q 028410 159 EAL-FP--SRFVGEMERTVKIGGVCMVLMEECAG------------REIKQIVELFRTSSF 204 (209)
Q Consensus 159 ~~~-~~--~~~l~~~~r~LkpgG~lil~~~~~~~------------~~~~~~~~l~~~~~~ 204 (209)
+|+ ++ .+++++++++|||||.+++....... .....+.++|+++||
T Consensus 138 ~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf 198 (222)
T d2ex4a1 138 GHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGL 198 (222)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTC
T ss_pred ccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCC
Confidence 988 44 47999999999999999887544321 257788999999988
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.74 E-value=2.3e-18 Score=134.61 Aligned_cols=90 Identities=14% Similarity=0.170 Sum_probs=79.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC-----------cEEEcCCCCCCCCCCceeeEEcccchhhh-C
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-----------LVSRADPHNLPFFDEAFDVAFTAHLAEAL-F 162 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~-----------~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~ 162 (209)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.++ .+..+|+.+.++ +++||+|++.++.+|+ +
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~d 96 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHIDD 96 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGGCSS
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhccccccccccccccccccc-ccccccccccceeEecCC
Confidence 4567899999999999999998875 899999998744 477888888876 6899999999999999 9
Q ss_pred HHHHHHHHH-HhcccCcEEEEEEec
Q 028410 163 PSRFVGEME-RTVKIGGVCMVLMEE 186 (209)
Q Consensus 163 ~~~~l~~~~-r~LkpgG~lil~~~~ 186 (209)
+..++.++. ++|||||.+++.+..
T Consensus 97 ~~~~l~~i~~~~Lk~gG~l~i~~pn 121 (225)
T d2p7ia1 97 PVALLKRINDDWLAEGGRLFLVCPN 121 (225)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCceEEEEeCC
Confidence 999999998 789999999998753
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.72 E-value=7.6e-18 Score=132.93 Aligned_cols=100 Identities=17% Similarity=0.279 Sum_probs=81.9
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC--------------cEEEcCCCCCCCCCCce
Q 028410 84 FFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------------LVSRADPHNLPFFDEAF 149 (209)
Q Consensus 84 ~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~--------------~~~~~d~~~~~~~~~~f 149 (209)
++..+.......+..+|||+|||+|..+..+++.|. +|+|+|+|+.|+ .+.++|+++++++ ++|
T Consensus 29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~f 106 (251)
T d1wzna1 29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEF 106 (251)
T ss_dssp HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCE
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccccchheehhhhhcccc-ccc
Confidence 334444444567788999999999999999999876 999999999855 3889999999986 589
Q ss_pred eeEEcc-cchhhh---CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 150 DVAFTA-HLAEAL---FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 150 D~i~~~-~~~~~~---~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
|+|+|. ++.+++ +..++++++.++|||||++++.+.
T Consensus 107 D~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 999985 455555 457899999999999999988654
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.72 E-value=5.5e-18 Score=134.97 Aligned_cols=113 Identities=16% Similarity=0.099 Sum_probs=93.4
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-------------EEEcCCCCCCCCCCceeeEEcccch
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-------------VSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-------------~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
....+..+|||+|||+|..+..++..+..+|+++|+|+.+++ +.++|+.++++++++||+|++..+.
T Consensus 89 l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl 168 (254)
T d1xtpa_ 89 LPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTA 168 (254)
T ss_dssp STTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeeccc
Confidence 345678899999999999999988743459999999998653 7889999999999999999999999
Q ss_pred hhh-CH--HHHHHHHHHhcccCcEEEEEEecCCc-------------ccHHHHHHHhccccc
Q 028410 159 EAL-FP--SRFVGEMERTVKIGGVCMVLMEECAG-------------REIKQIVELFRTSSF 204 (209)
Q Consensus 159 ~~~-~~--~~~l~~~~r~LkpgG~lil~~~~~~~-------------~~~~~~~~l~~~~~~ 204 (209)
+|+ ++ .+++++++++|||||.+++....... .....+.++|+++||
T Consensus 169 ~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf 230 (254)
T d1xtpa_ 169 IYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGV 230 (254)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTC
T ss_pred cccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCC
Confidence 998 44 58899999999999999886543211 145678899999888
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=2.6e-17 Score=131.91 Aligned_cols=90 Identities=23% Similarity=0.258 Sum_probs=77.4
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC----------cEEEcCCCCCCCCCCceeeEEcccchhhh
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP----------LVSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~----------~~~~~d~~~~~~~~~~fD~i~~~~~~~~~ 161 (209)
...++.+|||+|||+|.++..+++. +..+++|+|+|+.++ .+.++|+.++|+++++||+|++.+..++
T Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~- 159 (268)
T d1p91a_ 81 LDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK- 159 (268)
T ss_dssp SCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC-
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH-
Confidence 4477889999999999999999985 446999999999855 3889999999999999999999766554
Q ss_pred CHHHHHHHHHHhcccCcEEEEEEecCC
Q 028410 162 FPSRFVGEMERTVKIGGVCMVLMEECA 188 (209)
Q Consensus 162 ~~~~~l~~~~r~LkpgG~lil~~~~~~ 188 (209)
++|+.|+|||||.+++.+...+
T Consensus 160 -----~~e~~rvLkpgG~l~~~~p~~~ 181 (268)
T d1p91a_ 160 -----AEELARVVKPGGWVITATPGPR 181 (268)
T ss_dssp -----HHHHHHHEEEEEEEEEEEECTT
T ss_pred -----HHHHHHHhCCCcEEEEEeeCCc
Confidence 5789999999999998887643
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.69 E-value=1.3e-17 Score=126.45 Aligned_cols=113 Identities=15% Similarity=0.154 Sum_probs=88.7
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------------------------EE
Q 028410 83 HFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------------------VS 135 (209)
Q Consensus 83 ~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------------------------~~ 135 (209)
.+++.+ .+.++.+|||+|||+|+.+..|++.|+ +|+|+|+|+.|++ +.
T Consensus 11 ~~~~~l----~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T d1pjza_ 11 QYWSSL----NVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW 85 (201)
T ss_dssp HHHHHH----CCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred HHHHHc----CCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccccee
Confidence 345555 678999999999999999999999987 9999999987553 56
Q ss_pred EcCCCCCCC-CCCceeeEEcccchhhhC---HHHHHHHHHHhcccCcEEEEEEecCC---------cccHHHHHHHhc
Q 028410 136 RADPHNLPF-FDEAFDVAFTAHLAEALF---PSRFVGEMERTVKIGGVCMVLMEECA---------GREIKQIVELFR 200 (209)
Q Consensus 136 ~~d~~~~~~-~~~~fD~i~~~~~~~~~~---~~~~l~~~~r~LkpgG~lil~~~~~~---------~~~~~~~~~l~~ 200 (209)
.+|+.+++. ...+||+|++..+.+++. ...+++++.++|||||.+++...... ..+..++.++|.
T Consensus 86 ~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~p~~~~~~~el~~l~~ 163 (201)
T d1pjza_ 86 CGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMS 163 (201)
T ss_dssp EECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSC
T ss_pred cccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCCCccccCCHHHHHHHhC
Confidence 777777653 457899999998888873 47899999999999999887765431 124455666665
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.69 E-value=5.4e-17 Score=128.72 Aligned_cols=94 Identities=15% Similarity=0.237 Sum_probs=79.1
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc----------------EEEcCCCCCCC-CCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------VSRADPHNLPF-FDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------------~~~~d~~~~~~-~~~~fD~i~~~ 155 (209)
..+++.+|||+|||+|..+..+++.+.++|+|+|+|+.+++ +.++|+...++ .+++||+|+|.
T Consensus 21 ~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~ 100 (252)
T d1ri5a_ 21 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 100 (252)
T ss_dssp HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred hCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc
Confidence 35789999999999999999999877779999999999663 77899987765 47789999998
Q ss_pred cchhhh-C----HHHHHHHHHHhcccCcEEEEEEec
Q 028410 156 HLAEAL-F----PSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 156 ~~~~~~-~----~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.+.++. + ...+++++.++|||||++++.+..
T Consensus 101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 777765 3 357899999999999999887653
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.68 E-value=1.6e-17 Score=127.14 Aligned_cols=89 Identities=20% Similarity=0.305 Sum_probs=76.8
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcccchhh
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 160 (209)
++.+|||+|||+|..+..+++.|. +|+|+|+|+.++ .+...|+.++++ +++||+|++..+.+|
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMF 107 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGG
T ss_pred CCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeeec
Confidence 455999999999999999999986 999999999754 367888888875 789999999999888
Q ss_pred hC---HHHHHHHHHHhcccCcEEEEEEec
Q 028410 161 LF---PSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 161 ~~---~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+. ..++++++.++|||||++++....
T Consensus 108 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 108 LEAQTIPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp SCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 83 367999999999999999887654
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.68 E-value=1.5e-16 Score=123.90 Aligned_cols=90 Identities=9% Similarity=0.076 Sum_probs=74.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc---CCceEEEecCCCCCCc----------------EEEcCCCCCCCCCCceeeEE
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI---GVADVTGVELMDSLPL----------------VSRADPHNLPFFDEAFDVAF 153 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~---~~~~v~~vD~s~~~~~----------------~~~~d~~~~~~~~~~fD~i~ 153 (209)
..+++.+|||+|||+|..+..+++. +..+|+|+|+|+.|++ +..+|..+. +.+.+|+++
T Consensus 36 ~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~--~~~~~d~i~ 113 (225)
T d1im8a_ 36 FVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV--EIKNASMVI 113 (225)
T ss_dssp HCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC--CCCSEEEEE
T ss_pred hcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc--ccccceeeE
Confidence 3588999999999999999999873 4459999999998775 344555444 567899999
Q ss_pred cccchhhh---CHHHHHHHHHHhcccCcEEEEEE
Q 028410 154 TAHLAEAL---FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 154 ~~~~~~~~---~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
++.+.+++ ++.+++++++|+|||||.+++..
T Consensus 114 ~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 114 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp EESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeeeccccChhhHHHHHHHHHHhCCCCceeeccc
Confidence 98887776 67899999999999999998874
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.67 E-value=4.3e-17 Score=131.45 Aligned_cols=92 Identities=15% Similarity=0.247 Sum_probs=79.9
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCCC--------------cEEEcCCCCCCCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSLP--------------LVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~~--------------~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
.+.++.+|||+|||+|..+..+++. + ..+|+|+|+|+.++ .+.++|+.+++++ ++||+|+|.+
T Consensus 24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~-~~fD~v~~~~ 102 (281)
T d2gh1a1 24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHA 102 (281)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEES
T ss_pred ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccccc-CCceEEEEeh
Confidence 3477899999999999999999983 3 25899999998743 3789999999875 5799999999
Q ss_pred chhhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 157 LAEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 157 ~~~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+.+|+ ++..+++++.++|||||.+++...
T Consensus 103 ~l~~~~d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 103 FLLHMTTPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp CGGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hhhcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 99999 999999999999999999887664
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.65 E-value=6.7e-17 Score=126.72 Aligned_cols=131 Identities=15% Similarity=0.143 Sum_probs=95.8
Q ss_pred HhhHhHHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc-------------EEEcCC
Q 028410 74 WKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL-------------VSRADP 139 (209)
Q Consensus 74 ~~~~~~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~-------------~~~~d~ 139 (209)
|....+.....+..-.....++++.+|||+|||+|..+..+++. +.+.|+|+|+|+.+++ .+.+|.
T Consensus 52 w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~ 131 (230)
T d1g8sa_ 52 WNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA 131 (230)
T ss_dssp CCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT
T ss_pred ECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEee
Confidence 55555555544444444556799999999999999999999995 5679999999998654 566666
Q ss_pred CCC-CCCCCceeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEecCC-------cccHHHHHHHhccccc
Q 028410 140 HNL-PFFDEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECA-------GREIKQIVELFRTSSF 204 (209)
Q Consensus 140 ~~~-~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~-------~~~~~~~~~l~~~~~~ 204 (209)
... ++.+..+|++++.+..++. ++..++.++.+.|||||.++++..... ...+.+..+.++..||
T Consensus 132 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF 205 (230)
T d1g8sa_ 132 NKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGF 205 (230)
T ss_dssp TCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTE
T ss_pred ccCcccccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCC
Confidence 663 3456677776665555555 678899999999999999988864431 1235556667777777
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.65 E-value=9.2e-17 Score=126.67 Aligned_cols=89 Identities=16% Similarity=0.219 Sum_probs=74.5
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC--------------cEEEcCCCCCCCCCCceeeEEcc-cchh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------------LVSRADPHNLPFFDEAFDVAFTA-HLAE 159 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~--------------~~~~~d~~~~~~~~~~fD~i~~~-~~~~ 159 (209)
.++.+|||+|||+|..+..+++.|. +|+|+|+|+.|+ +++++|+.++++ +++||+|+|. ++.+
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI-NRKFDLITCCLDSTN 113 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC-SCCEEEEEECTTGGG
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCccceeeccchhhhcc-cccccccceeeeeee
Confidence 4467999999999999999999876 999999999865 488999998886 5689999984 4444
Q ss_pred hh----CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 160 AL----FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 160 ~~----~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
++ ++..+++++++.|||||.+++.+.
T Consensus 114 ~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 44 457799999999999999887654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=3.7e-16 Score=122.12 Aligned_cols=108 Identities=17% Similarity=0.077 Sum_probs=87.6
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC--------------------------------cEEEcCCC
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------------------------------LVSRADPH 140 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~--------------------------------~~~~~d~~ 140 (209)
...++.+|||+|||+|..+..|++.|+ +|+|+|+|+.++ ++.++|+.
T Consensus 42 ~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 42 KGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp TTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 457889999999999999999999998 999999998754 25677777
Q ss_pred CCC-CCCCceeeEEcccchhhh---CHHHHHHHHHHhcccCcEEEEEEecCC---------cccHHHHHHHhcc
Q 028410 141 NLP-FFDEAFDVAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEECA---------GREIKQIVELFRT 201 (209)
Q Consensus 141 ~~~-~~~~~fD~i~~~~~~~~~---~~~~~l~~~~r~LkpgG~lil~~~~~~---------~~~~~~~~~l~~~ 201 (209)
+++ ...+.||+|+...+++++ +....++++.++|||||.+++.+...+ .....++.++|..
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~ 194 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK 194 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT
T ss_pred hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC
Confidence 764 567899999998887777 347899999999999999887765432 2356678888864
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.59 E-value=3.3e-15 Score=120.79 Aligned_cols=101 Identities=17% Similarity=0.083 Sum_probs=80.7
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc-------------EEEcCCCCCCCCCCcee
Q 028410 85 FKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL-------------VSRADPHNLPFFDEAFD 150 (209)
Q Consensus 85 ~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~-------------~~~~d~~~~~~~~~~fD 150 (209)
+..+.+...++++.+|||||||.|..+.++++ .|. +|+|+++|++.++ .+..+..+.++++++||
T Consensus 50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD 128 (291)
T d1kpia_ 50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVD 128 (291)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCS
T ss_pred HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccccc
Confidence 44444555889999999999999999999987 676 9999999987432 22333344566789999
Q ss_pred eEEcccchhhh-C---------HHHHHHHHHHhcccCcEEEEEEec
Q 028410 151 VAFTAHLAEAL-F---------PSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 151 ~i~~~~~~~~~-~---------~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.|+|..+++|+ + ...+++++.++|||||++++.+-.
T Consensus 129 ~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~ 174 (291)
T d1kpia_ 129 RIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 174 (291)
T ss_dssp EEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred eEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence 99999888887 4 479999999999999999987644
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.59 E-value=7.2e-16 Score=122.40 Aligned_cols=105 Identities=17% Similarity=0.185 Sum_probs=83.7
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcccchh
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
.+++.+|||+|||+|..+..+++.|. +|+|+|+|+.+++ +.++|+.+ .+++++||+|+++...+
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHH
T ss_pred cCccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhccccc
Confidence 47899999999999999999998885 8999999999774 56666654 35678999999964443
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
...+++.++.++|||||++++.--- ..+...+.+.++..+|
T Consensus 196 --~l~~l~~~~~~~LkpGG~lilSgil--~~~~~~v~~~~~~~Gf 236 (254)
T d2nxca1 196 --LHAALAPRYREALVPGGRALLTGIL--KDRAPLVREAMAGAGF 236 (254)
T ss_dssp --HHHHHHHHHHHHEEEEEEEEEEEEE--GGGHHHHHHHHHHTTC
T ss_pred --cHHHHHHHHHHhcCCCcEEEEEecc--hhhHHHHHHHHHHCCC
Confidence 2467889999999999998875221 3467788888888887
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.59 E-value=3.4e-16 Score=124.74 Aligned_cols=111 Identities=23% Similarity=0.294 Sum_probs=89.7
Q ss_pred hcccCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC------------------cEEEcCCCCCCCCCCce
Q 028410 90 GKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP------------------LVSRADPHNLPFFDEAF 149 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~------------------~~~~~d~~~~~~~~~~f 149 (209)
....++|+++|||+|||+|..+..|++. +.++|+++|++++++ .+.++|+.+.++++++|
T Consensus 90 ~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~f 169 (264)
T d1i9ga_ 90 HEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSV 169 (264)
T ss_dssp HHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCE
T ss_pred HHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCc
Confidence 3347899999999999999999999983 568999999997743 37888998889999999
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhc-cccccc
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR-TSSFTE 206 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~-~~~~~~ 206 (209)
|.|+++ ..+|..++.++.++|||||.+++. .+...+...+.+.++ +.+|+.
T Consensus 170 DaV~ld----lp~P~~~l~~~~~~LkpGG~lv~~--~P~i~Qv~~~~~~l~~~~~f~~ 221 (264)
T d1i9ga_ 170 DRAVLD----MLAPWEVLDAVSRLLVAGGVLMVY--VATVTQLSRIVEALRAKQCWTE 221 (264)
T ss_dssp EEEEEE----SSCGGGGHHHHHHHEEEEEEEEEE--ESSHHHHHHHHHHHHHHSSBCC
T ss_pred ceEEEe----cCCHHHHHHHHHhccCCCCEEEEE--eCccChHHHHHHHHHHcCCeec
Confidence 999872 127899999999999999996544 455668888888776 345643
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.58 E-value=2e-15 Score=115.06 Aligned_cols=93 Identities=16% Similarity=0.105 Sum_probs=76.5
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC-----------------cEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-----------------LVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~-----------------~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
...++.+|||+|||+|..+..+++.+ .+|+++|+|+.++ .+..+|..+ ++++++||+|+++
T Consensus 49 ~~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~ 126 (194)
T d1dusa_ 49 VVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITN 126 (194)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEEC
T ss_pred CcCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEEEc
Confidence 56789999999999999999999875 4999999998733 367788876 5678999999998
Q ss_pred cchhhh-C-HHHHHHHHHHhcccCcEEEEEEecC
Q 028410 156 HLAEAL-F-PSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 156 ~~~~~~-~-~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
...++. + ...+++++.+.|||||.+++.....
T Consensus 127 ~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 160 (194)
T d1dusa_ 127 PPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp CCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred ccEEecchhhhhHHHHHHHhcCcCcEEEEEEeCc
Confidence 665554 3 3778999999999999988876543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.57 E-value=4e-16 Score=120.58 Aligned_cols=94 Identities=15% Similarity=0.119 Sum_probs=74.4
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc-------------EEEcCCCCCCCCCC---ceeeEEc
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL-------------VSRADPHNLPFFDE---AFDVAFT 154 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~-------------~~~~d~~~~~~~~~---~fD~i~~ 154 (209)
..++|+.+|||+|||+|..+..+++ .+.++|+|+|+|+.+++ ++.+|..+.+.... .+|++++
T Consensus 52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~ 131 (209)
T d1nt2a_ 52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQ 131 (209)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEe
Confidence 3579999999999999999999998 46679999999998664 77888877654443 4555544
Q ss_pred ccchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.+.+..++..++.++.++|||||.++++...
T Consensus 132 -~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 162 (209)
T d1nt2a_ 132 -DIAQKNQIEILKANAEFFLKEKGEVVIMVKA 162 (209)
T ss_dssp -CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred -cccChhhHHHHHHHHHHHhccCCeEEEEEEc
Confidence 2333346789999999999999999988754
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.57 E-value=1.4e-15 Score=115.25 Aligned_cols=107 Identities=13% Similarity=0.055 Sum_probs=85.0
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
.++++.+|||+|||+|..+..+++.+ .+|+|+|+++.++ +++++|+.+...+...||.|++..
T Consensus 30 ~~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~ 108 (186)
T d1l3ia_ 30 EPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGG 108 (186)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESC
T ss_pred CCCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeC
Confidence 66899999999999999999999874 5999999998844 377888888777789999999864
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
..+ +..++++++.+.|||||++++.... .++...+.+.++..++
T Consensus 109 ~~~--~~~~~~~~~~~~LkpgG~lvi~~~~--~e~~~~~~~~l~~~~~ 152 (186)
T d1l3ia_ 109 SGG--ELQEILRIIKDKLKPGGRIIVTAIL--LETKFEAMECLRDLGF 152 (186)
T ss_dssp CTT--CHHHHHHHHHHTEEEEEEEEEEECB--HHHHHHHHHHHHHTTC
T ss_pred ccc--cchHHHHHHHHHhCcCCEEEEEeec--cccHHHHHHHHHHcCC
Confidence 332 4678999999999999998766543 3345556666666554
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.3e-15 Score=122.21 Aligned_cols=97 Identities=10% Similarity=0.007 Sum_probs=74.6
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc------C-CceEEEecCCCCCCcE------------------EEcCCC------C
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI------G-VADVTGVELMDSLPLV------------------SRADPH------N 141 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~------~-~~~v~~vD~s~~~~~~------------------~~~d~~------~ 141 (209)
..++..+|||||||+|..+..+++. + ...++|+|+|+.|++. ...+++ .
T Consensus 37 ~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (280)
T d1jqea_ 37 DTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRML 116 (280)
T ss_dssp TTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHT
T ss_pred cCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhc
Confidence 3456668999999999998877552 1 2368999999886641 122211 1
Q ss_pred CCCCCCceeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEecCCc
Q 028410 142 LPFFDEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAG 189 (209)
Q Consensus 142 ~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~ 189 (209)
.+.++++||+|++.++.+|. ++..++++++++|||||.+++.+.....
T Consensus 117 ~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~ 165 (280)
T d1jqea_ 117 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS 165 (280)
T ss_dssp TSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTS
T ss_pred ccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcc
Confidence 24578999999999999999 9999999999999999999888776543
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=5.2e-16 Score=122.60 Aligned_cols=111 Identities=12% Similarity=0.039 Sum_probs=86.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcEE---------------------------------------
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVS--------------------------------------- 135 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~~--------------------------------------- 135 (209)
.++.+|||+|||+|..+..++..+..+|+|+|+|+.+++..
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 129 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence 56789999999999998877776556899999999876421
Q ss_pred ----------EcCCCCCCCCCCceeeEEcccchhhh-----CHHHHHHHHHHhcccCcEEEEEEecCC------------
Q 028410 136 ----------RADPHNLPFFDEAFDVAFTAHLAEAL-----FPSRFVGEMERTVKIGGVCMVLMEECA------------ 188 (209)
Q Consensus 136 ----------~~d~~~~~~~~~~fD~i~~~~~~~~~-----~~~~~l~~~~r~LkpgG~lil~~~~~~------------ 188 (209)
..+....++++++||+|++..+.+++ ++..+++++.++|||||.+++......
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~ 209 (257)
T d2a14a1 130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC 209 (257)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred hhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccc
Confidence 11222245778999999998887776 346789999999999999988765432
Q ss_pred -cccHHHHHHHhcccccc
Q 028410 189 -GREIKQIVELFRTSSFT 205 (209)
Q Consensus 189 -~~~~~~~~~l~~~~~~~ 205 (209)
......+.++|+.+||.
T Consensus 210 ~~~~~~~~~~~l~~aGf~ 227 (257)
T d2a14a1 210 VALEKGEVEQAVLDAGFD 227 (257)
T ss_dssp CCCCHHHHHHHHHHTTEE
T ss_pred cCCCHHHHHHHHHHCCCE
Confidence 24678899999999983
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.56 E-value=4.6e-15 Score=119.39 Aligned_cols=97 Identities=18% Similarity=0.087 Sum_probs=77.8
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc----------------EEEcCCCCCCCCCC
Q 028410 85 FKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL----------------VSRADPHNLPFFDE 147 (209)
Q Consensus 85 ~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~----------------~~~~d~~~~~~~~~ 147 (209)
+..+.....++++.+|||||||.|..+..+++. |. +|+|+|+|+++++ +...|..+ .++
T Consensus 41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~---~~~ 116 (280)
T d2fk8a1 41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED---FAE 116 (280)
T ss_dssp HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG---CCC
T ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh---hcc
Confidence 444555557899999999999999999999884 75 9999999987443 33344333 357
Q ss_pred ceeeEEcccchhhh---CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 148 AFDVAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 148 ~fD~i~~~~~~~~~---~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+||.|++..+.+|+ +...+++++.++|||||++++...
T Consensus 117 ~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i 157 (280)
T d2fk8a1 117 PVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS 157 (280)
T ss_dssp CCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred chhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEe
Confidence 99999999888888 348999999999999999988653
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.55 E-value=2.5e-15 Score=118.87 Aligned_cols=111 Identities=19% Similarity=0.164 Sum_probs=88.2
Q ss_pred HhcccCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCcee
Q 028410 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFD 150 (209)
Q Consensus 89 ~~~~~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD 150 (209)
.....++++++|||+|||+|..+..+++. +.++|+++|++++++ ++..+|+.+. +++++||
T Consensus 78 i~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD 156 (250)
T d1yb2a1 78 IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYD 156 (250)
T ss_dssp ---CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEE
T ss_pred HHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceee
Confidence 34446799999999999999999999983 567999999998733 3677888775 4678999
Q ss_pred eEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccccc
Q 028410 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFTE 206 (209)
Q Consensus 151 ~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~~ 206 (209)
.|+++ ..+|..++.++.++|||||++++.+. ...|...+.+.+++++|..
T Consensus 157 ~V~ld----~p~p~~~l~~~~~~LKpGG~lv~~~P--~i~Qv~~~~~~l~~~gf~~ 206 (250)
T d1yb2a1 157 AVIAD----IPDPWNHVQKIASMMKPGSVATFYLP--NFDQSEKTVLSLSASGMHH 206 (250)
T ss_dssp EEEEC----CSCGGGSHHHHHHTEEEEEEEEEEES--SHHHHHHHHHHSGGGTEEE
T ss_pred eeeec----CCchHHHHHHHHHhcCCCceEEEEeC--CcChHHHHHHHHHHCCCce
Confidence 99873 22688899999999999999765444 4567888889999888853
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.4e-15 Score=118.95 Aligned_cols=89 Identities=16% Similarity=0.017 Sum_probs=70.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCC--CCCCCCceeeEEc----
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHN--LPFFDEAFDVAFT---- 154 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~--~~~~~~~fD~i~~---- 154 (209)
.++.+|||||||+|..+..+++.+..+++++|+|+.+++ ++.+++.. .++++++||.|+.
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~ 131 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 131 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccc
Confidence 678899999999999999999865468999999998664 33444433 3567889999984
Q ss_pred -ccchhhh-CHHHHHHHHHHhcccCcEEEEE
Q 028410 155 -AHLAEAL-FPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 155 -~~~~~~~-~~~~~l~~~~r~LkpgG~lil~ 183 (209)
....++. ++..++++++|+|||||++++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 132 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 3445555 7899999999999999997664
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.53 E-value=2.9e-14 Score=114.85 Aligned_cols=98 Identities=22% Similarity=0.171 Sum_probs=80.4
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC----------------cEEEcCCCCCCCCC
Q 028410 84 FFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP----------------LVSRADPHNLPFFD 146 (209)
Q Consensus 84 ~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~ 146 (209)
..+.+.+...++++.+|||||||.|..+.++++ .|. +|+|+++|+..+ .+..+|..++ +
T Consensus 50 k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~---~ 125 (285)
T d1kpga_ 50 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF---D 125 (285)
T ss_dssp HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC---C
T ss_pred HHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc---c
Confidence 344555566889999999999999999999988 575 999999998733 2566666555 4
Q ss_pred CceeeEEcccchhhh---CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 147 EAFDVAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 147 ~~fD~i~~~~~~~~~---~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
++||.|++..+.+|+ +...+++++.++|||||++++..-
T Consensus 126 ~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i 167 (285)
T d1kpga_ 126 EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI 167 (285)
T ss_dssp CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEE
Confidence 689999999888887 348999999999999999988654
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.52 E-value=6e-15 Score=115.16 Aligned_cols=112 Identities=15% Similarity=0.185 Sum_probs=83.0
Q ss_pred HhhHhHHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCCc-------------EEEcC
Q 028410 74 WKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPL-------------VSRAD 138 (209)
Q Consensus 74 ~~~~~~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~~-------------~~~~d 138 (209)
|....+.....+-.-++...++++++|||+|||+|..+.++++. +.++|+|+|+++.+++ .+..|
T Consensus 51 w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d 130 (227)
T d1g8aa_ 51 WNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGD 130 (227)
T ss_dssp CCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECC
T ss_pred ECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEE
Confidence 55444444443333334456799999999999999999999994 4689999999998553 55666
Q ss_pred CCC---CCCCCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 139 PHN---LPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 139 ~~~---~~~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
... .+.....+|+|++. +.+.-++..++.++.+.|||||.++++...
T Consensus 131 ~~~~~~~~~~~~~vD~i~~d-~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka 180 (227)
T d1g8aa_ 131 ATKPEEYRALVPKVDVIFED-VAQPTQAKILIDNAEVYLKRGGYGMIAVKS 180 (227)
T ss_dssp TTCGGGGTTTCCCEEEEEEC-CCSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CCCcccccccccceEEEEEE-ccccchHHHHHHHHHHhcccCCeEEEEEEC
Confidence 654 33455789998873 333336788999999999999999988754
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.52 E-value=4.3e-14 Score=111.88 Aligned_cols=111 Identities=15% Similarity=0.091 Sum_probs=84.8
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCC---------------CCcEEEcCCCCCCCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
.+.+..+|||||||+|..+..+++ .+..+++++|+.+. .+.++.+|+.+. . ..+||+|++.+
T Consensus 77 d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~-~~~~D~v~~~~ 154 (253)
T d1tw3a2 77 DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP-L-PRKADAIILSF 154 (253)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-SSCEEEEEEES
T ss_pred CCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhh-c-ccchhheeecc
Confidence 457778999999999999999998 56679999997431 234788888653 2 35799999999
Q ss_pred chhhhC-H--HHHHHHHHHhcccCcEEEEEEecCCc-----------------------ccHHHHHHHhcccccc
Q 028410 157 LAEALF-P--SRFVGEMERTVKIGGVCMVLMEECAG-----------------------REIKQIVELFRTSSFT 205 (209)
Q Consensus 157 ~~~~~~-~--~~~l~~~~r~LkpgG~lil~~~~~~~-----------------------~~~~~~~~l~~~~~~~ 205 (209)
+.++.. . .+++++++++|||||++++....... ....++.++|.++||.
T Consensus 155 vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~ 229 (253)
T d1tw3a2 155 VLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLV 229 (253)
T ss_dssp CGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEE
T ss_pred ccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCe
Confidence 988873 3 57899999999999999887533210 1346677788888883
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=2.2e-14 Score=115.72 Aligned_cols=89 Identities=20% Similarity=0.289 Sum_probs=68.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-------------------EEEcCCCC----CCCCCCceee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-------------------VSRADPHN----LPFFDEAFDV 151 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-------------------~~~~d~~~----~~~~~~~fD~ 151 (209)
.++.+|||+|||+|..+..+++.|. +|+|+|+|+.|++ +...+... +| ..++||.
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fd~ 132 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-AGDGFDA 132 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-CTTCEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC-CCCCceE
Confidence 4678999999999999999999886 9999999999775 22233222 22 3578999
Q ss_pred EEcc-cchhhh-C-------HHHHHHHHHHhcccCcEEEEEEe
Q 028410 152 AFTA-HLAEAL-F-------PSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 152 i~~~-~~~~~~-~-------~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
|+|. ++..|+ + ...+++++.++|||||.+++.+.
T Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 9874 355554 2 46799999999999999888654
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.49 E-value=2.1e-14 Score=111.07 Aligned_cols=90 Identities=19% Similarity=0.140 Sum_probs=73.2
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCCc---------------EEEcCCCCCCCCCCceeeEEc
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPL---------------VSRADPHNLPFFDEAFDVAFT 154 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~~---------------~~~~d~~~~~~~~~~fD~i~~ 154 (209)
..++++.+|||+|||+|+.+..+++. +.+.|+++|+++.+++ ++.+|..+....+++||+|++
T Consensus 71 l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~ 150 (213)
T d1dl5a1 71 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFV 150 (213)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred hhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhh
Confidence 36899999999999999999999983 3569999999987443 678888887777889999999
Q ss_pred ccchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
....++. | .++.+.|||||++++.+..
T Consensus 151 ~~~~~~~-p----~~l~~~LkpGG~lv~pv~~ 177 (213)
T d1dl5a1 151 TVGVDEV-P----ETWFTQLKEGGRVIVPINL 177 (213)
T ss_dssp CSBBSCC-C----HHHHHHEEEEEEEEEEBCB
T ss_pred hccHHHh-H----HHHHHhcCCCcEEEEEECc
Confidence 8765544 2 3567889999998886643
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=8.6e-14 Score=113.60 Aligned_cols=87 Identities=17% Similarity=0.244 Sum_probs=74.6
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC---------------CcEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
.++.+|||+|||+|.++..+++.|..+|+|+|.|+.+ +.++++|+.+++++.++||+|++..+.+
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 5789999999999999999999887799999998762 3488999999999999999999864443
Q ss_pred hh----CHHHHHHHHHHhcccCcEEE
Q 028410 160 AL----FPSRFVGEMERTVKIGGVCM 181 (209)
Q Consensus 160 ~~----~~~~~l~~~~r~LkpgG~li 181 (209)
.+ ....++..+.+.|||||.++
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 33 56889999999999999976
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.46 E-value=2.6e-14 Score=109.79 Aligned_cols=92 Identities=16% Similarity=0.180 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC---------------cEEEcCCCCCC--CCCCceeeEEccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP---------------LVSRADPHNLP--FFDEAFDVAFTAH 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~--~~~~~fD~i~~~~ 156 (209)
+++-.|||||||+|..+..+|+ .+...++|+|+++.++ .++.+|+..+. ++++++|.|++..
T Consensus 28 ~~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~f 107 (204)
T d2fcaa1 28 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 107 (204)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccc
Confidence 3455899999999999999998 5677999999998744 37889988765 7899999998864
Q ss_pred chhhh---------CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 157 LAEAL---------FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 157 ~~~~~---------~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
...+. -...++.+++|+|||||.+.+.+..
T Consensus 108 p~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~ 146 (204)
T d2fcaa1 108 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN 146 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred ccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECC
Confidence 33222 1268999999999999998887643
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.46 E-value=1.1e-13 Score=113.50 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=73.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC---------------CCcEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
.++.+|||+|||+|.++..+++.|..+|+++|.|+. .+.++++|+.++++++++||+|++..+.+
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 478999999999999999999988779999999874 22378999999999999999999964433
Q ss_pred hh----CHHHHHHHHHHhcccCcEEE
Q 028410 160 AL----FPSRFVGEMERTVKIGGVCM 181 (209)
Q Consensus 160 ~~----~~~~~l~~~~r~LkpgG~li 181 (209)
++ ....++.++.|+|||||.++
T Consensus 117 ~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeccchhHHHHHHHHHhccCCCeEEE
Confidence 33 57889999999999999874
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.8e-13 Score=111.31 Aligned_cols=90 Identities=20% Similarity=0.231 Sum_probs=75.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
...++.+|||+|||+|.++..+++.|..+|+++|.|+.+. .++.+|+.++++++++||+|++..+
T Consensus 32 ~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~ 111 (311)
T d2fyta1 32 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 111 (311)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred ccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence 4467899999999999999999998877999999998732 3889999999999999999999654
Q ss_pred hhhh----CHHHHHHHHHHhcccCcEEEE
Q 028410 158 AEAL----FPSRFVGEMERTVKIGGVCMV 182 (209)
Q Consensus 158 ~~~~----~~~~~l~~~~r~LkpgG~lil 182 (209)
.++. .+..++....+.|||||+++-
T Consensus 112 ~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 112 GYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eeecccccccHHHHHHHHhcCCCCcEEec
Confidence 4444 246777778899999999763
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=4.7e-14 Score=109.85 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=73.5
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCCc--------------------EEEcCCCCCCCCCCcee
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPL--------------------VSRADPHNLPFFDEAFD 150 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~~--------------------~~~~d~~~~~~~~~~fD 150 (209)
.++++.+|||+|||+|+.+..+++. +.++|+++|+++++++ +..+|..+...++++||
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD 152 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD 152 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhh
Confidence 4589999999999999999999984 4579999999987442 67888888777889999
Q ss_pred eEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 151 ~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
+|++....++. ..++.+.|||||++++.+...
T Consensus 153 ~I~~~~~~~~i-----p~~l~~~LkpGG~LV~pv~~~ 184 (224)
T d1i1na_ 153 AIHVGAAAPVV-----PQALIDQLKPGGRLILPVGPA 184 (224)
T ss_dssp EEEECSBBSSC-----CHHHHHTEEEEEEEEEEESCT
T ss_pred hhhhhcchhhc-----CHHHHhhcCCCcEEEEEEccC
Confidence 99997665544 235788999999998877654
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=2.4e-14 Score=114.09 Aligned_cols=111 Identities=13% Similarity=0.089 Sum_probs=83.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcE----------------------------------------
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLV---------------------------------------- 134 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~---------------------------------------- 134 (209)
..+.++||+|||+|..+...+.....+|+|+|+|+.|++.
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 132 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence 5688999999999988765554334599999999986652
Q ss_pred -----EEcCCCC------CCCCCCceeeEEcccchhhh-----CHHHHHHHHHHhcccCcEEEEEEecCC----------
Q 028410 135 -----SRADPHN------LPFFDEAFDVAFTAHLAEAL-----FPSRFVGEMERTVKIGGVCMVLMEECA---------- 188 (209)
Q Consensus 135 -----~~~d~~~------~~~~~~~fD~i~~~~~~~~~-----~~~~~l~~~~r~LkpgG~lil~~~~~~---------- 188 (209)
...|+.+ .+.++++||+|++..+.+++ +...+++++.++|||||.+++......
T Consensus 133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~ 212 (263)
T d2g72a1 133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL 212 (263)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCccc
Confidence 2234332 23456789999999888776 247889999999999999988754321
Q ss_pred ---cccHHHHHHHhcccccc
Q 028410 189 ---GREIKQIVELFRTSSFT 205 (209)
Q Consensus 189 ---~~~~~~~~~l~~~~~~~ 205 (209)
......+.++|..+||.
T Consensus 213 ~~~~~t~e~v~~~l~~aGf~ 232 (263)
T d2g72a1 213 TVVPVSEEEVREALVRSGYK 232 (263)
T ss_dssp ECCCCCHHHHHHHHHHTTEE
T ss_pred ccCCCCHHHHHHHHHHCCCe
Confidence 24778899999999883
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=2.4e-14 Score=117.57 Aligned_cols=96 Identities=17% Similarity=0.142 Sum_probs=77.0
Q ss_pred HHhcccCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCC------------------------CcEEEcCCCCC
Q 028410 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSL------------------------PLVSRADPHNL 142 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~------------------------~~~~~~d~~~~ 142 (209)
+.+...++++.+|||+|||+|..+..++. .+..+++|+|+++.+ +.++++|+.+.
T Consensus 143 ~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~ 222 (328)
T d1nw3a_ 143 MIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE 222 (328)
T ss_dssp HHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSH
T ss_pred HHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccc
Confidence 33444789999999999999999999987 577789999999863 34889999998
Q ss_pred CCCCCce--eeEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 143 PFFDEAF--DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 143 ~~~~~~f--D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
++.+..+ |+|+++...+..+....+.++.+.|||||+++..
T Consensus 223 ~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 223 EWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp HHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred ccccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEe
Confidence 8766555 6777765544336788999999999999997653
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.42 E-value=4.8e-14 Score=112.45 Aligned_cols=110 Identities=12% Similarity=0.171 Sum_probs=85.7
Q ss_pred HhcccCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCCc----------------EEEcCCCCCCCCCCcee
Q 028410 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPL----------------VSRADPHNLPFFDEAFD 150 (209)
Q Consensus 89 ~~~~~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~~----------------~~~~d~~~~~~~~~~fD 150 (209)
.....++++.+|||+|||+|..+..+++. +.++|+++|+++++++ +...|+.. .++...||
T Consensus 96 i~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-~~~~~~~D 174 (266)
T d1o54a_ 96 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-GFDEKDVD 174 (266)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-CCSCCSEE
T ss_pred HHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc-ccccccee
Confidence 33447899999999999999999999983 4679999999998553 33444322 35577899
Q ss_pred eEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 151 ~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
.|+.. ..+|..++.++.++|||||++++.+. ...+...+.+.++..+|.
T Consensus 175 ~V~~d----~p~p~~~l~~~~~~LKpGG~lv~~~P--~~~Qv~~~~~~l~~~gF~ 223 (266)
T d1o54a_ 175 ALFLD----VPDPWNYIDKCWEALKGGGRFATVCP--TTNQVQETLKKLQELPFI 223 (266)
T ss_dssp EEEEC----CSCGGGTHHHHHHHEEEEEEEEEEES--SHHHHHHHHHHHHHSSEE
T ss_pred eeEec----CCCHHHHHHHHHhhcCCCCEEEEEeC--cccHHHHHHHHHHHCCce
Confidence 88752 12789999999999999999766554 456788888888888874
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.41 E-value=1e-12 Score=104.12 Aligned_cols=110 Identities=22% Similarity=0.180 Sum_probs=83.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCC---------------CCcEEEcCCCCCCCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
.+.+..+|||||||+|..+..+++ ++..+++++|+.+. .+.+..+|..+ +.+ ..||+|++.+
T Consensus 78 d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~ 155 (256)
T d1qzza2 78 DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSF 155 (256)
T ss_dssp CCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEES
T ss_pred CCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-ccchhhhccc
Confidence 456778999999999999999998 56679999997321 23366777765 343 4699999999
Q ss_pred chhhhCH---HHHHHHHHHhcccCcEEEEEEecC---Cc---------------------ccHHHHHHHhccccc
Q 028410 157 LAEALFP---SRFVGEMERTVKIGGVCMVLMEEC---AG---------------------REIKQIVELFRTSSF 204 (209)
Q Consensus 157 ~~~~~~~---~~~l~~~~r~LkpgG~lil~~~~~---~~---------------------~~~~~~~~l~~~~~~ 204 (209)
+.|+.+. ..++++++++|||||+++++.... +. ....++.++|+..||
T Consensus 156 vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf 230 (256)
T d1qzza2 156 VLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGL 230 (256)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTE
T ss_pred cccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCC
Confidence 9888743 578999999999999988875321 10 134667788888887
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.37 E-value=4.9e-13 Score=102.52 Aligned_cols=92 Identities=15% Similarity=0.158 Sum_probs=73.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC---------------cEEEcCCCCCC--CCCCceeeEEccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP---------------LVSRADPHNLP--FFDEAFDVAFTAH 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~--~~~~~fD~i~~~~ 156 (209)
+..-.|||||||+|..+..+|+ .+...++|+|+++.++ .+..+|+.++. ++++++|.|++..
T Consensus 30 ~~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 30 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 109 (204)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc
Confidence 4456899999999999999999 5777999999998733 47899998865 7889999998864
Q ss_pred chhhh---------CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 157 LAEAL---------FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 157 ~~~~~---------~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
...+. -...+++++.++|||||.+.+.+..
T Consensus 110 PdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~ 148 (204)
T d1yzha1 110 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN 148 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred cccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECC
Confidence 32211 2378999999999999998877644
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=2.8e-13 Score=110.74 Aligned_cols=104 Identities=18% Similarity=0.210 Sum_probs=79.3
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCC--------------------------CcEEEcCCCCCC-
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL--------------------------PLVSRADPHNLP- 143 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~--------------------------~~~~~~d~~~~~- 143 (209)
.++++.+|||+|||+|..+..|++. +.++|+++|+++++ +.+..+|+.+..
T Consensus 95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~ 174 (324)
T d2b25a1 95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE 174 (324)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccc
Confidence 7799999999999999999999983 46799999998752 346788887754
Q ss_pred -CCCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccc
Q 028410 144 -FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTS 202 (209)
Q Consensus 144 -~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~ 202 (209)
+++..||.|+. ++ .+|..++.++.++|||||++++.+ +.-.|...+.+.++.+
T Consensus 175 ~~~~~~fD~V~L-D~---p~P~~~l~~~~~~LKpGG~lv~~~--P~i~Qv~~~~~~l~~~ 228 (324)
T d2b25a1 175 DIKSLTFDAVAL-DM---LNPHVTLPVFYPHLKHGGVCAVYV--VNITQVIELLDGIRTC 228 (324)
T ss_dssp ------EEEEEE-CS---SSTTTTHHHHGGGEEEEEEEEEEE--SSHHHHHHHHHHHHHH
T ss_pred ccCCCCcceEee-cC---cCHHHHHHHHHHhccCCCEEEEEe--CCHHHHHHHHHHHHHc
Confidence 45678999986 22 257889999999999999966554 4456777788877754
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=5.3e-13 Score=106.59 Aligned_cols=107 Identities=12% Similarity=0.193 Sum_probs=83.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcc--c
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTA--H 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~--~ 156 (209)
..+.+|||+|||+|..+..++. .+..+|+++|+|+.++ .++++|..+ ++++++||+|+|+ +
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPY 185 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPY 185 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCC
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-ccCCCceeEEEecchh
Confidence 5678999999999999999988 6677999999999844 477888765 3557899999997 2
Q ss_pred chhh--------h----------------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 157 LAEA--------L----------------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 157 ~~~~--------~----------------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
+... . ...+++.+..+.|+|||.+++-++ ..+.+.+.+++...||.
T Consensus 186 i~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig---~~q~~~v~~~l~~~gf~ 255 (274)
T d2b3ta1 186 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG---WQQGEAVRQAFILAGYH 255 (274)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC---SSCHHHHHHHHHHTTCT
T ss_pred hhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEEC---chHHHHHHHHHHHCCCC
Confidence 2110 0 125688899999999999887543 56788889999888874
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.34 E-value=1e-12 Score=102.09 Aligned_cols=88 Identities=19% Similarity=0.146 Sum_probs=70.1
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC-------------cEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-------------LVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~-------------~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
.++++.+|||||||+|+.+..+++.+ ++|+++|+++... .++.+|......++++||.|++.....
T Consensus 67 ~l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~ 145 (224)
T d1vbfa_ 67 DLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAP 145 (224)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBS
T ss_pred hhcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHHhhcchh
Confidence 67999999999999999999999974 5999999988733 477888766544568899999865544
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
++ | ..+.+.|||||++++.+..
T Consensus 146 ~i-p----~~l~~qLk~GGrLV~pvg~ 167 (224)
T d1vbfa_ 146 TL-L----CKPYEQLKEGGIMILPIGV 167 (224)
T ss_dssp SC-C----HHHHHTEEEEEEEEEEECS
T ss_pred hh-h----HHHHHhcCCCCEEEEEEcC
Confidence 33 2 3466889999999887654
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.28 E-value=6.6e-13 Score=111.31 Aligned_cols=95 Identities=17% Similarity=0.122 Sum_probs=69.7
Q ss_pred HHhcccCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCcE-------------------------EEcCCCC
Q 028410 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPLV-------------------------SRADPHN 141 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------------------------~~~d~~~ 141 (209)
+.+...++++.++||+|||+|..+..+|. .|.++++|+|+++.+++. ..++..+
T Consensus 208 Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~ 287 (406)
T d1u2za_ 208 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVD 287 (406)
T ss_dssp HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTT
T ss_pred HHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhh
Confidence 33344789999999999999999999998 577799999999986541 2233333
Q ss_pred CCCC---CCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEE
Q 028410 142 LPFF---DEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (209)
Q Consensus 142 ~~~~---~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil 182 (209)
.+.. -..+|+|++++..+.-+....+.++.+.|||||+++.
T Consensus 288 ~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs 331 (406)
T d1u2za_ 288 NNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIIS 331 (406)
T ss_dssp CHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred ccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEE
Confidence 2211 1356788876544333678899999999999999765
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.16 E-value=2.7e-11 Score=93.25 Aligned_cols=98 Identities=21% Similarity=0.224 Sum_probs=75.4
Q ss_pred HHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC---------------CcEEEcCCCCCCC
Q 028410 81 YAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL---------------PLVSRADPHNLPF 144 (209)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~---------------~~~~~~d~~~~~~ 144 (209)
...++..+ .++++.+|||||||+|+.+..+++. + ++|+++|.++.. +.++.+|..+...
T Consensus 67 ~a~ml~~L----~l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~ 141 (215)
T d1jg1a_ 67 VAIMLEIA----NLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFP 141 (215)
T ss_dssp HHHHHHHH----TCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred HHHHHHhh----ccCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCc
Confidence 34444444 6899999999999999999999985 5 589999999873 3488999888666
Q ss_pred CCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecCC
Q 028410 145 FDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECA 188 (209)
Q Consensus 145 ~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~ 188 (209)
+.+.||.|++.....+. |. .+.+.|||||++++.+...+
T Consensus 142 ~~~pfD~Iiv~~a~~~i-p~----~l~~qL~~gGrLv~pv~~~~ 180 (215)
T d1jg1a_ 142 PKAPYDVIIVTAGAPKI-PE----PLIEQLKIGGKLIIPVGSYH 180 (215)
T ss_dssp GGCCEEEEEECSBBSSC-CH----HHHHTEEEEEEEEEEECSSS
T ss_pred ccCcceeEEeecccccC-CH----HHHHhcCCCCEEEEEEccCC
Confidence 68999999986544433 33 35667999999988776543
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.16 E-value=8.1e-12 Score=102.07 Aligned_cols=103 Identities=16% Similarity=0.067 Sum_probs=76.8
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc----------------EEEcCCCC----CCCCCCceeeEE
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------VSRADPHN----LPFFDEAFDVAF 153 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------------~~~~d~~~----~~~~~~~fD~i~ 153 (209)
.+++.+|||+|||+|.++..++..|..+|+++|+|+.+++ ++++|+.+ ++....+||+|+
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 4789999999999999999999887779999999998543 67777654 233567999999
Q ss_pred cccc---------hhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHH
Q 028410 154 TAHL---------AEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVE 197 (209)
Q Consensus 154 ~~~~---------~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~ 197 (209)
+..- .... +..+++....++|||||.++++..... .+...+.+
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~-~~~~~f~~ 275 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH-VDLQMFKD 275 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT-SCHHHHHH
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc-CCHHHHHH
Confidence 8521 1111 346688889999999999888876653 33444444
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.15 E-value=4e-11 Score=92.88 Aligned_cols=90 Identities=20% Similarity=0.251 Sum_probs=70.4
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc----C---CceEEEecCCCCCC--------------------cEEEcCCCCCCCC
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI----G---VADVTGVELMDSLP--------------------LVSRADPHNLPFF 145 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~----~---~~~v~~vD~s~~~~--------------------~~~~~d~~~~~~~ 145 (209)
.++++.+|||||||+|+.+..+++. | ..+|+++|.+++.+ .+..+|..+...+
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~ 156 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP 156 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc
Confidence 4689999999999999999999873 2 24899999988633 4778888886667
Q ss_pred CCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 146 DEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 146 ~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
.+.||.|++.....+. | ..+.+.|||||++++.+...
T Consensus 157 ~~~fD~Iiv~~a~~~~-p----~~l~~~Lk~gG~lV~pvg~~ 193 (223)
T d1r18a_ 157 NAPYNAIHVGAAAPDT-P----TELINQLASGGRLIVPVGPD 193 (223)
T ss_dssp GCSEEEEEECSCBSSC-C----HHHHHTEEEEEEEEEEESCS
T ss_pred ccceeeEEEEeechhc-h----HHHHHhcCCCcEEEEEEecC
Confidence 8899999997554433 2 34678999999998877643
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.13 E-value=4.8e-11 Score=94.47 Aligned_cols=107 Identities=14% Similarity=0.126 Sum_probs=78.8
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcccc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
.+++.+|||+|||+|.++..+++.|..+|+++|+|+.++ .++++|+.+++. .+.||.|+++..
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECCC
Confidence 388999999999999999999988767999999999843 378899988763 678999998643
Q ss_pred hhhhCHHHHHHHHHHhcccCcEEEEEEecC----CcccHHHHHHHhccccc
Q 028410 158 AEALFPSRFVGEMERTVKIGGVCMVLMEEC----AGREIKQIVELFRTSSF 204 (209)
Q Consensus 158 ~~~~~~~~~l~~~~r~LkpgG~lil~~~~~----~~~~~~~~~~l~~~~~~ 204 (209)
.. ...++.+..+.|||||.+.+..... .......+.++.+..++
T Consensus 184 ~~---~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~ 231 (260)
T d2frna1 184 VR---THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGY 231 (260)
T ss_dssp SS---GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTC
T ss_pred Cc---hHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCC
Confidence 22 3456778889999999976543221 12234445555554444
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.08 E-value=4.4e-10 Score=87.99 Aligned_cols=89 Identities=12% Similarity=0.067 Sum_probs=72.0
Q ss_pred CCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCC--------CCCcEEEcCCCCCCCCCCceeeEEcccchhhhC--
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMD--------SLPLVSRADPHNLPFFDEAFDVAFTAHLAEALF-- 162 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~--------~~~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~-- 162 (209)
.....+|||||||+|..+..+++ .|..+++..|+.+ ..++++.+|+.+ +.| ..|++++.++.|..+
T Consensus 79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~-~~p--~~D~~~l~~vLh~~~de 155 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFA-SVP--QGDAMILKAVCHNWSDE 155 (244)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCC--CEEEEEEESSGGGSCHH
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCccc-ccc--cceEEEEehhhhhCCHH
Confidence 47779999999999999999988 6777999999643 244588888865 333 459999999888773
Q ss_pred -HHHHHHHHHHhcccCcEEEEEEe
Q 028410 163 -PSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 163 -~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
-.++++++++.|+|||+++++..
T Consensus 156 ~~~~iL~~~~~aL~pgg~llI~e~ 179 (244)
T d1fp1d2 156 KCIEFLSNCHKALSPNGKVIIVEF 179 (244)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEE
Confidence 36789999999999999988864
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.04 E-value=2.5e-11 Score=98.87 Aligned_cols=92 Identities=18% Similarity=0.117 Sum_probs=70.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------------EEEcCCCC----CCCCCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------VSRADPHN----LPFFDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------------~~~~d~~~----~~~~~~~fD~i~~~ 155 (209)
.++.+|||++||+|.++.+++.. ..+|+++|+|+.+++ ++++|+.+ ++...++||+|++.
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred hCCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 46899999999999999998864 459999999998553 66777655 23446799999985
Q ss_pred c---------chhhh-CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 156 H---------LAEAL-FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 156 ~---------~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
- +.... +..+++..+.++|||||.++++....
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 1 11112 34678899999999999988877654
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.03 E-value=5.3e-11 Score=86.77 Aligned_cols=92 Identities=15% Similarity=0.155 Sum_probs=67.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc----------------EEEcCCCC-CCCCCCceeeEEcccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------VSRADPHN-LPFFDEAFDVAFTAHL 157 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------------~~~~d~~~-~~~~~~~fD~i~~~~~ 157 (209)
-++.+|||+|||+|.++.+.+..|..+|+++|.++.+++ ++++|+.. ++...++||+|++..-
T Consensus 13 ~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 13 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 368899999999999999988888789999999988543 67777665 3456789999999532
Q ss_pred hhhhCHHHHHHHHH--HhcccCcEEEEEEec
Q 028410 158 AEALFPSRFVGEME--RTVKIGGVCMVLMEE 186 (209)
Q Consensus 158 ~~~~~~~~~l~~~~--r~LkpgG~lil~~~~ 186 (209)
...-.....+..+. +.|+|||.+++....
T Consensus 93 y~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~ 123 (152)
T d2esra1 93 YAKETIVATIEALAAKNLLSEQVMVVCETDK 123 (152)
T ss_dssp SHHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred hccchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence 11112244454443 579999998776543
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.03 E-value=2.5e-10 Score=86.39 Aligned_cols=92 Identities=14% Similarity=0.119 Sum_probs=66.1
Q ss_pred CCCCeEEEEcCCCChhHHHHH----hc-----CCceEEEecCCCCCCc--------------------------------
Q 028410 95 FNHSKVLCVSAGAGHEVMAFN----SI-----GVADVTGVELMDSLPL-------------------------------- 133 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la----~~-----~~~~v~~vD~s~~~~~-------------------------------- 133 (209)
.+..+|+++|||+|.....+| +. ..-+|+|+|+++..++
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 566799999999998654443 21 1237999999988442
Q ss_pred --------------EEEcCCCCC-CCCCCceeeEEcccchhhhCH---HHHHHHHHHhcccCcEEEEEEec
Q 028410 134 --------------VSRADPHNL-PFFDEAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 134 --------------~~~~d~~~~-~~~~~~fD~i~~~~~~~~~~~---~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+...+.... +.+.+.||+|+|.+++.++++ .++++.+++.|+|||.+++-..+
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~sE 173 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSE 173 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEecCc
Confidence 122222222 234578999999999999955 68999999999999997665444
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.99 E-value=2.2e-10 Score=93.05 Aligned_cols=94 Identities=11% Similarity=0.040 Sum_probs=72.6
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-----------------EEEcCCCCC----CCCCCceeeE
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-----------------VSRADPHNL----PFFDEAFDVA 152 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-----------------~~~~d~~~~----~~~~~~fD~i 152 (209)
..++.+|||++||+|.++.+++..|..+|+++|+|+.+++ ++++|+.+. .-..++||+|
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 3689999999999999999988877779999999998443 677776542 2235789999
Q ss_pred Ecc---------cchhhh-CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 153 FTA---------HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 153 ~~~---------~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
++. ...... +..+++....++|+|||.+++++...
T Consensus 222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 985 112222 34678899999999999998887764
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.94 E-value=3.6e-10 Score=85.36 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=81.4
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc--------------EEEcCCCCCC-----CCCCceeeE
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL--------------VSRADPHNLP-----FFDEAFDVA 152 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~--------------~~~~d~~~~~-----~~~~~fD~i 152 (209)
...++..++|++||+|..+..+.+ .+.++|+|+|.++.+++ ++++++.++. +..++||.|
T Consensus 20 ~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgI 99 (192)
T d1m6ya2 20 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGI 99 (192)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEE
T ss_pred CCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCccee
Confidence 568899999999999999999988 56689999999998664 6677766542 446889999
Q ss_pred Ecc-cc--------hhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccc
Q 028410 153 FTA-HL--------AEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSS 203 (209)
Q Consensus 153 ~~~-~~--------~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~ 203 (209)
+.. .+ ...+ +..+.+..+.++|+|||.++++...+. +.+.+...|+...
T Consensus 100 l~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~--Edr~vk~~f~~~~ 158 (192)
T d1m6ya2 100 LMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSL--EDRIVKETFRNSK 158 (192)
T ss_dssp EEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHH--HHHHHHHHHHHCS
T ss_pred eeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccH--HHHHHHHHHhhcc
Confidence 764 11 1122 457889999999999999888776542 3355666666443
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.93 E-value=3.8e-10 Score=89.57 Aligned_cols=108 Identities=11% Similarity=0.165 Sum_probs=76.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc----------------EEEcCCCCC-CCCCCceeeEEcc--
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------VSRADPHNL-PFFDEAFDVAFTA-- 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------------~~~~d~~~~-~~~~~~fD~i~~~-- 155 (209)
.+..+++|+|||+|..+..+++.+..+|+++|+|+.+++ +..+|..+. +...++||+|+++
T Consensus 109 ~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPP 188 (271)
T d1nv8a_ 109 YGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 188 (271)
T ss_dssp HTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred ccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccc
Confidence 345689999999999999998877779999999998553 456666553 2334799999997
Q ss_pred cchhh------h--CH----------HHHHHH-HHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 156 HLAEA------L--FP----------SRFVGE-MERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 156 ~~~~~------~--~~----------~~~l~~-~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
++... . +| ..++++ +.+.|+|||.+++-++ ..+...+.++|...+|.
T Consensus 189 YI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig---~~Q~~~v~~l~~~~g~~ 254 (271)
T d1nv8a_ 189 YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG---EDQVEELKKIVSDTVFL 254 (271)
T ss_dssp CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC---TTCHHHHTTTSTTCEEE
T ss_pred ccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC---HHHHHHHHHHHHhCCEE
Confidence 11110 0 12 223333 4578999998766554 56788888999988874
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.93 E-value=4.9e-10 Score=90.38 Aligned_cols=104 Identities=15% Similarity=0.083 Sum_probs=74.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-----------------EEEcCCCCC----CCCCCceeeEE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-----------------VSRADPHNL----PFFDEAFDVAF 153 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-----------------~~~~d~~~~----~~~~~~fD~i~ 153 (209)
.++.+|||++||+|.++.+++..|. +|++||.|+.+++ ++++|+.+. ....++||+|+
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Ii 209 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 209 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred cCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEE
Confidence 6788999999999999999998876 8999999988443 666766542 12357899999
Q ss_pred cc---------cchhhh--CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHh
Q 028410 154 TA---------HLAEAL--FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELF 199 (209)
Q Consensus 154 ~~---------~~~~~~--~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~ 199 (209)
+. .....+ +...++..+.++|+|||.+++++..+...+...+.+++
T Consensus 210 lDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~ 266 (309)
T d2igta1 210 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELM 266 (309)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHH
T ss_pred ECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHH
Confidence 85 111222 33567778889999999877777665555544444443
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=1.6e-08 Score=75.39 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=78.9
Q ss_pred cCchhHhhHhHHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCC----CCcEEEcCCCCC
Q 028410 69 WSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----LPLVSRADPHNL 142 (209)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~----~~~~~~~d~~~~ 142 (209)
|++|+|.+..+.... ...++++.+|||+||++|.+++.+.+. +.+.++++|+.+. ...++++|+.+.
T Consensus 2 yrsRaafKL~EI~~k-------~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~~~~~~~d~~~~ 74 (180)
T d1ej0a_ 2 LRSRAWFKLDEIQQS-------DKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDE 74 (180)
T ss_dssp CSCHHHHHHHHHHHH-------HCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSH
T ss_pred chhHHHHHHHHHHHH-------hCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccccccCCceEeecccccc
Confidence 456666655543322 235689999999999999999998873 4579999999875 234788988763
Q ss_pred C--------CCCCceeeEEcccc---------hhhh--C-HHHHHHHHHHhcccCcEEEEEEecC
Q 028410 143 P--------FFDEAFDVAFTAHL---------AEAL--F-PSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 143 ~--------~~~~~fD~i~~~~~---------~~~~--~-~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
. .....+|+|++... .+.. + ....+.-+.++||+||.+++=+...
T Consensus 75 ~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g 139 (180)
T d1ej0a_ 75 LVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred hhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC
Confidence 2 34578999999521 1111 1 1456677789999999988776653
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.85 E-value=1.1e-09 Score=82.86 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=49.6
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------cEEEcCCCCCCCCCCceeeEEcc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------LVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.+.+|||+|||+|.++..++..|..+|+++|+++.++ +++++|+.+++ ++||+|+++
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~N 114 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMN 114 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEEC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccccccEEEEehhhcC---CcceEEEeC
Confidence 5889999999999999988888877999999998854 58888887764 689999997
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=7.6e-09 Score=81.09 Aligned_cols=110 Identities=13% Similarity=0.094 Sum_probs=76.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc----------------EEEcCCCCC------CCCCCceee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL----------------VSRADPHNL------PFFDEAFDV 151 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~----------------~~~~d~~~~------~~~~~~fD~ 151 (209)
.+..++||+|||+|..+..++. .+..+++|+|+++++++ +...+.... ...+++||+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 4457999999999999999988 44569999999998554 333333221 123578999
Q ss_pred EEcc--cchhh---------------------------------h-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHH
Q 028410 152 AFTA--HLAEA---------------------------------L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQI 195 (209)
Q Consensus 152 i~~~--~~~~~---------------------------------~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~ 195 (209)
|+|+ ++... . +..+++++..+.+++.|++...+.. ..+...+
T Consensus 140 ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~--~~~l~~i 217 (250)
T d2h00a1 140 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGK--KCSLAPL 217 (250)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESS--TTSHHHH
T ss_pred EEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecc--hhhHHHH
Confidence 9997 11100 0 1244667778889999987666653 4567778
Q ss_pred HHHhccccccc
Q 028410 196 VELFRTSSFTE 206 (209)
Q Consensus 196 ~~l~~~~~~~~ 206 (209)
.+.+++.++.+
T Consensus 218 ~~~L~~~g~~~ 228 (250)
T d2h00a1 218 KEELRIQGVPK 228 (250)
T ss_dssp HHHHHHTTCSE
T ss_pred HHHHHHcCCCe
Confidence 88888887743
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=2.5e-09 Score=80.00 Aligned_cols=91 Identities=15% Similarity=0.065 Sum_probs=67.7
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------------EEEcCCCC-CCCCCCceeeEEcccchh
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------VSRADPHN-LPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------------~~~~d~~~-~~~~~~~fD~i~~~~~~~ 159 (209)
++.+|||++||+|..+.+.+..|...|+.||.++..++ ++.+|+.+ +...+.+||+|++.--..
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence 57899999999999999999888889999999988543 55566544 233567899999963222
Q ss_pred hhCHHHHHHHHHH--hcccCcEEEEEEec
Q 028410 160 ALFPSRFVGEMER--TVKIGGVCMVLMEE 186 (209)
Q Consensus 160 ~~~~~~~l~~~~r--~LkpgG~lil~~~~ 186 (209)
.-.....+..+.+ .|+++|.+++....
T Consensus 123 ~~~~~~~l~~l~~~~~L~~~~iIiiE~~~ 151 (183)
T d2fpoa1 123 RGLLEETINLLEDNGWLADEALIYVESEV 151 (183)
T ss_dssp TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred cchHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 2234566666654 59999998876543
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.77 E-value=6.8e-08 Score=73.37 Aligned_cols=109 Identities=19% Similarity=0.122 Sum_probs=76.5
Q ss_pred cccCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCCc------EEEcCCCCCCCCCCceeeEEcccchh---
Q 028410 91 KSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPL------VSRADPHNLPFFDEAFDVAFTAHLAE--- 159 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~~------~~~~d~~~~~~~~~~fD~i~~~~~~~--- 159 (209)
.....++.+|||.|||+|.+...+.+. ....++|+|+++.... .+.+|..... ...+||+++++.-..
T Consensus 14 l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~~~~~~~~~~~~~-~~~~fd~ii~npP~~~~~ 92 (223)
T d2ih2a1 14 LAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWE-PGEAFDLILGNPPYGIVG 92 (223)
T ss_dssp HCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCC-CSSCEEEEEECCCCCCBS
T ss_pred hcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcccceeeeeehhccc-cccccceecccCcccccc
Confidence 345678899999999999998888762 3357999999998664 4566665544 357899999862110
Q ss_pred --------------------------hhC-HHHHHHHHHHhcccCcEEEEEEecC--CcccHHHHHHHhc
Q 028410 160 --------------------------ALF-PSRFVGEMERTVKIGGVCMVLMEEC--AGREIKQIVELFR 200 (209)
Q Consensus 160 --------------------------~~~-~~~~l~~~~r~LkpgG~lil~~~~~--~~~~~~~~~~l~~ 200 (209)
..+ ...++....+.|||||++.+++... .......+++.+-
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l~ 162 (223)
T d2ih2a1 93 EASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLA 162 (223)
T ss_dssp CTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHH
T ss_pred ccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHHHH
Confidence 001 1456788899999999999998764 3334455555433
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.76 E-value=4.4e-08 Score=76.27 Aligned_cols=87 Identities=13% Similarity=0.062 Sum_probs=67.6
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCC--------CCcEEEcCCCCCCCCCCceeeEEcccchhhh---C
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDS--------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL---F 162 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~--------~~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~---~ 162 (209)
....+|+|||||+|..+..+++ .|..+++..|+.+. .+.+..+|+.+ +.|. .|+.+..++.+.. +
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~~~d~~ 156 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFV-SIPK--ADAVFMKWICHDWSDEH 156 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTT-CCCC--CSCEECSSSSTTSCHHH
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccc-cCCC--cceEEEEEEeecCCHHH
Confidence 5568999999999999999998 67779999998543 23477888765 3343 4666676666655 3
Q ss_pred HHHHHHHHHHhcccCcEEEEEE
Q 028410 163 PSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 163 ~~~~l~~~~r~LkpgG~lil~~ 184 (209)
...+++++++.|+|||+++++.
T Consensus 157 ~~~iL~~~~~al~pgg~~li~d 178 (243)
T d1kyza2 157 CLKFLKNCYEALPDNGKVIVAE 178 (243)
T ss_dssp HHHHHHHHHHHCCSSSCEEEEE
T ss_pred HHHHHHHHHHhcCCCceEEEEE
Confidence 5889999999999999988874
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.76 E-value=3.4e-09 Score=80.49 Aligned_cols=57 Identities=19% Similarity=0.170 Sum_probs=47.8
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.+.+|||+|||+|..+..++..|..+|+|+|+++.+++ +..+|..++ +++||+|+++
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~n 116 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMN 116 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEEC
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEc
Confidence 57899999999999999988887779999999987443 667776654 5689999997
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.76 E-value=2.1e-09 Score=82.48 Aligned_cols=88 Identities=18% Similarity=0.292 Sum_probs=64.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-c-CCceEEEecCCCCC----------------CcEEEcCCCCC-C-----CCCCcee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-I-GVADVTGVELMDSL----------------PLVSRADPHNL-P-----FFDEAFD 150 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~-~~~~v~~vD~s~~~----------------~~~~~~d~~~~-~-----~~~~~fD 150 (209)
.++.+|||+|||+|..+..+++ . ..++++++|+++.+ ++++.+|..+. + +..++||
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence 4567999999999999999998 3 34799999999873 34778887652 2 3457899
Q ss_pred eEEcccchhhhCHHHHHHHHHHhcccCcEEEE
Q 028410 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (209)
Q Consensus 151 ~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil 182 (209)
+|+..+-...-.....+.+..+.|||||++++
T Consensus 135 ~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~ 166 (214)
T d2cl5a1 135 MVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLA 166 (214)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred eeeecccccccccHHHHHHHhCccCCCcEEEE
Confidence 99986432222234456778899999997543
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=2.2e-08 Score=76.83 Aligned_cols=87 Identities=17% Similarity=0.091 Sum_probs=66.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-c-CCceEEEecCCCCC----------------CcEEEcCCCCC-C-----CCCCcee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-I-GVADVTGVELMDSL----------------PLVSRADPHNL-P-----FFDEAFD 150 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~-~~~~v~~vD~s~~~----------------~~~~~~d~~~~-~-----~~~~~fD 150 (209)
.+..+|||+|||+|+.+.++++ . ..++++++|.++.. ++++.+|+.+. + ..+++||
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD 137 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 137 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence 6788999999999999999998 3 35799999999983 33667776441 1 2467899
Q ss_pred eEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 151 ~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
+|+..+-- -.....+..+.+.|+|||.+++-
T Consensus 138 ~ifiD~dk--~~y~~~~~~~~~lL~~GGvii~D 168 (219)
T d2avda1 138 VAVVDADK--ENCSAYYERCLQLLRPGGILAVL 168 (219)
T ss_dssp EEEECSCS--TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEeCCH--HHHHHHHHHHHHHhcCCcEEEEe
Confidence 99985321 14566778889999999997664
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.73 E-value=2.4e-09 Score=79.28 Aligned_cols=91 Identities=22% Similarity=0.160 Sum_probs=61.7
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCC----CCCCCCceeeEEcc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHN----LPFFDEAFDVAFTA 155 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~----~~~~~~~fD~i~~~ 155 (209)
+.++.+|||+|||+|..+.+.+..|. +++++|.++.+++ +...+... ......+||+|+++
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D 117 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred ccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc
Confidence 37788999999999999999888886 8999999999664 22222211 12345789999985
Q ss_pred cchhhhCHHHHHHHH--HHhcccCcEEEEEEec
Q 028410 156 HLAEALFPSRFVGEM--ERTVKIGGVCMVLMEE 186 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~--~r~LkpgG~lil~~~~ 186 (209)
--.. .+..+.+.++ ...|+|||.+++....
T Consensus 118 PPY~-~~~~~~l~~l~~~~ll~~~g~ivie~~~ 149 (171)
T d1ws6a1 118 PPYA-MDLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp CCTT-SCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred cccc-cCHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence 2111 1222334433 3579999997776543
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.65 E-value=4.3e-08 Score=76.38 Aligned_cols=87 Identities=9% Similarity=0.025 Sum_probs=69.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCC--------CCCcEEEcCCCCCCCCCCceeeEEcccchhhhCH--
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMD--------SLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFP-- 163 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~--------~~~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~-- 163 (209)
....+|+|||||+|..+..+++ ++..+++..|..+ ..+.++.+|+.+. .+ .+|++++.++.|..+.
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~-~p--~aD~~~l~~vLHdw~d~~ 155 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTS-IP--NADAVLLKYILHNWTDKD 155 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTC-CC--CCSEEEEESCGGGSCHHH
T ss_pred cCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccC-CC--CCcEEEEEeecccCChHH
Confidence 5567899999999999999988 6777999999643 2445888998763 22 5799999999887733
Q ss_pred -HHHHHHHHHhcccC---cEEEEEE
Q 028410 164 -SRFVGEMERTVKIG---GVCMVLM 184 (209)
Q Consensus 164 -~~~l~~~~r~Lkpg---G~lil~~ 184 (209)
.++|+++++.|+|| |+++++.
T Consensus 156 ~~~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 156 CLRILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp HHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred HHHHHHHHHHHcCcccCCcEEEEEE
Confidence 67899999999998 7777764
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.65 E-value=8.5e-09 Score=77.00 Aligned_cols=93 Identities=14% Similarity=0.053 Sum_probs=69.2
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc----------------EEEcCCCCC----CCCCCceeeEE
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------VSRADPHNL----PFFDEAFDVAF 153 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------------~~~~d~~~~----~~~~~~fD~i~ 153 (209)
..++.+|||++||+|.++.+.+..|...|+.+|.++.+++ ++++|+.+. .-...+||+|+
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence 3578999999999999999999998889999999988443 667776542 12356899999
Q ss_pred cccchhhhCHHHHHHHHHH--hcccCcEEEEEEec
Q 028410 154 TAHLAEALFPSRFVGEMER--TVKIGGVCMVLMEE 186 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r--~LkpgG~lil~~~~ 186 (209)
+.-=...-+....+..+.+ .|+|||.+++-...
T Consensus 119 lDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E~~~ 153 (182)
T d2fhpa1 119 LDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDK 153 (182)
T ss_dssp ECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred echhhhhhHHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence 9632222245667777754 69999987765544
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.60 E-value=1.2e-08 Score=81.11 Aligned_cols=94 Identities=18% Similarity=0.249 Sum_probs=69.3
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-------------------------EEEcCCCCCCCCCCc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-------------------------VSRADPHNLPFFDEA 148 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-------------------------~~~~d~~~~~~~~~~ 148 (209)
..++.+||.+|+|.|..+..+.+.+..+|+.+|+++..++ ++.+|+.+.--.+++
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 3678999999999999999988876679999999987543 344444332113578
Q ss_pred eeeEEcccch-----hhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 149 FDVAFTAHLA-----EALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 149 fD~i~~~~~~-----~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
||+|++.-.. ..+...++++.+.+.|+|||.++.-...+
T Consensus 150 yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~ 193 (276)
T d1mjfa_ 150 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSV 193 (276)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred CCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCc
Confidence 9999985222 22244789999999999999987766544
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.58 E-value=1.6e-07 Score=71.30 Aligned_cols=88 Identities=14% Similarity=0.118 Sum_probs=71.4
Q ss_pred CCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCC---------------CCcEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
++.+++|+|+|.|..+..+|- .+..+++.+|.+.+ .+.++...+++.. .+.+||+|++..+..
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA~~~ 143 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAFAS 143 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCSSS
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhhhcC
Confidence 456999999999999999997 56679999999877 2346777888765 366899999977654
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
...++.-..+.+++||.+++.-+..
T Consensus 144 ---~~~ll~~~~~~l~~~g~~~~~KG~~ 168 (207)
T d1jsxa_ 144 ---LNDMVSWCHHLPGEQGRFYALKGQM 168 (207)
T ss_dssp ---HHHHHHHHTTSEEEEEEEEEEESSC
T ss_pred ---HHHHHHHHHHhcCCCcEEEEECCCC
Confidence 7788888899999999987776543
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.56 E-value=9.9e-08 Score=74.30 Aligned_cols=71 Identities=20% Similarity=0.173 Sum_probs=57.4
Q ss_pred HhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-------------EEEcCCCCCCCCCCceeeEEcc
Q 028410 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-------------VSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 89 ~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-------------~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
++.....++..|||||||+|..+..+++.+. +|+++|+++.+++ ++.+|+.+.++++..++.|++
T Consensus 22 v~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~~~vv~- 99 (245)
T d1yuba_ 22 IKQLNLKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRYKIVG- 99 (245)
T ss_dssp HHHCCCCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEEEEEE-
T ss_pred HHhcCCCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccceeeeEee-
Confidence 3334668899999999999999999999864 9999999998654 778999998888777777776
Q ss_pred cchhhh
Q 028410 156 HLAEAL 161 (209)
Q Consensus 156 ~~~~~~ 161 (209)
++..++
T Consensus 100 NLPY~I 105 (245)
T d1yuba_ 100 NIPYHL 105 (245)
T ss_dssp ECCSSS
T ss_pred eeehhh
Confidence 444444
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.53 E-value=2.6e-08 Score=80.40 Aligned_cols=92 Identities=20% Similarity=0.213 Sum_probs=69.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc--------------------EEEcCCCCC-CCCCCceeeE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL--------------------VSRADPHNL-PFFDEAFDVA 152 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~--------------------~~~~d~~~~-~~~~~~fD~i 152 (209)
.+..+||.+|.|.|..+.++.+. +..+|+++|+++..++ ++.+|+.+. .-.+++||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 67789999999999999999885 5679999999998553 445555441 2235789999
Q ss_pred Ecccc--------hhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 153 FTAHL--------AEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 153 ~~~~~--------~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+..-. ...+...++++.+.+.|+|||.++.-...
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s 197 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCC
Confidence 97421 11234588999999999999998776544
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.53 E-value=1.1e-07 Score=73.58 Aligned_cols=106 Identities=18% Similarity=0.154 Sum_probs=79.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC---------------cEEEcCCCCCCC---CCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP---------------LVSRADPHNLPF---FDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~---~~~~fD~i~~~ 155 (209)
.+..+++|+|+|.|.-+..++- .+..+++.+|.+.+.+ .++...++++.. ..++||+|++.
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence 3578999999999999999987 6777999999988733 245555554332 24689999997
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccc
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSS 203 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~ 203 (209)
.+.. ...++.-....+++||.+++.=+.....+.....+.+...+
T Consensus 149 Ava~---l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~ 193 (239)
T d1xdza_ 149 AVAR---LSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLG 193 (239)
T ss_dssp CCSC---HHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTT
T ss_pred hhhC---HHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcC
Confidence 7665 88889999999999999877777655555666665555443
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.44 E-value=9.1e-08 Score=76.42 Aligned_cols=93 Identities=22% Similarity=0.211 Sum_probs=68.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc-------------------EEEcCCCC-CCCCCCceeeEE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL-------------------VSRADPHN-LPFFDEAFDVAF 153 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~-------------------~~~~d~~~-~~~~~~~fD~i~ 153 (209)
.+..+||-+|.|.|..+.++.+. +..+|+++|+++..++ ++.+|+.. +.-.+++||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 66789999999999999999985 5678999999998554 44555433 222357899999
Q ss_pred cccch------hhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 154 TAHLA------EALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 154 ~~~~~------~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
+.-.. ..+...++++.+++.|+|||.++.-...+
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp 207 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP 207 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCCh
Confidence 85222 22345899999999999999976665543
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.41 E-value=3e-07 Score=74.07 Aligned_cols=112 Identities=9% Similarity=0.070 Sum_probs=79.4
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
..+++.+|||++||+|.-+..++.. +.+.+++.|.++..+ .....|...++..+..||.|+..
T Consensus 113 ~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvD 192 (313)
T d1ixka_ 113 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLD 192 (313)
T ss_dssp CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred cCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEc
Confidence 3588999999999999999999873 456899999998732 23445555555567889999973
Q ss_pred ------cch-------hh-----h-----CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHH-Hhccccc
Q 028410 156 ------HLA-------EA-----L-----FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVE-LFRTSSF 204 (209)
Q Consensus 156 ------~~~-------~~-----~-----~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~-l~~~~~~ 204 (209)
.+. .. + -..+++.+..+.|||||.++.++.+....+.....+ ++++.++
T Consensus 193 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~~ 265 (313)
T d1ixka_ 193 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDV 265 (313)
T ss_dssp CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSE
T ss_pred cccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCCC
Confidence 110 00 0 126688999999999999999998876555554444 5555443
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.40 E-value=1.9e-07 Score=74.47 Aligned_cols=93 Identities=19% Similarity=0.269 Sum_probs=70.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc-------------------EEEcCCCCC--CCCCCceeeE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL-------------------VSRADPHNL--PFFDEAFDVA 152 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~-------------------~~~~d~~~~--~~~~~~fD~i 152 (209)
.+..+||-+|-|.|..+.++.+. +..+++.+|++++.++ ++.+|..+. ..++++||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 56789999999999999999985 6679999999988543 555554431 2345789999
Q ss_pred Eccc-----chhhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 153 FTAH-----LAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 153 ~~~~-----~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
+..- ....+...++++.+++.|+|||.++.-....
T Consensus 159 i~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 198 (290)
T d1xj5a_ 159 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL 198 (290)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 9842 2233355899999999999999977766544
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.40 E-value=3.2e-07 Score=70.53 Aligned_cols=87 Identities=13% Similarity=0.104 Sum_probs=66.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cC-CceEEEecCCCCC----------------CcEEEcCCCCC-C------CCCCce
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IG-VADVTGVELMDSL----------------PLVSRADPHNL-P------FFDEAF 149 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~-~~~v~~vD~s~~~----------------~~~~~~d~~~~-~------~~~~~f 149 (209)
.+..+|||+|+++|+.+..+++ .+ .++++++|.+++. +.++.+++.+. + ..+++|
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 5788999999999999999997 43 5799999999973 23666776541 1 135689
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
|+||..+ .+......+..+.+.|+|||.+++-
T Consensus 138 D~iFiDa--~k~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 138 DFIFVDA--DKDNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp SEEEECS--CSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred eEEEecc--chhhhHHHHHHHHhhcCCCcEEEEc
Confidence 9999853 1124567788889999999997654
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=1e-07 Score=75.84 Aligned_cols=94 Identities=26% Similarity=0.268 Sum_probs=68.6
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc-------------------EEEcCCCC-CCCCCCceeeE
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL-------------------VSRADPHN-LPFFDEAFDVA 152 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~-------------------~~~~d~~~-~~~~~~~fD~i 152 (209)
...+.+||-+|.|.|..+.++.+. +..+++.+|+++..++ ++.+|+.. +.-.+++||+|
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 155 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence 366789999999999999999985 5679999999987443 45555433 11235789999
Q ss_pred Ecccc-----hhhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 153 FTAHL-----AEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 153 ~~~~~-----~~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
++.-. ...+...++++.+.+.|+|||.++.-....
T Consensus 156 i~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 195 (285)
T d2o07a1 156 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQ 195 (285)
T ss_dssp EEECC-----------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccch
Confidence 98522 223345789999999999999987776554
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.37 E-value=4.4e-07 Score=73.20 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=74.1
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc------CCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEE
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI------GVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAF 153 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~------~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~ 153 (209)
.+++.+|||.|||+|.+...+.+. ...+++|+|+++.++. ...+|..... +..+||+|+
T Consensus 115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~vi 193 (328)
T d2f8la1 115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL-LVDPVDVVI 193 (328)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC-CCCCEEEEE
T ss_pred CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccc-ccccccccc
Confidence 467789999999999999887641 2347999999987442 4555554432 467899999
Q ss_pred cccchhh------------------hC-HHHHHHHHHHhcccCcEEEEEEecC--CcccHHHHHH-Hhccccc
Q 028410 154 TAHLAEA------------------LF-PSRFVGEMERTVKIGGVCMVLMEEC--AGREIKQIVE-LFRTSSF 204 (209)
Q Consensus 154 ~~~~~~~------------------~~-~~~~l~~~~r~LkpgG~lil~~~~~--~~~~~~~~~~-l~~~~~~ 204 (209)
++--... .+ ...++..+.+.|+|||+++++++.. .......+++ +++++.+
T Consensus 194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~~i 266 (328)
T d2f8la1 194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHI 266 (328)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEE
T ss_pred cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCCcE
Confidence 9721100 00 1347899999999999999988764 2334445555 3444433
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.36 E-value=1.6e-07 Score=74.33 Aligned_cols=92 Identities=21% Similarity=0.265 Sum_probs=69.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc-------------------EEEcCCCC-CCCCCCceeeEE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL-------------------VSRADPHN-LPFFDEAFDVAF 153 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~-------------------~~~~d~~~-~~~~~~~fD~i~ 153 (209)
.+..+||-+|-|.|..+.++.+. +..+|+.+|+++..++ ++.+|+.. +.-.+++||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 66789999999999999999985 6679999999998543 45555443 222457899999
Q ss_pred ccc-----chhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 154 TAH-----LAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 154 ~~~-----~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
..- ....+...++++.+.+.|+|||.++.-...
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s 191 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence 852 222235689999999999999997665543
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.35 E-value=4.1e-08 Score=73.22 Aligned_cols=92 Identities=21% Similarity=0.117 Sum_probs=64.7
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-----------------EEEcCCCC---CCCCCCceeeEEcc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-----------------VSRADPHN---LPFFDEAFDVAFTA 155 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-----------------~~~~d~~~---~~~~~~~fD~i~~~ 155 (209)
++.+|||+.||||.++.+...+|..+|+.||.+...+. +...|..+ ......+||+|++.
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 57799999999999999999999899999999987443 22233221 22345679999996
Q ss_pred cchhhhCHHHHHHHHH--HhcccCcEEEEEEecC
Q 028410 156 HLAEALFPSRFVGEME--RTVKIGGVCMVLMEEC 187 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~--r~LkpgG~lil~~~~~ 187 (209)
-=...-.....+..+. ..|+++|.+++-....
T Consensus 123 PPY~~~~~~~~l~~l~~~~~L~~~~liiiE~~~~ 156 (183)
T d2ifta1 123 PPFHFNLAEQAISLLCENNWLKPNALIYVETEKD 156 (183)
T ss_dssp CCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred hhHhhhhHHHHHHHHHHhCCcCCCcEEEEEecCC
Confidence 3222112355666665 4699999988876554
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.33 E-value=1.2e-07 Score=76.06 Aligned_cols=93 Identities=23% Similarity=0.239 Sum_probs=64.5
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc-------------------EEEcCCCC-CCCCCCceeeEE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL-------------------VSRADPHN-LPFFDEAFDVAF 153 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~-------------------~~~~d~~~-~~~~~~~fD~i~ 153 (209)
.+..+||-+|.|.|..+.++.+. +..+|+.+|+++..++ ++.+|... +.-.+++||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 66789999999999999999985 5579999999998554 23333322 112357899999
Q ss_pred cccc-----hhhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 154 TAHL-----AEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 154 ~~~~-----~~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
..-. ...+...++++.+.+.|+|||.++.-....
T Consensus 185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~ 223 (312)
T d2b2ca1 185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV 223 (312)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence 8522 223355889999999999999976665443
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.31 E-value=1.4e-06 Score=68.98 Aligned_cols=109 Identities=15% Similarity=0.122 Sum_probs=75.3
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc--------------EEEcCCCCC--CCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL--------------VSRADPHNL--PFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~--------------~~~~d~~~~--~~~~~~fD~i~~~ 155 (209)
...++.+|||+++|+|.-+..+++. ..+.|+++|+++..+. ....+.... ....+.||.|+..
T Consensus 99 ~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~D 178 (284)
T d1sqga2 99 APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLD 178 (284)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred CccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEe
Confidence 4588999999999999999999984 3478999999998542 222221111 1245789999974
Q ss_pred ------cch-------hhh----------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHH-Hhcc
Q 028410 156 ------HLA-------EAL----------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVE-LFRT 201 (209)
Q Consensus 156 ------~~~-------~~~----------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~-l~~~ 201 (209)
.+. ... -..+++.+..+.|||||+++.++.+....+.....+ ++++
T Consensus 179 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~ 248 (284)
T d1sqga2 179 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQR 248 (284)
T ss_dssp CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred ccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHh
Confidence 111 000 126788889999999999999998876555555444 4443
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.30 E-value=3.2e-07 Score=70.88 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=57.6
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-------------CcEEEcCCCCCCCCCCcee
Q 028410 84 FFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------PLVSRADPHNLPFFDEAFD 150 (209)
Q Consensus 84 ~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~-------------~~~~~~d~~~~~~~~~~fD 150 (209)
.+...+....+.++.+|||||||+|..+..+++.+. +|+++|+++.+ +.++.+|+.+.+++.....
T Consensus 9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~ 87 (235)
T d1qama_ 9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSY 87 (235)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCC
T ss_pred HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccccc
Confidence 344555556678999999999999999999999864 99999998873 3488999998887655444
Q ss_pred eEEcccchhhh
Q 028410 151 VAFTAHLAEAL 161 (209)
Q Consensus 151 ~i~~~~~~~~~ 161 (209)
.|++ ++...+
T Consensus 88 ~vv~-NLPYnI 97 (235)
T d1qama_ 88 KIFG-NIPYNI 97 (235)
T ss_dssp EEEE-ECCGGG
T ss_pred eeee-eehhhh
Confidence 4554 454444
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.29 E-value=4.9e-07 Score=67.12 Aligned_cols=109 Identities=14% Similarity=0.130 Sum_probs=79.4
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-----------EEEcCCCCCC-----CCCCceeeEEcc-
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-----------VSRADPHNLP-----FFDEAFDVAFTA- 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-----------~~~~d~~~~~-----~~~~~fD~i~~~- 155 (209)
...++..++|..+|.|..+..+.+. .++|+|+|.++.++. +++++..++. +..+.+|.|+..
T Consensus 15 ~~~~g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DL 93 (182)
T d1wg8a2 15 AVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILADL 93 (182)
T ss_dssp TCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEEC
T ss_pred CCCCCCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEEEEEc
Confidence 4689999999999999999999886 369999999998653 5566655532 345789999874
Q ss_pred cc--------hhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 156 HL--------AEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 156 ~~--------~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
.+ ...+ .....|......|+|||.+++....+ .+.+.+...|+..++
T Consensus 94 GvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs--~Ed~ivk~~~~e~~~ 149 (182)
T d1wg8a2 94 GVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS--LEDRVVKRFLRESGL 149 (182)
T ss_dssp SCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH--HHHHHHHHHHHHHCS
T ss_pred cCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc--chhHHHHHHHhhccc
Confidence 11 1112 23567888899999999988887653 344567777776554
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.27 E-value=7.5e-06 Score=63.03 Aligned_cols=99 Identities=15% Similarity=0.063 Sum_probs=62.8
Q ss_pred HHHhcccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCC----CCCCc----------EE-EcCCCCCCCCCCcee
Q 028410 87 HLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELM----DSLPL----------VS-RADPHNLPFFDEAFD 150 (209)
Q Consensus 87 ~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s----~~~~~----------~~-~~d~~~~~~~~~~fD 150 (209)
.+.....+++..+|+|+|||+|.++..++.. ....+.|+++- +.++. +. ..|+.. .+....|
T Consensus 57 ~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~--l~~~~~D 134 (257)
T d2p41a1 57 WFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFF--IPPERCD 134 (257)
T ss_dssp HHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTT--SCCCCCS
T ss_pred HHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHh--cCCCcCC
Confidence 3444457799999999999999999999885 33466666652 22221 11 112222 3568899
Q ss_pred eEEcccchh-------hhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 151 VAFTAHLAE-------ALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 151 ~i~~~~~~~-------~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
+|+|.-... +.-..+++.-+.+.|+|||.+++=+-.+
T Consensus 135 ~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~p 178 (257)
T d2p41a1 135 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 178 (257)
T ss_dssp EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred EEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCC
Confidence 999962111 1112456777789999999865544443
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.19 E-value=9.8e-06 Score=62.17 Aligned_cols=88 Identities=13% Similarity=0.116 Sum_probs=58.6
Q ss_pred CCCeEEEEcCCCChhHHHHHh----c-CCceEEEecCCCCCC----------cEEEcCCCCCC----CCCCceeeEEccc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS----I-GVADVTGVELMDSLP----------LVSRADPHNLP----FFDEAFDVAFTAH 156 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~----~-~~~~v~~vD~s~~~~----------~~~~~d~~~~~----~~~~~fD~i~~~~ 156 (209)
++.+|||+|++.|..+..++. . ..++++++|+++... .++++|..+.. +.+..+|+|+...
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~ 159 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 159 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcC
Confidence 467999999999988877764 1 357999999986533 37888876643 3455688887743
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
-..+-....-+ ++.+.|+|||.+++.-
T Consensus 160 ~H~~~~v~~~~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 160 AHANTFNIMKW-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp SCSSHHHHHHH-HHHHTCCTTCEEEECS
T ss_pred CcchHHHHHHH-HHhcccCcCCEEEEEc
Confidence 21111111112 4568999999976643
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=1e-05 Score=64.15 Aligned_cols=108 Identities=12% Similarity=0.040 Sum_probs=71.4
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC---------------cEEEcCCCCCCCC---CCceeeE
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP---------------LVSRADPHNLPFF---DEAFDVA 152 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~---~~~fD~i 152 (209)
...++.+|||++||+|.-+.++++. +.+.|+++|+++..+ .+...|...++.. .+.||.|
T Consensus 91 ~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~V 170 (293)
T d2b9ea1 91 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYI 170 (293)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEE
T ss_pred CCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEE
Confidence 3478999999999999999999873 457999999997622 3556666554322 2679999
Q ss_pred Ecc------cchh-----------------hh--CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHH-Hhcc
Q 028410 153 FTA------HLAE-----------------AL--FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVE-LFRT 201 (209)
Q Consensus 153 ~~~------~~~~-----------------~~--~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~-l~~~ 201 (209)
+.. .+.. .+ ....++.... .+||||.++.++.+....+.....+ ++++
T Consensus 171 L~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe~vV~~~L~~ 244 (293)
T d2b9ea1 171 LLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVVRDALQQ 244 (293)
T ss_dssp EECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTHHHHHHHHTT
T ss_pred eecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhHHHHHHHHHh
Confidence 974 1100 00 0123444444 4799999999988876655555554 4443
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.86 E-value=1.3e-05 Score=65.06 Aligned_cols=87 Identities=16% Similarity=0.178 Sum_probs=59.5
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCC----CCCCCceeeEE
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNL----PFFDEAFDVAF 153 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~----~~~~~~fD~i~ 153 (209)
...++.+|||+-||+|.++..|++.. .+|+|+|.++.++ .++.++..+. .....++|+|+
T Consensus 209 ~~~~~~~vlDLycG~G~fsl~La~~~-~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vi 287 (358)
T d1uwva2 209 DVQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 287 (358)
T ss_dssp TCCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred ccCCCceEEEecccccccchhccccc-cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEE
Confidence 45678999999999999999999874 5999999998844 3778887662 23357799998
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
..---. . ..+.+..+.+. +|.-.++++
T Consensus 288 lDPPR~-G-~~~~~~~l~~~-~~~~ivYVS 314 (358)
T d1uwva2 288 LDPARA-G-AAGVMQQIIKL-EPIRIVYVS 314 (358)
T ss_dssp ECCCTT-C-CHHHHHHHHHH-CCSEEEEEE
T ss_pred eCCCCc-c-HHHHHHHHHHc-CCCEEEEEe
Confidence 841100 0 12355555543 565544443
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.76 E-value=4.2e-05 Score=63.56 Aligned_cols=107 Identities=14% Similarity=0.069 Sum_probs=71.9
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc----C----------CceEEEecCCCCCC-----------------cEEEcCCCC
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI----G----------VADVTGVELMDSLP-----------------LVSRADPHN 141 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~----~----------~~~v~~vD~s~~~~-----------------~~~~~d~~~ 141 (209)
...++.+|+|-+||+|.+...+.+. . ...+.|+|+++.+. ....+|...
T Consensus 159 ~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~ 238 (425)
T d2okca1 159 NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLE 238 (425)
T ss_dssp CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTT
T ss_pred cCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhh
Confidence 3467899999999999999887652 1 12589999987632 244555544
Q ss_pred CCCCCCceeeEEcccchh-----------------hhC-HHHHHHHHHHhcccCcEEEEEEecC---CcccHHHHHHHhc
Q 028410 142 LPFFDEAFDVAFTAHLAE-----------------ALF-PSRFVGEMERTVKIGGVCMVLMEEC---AGREIKQIVELFR 200 (209)
Q Consensus 142 ~~~~~~~fD~i~~~~~~~-----------------~~~-~~~~l~~~~r~LkpgG~lil~~~~~---~~~~~~~~~~l~~ 200 (209)
.+ +..+||+|+++--.. ..+ ...++..+.+.||+||++.+++... .......+++.+-
T Consensus 239 ~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~Ll 317 (425)
T d2okca1 239 KE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLL 317 (425)
T ss_dssp SC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHH
T ss_pred hh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhhhHHHHHHHHH
Confidence 32 467899999971110 001 1458899999999999999998863 3333455666443
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=0.00017 Score=56.51 Aligned_cols=70 Identities=23% Similarity=0.203 Sum_probs=52.0
Q ss_pred HHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceee
Q 028410 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDV 151 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~ 151 (209)
..+.....++..|||||+|+|..+..+++.+ .+++++|+++.+ ++++.+|+....++. ++.
T Consensus 13 Iv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~--~~~ 89 (278)
T d1zq9a1 13 IIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF--FDT 89 (278)
T ss_dssp HHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC--CSE
T ss_pred HHHHhCCCCCCEEEEECCCchHHHHHHHhcC-CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh--hhh
Confidence 3334466789999999999999999999986 499999998762 347888988776543 455
Q ss_pred EEcccchhhh
Q 028410 152 AFTAHLAEAL 161 (209)
Q Consensus 152 i~~~~~~~~~ 161 (209)
|++ ++.+++
T Consensus 90 vV~-NLPY~I 98 (278)
T d1zq9a1 90 CVA-NLPYQI 98 (278)
T ss_dssp EEE-ECCGGG
T ss_pred hhc-chHHHH
Confidence 655 444444
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.40 E-value=9.4e-05 Score=63.04 Aligned_cols=111 Identities=13% Similarity=0.034 Sum_probs=69.5
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc----C---------------CceEEEecCCCCCCc--------------------
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI----G---------------VADVTGVELMDSLPL-------------------- 133 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~----~---------------~~~v~~vD~s~~~~~-------------------- 133 (209)
...++.+|+|-+||+|.+.....++ . ...++|+|+++.+..
T Consensus 161 ~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~ 240 (524)
T d2ar0a1 161 KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA 240 (524)
T ss_dssp CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBS
T ss_pred cCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccch
Confidence 4467889999999999998776541 1 125899999876332
Q ss_pred EEEcCCCCCC-CCCCceeeEEcccchh--------------hhC-HHHHHHHHHHhcccCcEEEEEEecC---CcccHHH
Q 028410 134 VSRADPHNLP-FFDEAFDVAFTAHLAE--------------ALF-PSRFVGEMERTVKIGGVCMVLMEEC---AGREIKQ 194 (209)
Q Consensus 134 ~~~~d~~~~~-~~~~~fD~i~~~~~~~--------------~~~-~~~~l~~~~r~LkpgG~lil~~~~~---~~~~~~~ 194 (209)
...++....+ ....+||+|+++--+. ..+ ...++..+.+.|||||++.++++.. .......
T Consensus 241 ~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~ 320 (524)
T d2ar0a1 241 IRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTD 320 (524)
T ss_dssp EEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHH
T ss_pred hhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehHHhhhhhhhHH
Confidence 1122222111 2346799999972110 011 2458899999999999999998753 2333344
Q ss_pred HHHHh-cccc
Q 028410 195 IVELF-RTSS 203 (209)
Q Consensus 195 ~~~l~-~~~~ 203 (209)
+++.+ +++.
T Consensus 321 iR~~Ll~~~~ 330 (524)
T d2ar0a1 321 IRRDLMDKCH 330 (524)
T ss_dssp HHHHHHHHEE
T ss_pred HHHHHHHcCC
Confidence 55544 4433
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.33 E-value=0.00011 Score=56.80 Aligned_cols=54 Identities=11% Similarity=0.046 Sum_probs=42.7
Q ss_pred HhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-------------EEEcCCCCCC
Q 028410 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-------------VSRADPHNLP 143 (209)
Q Consensus 89 ~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-------------~~~~d~~~~~ 143 (209)
++.....++..|||||||+|.++..|++.+ .+++++|+++.+++ ++.+|+.+.+
T Consensus 14 v~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~ 80 (252)
T d1qyra_ 14 VSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFN 80 (252)
T ss_dssp HHHHCCCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCC
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhc
Confidence 333356889999999999999999999986 49999999987433 5666666554
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.19 E-value=8.1e-05 Score=60.84 Aligned_cols=88 Identities=17% Similarity=0.101 Sum_probs=63.8
Q ss_pred CCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCcEEEc------------------------------CCCCCC-
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPLVSRA------------------------------DPHNLP- 143 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~~~~~------------------------------d~~~~~- 143 (209)
++.+|||..||+|..+...+. .|..+|+..|+|+..++.++. |+..+-
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 578999999999999997665 677799999999986542211 111111
Q ss_pred CCCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 144 FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 144 ~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
-....||+|...- ...+..++....+.++.||.+.+....
T Consensus 125 ~~~~~fDvIDiDP---fGs~~pfldsAi~a~~~~Gll~vTaTD 164 (375)
T d2dula1 125 ERHRYFHFIDLDP---FGSPMEFLDTALRSAKRRGILGVTATD 164 (375)
T ss_dssp HSTTCEEEEEECC---SSCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred hhcCcCCcccCCC---CCCcHHHHHHHHHHhccCCEEEEEecC
Confidence 1245699987743 225788999999999999997776544
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.10 E-value=0.00067 Score=50.07 Aligned_cols=93 Identities=18% Similarity=0.122 Sum_probs=63.3
Q ss_pred cccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCc-------EEEcCCCCCCC--------CCCceeeEE
Q 028410 91 KSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPL-------VSRADPHNLPF--------FDEAFDVAF 153 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~-------~~~~d~~~~~~--------~~~~fD~i~ 153 (209)
...++++.+||-+|||. |..+..+++ .+...|+++|.++..++ ...-+..+.++ ....+|+++
T Consensus 20 ~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vi 99 (195)
T d1kola2 20 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAV 99 (195)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred HhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEE
Confidence 45779999999999997 666677776 57779999999987443 11222222211 234688888
Q ss_pred ccc----------chhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 154 TAH----------LAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 154 ~~~----------~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
-.- ........+.++...+.++|||+++++
T Consensus 100 d~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 100 DAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp ECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred ECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 531 111113467899999999999997766
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.75 E-value=0.00064 Score=49.35 Aligned_cols=93 Identities=16% Similarity=0.115 Sum_probs=60.5
Q ss_pred HHHHhcccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC-----------CC
Q 028410 86 KHLQGKSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP-----------FF 145 (209)
Q Consensus 86 ~~l~~~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~-----------~~ 145 (209)
..+.....++++.+||-+|||. |..+..+++ .|..+|+++|.+++..+. ...|..+.. ..
T Consensus 18 ~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~ 97 (182)
T d1vj0a2 18 HAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITH 97 (182)
T ss_dssp HHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhC
Confidence 3344445678999999999873 566666676 576689999999874431 122222211 11
Q ss_pred CCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 146 DEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 146 ~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
...+|+|+..-- ....++...+.++|||+++++
T Consensus 98 ~~g~Dvvid~vG-----~~~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 98 GRGADFILEATG-----DSRALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp TSCEEEEEECSS-----CTTHHHHHHHHEEEEEEEEEC
T ss_pred CCCceEEeecCC-----chhHHHHHHHHhcCCCEEEEE
Confidence 345899876321 133567889999999998666
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.64 E-value=0.0011 Score=47.97 Aligned_cols=89 Identities=19% Similarity=0.090 Sum_probs=60.0
Q ss_pred hcccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC--------CCCCceeeE
Q 028410 90 GKSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAFDVA 152 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~i 152 (209)
....++++.+||=+|||. |..+..+++ .|..+|+++|.+++..+. ...|..+-+ .....+|+|
T Consensus 21 ~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~v 100 (174)
T d1jqba2 21 ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRV 100 (174)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEE
T ss_pred HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceE
Confidence 345679999999999986 777777887 576689999999874331 112222211 122459988
Q ss_pred EcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
+-..- ....+++..+.++|||.++++
T Consensus 101 id~~g-----~~~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 101 IMAGG-----GSETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp EECSS-----CTTHHHHHHHHEEEEEEEEEC
T ss_pred EEccC-----CHHHHHHHHHHHhcCCEEEEE
Confidence 76321 124567888999999998775
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.61 E-value=0.004 Score=44.84 Aligned_cols=94 Identities=11% Similarity=0.130 Sum_probs=63.4
Q ss_pred HHHhcccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCc---------EEEcCCCCCC-------CCCCc
Q 028410 87 HLQGKSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPL---------VSRADPHNLP-------FFDEA 148 (209)
Q Consensus 87 ~l~~~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~~d~~~~~-------~~~~~ 148 (209)
.......++++.+||=+|||. |..+..+++ .|...|+.+|.++...+ ++...-.+.. ...+.
T Consensus 19 a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G 98 (174)
T d1e3ia2 19 AAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGG 98 (174)
T ss_dssp HHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred HHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCC
Confidence 344456779999999999997 778888887 57779999999988443 2211111111 12356
Q ss_pred eeeEEcccchhhhCHHHHHHHHHHhcccC-cEEEEEEe
Q 028410 149 FDVAFTAHLAEALFPSRFVGEMERTVKIG-GVCMVLME 185 (209)
Q Consensus 149 fD~i~~~~~~~~~~~~~~l~~~~r~Lkpg-G~lil~~~ 185 (209)
+|+++-.. -....+.+..+.++|| |.++++-.
T Consensus 99 ~d~vie~~-----G~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 99 VDYSLDCA-----GTAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp BSEEEESS-----CCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred CcEEEEec-----ccchHHHHHHHHhhcCCeEEEecCC
Confidence 78876521 1345688899999996 99877643
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.34 E-value=0.0023 Score=45.54 Aligned_cols=88 Identities=15% Similarity=0.067 Sum_probs=57.3
Q ss_pred ccCCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCc---------EEEcCCCCCC----------CCCCcee
Q 028410 92 SLLFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPL---------VSRADPHNLP----------FFDEAFD 150 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~~d~~~~~----------~~~~~fD 150 (209)
..++++.+||-+||| -|..+..+++ .|. +|+++|.++...+ .+..+..... ...+.+|
T Consensus 22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D 100 (170)
T d1e3ja2 22 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPN 100 (170)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred hCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCc
Confidence 356899999999988 4556666666 575 9999999987443 2222221111 0124578
Q ss_pred eEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEe
Q 028410 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 151 ~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+++-.. .....+....+.++|||++++.-.
T Consensus 101 ~vid~~-----g~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 101 VTIDCS-----GNEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp EEEECS-----CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred eeeecC-----CChHHHHHHHHHHhcCCceEEEec
Confidence 887532 124567888999999999776643
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.15 E-value=0.00031 Score=50.50 Aligned_cols=88 Identities=14% Similarity=0.094 Sum_probs=56.0
Q ss_pred ccCCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCc---------EEEc-CCCC-CCCCCCceeeEEcccch
Q 028410 92 SLLFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPL---------VSRA-DPHN-LPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~~-d~~~-~~~~~~~fD~i~~~~~~ 158 (209)
...+++.+||-+|+| .|..+..+++ .|. +|+++|.+++.++ ++.. +..+ ..-..+.||+++...-.
T Consensus 23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~ 101 (168)
T d1piwa2 23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS 101 (168)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred hCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecC
Confidence 357899999999988 5566666666 576 8999999988554 2221 1111 11124579988763111
Q ss_pred hhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 159 EALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 159 ~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
.. ...+....+.++|||+++++
T Consensus 102 ~~---~~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 102 LT---DIDFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp ST---TCCTTTGGGGEEEEEEEEEC
T ss_pred Cc---cchHHHHHHHhhccceEEEe
Confidence 10 01134578899999998776
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.06 E-value=0.0068 Score=43.36 Aligned_cols=93 Identities=15% Similarity=0.135 Sum_probs=59.8
Q ss_pred HHHHhcccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCc---------EEEcCCCCC-----CCCCCce
Q 028410 86 KHLQGKSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPL---------VSRADPHNL-----PFFDEAF 149 (209)
Q Consensus 86 ~~l~~~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~~d~~~~-----~~~~~~f 149 (209)
..+......+++.+||=+|||. |..+..+++ .|...|+++|.++...+ ++..+-.+. .+.++.|
T Consensus 18 ~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~ 97 (174)
T d1f8fa2 18 GACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGV 97 (174)
T ss_dssp HHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCE
T ss_pred HHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCC
Confidence 3344455679999999999873 234444554 57778889999886332 332222221 1234679
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
|+|+-.. -....++...+.++|+|+++++
T Consensus 98 D~vid~~-----G~~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 98 NFALEST-----GSPEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp EEEEECS-----CCHHHHHHHHHTEEEEEEEEEC
T ss_pred cEEEEcC-----CcHHHHHHHHhcccCceEEEEE
Confidence 9987531 1245678889999999998765
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.99 E-value=0.0059 Score=43.57 Aligned_cols=90 Identities=13% Similarity=0.159 Sum_probs=59.4
Q ss_pred HHHhcccCCCCCeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC--------CCCCc
Q 028410 87 HLQGKSLLFNHSKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEA 148 (209)
Q Consensus 87 ~l~~~~~~~~~~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~ 148 (209)
.+.....++++.+||-.|+ |.|..+..+++ .|. ++++++-+++..+. ...|..+.. ...+.
T Consensus 19 al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g 97 (174)
T d1yb5a2 19 ALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKG 97 (174)
T ss_dssp HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTC
T ss_pred HHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccccCcccccccccccHHHHhhhhhccCC
Confidence 3445556799999999996 35566667777 576 88888877653321 122333322 13466
Q ss_pred eeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 149 FDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 149 fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
+|+|+... ....+.+..+.++|||+++.+
T Consensus 98 ~d~v~d~~------g~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 98 IDIIIEML------ANVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp EEEEEESC------HHHHHHHHHHHEEEEEEEEEC
T ss_pred ceEEeecc------cHHHHHHHHhccCCCCEEEEE
Confidence 99998742 234578888999999997765
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.98 E-value=0.0028 Score=45.24 Aligned_cols=91 Identities=14% Similarity=0.060 Sum_probs=58.2
Q ss_pred ccCCCCCeEEEEcCCCC-hhHHHHHh-cCCceEEEecCCCCCCc---------EEEcCCCCCC--------CCCCceeeE
Q 028410 92 SLLFNHSKVLCVSAGAG-HEVMAFNS-IGVADVTGVELMDSLPL---------VSRADPHNLP--------FFDEAFDVA 152 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G-~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~~d~~~~~--------~~~~~fD~i 152 (209)
..++++.+|+=+|||+. ..+..+++ .|..+|+++|.++..++ +...+-.+.. .....+|++
T Consensus 22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvv 101 (171)
T d1pl8a2 22 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVT 101 (171)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEE
T ss_pred hCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEE
Confidence 46789999999999743 44444455 57778999999987443 2221111110 012467887
Q ss_pred EcccchhhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
+... -....++...+.++|||++++.-...
T Consensus 102 id~~-----G~~~~~~~a~~~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 102 IECT-----GAEASIQAGIYATRSGGTLVLVGLGS 131 (171)
T ss_dssp EECS-----CCHHHHHHHHHHSCTTCEEEECSCCC
T ss_pred Eecc-----CCchhHHHHHHHhcCCCEEEEEecCC
Confidence 7632 12456788999999999987765433
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=95.60 E-value=0.037 Score=44.27 Aligned_cols=92 Identities=9% Similarity=-0.070 Sum_probs=58.6
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-----------------CCceEEEecCCCCCC-------------------cEEEcC
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-----------------GVADVTGVELMDSLP-------------------LVSRAD 138 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-----------------~~~~v~~vD~s~~~~-------------------~~~~~d 138 (209)
.+..+|.|+||.+|..+..+... +.-+|.--|.-.+-- ..+-+.
T Consensus 50 ~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGS 129 (359)
T d1m6ex_ 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCc
Confidence 44578999999999887543220 111455555433310 123445
Q ss_pred CCCCCCCCCceeeEEcccchhhh----------------------------------CHHHHHHHHHHhcccCcEEEEEE
Q 028410 139 PHNLPFFDEAFDVAFTAHLAEAL----------------------------------FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 139 ~~~~~~~~~~fD~i~~~~~~~~~----------------------------------~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+.+--||+++.|++++++..|++ |...+|+.=.+-|+|||++++..
T Consensus 130 FY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 55545889999999997544443 11346666778899999999987
Q ss_pred ec
Q 028410 185 EE 186 (209)
Q Consensus 185 ~~ 186 (209)
-.
T Consensus 210 ~g 211 (359)
T d1m6ex_ 210 LG 211 (359)
T ss_dssp EE
T ss_pred ec
Confidence 55
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=94.89 E-value=0.0044 Score=47.32 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=47.5
Q ss_pred CCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC------------------------CCcEEEcCCCC-CCCCCCceee
Q 028410 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS------------------------LPLVSRADPHN-LPFFDEAFDV 151 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~------------------------~~~~~~~d~~~-~~~~~~~fD~ 151 (209)
..+|||.-||.|..+..++..|. +|+++|.++. .++++.+|..+ +.-.+..||+
T Consensus 89 ~~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~Dv 167 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (250)
T ss_dssp CCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred CCEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCE
Confidence 35899999999999999999985 9999999875 12367777554 3323567999
Q ss_pred EEcccchh
Q 028410 152 AFTAHLAE 159 (209)
Q Consensus 152 i~~~~~~~ 159 (209)
|+..-++.
T Consensus 168 IYlDPMFp 175 (250)
T d2oyra1 168 VYLDPMFP 175 (250)
T ss_dssp EEECCCCC
T ss_pred EEECCCCc
Confidence 99865443
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.81 E-value=0.012 Score=41.63 Aligned_cols=87 Identities=15% Similarity=0.188 Sum_probs=56.4
Q ss_pred ccCCCCCeEEEEcCC--CChhHHHHHh-cCCceEEEecCCCCCCc---------EEEcCCCCCC------CCCCceeeEE
Q 028410 92 SLLFNHSKVLCVSAG--AGHEVMAFNS-IGVADVTGVELMDSLPL---------VSRADPHNLP------FFDEAFDVAF 153 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG--~G~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~~d~~~~~------~~~~~fD~i~ 153 (209)
..++++.+||=+||+ .|..+..+++ .|..+|+++|.+++..+ ++..+-.+.. .....||+++
T Consensus 23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vi 102 (170)
T d1jvba2 23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVI 102 (170)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred hCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhh
Confidence 357899999999974 3444555555 57679999999886333 2222222210 1235699888
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
...- ....++...+.++|||+++++
T Consensus 103 d~~g-----~~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 103 DLNN-----SEKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp ESCC-----CHHHHTTGGGGEEEEEEEEEC
T ss_pred cccc-----cchHHHhhhhhcccCCEEEEe
Confidence 7421 244566778999999998766
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.59 E-value=0.014 Score=41.08 Aligned_cols=85 Identities=18% Similarity=0.199 Sum_probs=52.3
Q ss_pred ccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCc---------EEEcCCCCCC-----CCCCceeeEEcc
Q 028410 92 SLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPL---------VSRADPHNLP-----FFDEAFDVAFTA 155 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~~d~~~~~-----~~~~~fD~i~~~ 155 (209)
..++++.+|+=+|+|. |..+..+++ .|. +|+++|.++..++ ++..+-.+.. ...+.+|.|++.
T Consensus 23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~ 101 (166)
T d1llua2 23 TNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTA 101 (166)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECC
T ss_pred hCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccccccc
Confidence 3568999999999863 444555555 574 9999999887443 2222211110 112334444442
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
.. ...+....+.|+|||+++++
T Consensus 102 ~~------~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 102 VS------NSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp SC------HHHHHHHHTTEEEEEEEEEC
T ss_pred cc------chHHHHHHHHhcCCcEEEEE
Confidence 21 34577888999999998765
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.47 E-value=0.077 Score=37.59 Aligned_cols=95 Identities=13% Similarity=0.048 Sum_probs=56.7
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCC-hhHHHHHh-cCCceEEEecCCCCCCc---------EEEcCCCCCC-------CCC
Q 028410 85 FKHLQGKSLLFNHSKVLCVSAGAG-HEVMAFNS-IGVADVTGVELMDSLPL---------VSRADPHNLP-------FFD 146 (209)
Q Consensus 85 ~~~l~~~~~~~~~~~iLDiGcG~G-~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~~d~~~~~-------~~~ 146 (209)
+..++....++++.+||=+|||.. ..+..+++ .|..+|+++|.+++.++ ++...-.+.. ..+
T Consensus 16 ~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~ 95 (174)
T d1p0fa2 16 YGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTN 95 (174)
T ss_dssp HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred HHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcC
Confidence 344455567899999999999843 44444455 57779999999988554 2211111111 123
Q ss_pred CceeeEEcccchhhhCHHHHHHHHHHhccc-CcEEEEEE
Q 028410 147 EAFDVAFTAHLAEALFPSRFVGEMERTVKI-GGVCMVLM 184 (209)
Q Consensus 147 ~~fD~i~~~~~~~~~~~~~~l~~~~r~Lkp-gG~lil~~ 184 (209)
+.+|+++-.. .....+.+....+++ +|.++++-
T Consensus 96 ~G~d~vid~~-----g~~~~~~~~~~~~~~~~G~~v~vG 129 (174)
T d1p0fa2 96 GGVDYAVECA-----GRIETMMNALQSTYCGSGVTVVLG 129 (174)
T ss_dssp SCBSEEEECS-----CCHHHHHHHHHTBCTTTCEEEECC
T ss_pred CCCcEEEEcC-----CCchHHHHHHHHHHHhcCceEEEE
Confidence 4577776521 123455666666655 58876654
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.31 E-value=0.021 Score=39.98 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=60.3
Q ss_pred cCCCCCeEEEEcCCCC-hhHHHHHh-cCCceEEEecCCCCCCcEE-------EcCCCCCC-------CCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAG-HEVMAFNS-IGVADVTGVELMDSLPLVS-------RADPHNLP-------FFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G-~~~~~la~-~~~~~v~~vD~s~~~~~~~-------~~d~~~~~-------~~~~~fD~i~~~~ 156 (209)
..+++.+||=.|+|+- ..+..+++ .|. +|+++|.++...++. ..+..+.. ..++.+|+|++..
T Consensus 24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 102 (168)
T d1rjwa2 24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV 102 (168)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred CCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC
Confidence 5689999999998764 33334444 465 899999888744321 11222211 1234455554421
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccc
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSS 203 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~ 203 (209)
....+....+.++|||.++++-...+...++...-+++...
T Consensus 103 ------~~~~~~~a~~~l~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 143 (168)
T d1rjwa2 103 ------SKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIK 143 (168)
T ss_dssp ------CHHHHHHHHHHEEEEEEEEECCCCSSEEEEEHHHHHHTTCE
T ss_pred ------CHHHHHHHHHHhccCCceEecccccCCCCCCHHHHHHCCcE
Confidence 23567899999999999877643333333433333444433
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.58 E-value=0.031 Score=44.01 Aligned_cols=47 Identities=21% Similarity=0.170 Sum_probs=36.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCC------------CCcEEEcCCCC
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS------------LPLVSRADPHN 141 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~------------~~~~~~~d~~~ 141 (209)
.++..|||+|.|.|.++..+.+. +..+++++|+++. .+.++.+|+..
T Consensus 42 ~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 42 PEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred cCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 35788999999999999999874 3459999999866 34466777654
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=93.46 E-value=0.03 Score=39.63 Aligned_cols=87 Identities=15% Similarity=0.077 Sum_probs=55.0
Q ss_pred cCCCCCeEEEEcCCCC-hhHHHHHh-cCCceEEEecCCCCCCc---------EEEcCCCCCC-----CCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAG-HEVMAFNS-IGVADVTGVELMDSLPL---------VSRADPHNLP-----FFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G-~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~~d~~~~~-----~~~~~fD~i~~~~ 156 (209)
.++++..||-+|+|.. ..+..+++ .|...|+++|.+++..+ ++..+-.... .....+|+++...
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~ 108 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFV 108 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESS
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEec
Confidence 3588999999998743 33344555 57679999999876332 2222211110 1234588887632
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
- ....++...+.+++||+++++-
T Consensus 109 g-----~~~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 109 G-----SQATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp C-----CHHHHHHGGGGEEEEEEEEECC
T ss_pred C-----cchHHHHHHHHHhCCCEEEEEe
Confidence 1 2345788899999999987653
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.45 E-value=0.11 Score=36.78 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=34.2
Q ss_pred HHHhcccCCCCCeEEEEcCCCC-hhHHHHHh-cCCceEEEecCCCCCCc
Q 028410 87 HLQGKSLLFNHSKVLCVSAGAG-HEVMAFNS-IGVADVTGVELMDSLPL 133 (209)
Q Consensus 87 ~l~~~~~~~~~~~iLDiGcG~G-~~~~~la~-~~~~~v~~vD~s~~~~~ 133 (209)
.+.....++++..|+=+|||.. ..+..+++ .|..+|+++|.+++.++
T Consensus 20 Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~ 68 (176)
T d1d1ta2 20 AAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFE 68 (176)
T ss_dssp HHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH
T ss_pred HHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHH
Confidence 3444556799999999999843 44444455 57779999999998554
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.26 E-value=0.093 Score=37.40 Aligned_cols=95 Identities=16% Similarity=0.125 Sum_probs=60.6
Q ss_pred HHHHhcccCCCCCeEEEEcCCC--ChhHHHHHh-cCCceEEEecCCCCCCc---------EEEcCC--CC--CCCCCCce
Q 028410 86 KHLQGKSLLFNHSKVLCVSAGA--GHEVMAFNS-IGVADVTGVELMDSLPL---------VSRADP--HN--LPFFDEAF 149 (209)
Q Consensus 86 ~~l~~~~~~~~~~~iLDiGcG~--G~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~~d~--~~--~~~~~~~f 149 (209)
..+.......++.+||=-|++. |..+.++++ .|. +|+++--+++..+ ++..+- .+ ....++.+
T Consensus 21 ~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gv 99 (176)
T d1xa0a2 21 HRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRW 99 (176)
T ss_dssp HHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCE
T ss_pred HHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCc
Confidence 3344556678889999998654 477777787 565 8888887776443 221110 00 11245679
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
|+|+-.-- ...+.+..+.|+|||+++.+-...
T Consensus 100 D~vid~vg------g~~~~~~l~~l~~~Griv~~G~~~ 131 (176)
T d1xa0a2 100 AAAVDPVG------GRTLATVLSRMRYGGAVAVSGLTG 131 (176)
T ss_dssp EEEEECST------TTTHHHHHHTEEEEEEEEECSCCS
T ss_pred CEEEEcCC------chhHHHHHHHhCCCceEEEeeccc
Confidence 98877421 123788999999999987775543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=93.11 E-value=0.022 Score=40.19 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=54.5
Q ss_pred cccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCC---CCCCCceeeEEcccch
Q 028410 91 KSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNL---PFFDEAFDVAFTAHLA 158 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~---~~~~~~fD~i~~~~~~ 158 (209)
...++++.+||=+|||. |..+..+++ .|. +++++|.+++..++ ...|..+. ....+.+|+++...-.
T Consensus 25 ~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~ 103 (168)
T d1uufa2 25 HWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAA 103 (168)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSS
T ss_pred HhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeec
Confidence 34679999999999863 455566666 575 67788887774431 11122211 1123569988763211
Q ss_pred hhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 159 EALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 159 ~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
...+....+.++|||+++++-
T Consensus 104 -----~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 104 -----PHNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp -----CCCHHHHHTTEEEEEEEEECC
T ss_pred -----chhHHHHHHHHhcCCEEEEec
Confidence 122567788999999987763
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.03 E-value=0.2 Score=34.96 Aligned_cols=94 Identities=15% Similarity=0.123 Sum_probs=58.9
Q ss_pred HHHhcccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCc---------EEEcCCCCCC-------CCCCc
Q 028410 87 HLQGKSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPL---------VSRADPHNLP-------FFDEA 148 (209)
Q Consensus 87 ~l~~~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~~d~~~~~-------~~~~~ 148 (209)
.+.....++++.+||=.|||. |..+..+++ .|...|+++|.+++..+ ++..+-.+.. ...+.
T Consensus 19 al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g 98 (176)
T d2fzwa2 19 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGG 98 (176)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred HHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCC
Confidence 344455789999999998872 244444555 57779999999987543 2211111111 12356
Q ss_pred eeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEe
Q 028410 149 FDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 149 fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+|+++-.. -....++.....+++||.++++..
T Consensus 99 ~D~vid~~-----G~~~~~~~~~~~~~~g~~~~~v~~ 130 (176)
T d2fzwa2 99 VDYSFECI-----GNVKVMRAALEACHKGWGVSVVVG 130 (176)
T ss_dssp BSEEEECS-----CCHHHHHHHHHTBCTTTCEEEECS
T ss_pred CcEeeecC-----CCHHHHHHHHHhhcCCceeEEEEe
Confidence 88887632 134567788899999988766543
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=92.99 E-value=0.028 Score=39.89 Aligned_cols=91 Identities=9% Similarity=0.017 Sum_probs=60.3
Q ss_pred HHHhcccCCCCCeEEEEcCC--CChhHHHHHh-cCCceEEEecCCCCCCc-------EEEcCCCCCCC--------CCCc
Q 028410 87 HLQGKSLLFNHSKVLCVSAG--AGHEVMAFNS-IGVADVTGVELMDSLPL-------VSRADPHNLPF--------FDEA 148 (209)
Q Consensus 87 ~l~~~~~~~~~~~iLDiGcG--~G~~~~~la~-~~~~~v~~vD~s~~~~~-------~~~~d~~~~~~--------~~~~ 148 (209)
.+.....++++.+||=.|+| .|..+..+++ .|. +|++++.+++..+ -...|..+..+ ....
T Consensus 19 al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g 97 (179)
T d1qora2 19 LLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKK 97 (179)
T ss_dssp HHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCC
T ss_pred HHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCC
Confidence 34455567899999999666 4677777887 575 9999999987443 11223333221 2467
Q ss_pred eeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 149 FDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 149 fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+|+++...-. +.+....+.++|+|++++..
T Consensus 98 ~d~v~d~~g~------~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 98 VRVVYDSVGR------DTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp EEEEEECSCG------GGHHHHHHTEEEEEEEEECC
T ss_pred eEEEEeCccH------HHHHHHHHHHhcCCeeeecc
Confidence 8988774321 23577889999999976654
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.94 E-value=0.024 Score=42.89 Aligned_cols=53 Identities=13% Similarity=0.234 Sum_probs=36.7
Q ss_pred EEEcCCCCC--CCCCCceeeEEccc---c--------hhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 134 VSRADPHNL--PFFDEAFDVAFTAH---L--------AEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 134 ~~~~d~~~~--~~~~~~fD~i~~~~---~--------~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
++++|..+. .++++++|+|+..- + ..+. .....+.++.|+|||||.+++....
T Consensus 7 ~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~ 73 (279)
T d1eg2a_ 7 YDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGL 73 (279)
T ss_dssp EEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred EEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCc
Confidence 445565442 35789999999861 1 1122 3477789999999999998887654
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=92.81 E-value=0.17 Score=39.06 Aligned_cols=108 Identities=13% Similarity=0.047 Sum_probs=69.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------EEEcCCCCCCCC-CCceeeEEcc---------c
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------VSRADPHNLPFF-DEAFDVAFTA---------H 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------~~~~d~~~~~~~-~~~fD~i~~~---------~ 156 (209)
-.+.+|+|+-||-|.....+.+.|+.-+.++|+++.+++ ...+|+.++... -..+|+++.. +
T Consensus 9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~~~~Di~~~~~~~~~~~Dll~ggpPCq~fS~ag 88 (327)
T d2c7pa1 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAGFPCQAFSISG 88 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCCBSCGGGSCGGGSCCCSEEEEECCCTTTCTTS
T ss_pred CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCCCcCchhcCchhhcceeeeeecccccchhhhhh
Confidence 367999999999999999988888877788999887543 345777665432 2468999874 1
Q ss_pred chhhh-C----HHHHHHHHHHhcccCcEEEEEEecCC------cccHHHHHHHhccccc
Q 028410 157 LAEAL-F----PSRFVGEMERTVKIGGVCMVLMEECA------GREIKQIVELFRTSSF 204 (209)
Q Consensus 157 ~~~~~-~----~~~~l~~~~r~LkpgG~lil~~~~~~------~~~~~~~~~l~~~~~~ 204 (209)
-.... + .-..+.++.+.+||.=. +..+..+ ...++.+.+.|+..|+
T Consensus 89 ~~~g~~d~r~~l~~~~~~~i~~~kP~~~--~lENV~~~~~~~~~~~~~~i~~~l~~lGY 145 (327)
T d2c7pa1 89 KQKGFEDSRGTLFFDIARIVREKKPKVV--FMENVKNFASHDNGNTLEVVKNTMNELDY 145 (327)
T ss_dssp CCCGGGSTTSCHHHHHHHHHHHHCCSEE--EEEEEGGGGTGGGGHHHHHHHHHHHHTTB
T ss_pred hhcCCcccchhHHHHHHHHHhccCCcEE--ecccchhhhhhccchhhHHhhhHHHhcCC
Confidence 11111 2 23334556667889644 4433322 2345666777776665
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=92.41 E-value=0.16 Score=34.91 Aligned_cols=88 Identities=16% Similarity=0.103 Sum_probs=55.8
Q ss_pred CeEEEEcCCC--ChhHHHHHhcCCceEEEecCCCCCCcEEEcCCCCC-----------CCCCCceeeEEcccchhhhCHH
Q 028410 98 SKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSLPLVSRADPHNL-----------PFFDEAFDVAFTAHLAEALFPS 164 (209)
Q Consensus 98 ~~iLDiGcG~--G~~~~~la~~~~~~v~~vD~s~~~~~~~~~d~~~~-----------~~~~~~fD~i~~~~~~~~~~~~ 164 (209)
++|+=+|+|. +.++..|++.|+ +|+.++.++...+.....-.+. +-....+|+|+.. ....+..
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~--vka~~~~ 77 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVT--LKAWQVS 77 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEEC--SCGGGHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEe--ecccchH
Confidence 5788898874 234444455677 9999999887554322211111 1112568888873 2222467
Q ss_pred HHHHHHHHhcccCcEEEEEEecCC
Q 028410 165 RFVGEMERTVKIGGVCMVLMEECA 188 (209)
Q Consensus 165 ~~l~~~~r~LkpgG~lil~~~~~~ 188 (209)
..++.+...++++..++.+.+..+
T Consensus 78 ~~~~~l~~~~~~~~~Iv~~qNG~~ 101 (167)
T d1ks9a2 78 DAVKSLASTLPVTTPILLIHNGMG 101 (167)
T ss_dssp HHHHHHHTTSCTTSCEEEECSSSC
T ss_pred HHHHhhccccCcccEEeeccCccc
Confidence 888999999999988777666543
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=92.33 E-value=0.18 Score=35.32 Aligned_cols=94 Identities=12% Similarity=0.005 Sum_probs=55.8
Q ss_pred HHHHhcccCCCCCeEEEEcCCCC-hhHHHHHh-cCCceEEEecCCCCCCc---------EEE-cCCCCCC------CCCC
Q 028410 86 KHLQGKSLLFNHSKVLCVSAGAG-HEVMAFNS-IGVADVTGVELMDSLPL---------VSR-ADPHNLP------FFDE 147 (209)
Q Consensus 86 ~~l~~~~~~~~~~~iLDiGcG~G-~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~-~d~~~~~------~~~~ 147 (209)
..+.....++++.+||=+|+|.+ ..+..+++ .+..+|+++|.+++..+ ++. .+..+.. ...+
T Consensus 18 ~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~ 97 (176)
T d2jhfa2 18 GSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNG 97 (176)
T ss_dssp HHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred HHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcC
Confidence 33445567899999999999743 23333333 56679999999988443 211 1111110 1235
Q ss_pred ceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 148 AFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 148 ~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
.+|+++-..- ....+......+++||..+++.
T Consensus 98 G~D~vid~~G-----~~~~~~~a~~~~~~~~g~~~~~ 129 (176)
T d2jhfa2 98 GVDFSFEVIG-----RLDTMVTALSCCQEAYGVSVIV 129 (176)
T ss_dssp CBSEEEECSC-----CHHHHHHHHHHBCTTTCEEEEC
T ss_pred CCCEEEecCC-----chhHHHHHHHHHhcCCcceEEe
Confidence 6888876321 2344667778888874444443
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=92.32 E-value=0.19 Score=35.47 Aligned_cols=91 Identities=18% Similarity=0.088 Sum_probs=59.7
Q ss_pred HHHHhcccCCCCCeEEEEcCCC--ChhHHHHHh-cCCceEEEecCCCCCCc---------EEEcCCCCCC------CCCC
Q 028410 86 KHLQGKSLLFNHSKVLCVSAGA--GHEVMAFNS-IGVADVTGVELMDSLPL---------VSRADPHNLP------FFDE 147 (209)
Q Consensus 86 ~~l~~~~~~~~~~~iLDiGcG~--G~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~~d~~~~~------~~~~ 147 (209)
..+.....++++++||=.|+|. |..+..+++ .|. +|++++-+++..+ ++..+-.+.. ....
T Consensus 19 ~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~ 97 (182)
T d1v3va2 19 FGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPD 97 (182)
T ss_dssp HHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTT
T ss_pred HHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcC
Confidence 3445556779999999888754 466777777 465 9999987766332 2222211110 1235
Q ss_pred ceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 148 AFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 148 ~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
.+|+|+..- ..+.+++..+.|+|||.++.+
T Consensus 98 Gvd~v~D~v------G~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 98 GYDCYFDNV------GGEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp CEEEEEESS------CHHHHHHHGGGEEEEEEEEEC
T ss_pred CCceeEEec------CchhhhhhhhhccCCCeEEee
Confidence 688887632 134678999999999997765
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.04 E-value=0.12 Score=36.46 Aligned_cols=89 Identities=19% Similarity=0.169 Sum_probs=54.9
Q ss_pred HHhcccCCCCCeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC--------CCCCce
Q 028410 88 LQGKSLLFNHSKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAF 149 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~f 149 (209)
+.....++++.+||=.|+ |.|..+..+++ .|. ++++++-+++..++ ...|..+.. .....|
T Consensus 17 l~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~ 95 (183)
T d1pqwa_ 17 LCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGV 95 (183)
T ss_dssp HHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCE
T ss_pred HHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCE
Confidence 344556789999999873 34566666666 475 77776655542221 111222221 134679
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
|+++...- .+.+.+..+.|+|+|+++.+
T Consensus 96 d~v~d~~g------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 96 DVVLNSLA------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp EEEEECCC------THHHHHHHHTEEEEEEEEEC
T ss_pred EEEEeccc------chHHHHHHHHhcCCCEEEEE
Confidence 99987432 23567788999999997765
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=91.17 E-value=0.11 Score=38.54 Aligned_cols=68 Identities=12% Similarity=0.225 Sum_probs=40.5
Q ss_pred EEEcCCCCC--CCCCCceeeEEccc---c-----------hhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHH
Q 028410 134 VSRADPHNL--PFFDEAFDVAFTAH---L-----------AEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIV 196 (209)
Q Consensus 134 ~~~~d~~~~--~~~~~~fD~i~~~~---~-----------~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~ 196 (209)
+..+|..+. .++++++|+|+.+- + ..++ .....+.++.|+|||||.+++.... .....+.
T Consensus 7 i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~---~~~~~~~ 83 (256)
T d1g60a_ 7 IHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP---FNCAFIC 83 (256)
T ss_dssp EEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH---HHHHHHH
T ss_pred EEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCc---hhhhhhh
Confidence 556666542 35678888888851 1 1111 2356889999999999987665443 2233344
Q ss_pred HHhccccc
Q 028410 197 ELFRTSSF 204 (209)
Q Consensus 197 ~l~~~~~~ 204 (209)
..+...++
T Consensus 84 ~~~~~~g~ 91 (256)
T d1g60a_ 84 QYLVSKGM 91 (256)
T ss_dssp HHHHHTTC
T ss_pred hhhhcccc
Confidence 44444443
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=90.96 E-value=0.086 Score=40.30 Aligned_cols=40 Identities=8% Similarity=-0.028 Sum_probs=35.4
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcE
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLV 134 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~ 134 (209)
..++..|||.-||+|..+.+..+.|. +.+|+|++++.++.
T Consensus 248 s~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~ 287 (320)
T d1booa_ 248 TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAA 287 (320)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred ccCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHH
Confidence 48899999999999999999888875 99999999886654
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=90.93 E-value=0.43 Score=33.11 Aligned_cols=95 Identities=12% Similarity=0.023 Sum_probs=55.3
Q ss_pred HHHHhcccCCCCCeEEEEcCCCCh-hHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC---------CCCC
Q 028410 86 KHLQGKSLLFNHSKVLCVSAGAGH-EVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP---------FFDE 147 (209)
Q Consensus 86 ~~l~~~~~~~~~~~iLDiGcG~G~-~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~---------~~~~ 147 (209)
..+.....++++.+|+=+|+|.+- .+..++. .+...|+++|.+++.++. ...|..+-. ....
T Consensus 18 ~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~ 97 (175)
T d1cdoa2 18 GAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNG 97 (175)
T ss_dssp HHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTS
T ss_pred HHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccC
Confidence 344455678999999999998743 3333343 566799999999885441 111211111 1124
Q ss_pred ceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEe
Q 028410 148 AFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 148 ~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
.+|+++-.-- ....+....+.+++||..++...
T Consensus 98 G~d~vid~~G-----~~~~~~~a~~~~~~g~~~~~~~g 130 (175)
T d1cdoa2 98 GVDFSLECVG-----NVGVMRNALESCLKGWGVSVLVG 130 (175)
T ss_dssp CBSEEEECSC-----CHHHHHHHHHTBCTTTCEEEECS
T ss_pred CcceeeeecC-----CHHHHHHHHHHhhCCCcceeEEE
Confidence 5777765321 23445667777777655444443
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=90.57 E-value=0.033 Score=39.49 Aligned_cols=84 Identities=18% Similarity=0.165 Sum_probs=54.1
Q ss_pred ccCCCCCeEEEEcC-C-CChhHHHHHh-cCCceEEEecCCCCCCcEE-------EcCCCCCC---CCCCceeeEEcccch
Q 028410 92 SLLFNHSKVLCVSA-G-AGHEVMAFNS-IGVADVTGVELMDSLPLVS-------RADPHNLP---FFDEAFDVAFTAHLA 158 (209)
Q Consensus 92 ~~~~~~~~iLDiGc-G-~G~~~~~la~-~~~~~v~~vD~s~~~~~~~-------~~d~~~~~---~~~~~fD~i~~~~~~ 158 (209)
..++++.+||=.|+ | .|..+..+++ .|. +|++++.+++..+.. ..|..+.. -....+|+|+.. .
T Consensus 23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~--~ 99 (171)
T d1iz0a2 23 AQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEV--R 99 (171)
T ss_dssp TTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEEC--S
T ss_pred hCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccccccceeeehhhhhhhhhccccccccccc--c
Confidence 46799999999885 3 3567777777 575 899999887644311 11222211 113568988762 1
Q ss_pred hhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 159 EALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 159 ~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
. +.+....+.|+|||+++.+
T Consensus 100 G-----~~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 100 G-----KEVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp C-----TTHHHHHTTEEEEEEEEEC
T ss_pred c-----hhHHHHHHHHhcCCcEEEE
Confidence 1 1256778999999998765
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=90.13 E-value=0.26 Score=37.55 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=45.5
Q ss_pred CeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------EEEcCCCCCCCC-CCceeeEEcc
Q 028410 98 SKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------VSRADPHNLPFF-DEAFDVAFTA 155 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------~~~~d~~~~~~~-~~~fD~i~~~ 155 (209)
++|+|+-||-|.+...+.+.|+..+.++|+++...+ ...+|+.++... -..+|+++..
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~dll~~g 68 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGG 68 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCCSEEEESCTTTSCGGGSCCCSEEEEC
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCCCCccCChhhCCHhHcccccEEeec
Confidence 479999999999988887778877779999987443 678999887532 2468999874
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.79 E-value=0.15 Score=38.25 Aligned_cols=39 Identities=18% Similarity=0.051 Sum_probs=34.3
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL 133 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~ 133 (209)
..++..|||--||+|..+.+..+.|. +.+|+|+++...+
T Consensus 205 s~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~ 243 (279)
T d1eg2a_ 205 SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKE 243 (279)
T ss_dssp SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHH
T ss_pred cCCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHH
Confidence 58999999999999999998888874 9999999998544
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=89.70 E-value=0.14 Score=37.76 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=32.6
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL 131 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~ 131 (209)
..++..|||.-||+|..+.+..+.| .+.+|+|++++.
T Consensus 210 s~~gd~VlDpF~GSGTT~~aa~~~~-R~~ig~El~~~y 246 (256)
T d1g60a_ 210 SNPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEY 246 (256)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHH
T ss_pred CCCCCEEEECCCCchHHHHHHHHcC-CeEEEEeCCHHH
Confidence 4889999999999999999888887 499999998753
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=89.01 E-value=0.12 Score=37.16 Aligned_cols=88 Identities=23% Similarity=0.256 Sum_probs=53.6
Q ss_pred CCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCc--------EEEcCCCC---C----------C--CC----
Q 028410 95 FNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPL--------VSRADPHN---L----------P--FF---- 145 (209)
Q Consensus 95 ~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~--------~~~~d~~~---~----------~--~~---- 145 (209)
-++.+|+=+|+|. |..+...|. .|. +|+.+|.++...+ ++..+... . . +.
T Consensus 27 V~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~ 105 (183)
T d1l7da1 27 VPPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA 105 (183)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred cCCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence 3568999999994 455555555 575 9999999988543 22111110 0 0 00
Q ss_pred ------CCceeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEE
Q 028410 146 ------DEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 146 ------~~~fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~ 183 (209)
-...|+|+..-...-- -|.-+-+++.+.+|||.+++=+
T Consensus 106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDv 150 (183)
T d1l7da1 106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDL 150 (183)
T ss_dssp HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEET
T ss_pred HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEE
Confidence 1358999885332222 3444558899999999985543
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.85 E-value=0.57 Score=33.08 Aligned_cols=88 Identities=10% Similarity=0.067 Sum_probs=55.5
Q ss_pred hcccCCCC--CeEEEEc--CCCChhHHHHHh-cCCceEEEecCCCCCCc--------EEEcCCCCCC-------CCCCce
Q 028410 90 GKSLLFNH--SKVLCVS--AGAGHEVMAFNS-IGVADVTGVELMDSLPL--------VSRADPHNLP-------FFDEAF 149 (209)
Q Consensus 90 ~~~~~~~~--~~iLDiG--cG~G~~~~~la~-~~~~~v~~vD~s~~~~~--------~~~~d~~~~~-------~~~~~f 149 (209)
....++++ ..||-.| .|.|..+.++++ .|...|++++-+++... -...|..+-. ..+..+
T Consensus 22 ~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~Gv 101 (187)
T d1vj1a2 22 EKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGV 101 (187)
T ss_dssp HHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCE
T ss_pred HHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCc
Confidence 33455665 7799877 467799999998 57667887766644211 1122222211 123568
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
|+|+-.- -.+.+....+.|+|||+++.+
T Consensus 102 Dvv~D~v------Gg~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 102 DVYFDNV------GGDISNTVISQMNENSHIILC 129 (187)
T ss_dssp EEEEESS------CHHHHHHHHTTEEEEEEEEEC
T ss_pred eEEEecC------CchhHHHHhhhccccccEEEe
Confidence 9987632 134578899999999998765
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=88.37 E-value=0.017 Score=41.20 Aligned_cols=87 Identities=15% Similarity=0.179 Sum_probs=55.0
Q ss_pred CCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCc-----------EEEcCCCCCCCCCCceeeEEcccchhhh-
Q 028410 96 NHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPL-----------VSRADPHNLPFFDEAFDVAFTAHLAEAL- 161 (209)
Q Consensus 96 ~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~-----------~~~~d~~~~~~~~~~fD~i~~~~~~~~~- 161 (209)
++.+|+=+|+|. |..+...+. .|. +|+.+|.+++.++ ....+-+.+.-.-...|+|+..-+..--
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~ 109 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR 109 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence 578999999993 555555555 574 9999999977443 2222221121112468999986432212
Q ss_pred CHHHHHHHHHHhcccCcEEEEE
Q 028410 162 FPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 162 ~~~~~l~~~~r~LkpgG~lil~ 183 (209)
-|.-+-+++.+.+|||.+++=+
T Consensus 110 aP~lIt~~mv~~Mk~GSVIVDv 131 (168)
T d1pjca1 110 APILVPASLVEQMRTGSVIVDV 131 (168)
T ss_dssp CCCCBCHHHHTTSCTTCEEEET
T ss_pred cCeeecHHHHhhcCCCcEEEEe
Confidence 3444458899999999985544
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.04 E-value=0.21 Score=38.43 Aligned_cols=106 Identities=9% Similarity=0.066 Sum_probs=64.4
Q ss_pred CCeEEEEcCCCChhHHHHHhcCC--ceEEEecCCCCCCc----------EEEcCCCCCCC---CCCceeeEEccc-----
Q 028410 97 HSKVLCVSAGAGHEVMAFNSIGV--ADVTGVELMDSLPL----------VSRADPHNLPF---FDEAFDVAFTAH----- 156 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~~~--~~v~~vD~s~~~~~----------~~~~d~~~~~~---~~~~fD~i~~~~----- 156 (209)
+.+|+|+-||.|.+...+.+.|. .-+.++|+++.+.+ ++.+|+.++.. +...+|+++...
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~~~~~~~di~~~~~~~~~~~~~Dll~ggpPCq~f 81 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCCCCcccCchhhCCHhHcCCCCccEEEeecccccc
Confidence 57899999999998887766564 34778999887443 55667766542 224689998741
Q ss_pred -c---hhhh-CH-HHHHHHHHHhc-----ccCcEEEEEEecCCc---ccHHHHHHHhccccc
Q 028410 157 -L---AEAL-FP-SRFVGEMERTV-----KIGGVCMVLMEECAG---REIKQIVELFRTSSF 204 (209)
Q Consensus 157 -~---~~~~-~~-~~~l~~~~r~L-----kpgG~lil~~~~~~~---~~~~~~~~l~~~~~~ 204 (209)
. -... +. ..++.++.+++ ||- +++..+..+- ..+..+.+.|+..|+
T Consensus 82 S~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk--~~i~ENV~~l~~~~~~~~i~~~l~~~GY 141 (343)
T d1g55a_ 82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKGFEVSSTRDLLIQTIENCGF 141 (343)
T ss_dssp --------------CHHHHHHHHGGGCSSCCS--EEEEEEETTGGGSHHHHHHHHHHHHTTE
T ss_pred cccccccccccccccccchhhhhHhhhcCCCc--eeeeeccCCcccchhhHHHHhhhhcccc
Confidence 1 1111 22 24556666655 464 4455555532 345667777777765
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=86.51 E-value=0.41 Score=31.66 Aligned_cols=75 Identities=13% Similarity=-0.025 Sum_probs=44.5
Q ss_pred CCChhHHHHHh----cCCceEEEecCCCCCC--------cEEEcCCCCCCC----CCCceeeEEcccchhhhCHHHHHHH
Q 028410 106 GAGHEVMAFNS----IGVADVTGVELMDSLP--------LVSRADPHNLPF----FDEAFDVAFTAHLAEALFPSRFVGE 169 (209)
Q Consensus 106 G~G~~~~~la~----~~~~~v~~vD~s~~~~--------~~~~~d~~~~~~----~~~~fD~i~~~~~~~~~~~~~~l~~ 169 (209)
|.|.++..+++ .|. +|+.+|.+++.+ .++.+|..+... .-...|.++...-.. +....+..
T Consensus 7 G~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~--~~~~~~~~ 83 (134)
T d2hmva1 7 GLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN--IQASTLTT 83 (134)
T ss_dssp CCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSC--HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCch--HHhHHHHH
Confidence 55688888876 366 999999987733 377888877542 124577766521111 12233444
Q ss_pred HHHhcccCcEEEEE
Q 028410 170 MERTVKIGGVCMVL 183 (209)
Q Consensus 170 ~~r~LkpgG~lil~ 183 (209)
+.+.+.|...++.-
T Consensus 84 ~~~~~~~~~~iiar 97 (134)
T d2hmva1 84 LLLKELDIPNIWVK 97 (134)
T ss_dssp HHHHHTTCSEEEEE
T ss_pred HHHHHcCCCcEEee
Confidence 55555666664433
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=86.27 E-value=0.49 Score=33.05 Aligned_cols=93 Identities=16% Similarity=0.132 Sum_probs=57.0
Q ss_pred HHhcccCCCCCeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCc---------EEEcC---CC-CCCCCCCceee
Q 028410 88 LQGKSLLFNHSKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPL---------VSRAD---PH-NLPFFDEAFDV 151 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~~d---~~-~~~~~~~~fD~ 151 (209)
+.......++..||=-|+ |-|..+.++++ .|. +|+++.-+++..+ ++..+ .. ......+.+|+
T Consensus 15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~ 93 (167)
T d1tt7a2 15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQG 93 (167)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEE
T ss_pred HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceE
Confidence 334444556667887664 34567777777 575 8999888876443 21111 01 11233567998
Q ss_pred EEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 152 i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
|+-.- -.+.+.+..+.|+|||+++.+-...
T Consensus 94 vid~v------gg~~~~~~~~~l~~~G~iv~~G~~~ 123 (167)
T d1tt7a2 94 AVDPV------GGKQLASLLSKIQYGGSVAVSGLTG 123 (167)
T ss_dssp EEESC------CTHHHHHHHTTEEEEEEEEECCCSS
T ss_pred EEecC------cHHHHHHHHHHhccCceEEEeeccC
Confidence 87632 1235688999999999977664443
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=85.64 E-value=0.64 Score=31.91 Aligned_cols=76 Identities=12% Similarity=0.034 Sum_probs=44.6
Q ss_pred CeEEEEcCC--CChhHHHHHhcCCceEEEecCCCCCCc---------EEEcCCCCCCCCCCceeeEEcccchhhhCHHHH
Q 028410 98 SKVLCVSAG--AGHEVMAFNSIGVADVTGVELMDSLPL---------VSRADPHNLPFFDEAFDVAFTAHLAEALFPSRF 166 (209)
Q Consensus 98 ~~iLDiGcG--~G~~~~~la~~~~~~v~~vD~s~~~~~---------~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~ 166 (209)
++|.=||+| .+.++..+.+.|+ +|+++|.+++..+ ....+.+. -...|+|+..--.. ...++
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~----~~~~DiIilavp~~--~~~~v 73 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQDLSL----LQTAKIIFLCTPIQ--LILPT 73 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEESCGGG----GTTCSEEEECSCHH--HHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhccceeeeeccc----ccccccccccCcHh--hhhhh
Confidence 467778776 2233344445677 9999999876332 11111111 24678887632111 24677
Q ss_pred HHHHHHhcccCcEE
Q 028410 167 VGEMERTVKIGGVC 180 (209)
Q Consensus 167 l~~~~r~LkpgG~l 180 (209)
++++...++++-.+
T Consensus 74 l~~l~~~l~~~~iv 87 (165)
T d2f1ka2 74 LEKLIPHLSPTAIV 87 (165)
T ss_dssp HHHHGGGSCTTCEE
T ss_pred hhhhhhhcccccce
Confidence 88888888887754
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=84.97 E-value=0.34 Score=36.72 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=35.9
Q ss_pred EEEcCCCC--CCCCCCceeeEEcc---cc-----------hhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 134 VSRADPHN--LPFFDEAFDVAFTA---HL-----------AEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 134 ~~~~d~~~--~~~~~~~fD~i~~~---~~-----------~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+++||..+ -.++++++|+|+.. ++ ..++ ...+.+.+++|+|||+|.+++....
T Consensus 15 l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~ 84 (320)
T d1booa_ 15 MYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG 84 (320)
T ss_dssp EEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccc
Confidence 55666543 12567888888875 11 1122 2467899999999999998887654
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.92 E-value=2.4 Score=30.66 Aligned_cols=90 Identities=13% Similarity=0.065 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCCC---hhHHHHHhcCCceEEEecCCCCCCc--EEEcCCCCC--------------CCCCCceeeEEccc
Q 028410 96 NHSKVLCVSAGAG---HEVMAFNSIGVADVTGVELMDSLPL--VSRADPHNL--------------PFFDEAFDVAFTAH 156 (209)
Q Consensus 96 ~~~~iLDiGcG~G---~~~~~la~~~~~~v~~vD~s~~~~~--~~~~d~~~~--------------~~~~~~fD~i~~~~ 156 (209)
++.+||=.|+++| ..+..+++.|. +|..+|.++.... ......... .+..+..|+++++.
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~lInnA 79 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVA 79 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTSSEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCccccccccceeecccCcHHHHHHHHHHHHHHhCCCCceEEEECC
Confidence 4678999997766 44455555676 9999998765332 111111110 02245689888751
Q ss_pred c-h---hhh--CH---------------HHHHHHHHHhcccCcEEEEEEec
Q 028410 157 L-A---EAL--FP---------------SRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 157 ~-~---~~~--~~---------------~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
- . ... .. ....+.+.+.++++|.++.+...
T Consensus 80 G~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~ 130 (236)
T d1dhra_ 80 GGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAK 130 (236)
T ss_dssp CCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred cccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccH
Confidence 1 0 001 11 22446667788999997776544
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=82.06 E-value=1 Score=32.71 Aligned_cols=88 Identities=14% Similarity=0.050 Sum_probs=49.4
Q ss_pred CCeEEEEcCCCChhHHHH----HhcCCceEEEecCCCCCCc----EEEcCCCCC------------CCCCCceeeEEccc
Q 028410 97 HSKVLCVSAGAGHEVMAF----NSIGVADVTGVELMDSLPL----VSRADPHNL------------PFFDEAFDVAFTAH 156 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~l----a~~~~~~v~~vD~s~~~~~----~~~~d~~~~------------~~~~~~fD~i~~~~ 156 (209)
..+||=.|+++| .+.++ ++.|+ +|+.+|.+++... ...++.... .+..+.+|+++.+.
T Consensus 2 ~gkVlITGas~G-IG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~linnA 79 (235)
T d1ooea_ 2 SGKVIVYGGKGA-LGSAILEFFKKNGY-TVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVA 79 (235)
T ss_dssp CEEEEEETTTSH-HHHHHHHHHHHTTE-EEEEEESSCCTTSSEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCchhcccccceeccccCchhHHHHHHHHHHHHhcCCCeeEEEECC
Confidence 357887787654 44444 44575 8999999876332 112222110 02346789998751
Q ss_pred -c--h-hhh--CH---------------HHHHHHHHHhcccCcEEEEEEec
Q 028410 157 -L--A-EAL--FP---------------SRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 157 -~--~-~~~--~~---------------~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
. . ... +. ..+.+.+.+.+|+||.++.+...
T Consensus 80 G~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~ 130 (235)
T d1ooea_ 80 GGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAA 130 (235)
T ss_dssp CCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred cccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccH
Confidence 0 0 000 11 22346677888999997766543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=81.20 E-value=0.49 Score=32.62 Aligned_cols=78 Identities=12% Similarity=0.054 Sum_probs=45.8
Q ss_pred eEEEEcCCCChhHHHH----HhcCC-ceEEEecCCCCCCcE---------EEcCCCCCCCCCCceeeEEcccchhhhCHH
Q 028410 99 KVLCVSAGAGHEVMAF----NSIGV-ADVTGVELMDSLPLV---------SRADPHNLPFFDEAFDVAFTAHLAEALFPS 164 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~l----a~~~~-~~v~~vD~s~~~~~~---------~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~ 164 (209)
+|+=|||| ..+..+ .+.+. .+|+++|.+++.++. ...+.. ...+...|+|+...-.. ...
T Consensus 3 ~I~IIG~G--~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~dlIila~p~~--~~~ 76 (171)
T d2g5ca2 3 NVLIVGVG--FMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIA--KVEDFSPDFVMLSSPVR--TFR 76 (171)
T ss_dssp EEEEESCS--HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGG--GGGGTCCSEEEECSCHH--HHH
T ss_pred EEEEEccC--HHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhh--hhhccccccccccCCch--hhh
Confidence 47788887 444444 44443 489999998874431 111111 12234678887642111 245
Q ss_pred HHHHHHHHhcccCcEEEE
Q 028410 165 RFVGEMERTVKIGGVCMV 182 (209)
Q Consensus 165 ~~l~~~~r~LkpgG~lil 182 (209)
..+.++.+.++++..++-
T Consensus 77 ~vl~~l~~~~~~~~ii~d 94 (171)
T d2g5ca2 77 EIAKKLSYILSEDATVTD 94 (171)
T ss_dssp HHHHHHHHHSCTTCEEEE
T ss_pred hhhhhhhccccccccccc
Confidence 677888888988766433
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=81.03 E-value=4.3 Score=26.18 Aligned_cols=78 Identities=9% Similarity=-0.018 Sum_probs=49.1
Q ss_pred CCCChhHHHHHh--cCCceEEEecCCCCC--------CcEEEcCCCCCC----CCCCceeeEEcccchhhhCHHHHHHHH
Q 028410 105 AGAGHEVMAFNS--IGVADVTGVELMDSL--------PLVSRADPHNLP----FFDEAFDVAFTAHLAEALFPSRFVGEM 170 (209)
Q Consensus 105 cG~G~~~~~la~--~~~~~v~~vD~s~~~--------~~~~~~d~~~~~----~~~~~fD~i~~~~~~~~~~~~~~l~~~ 170 (209)
||.|..+..+++ .+. .++.+|.++.. ..++.||..+.. ..-+..+.+++..-.. .....+...
T Consensus 6 ~G~g~~g~~l~~~L~~~-~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d--~~n~~~~~~ 82 (129)
T d2fy8a1 6 CGWSESTLECLRELRGS-EVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESD--SETIHCILG 82 (129)
T ss_dssp ESCCHHHHHHHHTSCGG-GEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSH--HHHHHHHHH
T ss_pred ECCCHHHHHHHHHHcCC-CCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccch--hhhHHHHHH
Confidence 466799999988 344 78889998873 348889987732 2235567776632111 122334555
Q ss_pred HHhcccCcEEEEEEe
Q 028410 171 ERTVKIGGVCMVLME 185 (209)
Q Consensus 171 ~r~LkpgG~lil~~~ 185 (209)
.|.+.|...++.-+.
T Consensus 83 ~r~~~~~~~iia~~~ 97 (129)
T d2fy8a1 83 IRKIDESVRIIAEAE 97 (129)
T ss_dssp HHHHCSSSCEEEECS
T ss_pred HHHHCCCceEEEEEc
Confidence 677889887555444
|