Citrus Sinensis ID: 028433

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MLINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA
Secondary Structure (PSIPRED)
cHHHHHHHccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEEEEEccEEEEEEccccccccccccHHHHHHHcccccccEEEEEcccccccccEEEcccccccccccHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEccEEEEEEEEcccHHHcHHHHHHHHHHHcccHHHEEEEEEEcccccccEEEEEcccccccHHHHHHHHHHccccccccccccHHHEcccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHcEEccccc
Coil and Loop (DISEMBL)
mlinrflrrgfctavarpwlfvglgnpgdkykgtrhnqVGFEMIDAFAEsqgismntvhckatfgqgfvgdapvllakpqtymnlsgestgplaayyklplnrvlvfhddmglpcgvlrlrhngghgghngLKSVMNNfrgigrppgqmdpKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA
Flexible Loop (DISEMBL)
MLINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSkgltesarhfntiqkykhirlqnmpa
Low Complexity Region (SEG)
MLINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVlrlrhngghgghnglKSVMNNFRGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA
Disordered region (IsUnstruct)
**INRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGIG*******PKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHI*******
Disordered Region (DISOPRED)
***************ARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT**************
Disordered Region (DISEMBL)
MLINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA
Disordered Region (DISPRO)
*LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQN***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
Q6NLS8	219	Peptidyl-tRNA hydrolase,	yes	no	0.961	0.917	0.708	1e-81
Q9M5P4	256	Chloroplastic group IIB i	N/A	no	0.889	0.726	0.543	9e-59
Q5ZCL8	259	Chloroplastic group IIB i	yes	no	0.870	0.702	0.554	2e-58
Q8GW64	288	Peptidyl-tRNA hydrolase,	no	no	0.880	0.638	0.523	5e-56
Q9FKN4	246	Chloroplastic group IIB i	no	no	0.870	0.739	0.564	7e-56
Q9LF14	240	Chloroplastic group IIB i	no	no	0.870	0.758	0.544	2e-55
Q5N9Q7	250	Peptidyl-tRNA hydrolase,	no	no	0.885	0.74	0.515	3e-55
Q10LI6	186	CRS2-like protein, chloro	no	no	0.555	0.623	0.743	3e-43
Q47SW2	213	Peptidyl-tRNA hydrolase O	yes	no	0.813	0.798	0.416	1e-37
A8F920	188	Peptidyl-tRNA hydrolase O	yes	no	0.827	0.920	0.442	1e-33

>sp|Q6NLS8|PTHM_ARATH Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1

 Score =  302 bits (774), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 151/213 (70%), Positives = 171/213 (80%), Gaps = 12/213 (5%)

Query: 2   LINRFLRRGFCTA-VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHC 60
           +++R  RR +CT+ V RPWLF+GLGNPGDKYKGTRHN +GFEMID FAES GI MN V+ 
Sbjct: 1   MLSRLSRRCYCTSSVHRPWLFLGLGNPGDKYKGTRHN-IGFEMIDVFAESVGIQMNLVNF 59

Query: 61  KATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRL 120
           KA  GQGFV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLNRVLV HDDM LPCGVLRL
Sbjct: 60  KAIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRL 119

Query: 121 RHNGGHGGHNGLKSVMNNFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTA 170
           +  GGHG HNGLKSVMN+FR          GIG+PPGQMDPKAFLLQKF+  ARER+D A
Sbjct: 120 QEKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKA 179

Query: 171 LQEGVEVLKLLLSKGLTESARHFNTIQKYKHIR 203
           L EGV+ LKL+L+K   ES R FN  QKYKH++
Sbjct: 180 LAEGVDALKLVLAKDFGESWRLFNVEQKYKHLK 212

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. May also be required for the splicing of group IIB introns in mitochondrions.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 9

>sp|Q9M5P4|CRS2_MAIZE Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1

 Score =  226 bits (576), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 107/197 (54%), Positives = 142/197 (72%), Gaps = 11/197 (5%)

Query: 18  PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
           PWL  GLGNPG+KY GTRHN VGFEM+D  A  +GI+MNT+  K+  G G +G+ PVL+ 
Sbjct: 61  PWLIAGLGNPGNKYYGTRHN-VGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVV 119

Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
           KPQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GVLRL+  GGHG HNGL++V+ 
Sbjct: 120 KPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIE 179

Query: 138 NFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 187
           +            GIG PPG+MDP+AFLLQKF++  R +IDTAL++GV+ ++ L+ KG +
Sbjct: 180 HLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFS 239

Query: 188 ESARHFNTIQKYKHIRL 204
            S   FN +QKYK  R+
Sbjct: 240 GSTERFNLVQKYKFHRV 256

Required for the splicing of group IIB introns in chloroplasts. Forms complexes with either CAF1 or CAF2 which, in turn, interact with RNA and confer intron specificity of the splicing particles. Has no peptidyl-tRNA hydrolase activity.

Zea mays (taxid: 4577)

>sp|Q5ZCL8|CRS2_ORYSJ Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0132800 PE=2 SV=1

 Score =  224 bits (572), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 138/193 (71%), Gaps = 11/193 (5%)

Query: 18  PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
           PWL  GLGNPG KY GTRHN VGFEM+D  A  +GI+MNT+  K+  G G +G+ PVLL 
Sbjct: 64  PWLIAGLGNPGSKYHGTRHN-VGFEMVDRIARDEGITMNTIQSKSLLGIGSIGEVPVLLV 122

Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
           KPQ+Y+N SGE+ GPLAAYY++PL  +LV +D+M LP GVLRL+  GGHG HNGL++VM 
Sbjct: 123 KPQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNGLQNVME 182

Query: 138 NFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 187
                        GIG PPG+MD +AFLLQKF++  R +IDTAL++GV+ ++ L+ KG +
Sbjct: 183 CLDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDTALEQGVDAVRTLVLKGFS 242

Query: 188 ESARHFNTIQKYK 200
            S   FN +QKYK
Sbjct: 243 GSIERFNLVQKYK 255

Required for the splicing of group IIB introns in chloroplasts.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GW64|PTHC_ARATH Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2

 Score =  217 bits (552), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 102/195 (52%), Positives = 142/195 (72%), Gaps = 11/195 (5%)

Query: 18  PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
           PWL VGLGNPG KY+GTRHN VGFEM+DA A+++GISMNTV+ KA FG+G +G+ P++LA
Sbjct: 94  PWLIVGLGNPGKKYQGTRHN-VGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLA 152

Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
           KPQT+MNLSGES G + ++YK+PL +VLV +DD+ LP G LRL   GGHGGHNG++S+++
Sbjct: 153 KPQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIID 212

Query: 138 NFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 187
             +          GIGRPPG+MD   F+L++FN   +E +D   Q G+E +++LL +G  
Sbjct: 213 RLKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFN 272

Query: 188 ESARHFNTIQKYKHI 202
           +SA   NT +  + +
Sbjct: 273 KSATFVNTRKSMEQL 287

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q9FKN4|CRS2A_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1

 Score =  216 bits (551), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 109/193 (56%), Positives = 134/193 (69%), Gaps = 11/193 (5%)

Query: 18  PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
           PWL VGLGNPG KY GTRHN +GFEMID  A +  ISMNT+  KA  G G VG+ P+LL 
Sbjct: 51  PWLIVGLGNPGLKYYGTRHN-IGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLV 109

Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
           KPQ YMN SGES GPLAAYY++PL  +L+ +DDMGL  GVLRL+  GGH  HNGLK+V  
Sbjct: 110 KPQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTE 169

Query: 138 NFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 187
           +            GIG PPG MD KAFLLQKF+ + R+++D  L++GVE +K L+ +G +
Sbjct: 170 HLNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFS 229

Query: 188 ESARHFNTIQKYK 200
           +S   FN  QKYK
Sbjct: 230 DSISRFNLGQKYK 242

Required for the splicing of group IIB introns in chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LF14|CRS2B_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1

 Score =  214 bits (546), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/193 (54%), Positives = 135/193 (69%), Gaps = 11/193 (5%)

Query: 18  PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
           PWL VGLGNPG+KY GTRHN VGFEMID  A  +G+ MNT+  KA  G G + D P+LLA
Sbjct: 45  PWLIVGLGNPGNKYHGTRHN-VGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLA 103

Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
           KPQTYMN SGES G LA++Y++PL  +L+ +D+M LP GVLRL+  GG G HNG+KSVM 
Sbjct: 104 KPQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMG 163

Query: 138 NFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 187
           +            GIG+PPG MD KAFLLQKF+ + +++I+ AL++G E +K L+  G  
Sbjct: 164 HLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFN 223

Query: 188 ESARHFNTIQKYK 200
           +    FN +QKYK
Sbjct: 224 QGISRFNLVQKYK 236

Required for the splicing of group IIB introns in chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5N9Q7|PTHM_ORYSJ Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1

 Score =  214 bits (546), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 101/196 (51%), Positives = 141/196 (71%), Gaps = 11/196 (5%)

Query: 17  RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLL 76
           +PWLFVGLGNPG  Y+GTRHN VGFEMID  AE++GIS++++  KA  G+G +GDAP++L
Sbjct: 54  KPWLFVGLGNPGKVYQGTRHN-VGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIML 112

Query: 77  AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVM 136
           AKPQT+MN SGES G L +Y+K+PLN+VLV +DD+ LP   LRL   GGHGGHNG++S++
Sbjct: 113 AKPQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSII 172

Query: 137 NNFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 186
           N+ +          GIGRPPG+MDP  F+L+ FN   +E +D A   G+E ++++  +G 
Sbjct: 173 NHLKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGF 232

Query: 187 TESARHFNTIQKYKHI 202
            +SA + NT Q  + +
Sbjct: 233 NKSATYVNTAQSSEML 248

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q10LI6|CRS2L_ORYSJ CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0347800 PE=2 SV=1

 Score =  174 bits (442), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 87/117 (74%), Positives = 95/117 (81%), Gaps = 1/117 (0%)

Query: 15  VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPV 74
           V  PWLFVGLGNPG+KY+ TRHN VGF+MID FA+SQGIS+     KA FG+G V   PV
Sbjct: 57  VINPWLFVGLGNPGEKYQCTRHN-VGFDMIDMFAQSQGISLTRHPFKALFGEGMVEGVPV 115

Query: 75  LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 131
           LLAKPQTYMNLSGES GPLAAYYKLPLNRVLV  DDM LPCGVLRL+  GG+G HNG
Sbjct: 116 LLAKPQTYMNLSGESVGPLAAYYKLPLNRVLVAFDDMDLPCGVLRLQPKGGYGRHNG 172

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q47SW2|PTH_THEFY Peptidyl-tRNA hydrolase OS=Thermobifida fusca (strain YX) GN=pth PE=3 SV=1

 Score =  155 bits (393), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/180 (41%), Positives = 111/180 (61%), Gaps = 10/180 (5%)

Query: 19  WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 78
           WL VGLGNPG KY G RHN VGF ++D  A  +G         A   +  VGDAPV+LAK
Sbjct: 35  WLVVGLGNPGPKYAGNRHN-VGFMVVDELAAQRGERWRLHKAHAQVVETRVGDAPVVLAK 93

Query: 79  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 138
           P +YMNLSG     L+A+YK+P++R++V HD++ +P   L+L+  GG  GHNGL+S+  +
Sbjct: 94  PASYMNLSGGPVAKLSAFYKVPVDRIIVVHDELDIPFARLKLKRGGGSAGHNGLRSITAS 153

Query: 139 F---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 189
                      GIGRPPG+MD  +F+LQ F+   R+ +D  +    + ++ +++ GL ++
Sbjct: 154 LGSPDYVRVRVGIGRPPGRMDAASFVLQDFSTAERKELDVHVARAADAVETVVTSGLEKA 213

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Thermobifida fusca (strain YX) (taxid: 269800)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|A8F920|PTH_BACP2 Peptidyl-tRNA hydrolase OS=Bacillus pumilus (strain SAFR-032) GN=pth PE=3 SV=1

 Score =  143 bits (360), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/183 (44%), Positives = 104/183 (56%), Gaps = 10/183 (5%)

Query: 21  FVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 80
           FVGLGNPG +Y+ TRHN VGF  ID  ++   I +N       FG GFV    VLL KP 
Sbjct: 4   FVGLGNPGKEYEKTRHN-VGFMTIDELSKKWDIPLNQSKFHGQFGTGFVSGQKVLLVKPL 62

Query: 81  TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVM---- 136
           TYMNLSGE   PL  YY +PL  + V +DD+ LP G +RLR  G  GGHNG+KS++    
Sbjct: 63  TYMNLSGECVRPLMDYYDIPLEHLKVIYDDLDLPTGRIRLRTKGSAGGHNGIKSLIQHLG 122

Query: 137 ----NNFR-GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESAR 191
               + FR GIGRP   M    ++L +F+   +  I +A+Q  VE  +  L+K   E   
Sbjct: 123 SPEFDRFRIGIGRPQNGMKVVDYVLGRFSEEEQPDIASAIQASVEACEAALTKPFLEVMN 182

Query: 192 HFN 194
            FN
Sbjct: 183 DFN 185

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Bacillus pumilus (strain SAFR-032) (taxid: 315750)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
225435751	217	PREDICTED: peptidyl-tRNA hydrolase, mito	0.980	0.944	0.800	2e-93
449452694	218	PREDICTED: peptidyl-tRNA hydrolase, mito	0.990	0.949	0.771	3e-91
449493540	218	PREDICTED: peptidyl-tRNA hydrolase, mito	0.990	0.949	0.767	6e-91
449493552	218	PREDICTED: peptidyl-tRNA hydrolase, mito	0.990	0.949	0.762	1e-90
449452658	218	PREDICTED: peptidyl-tRNA hydrolase, mito	0.990	0.949	0.762	2e-90
358248836	218	uncharacterized protein LOC100808506 [Gl	0.990	0.949	0.752	7e-90
356512501	217	PREDICTED: peptidyl-tRNA hydrolase, mito	0.990	0.953	0.733	8e-87
255582564	217	peptidyl-tRNA hydrolase, putative [Ricin	0.990	0.953	0.715	3e-84
224052908	222	predicted protein [Populus trichocarpa]	0.980	0.923	0.723	2e-83
297808049	218	aminoacyl-tRNA hydrolase [Arabidopsis ly	0.990	0.949	0.701	6e-81

>gi|225435751|ref|XP_002283606.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial [Vitis vinifera] gi|297746470|emb|CBI16526.3| unnamed protein product [Vitis vinifera]

 Score =  347 bits (889), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 173/216 (80%), Positives = 183/216 (84%), Gaps = 11/216 (5%)

Query: 2   LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCK 61
           ++NRF RR FCTA  RPWLFVGLGNPGDKYKGTRHN VGFEMI+AFAESQGI M+TVHCK
Sbjct: 1   MLNRFSRRLFCTASPRPWLFVGLGNPGDKYKGTRHN-VGFEMINAFAESQGIPMDTVHCK 59

Query: 62  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 121
           A FGQGFV   PV LAKPQTYMNLSGES GPLAAYYKLPLNRV+VFHDDM LPCGVLRL 
Sbjct: 60  AIFGQGFVDAVPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVVVFHDDMSLPCGVLRLH 119

Query: 122 HNGGHGGHNGLKSVMNNFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTAL 171
           H GGHG HNGLKSV+ +FR          GIG+PPGQMDPKAFLLQKF+A ARERID AL
Sbjct: 120 HKGGHGNHNGLKSVIYHFRGNREFPRLRIGIGKPPGQMDPKAFLLQKFSATARERIDAAL 179

Query: 172 QEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNM 207
           QEGV VLKLL SKGLTESAR FNT QKYKHIR+QNM
Sbjct: 180 QEGVGVLKLLSSKGLTESARCFNTEQKYKHIRVQNM 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452694|ref|XP_004144094.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis sativus]

 Score =  340 bits (871), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 169/219 (77%), Positives = 183/219 (83%), Gaps = 12/219 (5%)

Query: 2   LINRFLRRGFCTAVA-RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHC 60
           + ++  +RGFCTA++ RPWLFVGLGNPG+K++GTRHN VGFEMID FAES GISMN VHC
Sbjct: 1   MFSKLTKRGFCTAISSRPWLFVGLGNPGEKFRGTRHN-VGFEMIDVFAESIGISMNRVHC 59

Query: 61  KATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRL 120
           KA FG+GFVGD PV LAKPQTYMNLSGES GPLAAYYKLPLNRVLVFHDDM LPCGVLRL
Sbjct: 60  KAVFGEGFVGDIPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVLVFHDDMNLPCGVLRL 119

Query: 121 RHNGGHGGHNGLKSVMNNFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTA 170
           +HNGGHG HNGLKSV+ +FR          GIGRPPGQMDPKAFLLQKFN  A+ERIDTA
Sbjct: 120 QHNGGHGYHNGLKSVIYHFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNNTAQERIDTA 179

Query: 171 LQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 209
           LQEGV  LKLLLS  L ESARHFN  QKYKHIRLQ MP 
Sbjct: 180 LQEGVGALKLLLSHSLFESARHFNHEQKYKHIRLQTMPV 218

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493540|ref|XP_004159339.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis sativus]

 Score =  338 bits (868), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 168/219 (76%), Positives = 183/219 (83%), Gaps = 12/219 (5%)

Query: 2   LINRFLRRGFCTAVA-RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHC 60
           + ++  +RGFCTA++ RPWLFVGLGNPG+K++GTRHN VGFEMID FAES GI MN VHC
Sbjct: 1   MFSKLTKRGFCTAISSRPWLFVGLGNPGEKFRGTRHN-VGFEMIDVFAESVGIPMNRVHC 59

Query: 61  KATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRL 120
           KA FG+GFVGD PV LAKPQTYMNLSGES GPLAAYYKLPLNRVLVFHDDM LPCGVLRL
Sbjct: 60  KAVFGEGFVGDIPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVLVFHDDMTLPCGVLRL 119

Query: 121 RHNGGHGGHNGLKSVMNNFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTA 170
           +HNGGHG HNGLKSV+++FR          GIGRPPGQMDPKAFLLQKFN  A+ERIDTA
Sbjct: 120 QHNGGHGYHNGLKSVISHFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNNTAQERIDTA 179

Query: 171 LQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 209
           LQEGV  LKLLLS  L ESARHFN  QKYKHIRLQ MP 
Sbjct: 180 LQEGVGALKLLLSHSLFESARHFNHEQKYKHIRLQTMPV 218

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493552|ref|XP_004159345.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis sativus]

 Score =  337 bits (865), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 167/219 (76%), Positives = 182/219 (83%), Gaps = 12/219 (5%)

Query: 2   LINRFLRRGFCTAVA-RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHC 60
           + N+  +RGFCTA++ RPWLF+GLGNPG+K++GTRHN VGFEMID FAES GISMN VHC
Sbjct: 1   MFNKLTKRGFCTAISSRPWLFMGLGNPGEKFRGTRHN-VGFEMIDVFAESIGISMNRVHC 59

Query: 61  KATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRL 120
           KA FG+GFVGD PV LAKPQTYMNLSGES GPLAAYYKLPLNRVLVFHDDM LPCGVLRL
Sbjct: 60  KAVFGEGFVGDVPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVLVFHDDMNLPCGVLRL 119

Query: 121 RHNGGHGGHNGLKSVMNNFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTA 170
           +HNGGH  H GLKSV+ +FR          GIGRPPGQMD KAFLLQKFN  A+ERIDTA
Sbjct: 120 QHNGGHDYHKGLKSVIYHFRGNREFARLRIGIGRPPGQMDSKAFLLQKFNNTAQERIDTA 179

Query: 171 LQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 209
           LQEGV  LKLLLS GL+ESARHFN  QKYKHIRLQ MP 
Sbjct: 180 LQEGVGALKLLLSHGLSESARHFNHKQKYKHIRLQTMPV 218

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452658|ref|XP_004144076.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis sativus]

 Score =  337 bits (863), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 167/219 (76%), Positives = 182/219 (83%), Gaps = 12/219 (5%)

Query: 2   LINRFLRRGFCTAVA-RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHC 60
           + N+  +RGFCTA++ RPWLF+GLGNPG+K++GTRHN VGFEMID FAES GISMN VHC
Sbjct: 1   MFNKLTKRGFCTAISSRPWLFMGLGNPGEKFRGTRHN-VGFEMIDVFAESIGISMNRVHC 59

Query: 61  KATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRL 120
           KA FG+GFVGD PV LAKPQTYMNLSGES GPLAAYYKLPLNRVLVFHDDM LPCGVLRL
Sbjct: 60  KAVFGEGFVGDIPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVLVFHDDMNLPCGVLRL 119

Query: 121 RHNGGHGGHNGLKSVMNNFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTA 170
           +HNGGH  H GLKSV+ +FR          GIGRPPGQMD KAFLLQKFN  A+ERIDTA
Sbjct: 120 QHNGGHDYHKGLKSVIYHFRGNREFARLRIGIGRPPGQMDSKAFLLQKFNNTAQERIDTA 179

Query: 171 LQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 209
           LQEGV  LKLLLS GL+ESARHFN  QKYKHIRLQ MP 
Sbjct: 180 LQEGVGALKLLLSHGLSESARHFNHKQKYKHIRLQTMPV 218

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248836|ref|NP_001239948.1| uncharacterized protein LOC100808506 [Glycine max] gi|255645293|gb|ACU23143.1| unknown [Glycine max]

 Score =  335 bits (859), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 164/218 (75%), Positives = 180/218 (82%), Gaps = 11/218 (5%)

Query: 2   LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCK 61
           +++R  RR FCT   RPWLFVGLGNPGDK+KGTRHN VGFEMIDAFAESQGI M+TVH K
Sbjct: 1   MLHRLSRRCFCTFTPRPWLFVGLGNPGDKFKGTRHN-VGFEMIDAFAESQGIPMDTVHSK 59

Query: 62  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 121
           A FG+GFVG+ PV LAKPQTYMNLSGESTGPLAAYYKLPLN+VLVFHDDM LPCGVLRL 
Sbjct: 60  AIFGKGFVGEVPVFLAKPQTYMNLSGESTGPLAAYYKLPLNQVLVFHDDMNLPCGVLRLH 119

Query: 122 HNGGHGGHNGLKSVMNNFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTAL 171
             GGHG H GLKSV+ NFR          GIG PPGQMDPKAFLLQKFN  AR+RID AL
Sbjct: 120 DKGGHGSHKGLKSVIYNFRGNREFPRLRIGIGSPPGQMDPKAFLLQKFNVTARQRIDEAL 179

Query: 172 QEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 209
           QEG++ LKLLLSKGLTESA+ FN  QKYKH+R+QN+P 
Sbjct: 180 QEGIDALKLLLSKGLTESAKRFNKEQKYKHLRVQNLPV 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512501|ref|XP_003524957.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Glycine max]

 Score =  325 bits (833), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 160/218 (73%), Positives = 177/218 (81%), Gaps = 11/218 (5%)

Query: 2   LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCK 61
           ++NR  RR FCT   RPWLFVGLGNPG+K+KGTRHN VGFEMIDAFAESQGI M+TVH K
Sbjct: 1   MLNRLNRRFFCTVAPRPWLFVGLGNPGEKFKGTRHN-VGFEMIDAFAESQGIPMDTVHSK 59

Query: 62  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 121
           A  G+GFVG+ PV LAKPQTYMNLSGESTGPLAAYYKLPLN+VLVFHDDM LPCGVLRL 
Sbjct: 60  AISGKGFVGEVPVFLAKPQTYMNLSGESTGPLAAYYKLPLNQVLVFHDDMNLPCGVLRLH 119

Query: 122 HNGGHGGHNGLKSVMNNFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTAL 171
             GGHG H GLKSV+ +F+          GIG PPGQMDPKAFLLQKFN  AR+RID AL
Sbjct: 120 DKGGHGSHKGLKSVIYHFKGNREFPRLRIGIGSPPGQMDPKAFLLQKFNVTARQRIDEAL 179

Query: 172 QEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 209
           QEGV+ LKLLLSKGL  SA+ FN  QKYKH+R+QN+P 
Sbjct: 180 QEGVDALKLLLSKGLAVSAKRFNKEQKYKHLRVQNLPV 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582564|ref|XP_002532065.1| peptidyl-tRNA hydrolase, putative [Ricinus communis] gi|223528269|gb|EEF30320.1| peptidyl-tRNA hydrolase, putative [Ricinus communis]

 Score =  316 bits (810), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 156/218 (71%), Positives = 175/218 (80%), Gaps = 11/218 (5%)

Query: 2   LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCK 61
           ++N+  RR FCT  +RPWL VGLGNPGDKYKGTRHN VGFEMIDAFA+   I M+ +H K
Sbjct: 1   MLNKVCRRCFCTVASRPWLIVGLGNPGDKYKGTRHN-VGFEMIDAFAQLLQIPMDKLHSK 59

Query: 62  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 121
           A FG+GFVG+A VLLAKPQTYMNLSGES GPLAAYYKLPLNRV+V HDDM LPCGVLRL+
Sbjct: 60  AIFGEGFVGEASVLLAKPQTYMNLSGESAGPLAAYYKLPLNRVIVLHDDMDLPCGVLRLQ 119

Query: 122 HNGGHGGHNGLKSVMNNFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTAL 171
             GGHG HNGLKSV+++FR          GIGRPPGQMDPKAFLLQKFNA A++RIDTA+
Sbjct: 120 PKGGHGSHNGLKSVIHHFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNATAQKRIDTAI 179

Query: 172 QEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 209
            EG   LK +L KGLTE+AR FN  QKYKHIRLQ MP 
Sbjct: 180 PEGAAALKSILFKGLTETARCFNQEQKYKHIRLQTMPT 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224052908|ref|XP_002297632.1| predicted protein [Populus trichocarpa] gi|222844890|gb|EEE82437.1| predicted protein [Populus trichocarpa]

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 160/221 (72%), Positives = 175/221 (79%), Gaps = 16/221 (7%)

Query: 2   LINRFLRRGFCTAVA-----RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMN 56
           ++NR  RR FCTA A      PWLFVGLGNPG+K+KGTRHN VGFEMIDAFA S GISMN
Sbjct: 1   MLNRVSRRCFCTAAAAPTTLSPWLFVGLGNPGEKFKGTRHN-VGFEMIDAFAGSLGISMN 59

Query: 57  TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCG 116
              CKA FG+GFVGDAPVLLAKPQTYMNLSGES GPLAAYYKLPLNRV+VFHDDM LPCG
Sbjct: 60  IPLCKALFGEGFVGDAPVLLAKPQTYMNLSGESAGPLAAYYKLPLNRVIVFHDDMELPCG 119

Query: 117 VLRLRHNGGHGGHNGLKSVMNNFR----------GIGRPPGQMDPKAFLLQKFNAIARER 166
           VLRL+  GGHG H GLKSV+N+FR          GIGRPPGQMDPKAFLLQKFNA ARER
Sbjct: 120 VLRLQEKGGHGCHRGLKSVINHFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNATARER 179

Query: 167 IDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNM 207
           ID AL EGV  L+ +L +GLT +AR FN  QKYK+IR + M
Sbjct: 180 IDAALPEGVVALRCILFEGLTRTARWFNQEQKYKYIRSETM 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808049|ref|XP_002871908.1| aminoacyl-tRNA hydrolase [Arabidopsis lyrata subsp. lyrata] gi|297317745|gb|EFH48167.1| aminoacyl-tRNA hydrolase [Arabidopsis lyrata subsp. lyrata]

 Score =  305 bits (782), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 153/218 (70%), Positives = 171/218 (78%), Gaps = 11/218 (5%)

Query: 2   LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCK 61
           +++   RR +CT+V RPWLF+GLGNPGDKYKGTRHN +GFEMID FAES GI MN V+ K
Sbjct: 1   MLSMLSRRCYCTSVHRPWLFLGLGNPGDKYKGTRHN-IGFEMIDVFAESVGIQMNLVNFK 59

Query: 62  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 121
           A  GQGFV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLNRVLV HDDM LPCGVLRL+
Sbjct: 60  AIMGQGFVDDLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQ 119

Query: 122 HNGGHGGHNGLKSVMNNFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTAL 171
             GGHG HNGLKSVMN+FR          GIG PPGQMDPKAFLLQKF+  ARER+D AL
Sbjct: 120 EKGGHGCHNGLKSVMNHFRGNREFARLRIGIGNPPGQMDPKAFLLQKFSVPARERMDKAL 179

Query: 172 QEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 209
            EGV+ LKL+LSK   ES R FN  QKYKH+R   + A
Sbjct: 180 AEGVDALKLVLSKDFGESWRLFNVEQKYKHLRQHTIIA 217

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
TAIR|locus:2183234	219	AT5G19830 [Arabidopsis thalian	0.961	0.917	0.657	2.4e-67
TAIR|locus:2181412	240	AT5G16140 [Arabidopsis thalian	0.870	0.758	0.507	2.3e-46
TAIR|locus:2173298	250	AT5G38290 [Arabidopsis thalian	0.870	0.728	0.523	4.8e-46
TAIR|locus:2014134	288	AT1G18440 [Arabidopsis thalian	0.846	0.614	0.484	1.9e-44
TIGR_CMR|CHY_0196	187	CHY_0196 "peptidyl-tRNA hydrol	0.832	0.930	0.345	6.8e-24
UNIPROTKB|P65865	191	pth "Peptidyl-tRNA hydrolase"	0.837	0.916	0.349	1.6e-22
TIGR_CMR|BA_0050	186	BA_0050 "peptidyl-tRNA hydrola	0.837	0.940	0.345	2.6e-22
TIGR_CMR|DET_0595	189	DET_0595 "peptidyl-tRNA hydrol	0.837	0.925	0.335	5.5e-22
TIGR_CMR|GSU_0663	193	GSU_0663 "peptidyl-tRNA hydrol	0.818	0.886	0.354	2.5e-19
TIGR_CMR|SPO_0811	239	SPO_0811 "peptidyl-tRNA hydrol	0.822	0.719	0.322	5.3e-17

TAIR|locus:2183234 AT5G19830 [Arabidopsis thaliana (taxid:3702)]

 Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
 Identities = 140/213 (65%), Positives = 159/213 (74%)

Query:     2 LINRFLRRGFCTA-VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHC 60
             +++R  RR +CT+ V RPWLF+GLGNPGDKYKGTRHN +GFEMID FAES GI MN V+ 
Sbjct:     1 MLSRLSRRCYCTSSVHRPWLFLGLGNPGDKYKGTRHN-IGFEMIDVFAESVGIQMNLVNF 59

Query:    61 KATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXX 120
             KA  GQGFV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLNRVLV HDDM LPCGV   
Sbjct:    60 KAIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRL 119

Query:   121 XXXXXXXXXXXXKSVMNNFRG----------IGRPPGQMDPKAFLLQKFNAIARERIDTA 170
                         KSVMN+FRG          IG+PPGQMDPKAFLLQKF+  ARER+D A
Sbjct:   120 QEKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKA 179

Query:   171 LQEGVEVLKLLLSKGLTESARHFNTIQKYKHIR 203
             L EGV+ LKL+L+K   ES R FN  QKYKH++
Sbjct:   180 LAEGVDALKLVLAKDFGESWRLFNVEQKYKHLK 212

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006412 "translation" evidence=ISS

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2181412 AT5G16140 [Arabidopsis thaliana (taxid:3702)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 98/193 (50%), Positives = 125/193 (64%)

Query:    18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
             PWL VGLGNPG+KY GTRHN VGFEMID  A  +G+ MNT+  KA  G G + D P+LLA
Sbjct:    45 PWLIVGLGNPGNKYHGTRHN-VGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLA 103

Query:    78 KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMN 137
             KPQTYMN SGES G LA++Y++PL  +L+ +D+M LP GV               KSVM 
Sbjct:   104 KPQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMG 163

Query:   138 ------NFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 187
                   NF     GIG+PPG MD KAFLLQKF+ + +++I+ AL++G E +K L+  G  
Sbjct:   164 HLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFN 223

Query:   188 ESARHFNTIQKYK 200
             +    FN +QKYK
Sbjct:   224 QGISRFNLVQKYK 236

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2173298 AT5G38290 [Arabidopsis thaliana (taxid:3702)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 101/193 (52%), Positives = 125/193 (64%)

Query:    18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
             PWL VGLGNPG KY GTRHN +GFEMID  A +  ISMNT+  KA  G G VG+ P+LL 
Sbjct:    55 PWLIVGLGNPGLKYYGTRHN-IGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLV 113

Query:    78 KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV-- 135
             KPQ YMN SGES GPLAAYY++PL  +L+ +DDMGL  GV               K+V  
Sbjct:   114 KPQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTE 173

Query:   136 -MNNFRG-------IGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 187
              +N  RG       IG PPG MD KAFLLQKF+ + R+++D  L++GVE +K L+ +G +
Sbjct:   174 HLNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFS 233

Query:   188 ESARHFNTIQKYK 200
             +S   FN  QKYK
Sbjct:   234 DSISRFNLGQKYK 246

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006783 "heme biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

TAIR|locus:2014134 AT1G18440 [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 91/188 (48%), Positives = 127/188 (67%)

Query:    18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
             PWL VGLGNPG KY+GTRHN VGFEM+DA A+++GISMNTV+ KA FG+G +G+ P++LA
Sbjct:    94 PWLIVGLGNPGKKYQGTRHN-VGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLA 152

Query:    78 KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMN 137
             KPQT+MNLSGES G + ++YK+PL +VLV +DD+ LP G                +S+++
Sbjct:   153 KPQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIID 212

Query:   138 NFRG----------IGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 187
               +G          IGRPPG+MD   F+L++FN   +E +D   Q G+E +++LL +G  
Sbjct:   213 RLKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFN 272

Query:   188 ESARHFNT 195
             +SA   NT
Sbjct:   273 KSATFVNT 280

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006783 "heme biosynthetic process" evidence=RCA

TIGR_CMR|CHY_0196 CHY_0196 "peptidyl-tRNA hydrolase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 64/185 (34%), Positives = 97/185 (52%)

Query:    19 WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 78
             ++  GLGNPG +Y+ TRHN  GF ++D  A+  GI +     K+  G+G +    VLL K
Sbjct:     2 FIIAGLGNPGQEYENTRHN-AGFMVVDELAKKHGILITKRKFKSLVGEGEILGVKVLLLK 60

Query:    79 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 138
             PQTYMNLSG +     ++YKLPL+R++V +DD+ LP G                 S+++ 
Sbjct:    61 PQTYMNLSGTAVQEAVSFYKLPLSRLVVVYDDLDLPLGKIRLRLKGSAGGHRGMGSIISC 120

Query:   139 FR---------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 189
                        GIGRP    D K ++LQ F    RE ++  L+   E + + L++G  ++
Sbjct:   121 LGSEEIPRLKIGIGRP-AVGDVKDYVLQPFTGAEREILEPTLKLAAEAITVALTEGFNKA 179

Query:   190 ARHFN 194
                FN
Sbjct:   180 MTDFN 184

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P65865 pth "Peptidyl-tRNA hydrolase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 66/189 (34%), Positives = 95/189 (50%)

Query:    15 VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDA 72
             +A P L VGLGNPG  Y  TRHN +GF + D  A   G      H +  A    G     
Sbjct:     1 MAEPLLVVGLGNPGANYARTRHN-LGFVVADLLAARLGAKFKA-HKRSGAEVATGRSAGR 58

Query:    73 PVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXX 132
              ++LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G                
Sbjct:    59 SLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGL 118

Query:   133 KSVM-----NNFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLS 183
             +SV+      +F+    GIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ 
Sbjct:   119 RSVVAALGTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIE 178

Query:   184 KGLTESARH 192
             +G+ E A++
Sbjct:   179 QGM-EPAQN 186

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

TIGR_CMR|BA_0050 BA_0050 "peptidyl-tRNA hydrolase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 64/185 (34%), Positives = 95/185 (51%)

Query:    20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 79
             L VGLGNPG +Y+ TRHN +GF  ID  A+   IS+N    K  FG GFV    V+L KP
Sbjct:     3 LIVGLGNPGREYELTRHN-IGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKP 61

Query:    80 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN- 138
              TYMNLSGES  PL  YYK+ +   +V +DD+ +P G                KS +++ 
Sbjct:    62 LTYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL 121

Query:   139 ----FR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 190
                 F+    GI RP   M    ++L +F +     ++ ++++  +  +  L+K   +  
Sbjct:   122 GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIM 181

Query:   191 RHFNT 195
               FN+
Sbjct:   182 NTFNS 186

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|DET_0595 DET_0595 "peptidyl-tRNA hydrolase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 63/188 (33%), Positives = 91/188 (48%)

Query:    20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 79
             L +GLGNPG +Y G RHN VGF+ +  FA+   IS +   C +  G G + D  ++LAKP
Sbjct:     3 LIIGLGNPGKEYSGNRHN-VGFQCLSRFAKDNHISFDKKCCLSRTGSGRINDEEIVLAKP 61

Query:    80 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNF 139
             QTYMNLSG++   L   Y L    ++V  DD+ LP G                 S++ + 
Sbjct:    62 QTYMNLSGKAASQLLRRYNLKAADIIVVQDDLDLPAGKIRLRLGGSAGGHNGISSIITDI 121

Query:   140 R---------GIGRPPGQMDPKAFL---LQKFNAIARERIDTALQEGVEVLKLLLSKGLT 187
                       GIG+P  + +    +   L  F    RE +D A+    E L  LL+ GL 
Sbjct:   122 GTKEFIRLKIGIGKPDSRNNGTEVVDHVLGNFGGEEREIMDKAITRASEALTCLLTFGLD 181

Query:   188 ESARHFNT 195
              ++  FN+
Sbjct:   182 TASNRFNS 189

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|GSU_0663 GSU_0663 "peptidyl-tRNA hydrolase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 66/186 (35%), Positives = 92/186 (49%)

Query:    20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 79
             L VGLGNPG KY  TRHN  GF ++D  A + G S+        FG+G      +LL KP
Sbjct:     5 LIVGLGNPGPKYLWTRHN-AGFMVLDRLAHAIGASVTRKSFSGVFGEGAWHGERLLLLKP 63

Query:    80 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNF 139
             QTYMNLSG S      ++KLPL   +V HDD+ +P G                +S++   
Sbjct:    64 QTYMNLSGRSVAEALRFHKLPLCDTIVIHDDLDIPFGRVKVKEGGGHGGHNGLRSLVQEL 123

Query:   140 RG---------IGRPPGQMDPKAFLLQKFNAIARERIDTA-LQEG-VEVLKLLLSKGLTE 188
              G         IGRP    D   ++L  F+    E  D A L +G +++L+ LL+ GL +
Sbjct:   124 GGAGFVRVRVGIGRPV-HGDVVNYVLTNFSQ--DEMADLAHLLDGTLDLLESLLTAGLPK 180

Query:   189 SARHFN 194
             +   +N
Sbjct:   181 TMSLYN 186

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|SPO_0811 SPO_0811 "peptidyl-tRNA hydrolase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 60/186 (32%), Positives = 88/186 (47%)

Query:    20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 79
             LFVGLGNPG KY   RHN +GF  +D  AE  G     V  +    +G +G   VLL KP
Sbjct:     3 LFVGLGNPGAKYARNRHN-IGFMALDRIAEDHGFGPWRVKFQGQIAEGRLGREKVLLLKP 61

Query:    80 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNF 139
             +T+MN SG+S G    +YKL    + V HD++ L  G                +S+ ++ 
Sbjct:    62 ETFMNRSGQSVGEAMRFYKLDSTDITVLHDELDLAPGKVKVKAGGGHAGHNGLRSIHDHI 121

Query:   140 R--------GIGRPPGQMDPKA-FLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 190
                      GIG P G+ +  A ++L  F     + ++  L+ GV      L+ G  + A
Sbjct:   122 GAAYDRVRLGIGHP-GRKEAVAGYVLHDFARADEDWLEDVLR-GVSEGAPHLAAG--DGA 177

Query:   191 RHFNTI 196
             R  N++
Sbjct:   178 RFMNSV 183

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q63HI2	PTH_BACCZ	3, ., 1, ., 1, ., 2, 9	0.3945	0.8373	0.9408	yes	no
Q6NLS8	PTHM_ARATH	3, ., 1, ., 1, ., 2, 9	0.7089	0.9617	0.9178	yes	no
Q2J5Z1	PTH_FRASC	3, ., 1, ., 1, ., 2, 9	0.3664	0.8373	0.8883	yes	no
B8G3X3	PTH_CHLAD	3, ., 1, ., 1, ., 2, 9	0.3723	0.8468	0.9414	yes	no
A7GJD4	PTH_CLOBL	3, ., 1, ., 1, ., 2, 9	0.3670	0.8421	0.9312	yes	no
C0ZHD7	PTH_BREBN	3, ., 1, ., 1, ., 2, 9	0.3723	0.8516	0.9417	yes	no
A4T6N5	PTH_MYCGI	3, ., 1, ., 1, ., 2, 9	0.4010	0.8660	0.9427	yes	no
Q6MJR3	PTH_BDEBA	3, ., 1, ., 1, ., 2, 9	0.3957	0.8421	0.9411	yes	no
B9LE93	PTH_CHLSY	3, ., 1, ., 1, ., 2, 9	0.3670	0.8468	0.9414	yes	no
A1TEG1	PTH_MYCVP	3, ., 1, ., 1, ., 2, 9	0.4081	0.8612	0.9375	yes	no
B9IZD4	PTH_BACCQ	3, ., 1, ., 1, ., 2, 9	0.3945	0.8373	0.9408	yes	no
Q0RCD6	PTH_FRAAA	3, ., 1, ., 1, ., 2, 9	0.3563	0.8516	0.9035	yes	no
B1KTE2	PTH_CLOBM	3, ., 1, ., 1, ., 2, 9	0.3670	0.8421	0.9312	yes	no
Q0TMG7	PTH_CLOP1	3, ., 1, ., 1, ., 2, 9	0.3870	0.8325	0.9255	yes	no
C1FNE6	PTH_CLOBJ	3, ., 1, ., 1, ., 2, 9	0.3670	0.8421	0.9312	yes	no
B2TI10	PTH_CLOBB	3, ., 1, ., 1, ., 2, 9	0.3523	0.8660	0.9476	yes	no
Q9F8Q3	PTH_CARHZ	3, ., 1, ., 1, ., 2, 9	0.3891	0.8325	0.9304	yes	no
Q65PG8	PTH_BACLD	3, ., 1, ., 1, ., 2, 9	0.4021	0.8325	0.9255	yes	no
Q1B425	PTH_MYCSS	3, ., 1, ., 1, ., 2, 9	0.4043	0.8133	0.8854	yes	no
A7FPJ7	PTH_CLOB1	3, ., 1, ., 1, ., 2, 9	0.3670	0.8421	0.9312	yes	no
C3KW96	PTH_CLOB6	3, ., 1, ., 1, ., 2, 9	0.3670	0.8421	0.9312	yes	no
A8F920	PTH_BACP2	3, ., 1, ., 1, ., 2, 9	0.4426	0.8277	0.9202	yes	no
P37470	PTH_BACSU	3, ., 1, ., 1, ., 2, 9	0.4021	0.8325	0.9255	yes	no
B1IGZ7	PTH_CLOBK	3, ., 1, ., 1, ., 2, 9	0.3723	0.8421	0.9312	yes	no
A9WBS1	PTH_CHLAA	3, ., 1, ., 1, ., 2, 9	0.3670	0.8468	0.9414	yes	no
A9KR32	PTH_CLOPH	3, ., 1, ., 1, ., 2, 9	0.3675	0.8373	0.9162	yes	no
Q181A2	PTH_CLOD6	3, ., 1, ., 1, ., 2, 9	0.3891	0.8373	0.9408	yes	no
Q8XHJ8	PTH_CLOPE	3, ., 1, ., 1, ., 2, 9	0.3870	0.8325	0.9255	yes	no
Q3Z8W2	PTH_DEHE1	3, ., 1, ., 1, ., 2, 9	0.3829	0.8373	0.9259	yes	no
A5I7R5	PTH_CLOBH	3, ., 1, ., 1, ., 2, 9	0.3670	0.8421	0.9312	yes	no
A7GJW3	PTH_BACCN	3, ., 1, ., 1, ., 2, 9	0.4108	0.8373	0.9408	yes	no
Q5ZCL8	CRS2_ORYSJ	No assigned EC number	0.5544	0.8708	0.7027	yes	no
B2UXS9	PTH_CLOBA	3, ., 1, ., 1, ., 2, 9	0.3523	0.8660	0.9476	yes	no
Q6HPW6	PTH_BACHK	3, ., 1, ., 1, ., 2, 9	0.3945	0.8373	0.9408	yes	no
A0PXL3	PTH_CLONN	3, ., 1, ., 1, ., 2, 9	0.3891	0.8325	0.9255	yes	no
Q5L3U7	PTH_GEOKA	3, ., 1, ., 1, ., 2, 9	0.3858	0.8325	0.9354	yes	no
Q899I4	PTH_CLOTE	3, ., 1, ., 1, ., 2, 9	0.3723	0.8421	0.9361	yes	no
Q81VY9	PTH_BACAN	3, ., 1, ., 1, ., 2, 9	0.3945	0.8373	0.9408	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1.29	0.991
3rd Layer	3.1.1	0.976

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00024798001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (217 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018977001	RecName- Full=Ribose-phosphate pyrophosphokinase; EC=2.7.6.1; (322 aa)	•						•		0.795
	GSVIVG00015830001	RecName- Full=Ribose-phosphate pyrophosphokinase; EC=2.7.6.1; (321 aa)	•						•		0.791
	GSVIVG00025769001	SubName- Full=Chromosome chr19 scaffold_35, whole genome shotgun sequence; (365 aa)	•			•			•		0.719
	GSVIVG00020546001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (258 aa)							•		0.670
	GSVIVG00009701001	SubName- Full=Chromosome undetermined scaffold_245, whole genome shotgun sequence; (251 aa)	•								0.629
	GSVIVG00017183001	RecName- Full=Translation initiation factor IF-3;; IF-3 binds to the 30S ribosomal subunit and [...] (272 aa)							•		0.609
	GSVIVG00017298001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (339 aa)	•			•					0.602
	GSVIVG00007283001	SubName- Full=Chromosome chr2 scaffold_187, whole genome shotgun sequence; (682 aa)	•						•		0.594
	GSVIVG00002517001	SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (258 aa)	•								0.575
	GSVIVG00022142001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (195 aa)	•			•					0.544

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	209
cd02406	191	cd02406, CRS2, Chloroplast RNA splicing 2 (CRS2) i	1e-103
cd00462	171	cd00462, PTH, Peptidyl-tRNA hydrolase (PTH) is a m	3e-71
pfam01195	183	pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolas	5e-68
PRK05426	189	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provi	1e-66
COG0193	190	COG0193, Pth, Peptidyl-tRNA hydrolase [Translation	1e-64
TIGR00447	188	TIGR00447, pth, peptidyl-tRNA hydrolase	1e-51

>gnl|CDD|239090 cd02406, CRS2, Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast

 Score =  295 bits (756), Expect = e-103
 Identities = 117/192 (60%), Positives = 144/192 (75%), Gaps = 11/192 (5%)

Query: 17  RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLL 76
            PWL  GLGNPG+KYKGTRHN VGFEM+D  AE++GI+MNT+  K+  G G +GD PVLL
Sbjct: 1   TPWLIAGLGNPGNKYKGTRHN-VGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLL 59

Query: 77  AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVM 136
           AKPQTYMN SGES GPLAAYYK+PL  +LV +DDM LP GVLRL+  GGHG HNGL+SV+
Sbjct: 60  AKPQTYMNYSGESVGPLAAYYKVPLRHILVIYDDMSLPNGVLRLQPKGGHGRHNGLQSVI 119

Query: 137 NNFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 186
            +            GIG PPG+MDP+AFLLQKF++  RE+IDTAL++GV+ ++ L+ KG 
Sbjct: 120 EHLDGSREFPRLSIGIGSPPGKMDPRAFLLQKFSSEEREQIDTALEQGVDAVRTLVLKGF 179

Query: 187 TESARHFNTIQK 198
             SA  FN +QK
Sbjct: 180 NGSAERFNLVQK 191

CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH). Length = 191

>gnl|CDD|238259 cd00462, PTH, Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome

 Score =  213 bits (546), Expect = 3e-71
 Identities = 82/172 (47%), Positives = 110/172 (63%), Gaps = 10/172 (5%)

Query: 20  LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 79
           L VGLGNPG KY+ TRHN VGF ++DA AE  G+S      K   G+G +G   VLL KP
Sbjct: 1   LIVGLGNPGPKYENTRHN-VGFMVLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKP 59

Query: 80  QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 139
           QTYMNLSGE+   LA +YK+P   +LV HDD+ LP G +RL+  GG GGHNGLKS++ + 
Sbjct: 60  QTYMNLSGEAVAALANFYKIPPEDILVIHDDLDLPLGKIRLKKGGGSGGHNGLKSIIAHL 119

Query: 140 R---------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLL 182
                     GIGRPP +MD   ++L KF+   RE ++ A+++  + L+ +L
Sbjct: 120 GTEDFPRLRIGIGRPPNKMDVADYVLSKFSKEERELLEEAIEKAADALEDIL 171

This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts. Length = 171

>gnl|CDD|216355 pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolase

 Score =  205 bits (525), Expect = 5e-68
 Identities = 81/179 (45%), Positives = 111/179 (62%), Gaps = 11/179 (6%)

Query: 20  LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAK 78
           L VGLGNPG KY+ TRHN VGF +ID  AE  G+S+      K    +G +    V+L K
Sbjct: 1   LIVGLGNPGPKYENTRHN-VGFMVIDRLAERLGVSLKKKKKFKGLIAKGRIEGEKVILLK 59

Query: 79  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVM-- 136
           PQTYMNLSGE+   +A +YK+P   +LV HDD+ LP G LRL+  GG GGHNGLKS++  
Sbjct: 60  PQTYMNLSGEAVRAIARFYKIPPEDILVVHDDLDLPLGKLRLKKGGGAGGHNGLKSIIQH 119

Query: 137 ---NNFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 188
              N+F+    GIGRPP + D   ++L KF+    E +D A+++  + L+ L+  G  +
Sbjct: 120 LGTNDFKRLRIGIGRPPDKNDVADYVLSKFSPEELELLDKAIEKAADALEDLIEGGFDK 178

Length = 183

>gnl|CDD|235457 PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional

 Score =  202 bits (517), Expect = 1e-66
 Identities = 76/188 (40%), Positives = 109/188 (57%), Gaps = 12/188 (6%)

Query: 18  PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLL 76
             L VGLGNPG +Y  TRHN +GF ++D  A   G S+      K    +G +    V+L
Sbjct: 2   MKLIVGLGNPGPEYANTRHN-IGFMVVDELARRLGGSLKEKKKFKGLIAEGRINGEKVIL 60

Query: 77  AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVM 136
            KPQTYMNLSG++   LA +YK+P   +LV HDD+ LP G +RL+  GG GGHNGLKS++
Sbjct: 61  LKPQTYMNLSGKAVAALANFYKIPPEDILVIHDDLDLPPGKIRLKKGGGAGGHNGLKSII 120

Query: 137 -----NNFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 187
                 +F     GIGRP  +     ++L KF+   +E +D A+ +  + ++LLL  G  
Sbjct: 121 AHLGTQDFWRLRIGIGRPDKK-KVVDYVLGKFSKEEQELLDKAIDKAADAIELLLEGGFE 179

Query: 188 ESARHFNT 195
           ++   FN+
Sbjct: 180 KAMNKFNS 187

Length = 189

>gnl|CDD|223271 COG0193, Pth, Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

 Score =  197 bits (503), Expect = 1e-64
 Identities = 77/188 (40%), Positives = 105/188 (55%), Gaps = 11/188 (5%)

Query: 18  PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGIS-MNTVHCKATFGQGFVGDAPVLL 76
             L VGLGNPG KY  TRHN VGF ++D  A    +S            +G +    V+L
Sbjct: 2   MKLIVGLGNPGKKYAKTRHN-VGFMVVDLLARRLNLSFKEEKKFNGLVAKGTIEGEKVIL 60

Query: 77  AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVM 136
            KP TYMNLSG++ G LA++YK+    +LV HD++ LP G +RL+  GG GGHNGLKS++
Sbjct: 61  LKPTTYMNLSGKAVGALASFYKIKPEDILVVHDELDLPLGKVRLKLGGGAGGHNGLKSII 120

Query: 137 -----NNFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 187
                NNF     GIGRP    D   ++L KF+   RE +D A+ +  + L+LLL     
Sbjct: 121 AHLGTNNFYRLRIGIGRPGNGEDVADYVLGKFSKEERELLDKAIDKAADALELLLEGDFE 180

Query: 188 ESARHFNT 195
           ++    N 
Sbjct: 181 KAMNKLNA 188

Length = 190

>gnl|CDD|213531 TIGR00447, pth, peptidyl-tRNA hydrolase

 Score =  164 bits (417), Expect = 1e-51
 Identities = 76/176 (43%), Positives = 102/176 (57%), Gaps = 11/176 (6%)

Query: 20  LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCK-ATFGQGFVGDAPVLLAK 78
           L VGLGNPG KY GTRHN  GF ++D  A   G+S+ T         +G +    V+L K
Sbjct: 3   LIVGLGNPGKKYAGTRHN-AGFWVLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLK 61

Query: 79  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVM-- 136
           P TYMNLSGE+   LA++Y++    +LV HD++ LP G +RL+  GG GGHNGLKS++  
Sbjct: 62  PLTYMNLSGEAVRALASFYRIKPAELLVVHDELDLPLGKVRLKMGGGAGGHNGLKSIISH 121

Query: 137 ---NNFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 185
              NNF     GIG P G      F+L KF       ++ AL + VE L++  S+G
Sbjct: 122 LGTNNFNRLRIGIGSPGGSNKVVEFVLSKFTKSELPLLEKALDKAVEALEMSFSEG 177

The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function [Protein synthesis, Other]. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
COG0193	190	Pth Peptidyl-tRNA hydrolase [Translation, ribosoma	100.0
cd02406	191	CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclea	100.0
TIGR00447	188	pth peptidyl-tRNA hydrolase. The natural substrate	100.0
PRK05426	189	peptidyl-tRNA hydrolase; Provisional	100.0
PF01195	184	Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro	100.0
cd00462	171	PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric p	100.0
KOG2255	224	consensus Peptidyl-tRNA hydrolase [Translation, ri	100.0
cd06070	140	H2MP_like-2 Putative [NiFe] hydrogenase-specific C	94.97
PRK11544	156	hycI hydrogenase 3 maturation protease; Provisiona	93.6
cd06062	146	H2MP_MemB-H2up Endopeptidases belonging to membran	92.98
COG0680	160	HyaD Ni,Fe-hydrogenase maturation factor [Energy p	90.5
TIGR00130	153	frhD coenzyme F420-reducing hydrogenase delta subu	90.12
PRK12362	318	germination protease; Provisional	86.76
TIGR00142	146	hycI hydrogenase maturation protease HycI. Hydroge	86.09

>COG0193 Pth Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.2e-74  Score=483.17  Aligned_cols=179  Identities=41%  Similarity=0.745  Sum_probs=173.6

Q ss_pred             CCeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCC-CccccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHHH
Q 028433           17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA   95 (209)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~-~~~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~   95 (209)
                      .|+|||||||||++|+.|||| ||||++|.||++++.++ +.++|.++++++.+.+++|+|+||+||||+||++|.++++
T Consensus         1 ~~kLIVGLGNPG~~Y~~TRHN-vGf~~vD~La~~~~~~~~~~~kf~~~~~~~~i~g~kv~l~kP~TyMNlSG~~V~~~~~   79 (190)
T COG0193           1 MMKLIVGLGNPGKKYAKTRHN-VGFMVVDLLARRLNLSFKEEKKFNGLVAKGTIEGEKVILLKPTTYMNLSGKAVGALAS   79 (190)
T ss_pred             CcEEEEECCCCchhhcccchh-HHHHHHHHHHHHhCCCCccccccCceeEEEEeCCcEEEEecCccceeCcHHHHHHHHH
Confidence            478999999999999999999 99999999999999998 5678999999999999999999999999999999999999


Q ss_pred             hcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhcC---------CCCCCCCCCCccccccCcCCHHHHHH
Q 028433           96 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR---------GIGRPPGQMDPKAFLLQKFNAIARER  166 (209)
Q Consensus        96 ~~ki~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~Lg---------GIGrP~~~~~v~~yVLs~fs~~E~~~  166 (209)
                      ||+++|++|||||||||||+|++|+|.+||+|||||||||+++||         |||||+.+++|++|||++|+++|++.
T Consensus        80 fy~i~~~~ilVvhDdLdl~~G~vrlk~~Gg~gGHNGlKSi~~~lGt~~f~RlRiGIGrP~~~~~v~~~VL~~f~~~E~~~  159 (190)
T COG0193          80 FYKIKPEDILVVHDELDLPLGKVRLKLGGGAGGHNGLKSIIAHLGTNNFYRLRIGIGRPGNGEDVADYVLGKFSKEEREL  159 (190)
T ss_pred             HhCCCHHHEEEEeeccCCCCceEEEEcCCCCCCcccHHHHHHHhCCCccceEEEEcCCCCCCCchhHhhcCCCCHHHHHH
Confidence            999999999999999999999999999999999999999999999         99999888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHhhhch
Q 028433          167 IDTALQEGVEVLKLLLSKGLTESARHFNTI  196 (209)
Q Consensus       167 l~~~i~~~~~al~~~l~~~~~~amn~~N~~  196 (209)
                      |++++++++++++.|++.++++|||+||+.
T Consensus       160 l~~~~~~a~~~~~~~~~~~~~~~mn~~~~~  189 (190)
T COG0193         160 LDKAIDKAADALELLLEGDFEKAMNKLNAL  189 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence            999999999999999999999999999974

>cd02406 CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast

Probab=100.00  E-value=5.9e-73  Score=478.92  Aligned_cols=180  Identities=64%  Similarity=1.127  Sum_probs=172.5

Q ss_pred             CCeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHHHh
Q 028433           17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   96 (209)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~   96 (209)
                      .|+|||||||||++|++|||| |||+++|.||+++++++++.+++++++++.+.+++|+|+||+||||+||+||+++++|
T Consensus         1 ~~~LIvGLGNPG~~Y~~TRHN-iGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~   79 (191)
T cd02406           1 TPWLIAGLGNPGNKYKGTRHN-VGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLLAKPQTYMNYSGESVGPLAAY   79 (191)
T ss_pred             CcEEEEEcCCCchhhCcCchh-HHHHHHHHHHHHcCCCccccccceEEEEEEECCeEEEEEeCCCchhcCHHHHHHHHHH
Confidence            478999999999999999999 9999999999999998876788899999999999999999999999999999999999


Q ss_pred             cCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhc-C---------CCCCCCCCCCccccccCcCCHHHHHH
Q 028433           97 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF-R---------GIGRPPGQMDPKAFLLQKFNAIARER  166 (209)
Q Consensus        97 ~ki~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~L-g---------GIGrP~~~~~v~~yVLs~fs~~E~~~  166 (209)
                      |+++++++||||||||||+|++|+|.+||+|||||||||+++| |         |||||+.+.++++|||++|+++|++.
T Consensus        80 yki~~~~ilVihDdldl~~G~irlk~gGs~gGHNGlkSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVL~~f~~~E~~~  159 (191)
T cd02406          80 YKVPLRHILVIYDDMSLPNGVLRLQPKGGHGRHNGLQSVIEHLDGSREFPRLSIGIGSPPGKMDPRAFLLQKFSSEEREQ  159 (191)
T ss_pred             hCCCHHHEEEEEECCCCCCCeEEEcCCCCCCCcCCHHHHHHHhCCCCCeEEEEEEeCCCCCCCchhhhhcCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999 5         99999776789999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHhhhchh
Q 028433          167 IDTALQEGVEVLKLLLSKGLTESARHFNTIQ  197 (209)
Q Consensus       167 l~~~i~~~~~al~~~l~~~~~~amn~~N~~~  197 (209)
                      |+++++.++++++.|+.+++++|||+||+.+
T Consensus       160 l~~~~~~a~~~~~~~~~~~~~~~~n~~n~~~  190 (191)
T cd02406         160 IDTALEQGVDAVRTLVLKGFNGSAERFNLVQ  190 (191)
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHhCCC
Confidence            9999999999999999999999999999754

CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH).

>TIGR00447 pth peptidyl-tRNA hydrolase

Probab=100.00  E-value=4e-71  Score=466.75  Aligned_cols=177  Identities=42%  Similarity=0.743  Sum_probs=169.6

Q ss_pred             CeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHHHh
Q 028433           18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   96 (209)
Q Consensus        18 ~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~-~~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~   96 (209)
                      |+|||||||||++|++|||| ||||++|.||++++.+++ +.++.+++++..+.+++|+|+||+||||+||++|+++++|
T Consensus         1 ~~LIvGLGNPG~~Y~~TRHN-iGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~   79 (188)
T TIGR00447         1 IKLIVGLGNPGKKYAGTRHN-AGFWVLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLKPLTYMNLSGEAVRALASF   79 (188)
T ss_pred             CEEEEEeCCCchhhCcCchH-HHHHHHHHHHHHcCcCCcccccceEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHH
Confidence            68999999999999999999 999999999999998876 3567788888889999999999999999999999999999


Q ss_pred             cCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhcC---------CCCCCCCCCCccccccCcCCHHHHHHH
Q 028433           97 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR---------GIGRPPGQMDPKAFLLQKFNAIARERI  167 (209)
Q Consensus        97 ~ki~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~Lg---------GIGrP~~~~~v~~yVLs~fs~~E~~~l  167 (209)
                      |+++++++||||||||||+|++|+|++||+|||||||||+++||         |||||+.+.++++|||++|+++|++.+
T Consensus        80 ~~i~~~~ilVihDdldl~~G~irlk~~G~~gGHNGlkSI~~~lgt~~f~RlrIGIGrP~~~~~v~~yVL~~f~~~e~~~l  159 (188)
T TIGR00447        80 YRIKPAELLVVHDELDLPLGKVRLKMGGGAGGHNGLKSIISHLGTNNFNRLRIGIGSPGGSNKVVEFVLSKFTKSELPLL  159 (188)
T ss_pred             hCCChHHEEEEEecCCCCCceEEEecCCCCCCcCCHHHHHHHhCCCCcceEEEEeCCCCCCCchhhhccCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999         999998777899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcC-HHHHHHhhhc
Q 028433          168 DTALQEGVEVLKLLLSKG-LTESARHFNT  195 (209)
Q Consensus       168 ~~~i~~~~~al~~~l~~~-~~~amn~~N~  195 (209)
                      +++++.++++++.|++++ +++|||+||+
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~~~~~n~~n~  188 (188)
T TIGR00447       160 EKALDKAVEALEMSFSEGAFLKAMNRFNS  188 (188)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHhhC
Confidence            999999999999999988 9999999985

The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function.

>PRK05426 peptidyl-tRNA hydrolase; Provisional

Probab=100.00  E-value=1.4e-69  Score=457.61  Aligned_cols=178  Identities=42%  Similarity=0.772  Sum_probs=169.5

Q ss_pred             CCeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHHH
Q 028433           17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA   95 (209)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~-~~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~   95 (209)
                      +|+|||||||||++|++|||| |||+++|.||++++..+. ..++.+.++++.+.+++++|+||+||||+||++|.++++
T Consensus         1 ~~~LivGLGNPG~~Y~~TRHN-vGf~~ld~la~~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~   79 (189)
T PRK05426          1 MMKLIVGLGNPGPEYANTRHN-IGFMVVDELARRLGGSLKEKKKFKGLIAEGRINGEKVILLKPQTYMNLSGKAVAALAN   79 (189)
T ss_pred             CcEEEEEeCCCchhhCcCchH-HHHHHHHHHHHHcCCCCcccccccEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHH
Confidence            379999999999999999999 999999999999887654 457788999999988999999999999999999999999


Q ss_pred             hcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhcC---------CCCCCCCCCCccccccCcCCHHHHHH
Q 028433           96 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR---------GIGRPPGQMDPKAFLLQKFNAIARER  166 (209)
Q Consensus        96 ~~ki~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~Lg---------GIGrP~~~~~v~~yVLs~fs~~E~~~  166 (209)
                      ||++++++++|||||+|+|+|++|+|.+||+|||||||||+++||         |||||+ ..++++|||++|+++|++.
T Consensus        80 ~~~i~~~~ilVihDdldl~~G~~r~k~gGs~~GHNGlkSI~~~lgt~~f~RlriGIGrP~-~~~v~~yVL~~f~~~E~~~  158 (189)
T PRK05426         80 FYKIPPEDILVIHDDLDLPPGKIRLKKGGGAGGHNGLKSIIAHLGTQDFWRLRIGIGRPD-KKKVVDYVLGKFSKEEQEL  158 (189)
T ss_pred             HhCCCHHHEEEEEecCCCCCceEEEecCCCCCCcCCHHHHHHHhCCCCeeEEEEEeCCCC-CCCcchhhcCCCCHHHHHH
Confidence            999999999999999999999999999999999999999999999         999997 5679999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHhhhch
Q 028433          167 IDTALQEGVEVLKLLLSKGLTESARHFNTI  196 (209)
Q Consensus       167 l~~~i~~~~~al~~~l~~~~~~amn~~N~~  196 (209)
                      ++++++.|+++++.|++++++++||+||++
T Consensus       159 l~~~~~~a~~~v~~~~~~~~~~~~~~~n~~  188 (189)
T PRK05426        159 LDKAIDKAADAIELLLEGGFEKAMNKFNSK  188 (189)
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence            999999999999999999999999999964

>PF01195 Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro: IPR001328 Peptidyl-tRNA hydrolase (3

Probab=100.00  E-value=3.6e-68  Score=446.67  Aligned_cols=174  Identities=43%  Similarity=0.819  Sum_probs=154.7

Q ss_pred             eEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCcc-ccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHHHhcC
Q 028433           20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYK   98 (209)
Q Consensus        20 LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~-k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~k   98 (209)
                      |||||||||++|++|||| |||+++|+||++++.++... ++++.++++.+.+++++|+||+||||+||++|++++++|+
T Consensus         1 LivGLGNPG~~Y~~TRHN-vG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~   79 (184)
T PF01195_consen    1 LIVGLGNPGPKYENTRHN-VGFMVLDRLASRLGLSWKQKKKFKSLISEGSIKGEKVILLKPQTYMNLSGKAVKKILSFYK   79 (184)
T ss_dssp             EEEE---SSTTTTTSGGG-HHHHHHHHHHHHTT---EEEGGGTEEEEEEEETTEEEEEEEESSTGGGHHHHHHHHHHHTT
T ss_pred             CEEEcCCCChhhcCCCcC-chHHHHHHHHHHhCCCccccccceeEEEEEEEeeeeEEEEcCCCeEeCccHhHHHHHHHhC
Confidence            799999999999999999 99999999999999888654 4788899888999999999999999999999999999999


Q ss_pred             CCCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhcC---------CCCCCCCCCCccccccCcCCHHHHHHHHH
Q 028433           99 LPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR---------GIGRPPGQMDPKAFLLQKFNAIARERIDT  169 (209)
Q Consensus        99 i~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~Lg---------GIGrP~~~~~v~~yVLs~fs~~E~~~l~~  169 (209)
                      +++++++|||||+|+|+|++|+|++||+|||||||||+++||         |||||+.+.++++|||++|+++|++.+++
T Consensus        80 i~~~~ilVihDdldl~~G~irlk~~Gs~~GHNGlkSI~~~Lgt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~  159 (184)
T PF01195_consen   80 IPPENILVIHDDLDLPLGKIRLKKGGSSGGHNGLKSIIQHLGTEDFPRLRIGIGRPPSKEDVADYVLSKFSPEERELLDK  159 (184)
T ss_dssp             --GGGEEEEEEETTSSTTEEEEEESS--TT-HHHHHHHHHCTSSGSEEEEEEE--TSTTSGHHHHHTSB-HHHHHHHHHH
T ss_pred             CCcceEEEEEeccCCCCCeEEEccCCCCCCCCCHHHHHHHhccccceeEEEecCCCCCcchHHHHHhcCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999         99999877889999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHhhh
Q 028433          170 ALQEGVEVLKLLLSKGLTESARHFN  194 (209)
Q Consensus       170 ~i~~~~~al~~~l~~~~~~amn~~N  194 (209)
                      +++.|+++++.|+++++++|||+||
T Consensus       160 ~~~~a~~~l~~~i~~~~~~~mn~~n  184 (184)
T PF01195_consen  160 VIPQAAEALEQIIEGGFEKAMNKFN  184 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHhC
Confidence            9999999999999999999999998

1.1.29 from EC) (PTH) is a bacterial enzyme that cleaves peptidyl-tRNA or N-acyl-aminoacyl-tRNA to yield free peptides or N-acyl-amino acids and tRNA. The natural substrate for this enzyme may be peptidyl-tRNA which drop off the ribosome during protein synthesis [, ]. Bacterial PTH has been found to be evolutionary related to a yeast protein [].; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 3KJZ_A 3KK0_A 3P2J_A 3V2I_A 3TCN_A 3TD6_A 2Z2K_A 3TD2_A 2Z2J_B 2JRC_A ....

>cd00462 PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome

Probab=100.00  E-value=9.1e-68  Score=440.57  Aligned_cols=162  Identities=51%  Similarity=0.916  Sum_probs=156.0

Q ss_pred             eEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHHHhcCC
Q 028433           20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL   99 (209)
Q Consensus        20 LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~ki   99 (209)
                      |||||||||++|++|||| ||||++|+||++++.++.+.++.++++++.+.+++++|+||+||||+||++|.++++||++
T Consensus         1 LIvGLGNPG~~Y~~TRHN-vGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~~i   79 (171)
T cd00462           1 LIVGLGNPGPKYENTRHN-VGFMVLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKPQTYMNLSGEAVAALANFYKI   79 (171)
T ss_pred             CEEEECCCCcccCcCchH-HHHHHHHHHHHHcCCCCCccccCEEEEEEEECCEEEEEEeCCcccccccHHHHHHHHhcCC
Confidence            799999999999999999 9999999999999998877777899999999999999999999999999999999999999


Q ss_pred             CCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhcC---------CCCCCCCCCCccccccCcCCHHHHHHHHHH
Q 028433          100 PLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR---------GIGRPPGQMDPKAFLLQKFNAIARERIDTA  170 (209)
Q Consensus       100 ~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~Lg---------GIGrP~~~~~v~~yVLs~fs~~E~~~l~~~  170 (209)
                      +++++||||||||||+|++|+|++||+|||||||||+++||         |||||+.+.++++|||++|+++|++.++++
T Consensus        80 ~~~~ilVihDdldl~~G~vrlk~~G~~gGHNGlkSI~~~lgt~~f~RlriGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~  159 (171)
T cd00462          80 PPEDILVIHDDLDLPLGKIRLKKGGGSGGHNGLKSIIAHLGTEDFPRLRIGIGRPPNKMDVADYVLSKFSKEERELLEEA  159 (171)
T ss_pred             ChhHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHhCCCCeeEEEEEeCCCCCCCChhhhhcCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999         999998777999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028433          171 LQEGVEVLKLLL  182 (209)
Q Consensus       171 i~~~~~al~~~l  182 (209)
                      ++.++++++.|+
T Consensus       160 ~~~~~~~~~~~~  171 (171)
T cd00462         160 IEKAADALEDIL  171 (171)
T ss_pred             HHHHHHHHHHhC
Confidence            999999998763

This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts.

>KOG2255 consensus Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.6e-52  Score=350.48  Aligned_cols=172  Identities=56%  Similarity=0.993  Sum_probs=153.0

Q ss_pred             CeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHHHhc
Q 028433           18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   97 (209)
Q Consensus        18 ~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~   97 (209)
                      +|+|+||||||++|..|||| |||.++|.||++.+++..+...++..+-+.+++..++|++|++|||.||++|.+++..|
T Consensus        39 ~wli~GLGNPg~~y~gTRHn-vG~~Ml~~larrlgv~~nt~s~~a~~~l~~v~d~~~~llrp~qymN~SgesV~kva~~y  117 (224)
T KOG2255|consen   39 PWLIVGLGNPGSKYVGTRHN-VGFEMLDMLARRLGVPMNTISSKALEGLGLVGDVPILLLRPQQYMNFSGESVGKVAALY  117 (224)
T ss_pred             ceEEEecCCCcccccccchh-hHHHHHHHHHHHhCCcccccCcccccceeeecceeeEeeCcHhhhccccchhhhhHHhh
Confidence            58999999999999999999 99999999999999986655556666777888999999999999999999999999999


Q ss_pred             CCCCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhcC----------CCCCCCCCCCccccccCcCCHHHHH-H
Q 028433           98 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR----------GIGRPPGQMDPKAFLLQKFNAIARE-R  166 (209)
Q Consensus        98 ki~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~Lg----------GIGrP~~~~~v~~yVLs~fs~~E~~-~  166 (209)
                      +++.++++||||||++|+|++|+|++||++||||+||++.+++          |||||++++|+.+|||++|++.|++ .
T Consensus       118 ~i~~~~ivvIhDEl~l~~Gkl~Lrp~gs~rgHNGvrs~~~~l~g~~~fpRL~iGIGrppg~~d~~a~vLskfsp~e~ke~  197 (224)
T KOG2255|consen  118 KIPLRHIVVIHDELELPLGKLRLRPGGSHRGHNGVRSVFNCLNGRRSFPRLSIGIGRPPGNEDVKAFVLSKFSPAEQKEL  197 (224)
T ss_pred             cchheeEEEEeccccCcCceEEeccCCCccccccHHHHHhhccCCcccceeeeecCCCCCchhhhHHHHHhcChhhhHHH
Confidence            9999999999999999999999999999999999999999998          9999999999999999999999998 5


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHhhh
Q 028433          167 IDTALQEGVEVLKLLLSKGLTESARHFN  194 (209)
Q Consensus       167 l~~~i~~~~~al~~~l~~~~~~amn~~N  194 (209)
                      |+..++.+    +.++.+++..-.++||
T Consensus       198 Let~l~~~----~~lil~~l~~~is~~~  221 (224)
T KOG2255|consen  198 LETLLEHV----KTLILQGLQQSISRFN  221 (224)
T ss_pred             HHHHHhhh----HHHHHHHHHHhcccCc
Confidence            55555444    4444455656666665

>cd06070 H2MP_like-2 Putative [NiFe] hydrogenase-specific C-terminal protease

Probab=94.97  E-value=0.26  Score=39.41  Aligned_cols=85  Identities=18%  Similarity=0.216  Sum_probs=51.4

Q ss_pred             eEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHHHhcCC
Q 028433           20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL   99 (209)
Q Consensus        20 LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~ki   99 (209)
                      ||+|+|||=..    -= .+|..++++|++ .++                     -++.       .|.....++.++  
T Consensus         1 lVlGiGN~l~~----DD-g~G~~v~~~L~~-~~v---------------------~vi~-------~g~~~~~ll~~i--   44 (140)
T cd06070           1 LIIGVGNRLYG----DD-GFGSCLAEALEQ-CGA---------------------PVFD-------GGLDGFGLLSHL--   44 (140)
T ss_pred             CEEEECchhcc----cC-cHHHHHHHHHhh-CCC---------------------EEEE-------CCCcHHHHHHHH--
Confidence            69999999532    22 399999999976 111                     0011       111222333333  


Q ss_pred             CCCceEEEeecCC--CCCceEEEecC---------CCCCCCC-chHHHHHhcC
Q 028433          100 PLNRVLVFHDDMG--LPCGVLRLRHN---------GGHGGHN-GLKSVMNNFR  140 (209)
Q Consensus       100 ~~~~ilVvhDDld--lp~G~irlk~g---------Gs~gGHN-GLkSIi~~Lg  140 (209)
                      ...+.+||.|=++  .++|.++++..         .+...|. |+.++.+.+.
T Consensus        45 ~~~d~viiVDA~~~~~~pG~~~~~~~~~~~~~~~~~~~s~H~~~l~~~l~~~~   97 (140)
T cd06070          45 ENYDIVIFIDVAVIDEDVGVFKITPEPASVAEQISFETDAHRLGPAHLLLLLK   97 (140)
T ss_pred             cCCCEEEEEEeecCCCCCeEEEEecCchhccccccCCCCCCcCCHHHHHHHHH
Confidence            2455677777654  68998888653         2235788 9998876655

Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.

>PRK11544 hycI hydrogenase 3 maturation protease; Provisional

Probab=93.60  E-value=1.2  Score=36.36  Aligned_cols=130  Identities=15%  Similarity=0.152  Sum_probs=66.5

Q ss_pred             eeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHHHhcC
Q 028433           19 WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYK   98 (209)
Q Consensus        19 ~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~k   98 (209)
                      .+|+|+|||-..    -= -+|..++++|++.. .  .    .            +.++.=.|    .|.-+....+.+ 
T Consensus         3 ~lVlGiGN~L~g----DD-GvG~~v~~~L~~~~-~--~----~------------v~vid~gt----~~~~~~~~i~~~-   53 (156)
T PRK11544          3 DVVLTVGNSMMG----DD-GAGPLLAEKLAAAP-K--G----G------------WVVIDGGS----APENDIVAIREL-   53 (156)
T ss_pred             EEEEEeCccccc----cC-cHHHHHHHHHhccC-C--C----C------------eEEEECCC----CHHHHHHHHHhc-
Confidence            589999999532    22 49999999997642 1  1    0            11111111    122111122211 


Q ss_pred             CCCCceEEEeec--CCCCCceEEEecCC------CCCCCC-chHHHHHhcCCCCCCCCC----CCcccccc-CcCCHHHH
Q 028433           99 LPLNRVLVFHDD--MGLPCGVLRLRHNG------GHGGHN-GLKSVMNNFRGIGRPPGQ----MDPKAFLL-QKFNAIAR  164 (209)
Q Consensus        99 i~~~~ilVvhDD--ldlp~G~irlk~gG------s~gGHN-GLkSIi~~LgGIGrP~~~----~~v~~yVL-s~fs~~E~  164 (209)
                       .+ +.+||.|=  .+.++|+++.-...      +..-|. ||..+++.+.|  +++.-    ..+.++=+ ..+|++= 
T Consensus        54 -~~-d~vIiVDA~~~g~~PG~v~~~~~~~~~~~~~~s~H~~~l~~~l~~l~~--~~p~v~iigI~~~~~~~g~~LS~~v-  128 (156)
T PRK11544         54 -RP-ERLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLKE--DVPEVIFLGIQPDIVGFYYPMTQPV-  128 (156)
T ss_pred             -CC-CEEEEEECCccCcCCCEEEEEchhhcccccCCCCCcCCHHHHHHHHhc--CCCcEEEEEEEeeeccCCCCCCHHH-
Confidence             23 55666674  56799999874211      123555 78888877663  33210    01112211 2444444 


Q ss_pred             HHHHHHHHHHHHHHHHHHhcC
Q 028433          165 ERIDTALQEGVEVLKLLLSKG  185 (209)
Q Consensus       165 ~~l~~~i~~~~~al~~~l~~~  185 (209)
                         +++++++++.++.|...+
T Consensus       129 ---~~av~~~~~~l~~~~~~~  146 (156)
T PRK11544        129 ---KDAVETVYQRLEGWEGNG  146 (156)
T ss_pred             ---HHHHHHHHHHHHHhhccC
Confidence               445566666777776543

>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group

Probab=92.98  E-value=3.2  Score=33.21  Aligned_cols=124  Identities=20%  Similarity=0.270  Sum_probs=64.4

Q ss_pred             eEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHHHhcCC
Q 028433           20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL   99 (209)
Q Consensus        20 LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~ki   99 (209)
                      +|+|+|||-..    -= .+|..++++|++++.....                 +.+      ++ .|.....++..+  
T Consensus         2 lV~GiGN~l~g----DD-G~G~~va~~L~~~~~~~~~-----------------v~v------i~-~~~~~~~l~~~l--   50 (146)
T cd06062           2 LVLGIGNILLA----DE-GIGVHAVERLEENYSFPEN-----------------VEL------ID-GGTLGLELLPYI--   50 (146)
T ss_pred             EEEEECccccc----cC-cHHHHHHHHHHHhcCCCCC-----------------eEE------EE-CCCCHHHHHHHH--
Confidence            79999999422    12 4999999999877532210                 101      11 011112222222  


Q ss_pred             CCCceEEEeecC--CCCCceEEEecC---------CCCCCCCchHHHHHhcCCCCCCCCCC-----Ccccccc-CcCCHH
Q 028433          100 PLNRVLVFHDDM--GLPCGVLRLRHN---------GGHGGHNGLKSVMNNFRGIGRPPGQM-----DPKAFLL-QKFNAI  162 (209)
Q Consensus       100 ~~~~ilVvhDDl--dlp~G~irlk~g---------Gs~gGHNGLkSIi~~LgGIGrP~~~~-----~v~~yVL-s~fs~~  162 (209)
                      ...+.+|+.|=+  +.++|+++.-..         ..+.-+-++..+++.+.=.|+++.+.     .+.++=. ..+|++
T Consensus        51 ~~~d~viiVDA~~~g~~pG~i~~~~~~~~~~~~~~~~s~H~~~l~~~l~~~~~~~~~~~~v~ivgie~~~~~~g~~LS~~  130 (146)
T cd06062          51 EEADRLIIVDAVDAGGPPGTVYRFEGEDVPAFLSAKLSAHQVGLLEVLALAELLGDLPPEIVLIGVQPESIEWGLELSPE  130 (146)
T ss_pred             hcCCEEEEEEcccCCCCCCeEEEEechhccccccCCcCcccCCHHHHHHHHHHcCCCCCeEEEEEEEEeeccCCCCCCHH
Confidence            124677777864  779999876421         12334446787777655223322111     1111111 366666


Q ss_pred             HHHHHHHHHHHH
Q 028433          163 ARERIDTALQEG  174 (209)
Q Consensus       163 E~~~l~~~i~~~  174 (209)
                      =++.++++++.+
T Consensus       131 v~~av~~~~~~i  142 (146)
T cd06062         131 VAAALPTAIEAV  142 (146)
T ss_pred             HHHHHHHHHHHH
Confidence            666665555443

These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.

>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]

Probab=90.50  E-value=7  Score=32.37  Aligned_cols=130  Identities=17%  Similarity=0.179  Sum_probs=72.9

Q ss_pred             CCeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeC-CchhhhchhhHHHHHH
Q 028433           17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP-QTYMNLSGESTGPLAA   95 (209)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP-~TyMNlSG~aV~~~~~   95 (209)
                      ++.+|+|+|||=-    .-== +|-.++++|.+++...-                 .|-++.= +--+|+.+.       
T Consensus         2 ~~ilIlG~GN~L~----~DDG-~Gv~vae~L~~~~~~~~-----------------~v~vid~Gt~~~~l~~~-------   52 (160)
T COG0680           2 MRILILGVGNILM----GDDG-FGVRVAEKLKKRYKPPE-----------------NVEVIDGGTAGPNLLGL-------   52 (160)
T ss_pred             CeEEEEeeCCccc----ccCc-ccHHHHHHHHHhcCCCC-----------------CeEEEEcCCCcHHHHHH-------
Confidence            4579999999942    2344 99999999998754221                 1111111 122344332       


Q ss_pred             hcCCCCCceEEEeecCCC--CCceEEEec------CCCCC---CCC-chHHHHHhcC----------CCCCCCCCCCccc
Q 028433           96 YYKLPLNRVLVFHDDMGL--PCGVLRLRH------NGGHG---GHN-GLKSVMNNFR----------GIGRPPGQMDPKA  153 (209)
Q Consensus        96 ~~ki~~~~ilVvhDDldl--p~G~irlk~------gGs~g---GHN-GLkSIi~~Lg----------GIGrP~~~~~v~~  153 (209)
                         +...+-+||.|=++.  .+|++++=+      ...+.   .|+ ++..+++.+.          |+.-|+.  ...+
T Consensus        53 ---l~~~d~vIIVDav~~g~epG~v~~i~~e~i~~~~~~~~~s~H~~~~~~~L~~~~~~~~~~~~~~~~~v~~~--~~~~  127 (160)
T COG0680          53 ---LAGYDPVIIVDAVLFGLEPGEVRIIDPEEIPAYSSASKDSAHELPLSELLALLKELGGLPVLILGVQVPIV--SLPE  127 (160)
T ss_pred             ---hcCCCcEEEEEeeecCCCCceEEEechhhcccccccCCCccccCCHHHHHHHHHHhcCCceEEEEEeecee--cccc
Confidence               223344778886554  599998643      33444   686 5666666665          2332211  1112


Q ss_pred             cccCcCCHHHHHHHHHHHHHHHHHHHHH
Q 028433          154 FLLQKFNAIARERIDTALQEGVEVLKLL  181 (209)
Q Consensus       154 yVLs~fs~~E~~~l~~~i~~~~~al~~~  181 (209)
                       +-..+|++=++.++.+++.+.+.++.+
T Consensus       128 -~~~~lS~ev~~a~~~av~~i~~~l~~~  154 (160)
T COG0680         128 -FGGGLSPEVEEAVDKAVERILEELREW  154 (160)
T ss_pred             -cccccCHHHHHHHHHHHHHHHHHHHhh
Confidence             225667666666677766666666554

>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit)

Probab=90.12  E-value=8.8  Score=31.02  Aligned_cols=95  Identities=19%  Similarity=0.190  Sum_probs=53.3

Q ss_pred             CeeEEEecCcccCcCCCcchHHHHHHHHHHHHH-cCCCCCccccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHHHh
Q 028433           18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAES-QGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   96 (209)
Q Consensus        18 ~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~-~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~   96 (209)
                      ..+|+|+|||-..    -= -+|..++++|+++ +..+  .               .+.+      ++........+..+
T Consensus         4 ~ilVlGiGN~l~g----DD-GvG~~v~~~L~~~~~~~~--~---------------~v~v------id~gt~~~~~l~~~   55 (153)
T TIGR00130         4 EILVVGCGNILFG----DD-GFGPAVIEYLKENGVEKP--D---------------NVCL------IDAGTGAPHFVFTL   55 (153)
T ss_pred             eEEEEEeCccccc----cC-cHhHHHHHHHHHhCCCCC--C---------------CeEE------EECCCcHHHHHHHH
Confidence            4689999999522    22 3999999999863 2211  0               0111      11111111111112


Q ss_pred             cCCCCCceEEEeec--CCCCCceEEEecC-----C-CCCCCC-chHHHHHhcC
Q 028433           97 YKLPLNRVLVFHDD--MGLPCGVLRLRHN-----G-GHGGHN-GLKSVMNNFR  140 (209)
Q Consensus        97 ~ki~~~~ilVvhDD--ldlp~G~irlk~g-----G-s~gGHN-GLkSIi~~Lg  140 (209)
                      ..+...+.+||-|=  .+.++|+++.-..     + +...|. |+.++++.+.
T Consensus        56 ~~~~~~d~vIivDA~~~~~~PG~v~~~~~~~~~~~~~~s~H~~~l~~~l~~l~  108 (153)
T TIGR00130        56 IPQSKWKKIIVVDIADFGAEPGTLRVLNVDELPNGRYMDAHGWSLAYPLHDLE  108 (153)
T ss_pred             hhhcCCCEEEEEEccCCCcCCCEEEEEchHHcCCCCCCCCccCCHHHHHHHhc
Confidence            12334567777785  5789999987431     2 224566 8999887765

FrhD is not part of the active FRH heterotrimer, but is probably a protease required for maturation. Alternative name: 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) subunit delta.

>PRK12362 germination protease; Provisional

Probab=86.76  E-value=5.6  Score=36.75  Aligned_cols=126  Identities=19%  Similarity=0.242  Sum_probs=73.7

Q ss_pred             HHHHHhhhcCCCCCeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECC-eeEEEEeC----
Q 028433            5 RFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGD-APVLLAKP----   79 (209)
Q Consensus         5 ~~~~~~~~~~~~~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~-~~v~L~KP----   79 (209)
                      +.++..+.-......|||||||.    .-|--. .|-.+++.|.-....       ..++++..-.+ ..|.-.-|    
T Consensus        87 ~~L~~ll~~~~~~~iLVvGLGN~----~vTpDa-LGP~Vv~~l~vTrhl-------~~~~~~~~~~~~~pV~AiaPGVmg  154 (318)
T PRK12362         87 KELKKLINLDKEMTVLVVGLGNW----NVTPDA-LGPKVVSKLMVTRHL-------KEYAPEEIDEGIRPVCAIAPGVLG  154 (318)
T ss_pred             HHHHHHhCCCCCCcEEEEEcCCC----CcCccc-cchhhhhhhhhhhhh-------hhhcCchhcCCCCcceEecCCccc
Confidence            33444442234456899999997    458999 999999988643111       01111110011 23444444    


Q ss_pred             CchhhhchhhHHHHHHhcCCCCCceEEEeecCC----CCCc-eEEEecCC---CCCCCCchHHHH-HhcC----CCCCCC
Q 028433           80 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMG----LPCG-VLRLRHNG---GHGGHNGLKSVM-NNFR----GIGRPP  146 (209)
Q Consensus        80 ~TyMNlSG~aV~~~~~~~ki~~~~ilVvhDDld----lp~G-~irlk~gG---s~gGHNGLkSIi-~~Lg----GIGrP~  146 (209)
                      +|=||.+ +.++.+.+.++   .+++|.-|-+-    --+| +|.+...|   |+|=.|==+.|. +.||    .||=|.
T Consensus       155 ~TGiet~-Eii~gIv~k~k---pd~IIAIDALaar~~~Rl~~tIQisdtGI~PGSGVGN~R~~l~~etLGVPVIAIGVPT  230 (318)
T PRK12362        155 ITGIETA-EIIKGVVEKIK---PDLVIAIDALAARSVERVNTTIQISDTGISPGSGVGNKRMGINEETLGVPVIAIGVPT  230 (318)
T ss_pred             ccchhHH-HHHHHHHHhcC---CCEEEEEeccccCCHHHccCeEEECCCCCCCCccCCCcccccCHHHcCCCEEEEcCCe
Confidence            5777754 56777877765   46788888875    2367 78887766   343334323333 5677    777774

>TIGR00142 hycI hydrogenase maturation protease HycI

Probab=86.09  E-value=16  Score=29.23  Aligned_cols=91  Identities=15%  Similarity=0.170  Sum_probs=51.1

Q ss_pred             eEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHHHhcCC
Q 028433           20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL   99 (209)
Q Consensus        20 LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~ki   99 (209)
                      +|+|+|||-..=    = -+|..++++|.+.+...                  .+.++.-.|    .|.-.-.+.+.++ 
T Consensus         2 lVlGiGN~l~~D----D-G~G~~v~~~L~~~~~~~------------------~v~v~d~gt----~~~~~~~~~~~~~-   53 (146)
T TIGR00142         2 VLLCVGNELMGD----D-GAGPYLAEKCAAAPKEE------------------NWVVINAGT----VPENFTVAIRELR-   53 (146)
T ss_pred             EEEEeCcccccc----C-cHHHHHHHHHHhccCCC------------------CEEEEECCC----ChHHHHHHHHhcC-
Confidence            799999995322    2 49999999998653210                  011111112    1221112222222 


Q ss_pred             CCCceEEEeecC--CCCCceEEEecCC-----CCCCCC-chHHHHHhcC
Q 028433          100 PLNRVLVFHDDM--GLPCGVLRLRHNG-----GHGGHN-GLKSVMNNFR  140 (209)
Q Consensus       100 ~~~~ilVvhDDl--dlp~G~irlk~gG-----s~gGHN-GLkSIi~~Lg  140 (209)
                        .+.+||.|-+  +.++|+++.-...     +..-|. |+..+++.+.
T Consensus        54 --~d~viivDA~~~g~~PG~v~~~~~~~~~~~~~s~H~~~l~~ll~~~~  100 (146)
T TIGR00142        54 --PTHILIVDATDMGLNPGEVRIIDDDIIEMYSMSTHNMPLSYLVDYLK  100 (146)
T ss_pred             --CCEEEEEECcccCCCCCeEEEEChhhccccccCcCcCCHHHHHHHHH
Confidence              3566666765  5699998874321     224555 8888877765

Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	209
1rym_A	212	Structure Of The Group Ii Intron Splicing Factor Cr		1e-50
1ryb_A	205	Crystal Structure Of The Chloroplast Group Ii Intro		3e-49
1ryn_A	202	Structure Of The Chloroplast Group Ii Intron Splici		6e-49
2lgj_A	191	Solution Structure Of Mspth Length = 191		4e-26
3kjz_A	191	Crystal Structure Of Native Peptidyl-Trna Hydrolase		6e-25
2jrc_A	204	Solution Structure Of Peptidyl-Trna Hydrolase From		5e-23
2z2i_A	191	Crystal Structure Of Peptidyl-Trna Hydrolase From M		6e-23
3v2i_A	222	Structure Of A Peptidyl-Trna Hydrolase (Pth) From B		8e-15
4fop_A	193	Crystal Structure Of Peptidyl-Trna Hydrolase From A		2e-14
3vjr_A	197	Crystal Structure Of Peptidyl-Trna Hydrolase From E		6e-14
2pth_A	193	Peptidyl-Trna Hydrolase From Escherichia Coli Lengt		6e-14
4dhw_A	194	Crystal Structure Of Peptidyl-Trna Hydrolase From P		8e-14
4fyj_A	199	Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hy		8e-14
3ofv_A	211	Crystal Structure Of Peptidyl-Trna Hydrolase From E		1e-13
3nea_A	207	Crystal Structure Of Peptidyl-Trna Hydrolase From F		1e-09

>pdb|1RYM|A Chain A, Structure Of The Group Ii Intron Splicing Factor Crs2 Length = 212

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 96/197 (48%), Positives = 129/197 (65%), Gaps = 11/197 (5%)
Query: 18  PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
           PWL  GLGNPG+KY GTRHN VGFEM+D  A  +GI+MNT   K+  G G +G+ PVL+ 
Sbjct: 17  PWLIAGLGNPGNKYYGTRHN-VGFEMVDRIAAEEGITMNTEQSKSLLGIGSIGEVPVLVV 75
Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMN 137
           KPQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GV               ++V+ 
Sbjct: 76  KPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIE 135
Query: 138 NFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 187
           +            GIG PPG+MDP+AFLLQKF++  R +IDTAL++GV+ ++ L+ KG +
Sbjct: 136 HLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFS 195
Query: 188 ESARHFNTIQKYKHIRL 204
            S   FN +QKYK  R+
Sbjct: 196 GSTERFNLVQKYKFHRV 212

>pdb|1RYB|A Chain A, Crystal Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 Length = 205

Iteration: 1
 Score =  191 bits (484), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 92/190 (48%), Positives = 125/190 (65%), Gaps = 11/190 (5%)
Query: 18  PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
           PWL  GLGNPG+KY GTRHN VGFEM+D  A  +GI+MNT+  K+  G G +G+ PVL+ 
Sbjct: 17  PWLIAGLGNPGNKYYGTRHN-VGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVV 75
Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMN 137
           KPQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GV               ++V+ 
Sbjct: 76  KPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIE 135
Query: 138 NFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 187
           +            GIG PPG+MDP+AFLLQKF++  R +IDTAL++GV+ ++ L+ KG +
Sbjct: 136 HLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFS 195
Query: 188 ESARHFNTIQ 197
            S   FN +Q
Sbjct: 196 GSTERFNLVQ 205

>pdb|1RYN|A Chain A, Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 Length = 202

Iteration: 1
 Score =  190 bits (482), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 93/191 (48%), Positives = 125/191 (65%), Gaps = 11/191 (5%)
Query: 18  PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
           PWL  GLGNPG+KY GTRHN VGFEM+D  A  +GI+MNT   K+  G G +G+ PVL+ 
Sbjct: 5   PWLIAGLGNPGNKYYGTRHN-VGFEMVDRIAAEEGITMNTNQFKSLLGTGSIGEVPVLVV 63
Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMN 137
           KPQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GV               ++V+ 
Sbjct: 64  KPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIE 123
Query: 138 NFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 187
           +            GIG PPG+MDP+AFLLQKF++  R +IDTAL++GV+ ++ L+ KG +
Sbjct: 124 HLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFS 183
Query: 188 ESARHFNTIQK 198
            S   FN +QK
Sbjct: 184 GSTERFNLVQK 194

>pdb|2LGJ|A Chain A, Solution Structure Of Mspth Length = 191

Iteration: 1
 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/196 (37%), Positives = 105/196 (53%), Gaps = 16/196 (8%)
Query: 15  VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDA 72
           +A P L VGLGNPG  Y  TRHN +GF + D  A   G S   VH K  A    G +   
Sbjct: 1   MAEPLLVVGLGNPGPTYAKTRHN-LGFMVADVLAGRIG-SAFKVHKKSGAEVVTGRLAGT 58
Query: 73  PVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXX 132
            V+LAKP+ YMN SG   GPLA +Y +P  +++V HD++ +  G                
Sbjct: 59  SVVLAKPRCYMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGL 118
Query: 133 KSVMN-----NFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLS 183
           +SV +     NF     G+GRPPG+ DP AF+L+ F A  R  + T +++  +  +LL++
Sbjct: 119 RSVASALGTKNFHRVRIGVGRPPGRKDPAAFVLENFTAAERAEVPTIVEQAADATELLIA 178
Query: 184 KGLTESARHFNTIQKY 199
           +GL E A+  NT+  +
Sbjct: 179 QGL-EPAQ--NTVHAW 191

>pdb|3KJZ|A Chain A, Crystal Structure Of Native Peptidyl-Trna Hydrolase From Mycobacterium Smegmatis Length = 191

Iteration: 1
 Score =  110 bits (275), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/196 (36%), Positives = 104/196 (53%), Gaps = 16/196 (8%)
Query: 15  VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDA 72
           +A P L VGLGNPG  Y  TRHN +GF + D  A   G S   VH K  A    G +   
Sbjct: 1   MAEPLLVVGLGNPGPTYAKTRHN-LGFMVADVLAGRIG-SAFKVHKKSGAEVVTGRLAGT 58
Query: 73  PVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXX 132
            V+LAKP+  MN SG   GPLA +Y +P  +++V HD++ +  G                
Sbjct: 59  TVVLAKPRISMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGL 118
Query: 133 KSVMN-----NFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLS 183
           +SV +     NF     G+GRPPG+ DP AF+L+ F +  R  + T +++  +  +LL++
Sbjct: 119 RSVASALGTKNFHRVRIGVGRPPGRKDPAAFVLENFTSAERAEVPTIVEQAADATELLIA 178
Query: 184 KGLTESARHFNTIQKY 199
           +GL E A+  NT+  +
Sbjct: 179 QGL-EPAQ--NTVHAW 191

>pdb|2JRC|A Chain A, Solution Structure Of Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis H37rv Length = 204

Iteration: 1
 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 89/182 (48%), Gaps = 11/182 (6%)
Query: 15  VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAP 73
           +A P L VGLGNPG  Y  TRHN +GF + D  A   G          A    G      
Sbjct: 1   MAEPLLVVGLGNPGANYARTRHN-LGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRS 59
Query: 74  VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXK 133
           ++LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G                +
Sbjct: 60  LVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLR 119
Query: 134 SVM-----NNFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSK 184
           SV+      +F+    GIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ +
Sbjct: 120 SVVAALGTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQ 179
Query: 185 GL 186
           G+
Sbjct: 180 GM 181

>pdb|2Z2I|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis Length = 191

Iteration: 1
 Score =  103 bits (258), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 89/182 (48%), Gaps = 11/182 (6%)
Query: 15  VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAP 73
           +A P L VGLGNPG  Y  TRHN +GF + D  A   G          A    G      
Sbjct: 1   MAEPLLVVGLGNPGANYARTRHN-LGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRS 59
Query: 74  VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXK 133
           ++LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G                +
Sbjct: 60  LVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLR 119
Query: 134 SVM-----NNFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSK 184
           SV+      +F+    GIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ +
Sbjct: 120 SVVAALGTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQ 179
Query: 185 GL 186
           G+
Sbjct: 180 GM 181

>pdb|3V2I|A Chain A, Structure Of A Peptidyl-Trna Hydrolase (Pth) From Burkholderia Thailandensis Length = 222

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 87/191 (45%), Gaps = 22/191 (11%)
Query: 20  LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAK 78
           L VGLGNPG +Y  TRHN  GF ++D  A   G ++ +       + +  +    V L +
Sbjct: 25  LIVGLGNPGAEYTATRHN-AGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLE 83
Query: 79  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 138
           PQTYMN SG+S   LA ++K+  N +LV HD++ LP G                K +  +
Sbjct: 84  PQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAH 143
Query: 139 FR---------GIGRPPGQM----------DPKAFLLQKFNAIARERIDTALQEGVEVLK 179
                      GIG P   +          D   F+L+      ++ ID A++  + V+ 
Sbjct: 144 LSSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVLKPPRKEEQDVIDAAIERALAVMP 203
Query: 180 LLLSKGLTESA 190
            ++ KG TE A
Sbjct: 204 AVV-KGETERA 213

>pdb|4FOP|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii At 1.86 A Resolution Length = 193

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 13/190 (6%)
Query: 20  LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAK 78
           L VGLGNPG +Y  TRHN  GF  ++  A+  GI++ N        G+G +    V L  
Sbjct: 6   LIVGLGNPGSEYAQTRHN-AGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLL 64
Query: 79  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVM-- 136
           P TYMN SG+S  P + +Y++    +L+ HD++ +  GV               + ++  
Sbjct: 65  PMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPH 124
Query: 137 --NNFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 190
              NF     GIG P  +      +L K  +  +  +D A+   +  +KLL+   + ++ 
Sbjct: 125 IGPNFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQA- 183
Query: 191 RHFNTIQKYK 200
              N I  YK
Sbjct: 184 --MNQINAYK 191

>pdb|3VJR|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Escherichia Coli In Complex With The Cca-Acceptor-T[psi]c Domain Of Trna Length = 197

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 88/192 (45%), Gaps = 18/192 (9%)
Query: 20  LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVL 75
           L VGL NPG +Y  TRHN  G   +D  AE     +     +A F     +  +G   V 
Sbjct: 8   LIVGLANPGAEYAATRHN-AGAWFVDLLAERLRAPLRE---EAKFFGYTSRVTLGGEDVR 63
Query: 76  LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV 135
           L  P T+MNLSG++   +A+++++  + +LV HD++ LP GV               K +
Sbjct: 64  LLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDI 123
Query: 136 MN------NFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 185
           ++      NF     GIG P  +     F+L K     ++ ID A+ E     ++  + G
Sbjct: 124 ISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDG 183
Query: 186 LTESARHFNTIQ 197
           LT++    +  +
Sbjct: 184 LTKATNRLHAFK 195

>pdb|2PTH|A Chain A, Peptidyl-Trna Hydrolase From Escherichia Coli Length = 193

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 88/192 (45%), Gaps = 18/192 (9%)
Query: 20  LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVL 75
           L VGL NPG +Y  TRHN  G   +D  AE     +     +A F     +  +G   V 
Sbjct: 4   LIVGLANPGAEYAATRHN-AGAWFVDLLAERLRAPLRE---EAKFFGYTSRVTLGGEDVR 59
Query: 76  LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV 135
           L  P T+MNLSG++   +A+++++  + +LV HD++ LP GV               K +
Sbjct: 60  LLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDI 119
Query: 136 MN------NFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 185
           ++      NF     GIG P  +     F+L K     ++ ID A+ E     ++  + G
Sbjct: 120 ISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDG 179
Query: 186 LTESARHFNTIQ 197
           LT++    +  +
Sbjct: 180 LTKATNRLHAFK 191

>pdb|4DHW|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 20/191 (10%)
Query: 20  LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGD-----APV 74
           L VGLGNPG +Y  TRHN  G   ++  A +QG+S+  V  +  FG   VG        V
Sbjct: 6   LIVGLGNPGPEYDQTRHN-AGALFVERLAHAQGVSL--VADRKYFG--LVGKFSHQGKDV 60
Query: 75  LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKS 134
            L  P TYMN SG+S   LA ++++  + +LV HD++ +P GV               + 
Sbjct: 61  RLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRD 120
Query: 135 VM------NNFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSK 184
           ++      N+F     GIG P        ++L +     +E +DT++   + VL  +L+ 
Sbjct: 121 IIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAG 180
Query: 185 GLTESARHFNT 195
             T + +  ++
Sbjct: 181 DWTRAMQKLHS 191

>pdb|4FYJ|A Chain A, Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hydrolase Length = 199

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 20/191 (10%)
Query: 20  LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGD-----APV 74
           L VGLGNPG +Y  TRHN  G   ++  A +QG+S+  V  +  FG   VG        V
Sbjct: 12  LIVGLGNPGPEYDQTRHN-AGALFVERLAHAQGVSL--VADRKYFG--LVGKFSHQGKDV 66
Query: 75  LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKS 134
            L  P TYMN SG+S   LA ++++  + +LV HD++ +P GV               + 
Sbjct: 67  RLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRD 126
Query: 135 VM------NNFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSK 184
           ++      N+F     GIG P        ++L +     +E +DT++   + VL  +L+ 
Sbjct: 127 IIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAG 186
Query: 185 GLTESARHFNT 195
             T + +  ++
Sbjct: 187 DWTRAMQKLHS 197

>pdb|3OFV|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Escherichia Coli, I222 Crystal Form Length = 211

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 18/190 (9%)
Query: 20  LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVL 75
           L VGL NPG +Y  TRHN  G   +D  AE     +     +A F     +  +G   V 
Sbjct: 25  LIVGLANPGAEYAATRHN-AGAWFVDLLAERLRAPLRE---EAKFFGYTSRVTLGGEDVR 80
Query: 76  LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV 135
           L  P T+MNLSG++   +A+++++  + +LV HD++ LP GV               K +
Sbjct: 81  LLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDI 140
Query: 136 MN------NFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 185
           ++      NF     GIG P  +     F+L K     ++ ID A+ E     ++  + G
Sbjct: 141 ISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDG 200
Query: 186 LTESARHFNT 195
           LT++    + 
Sbjct: 201 LTKATNRLHA 210

>pdb|3NEA|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Francisella Tularensis Length = 207

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 15/179 (8%)
Query: 20  LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNT---VHCKATFGQGFVGDAPVLL 76
           + +GLGN G +Y+ TRHN VG   I   A+    S ++   ++C     +  +    V+L
Sbjct: 25  MIIGLGNIGKEYQDTRHN-VGEWFIAKIAQDNNQSFSSNPKLNC--NLAKVSIDYNNVVL 81
Query: 77  AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV- 135
             P TYMN SG +   +A +YK+    +LV HD++ +  G                +S+ 
Sbjct: 82  VFPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSIN 141
Query: 136 ----MNNFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 186
                N++     GIG P  +     ++L   +   ++ ID+A+  G+  L  +++  L
Sbjct: 142 QHLGTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGICFLDDIINYKL 200

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	209
1ryb_A	205	CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP	8e-85
2z2i_A	191	PTH, peptidyl-tRNA hydrolase; protein synthesis; 1	9e-80
4fno_A	194	PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas a	3e-77
2pth_A	193	Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli}	5e-74
4fop_A	193	PTH, peptidyl-tRNA hydrolase; 1.86A {Acinetobacter	5e-73
3nea_A	207	PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella t	1e-71
3v2i_A	222	PTH, peptidyl-tRNA hydrolase; ssgcid, seattle stru	5e-70

>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A Length = 205

 Score =  248 bits (636), Expect = 8e-85
 Identities = 103/190 (54%), Positives = 137/190 (72%), Gaps = 11/190 (5%)

Query: 18  PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
           PWL  GLGNPG+KY GTRHN VGFEM+D  A  +GI+MNT+  K+  G G +G+ PVL+ 
Sbjct: 17  PWLIAGLGNPGNKYYGTRHN-VGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVV 75

Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
           KPQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GVLRL+  GGHG HNGL++V+ 
Sbjct: 76  KPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIE 135

Query: 138 NFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 187
           +            GIG PPG+MDP+AFLLQKF++  R +IDTAL++GV+ ++ L+ KG +
Sbjct: 136 HLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFS 195

Query: 188 ESARHFNTIQ 197
            S   FN +Q
Sbjct: 196 GSTERFNLVQ 205

>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A Length = 191

 Score =  235 bits (602), Expect = 9e-80
 Identities = 73/189 (38%), Positives = 102/189 (53%), Gaps = 11/189 (5%)

Query: 16  ARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPV 74
           A P L VGLGNPG  Y  TRHN +GF + D  A   G          A    G      +
Sbjct: 2   AEPLLVVGLGNPGANYARTRHN-LGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSL 60

Query: 75  LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKS 134
           +LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G +RL+  GG GGHNGL+S
Sbjct: 61  VLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRS 120

Query: 135 VM-----NNFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 185
           V+      +F+    GIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ +G
Sbjct: 121 VVAALGTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQG 180

Query: 186 LTESARHFN 194
           +  +    +
Sbjct: 181 MEPAQNRVH 189

>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A Length = 194

 Score =  229 bits (586), Expect = 3e-77
 Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 12/191 (6%)

Query: 16  ARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPV 74
               L VGLGNPG +Y  TRHN  G   ++  A +QG+S+          G+       V
Sbjct: 2   TAVQLIVGLGNPGPEYDQTRHN-AGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDV 60

Query: 75  LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKS 134
            L  P TYMN SG+S   LA ++++  + +LV HD++ +P GV +L+  GGHGGHNGL+ 
Sbjct: 61  RLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRD 120

Query: 135 VM------NNFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSK 184
           ++      N+F     GIG P        ++L +     +E +DT++   + VL  +L+ 
Sbjct: 121 IIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAG 180

Query: 185 GLTESARHFNT 195
             T + +  ++
Sbjct: 181 DWTRAMQKLHS 191

>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A Length = 193

 Score =  220 bits (564), Expect = 5e-74
 Identities = 61/191 (31%), Positives = 95/191 (49%), Gaps = 12/191 (6%)

Query: 19  WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLA 77
            L VGL NPG +Y  TRHN  G   +D  AE     +           +  +G   V L 
Sbjct: 3   KLIVGLANPGAEYAATRHN-AGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLL 61

Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVM- 136
            P T+MNLSG++   +A+++++  + +LV HD++ LP GV + +  GGHGGHNGLK ++ 
Sbjct: 62  VPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIIS 121

Query: 137 -----NNFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 187
                 NF     GIG P  +     F+L K     ++ ID A+ E     ++  + GLT
Sbjct: 122 KLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLT 181

Query: 188 ESARHFNTIQK 198
           ++    +  + 
Sbjct: 182 KATNRLHAFKA 192

>4fop_A PTH, peptidyl-tRNA hydrolase; 1.86A {Acinetobacter baumannii} Length = 193

 Score =  218 bits (558), Expect = 5e-73
 Identities = 62/189 (32%), Positives = 98/189 (51%), Gaps = 10/189 (5%)

Query: 19  WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLA 77
            L VGLGNPG +Y  TRHN  GF  ++  A+  GI++          G+G +    V L 
Sbjct: 5   SLIVGLGNPGSEYAQTRHN-AGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLL 63

Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVM- 136
            P TYMN SG+S  P + +Y++    +L+ HD++ +  GV+RL+  GGHGGHNGL+ ++ 
Sbjct: 64  LPMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVP 123

Query: 137 ---NNFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 189
               NF     GIG P  +      +L K  +  +  +D A+   +  +KLL+   + ++
Sbjct: 124 HIGPNFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQA 183

Query: 190 ARHFNTIQK 198
               N  + 
Sbjct: 184 MNQINAYKP 192

>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp} Length = 207

 Score =  215 bits (550), Expect = 1e-71
 Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 11/183 (6%)

Query: 16  ARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPV 74
            +  + +GLGN G +Y+ TRHN VG   I   A+    S ++         +  +    V
Sbjct: 21  PKIKMIIGLGNIGKEYQDTRHN-VGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNV 79

Query: 75  LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKS 134
           +L  P TYMN SG +   +A +YK+    +LV HD++ +  G +RL+  GGHGGHNGL+S
Sbjct: 80  VLVFPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRS 139

Query: 135 VM-----NNFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 185
           +      N++     GIG P  +     ++L   +   ++ ID+A+  G+  L  +++  
Sbjct: 140 INQHLGTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGICFLDDIINYK 199

Query: 186 LTE 188
           L  
Sbjct: 200 LEP 202

>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264} Length = 222

 Score =  211 bits (540), Expect = 5e-70
 Identities = 61/197 (30%), Positives = 95/197 (48%), Gaps = 21/197 (10%)

Query: 19  WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLA 77
            L VGLGNPG +Y  TRHN  GF ++D  A   G ++         + +  +    V L 
Sbjct: 24  KLIVGLGNPGAEYTATRHN-AGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLL 82

Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVM- 136
           +PQTYMN SG+S   LA ++K+  N +LV HD++ LP G ++L+  GG GGHNGLK +  
Sbjct: 83  EPQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISA 142

Query: 137 ----NNFR----GIGRPP----------GQMDPKAFLLQKFNAIARERIDTALQEGVEVL 178
                 +     GIG P            + D   F+L+      ++ ID A++  + V+
Sbjct: 143 HLSSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVLKPPRKEEQDVIDAAIERALAVM 202

Query: 179 KLLLSKGLTESARHFNT 195
             ++      +    + 
Sbjct: 203 PAVVKGETERAMMQLHR 219

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
4hoy_A	193	PTH, peptidyl-tRNA hydrolase; enzyme, molecular co	100.0
2pth_A	193	Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli}	100.0
2z2i_A	191	PTH, peptidyl-tRNA hydrolase; protein synthesis; 1	100.0
1ryb_A	205	CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP	100.0
4fyj_A	199	PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas a	100.0
3v2i_A	222	PTH, peptidyl-tRNA hydrolase; ssgcid, seattle stru	100.0
3nea_A	207	PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella t	100.0
4fno_A	194	PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas a	100.0

>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A

Probab=100.00  E-value=1.3e-74  Score=488.62  Aligned_cols=182  Identities=33%  Similarity=0.625  Sum_probs=175.3

Q ss_pred             CCCeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHH
Q 028433           16 ARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLA   94 (209)
Q Consensus        16 ~~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~   94 (209)
                      +.++|||||||||++|++|||| |||+++|+||+++++++++ +++.++++++.+.+++++|+||+||||+||+||++++
T Consensus         2 s~ikLIVGLGNPG~~Y~~TRHN-iGf~~ld~La~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~aV~~~~   80 (193)
T 4hoy_A            2 SNISLIVGLGNPGSEYAQTRHN-AGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFS   80 (193)
T ss_dssp             CCCCEEEECCCCSTTTTTBGGG-HHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHH
T ss_pred             CCceEEEEcCCCchhhCcCccc-HHHHHHHHHHHHcCCCccccccccEEEEEEEECCEEEEEEeCCCccccchhhHHHHH
Confidence            4578999999999999999999 9999999999999999855 5788999999999999999999999999999999999


Q ss_pred             HhcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhcC--------CCCCCCCCCCccccccCcCCHHHHHH
Q 028433           95 AYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR--------GIGRPPGQMDPKAFLLQKFNAIARER  166 (209)
Q Consensus        95 ~~~ki~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~Lg--------GIGrP~~~~~v~~yVLs~fs~~E~~~  166 (209)
                      +||++++++|||||||||||+|++|+|++||+|||||||||+++||        |||||+++.++++|||++|+++|++.
T Consensus        81 ~~~ki~~~~ilVihDdldL~~G~irlk~~G~~gGHNGlkSI~~~lgtdf~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~  160 (193)
T 4hoy_A           81 KFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHIGPNFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSL  160 (193)
T ss_dssp             HHTTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHTTHHHHCSCSEEEEEECCCCSSGGGHHHHHTSBCCHHHHHH
T ss_pred             HHcCCCchheEEeeeccccccCceeeccCCCCCCcCCccchhhHhccccceEEEeeCCCCCCCCcccccCCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999        99999988899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHhhhchhh
Q 028433          167 IDTALQEGVEVLKLLLSKGLTESARHFNTIQK  198 (209)
Q Consensus       167 l~~~i~~~~~al~~~l~~~~~~amn~~N~~~~  198 (209)
                      ++++++.|+++++.|+++++++|||+||++++
T Consensus       161 l~~~i~~a~~~i~~~~~~~~~~amn~~n~~kp  192 (193)
T 4hoy_A          161 MDGAIDHALSKVKLLVQGQVPQAMNQINAYKP  192 (193)
T ss_dssp             HHHHHHHHHHTHHHHHTTCHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHhCCCC
Confidence            99999999999999999999999999999765

>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A

Probab=100.00  E-value=2.6e-74  Score=486.70  Aligned_cols=178  Identities=33%  Similarity=0.605  Sum_probs=171.2

Q ss_pred             CeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHHHh
Q 028433           18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   96 (209)
Q Consensus        18 ~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~-~~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~   96 (209)
                      |+|||||||||++|++|||| ||||++|+||++++++++ +.++++.++++.+.+++|+|+||+||||+||+||+++++|
T Consensus         2 m~LIvGLGNPG~~Y~~TRHN-iGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~sV~~~~~~   80 (193)
T 2pth_A            2 IKLIVGLANPGAEYAATRHN-AGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASF   80 (193)
T ss_dssp             CCEEEECCCCSTTTTTSGGG-HHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHH
T ss_pred             cEEEEEECCCCcccccCchH-HHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchHhcCcHHHHHHHHH
Confidence            68999999999999999999 999999999999999986 5678999999999999999999999999999999999999


Q ss_pred             cCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhcC----------CCCCCCCCCCccccccCcCCHHHHHH
Q 028433           97 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR----------GIGRPPGQMDPKAFLLQKFNAIARER  166 (209)
Q Consensus        97 ~ki~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~Lg----------GIGrP~~~~~v~~yVLs~fs~~E~~~  166 (209)
                      |||++++|||||||||||+|++|+|.+||+|||||||||+++||          |||||+.+.++++|||++|+++|++.
T Consensus        81 yki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~Lg~t~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~  160 (193)
T 2pth_A           81 FRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKL  160 (193)
T ss_dssp             HTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHH
T ss_pred             hCCCHHHEEEEecccCCCCceEEEecCCCCCCCCCHHHHHHHhCCCCCeEEEEEEeCCCCCCCchhHHhhCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999998          99999644578999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHhhhch
Q 028433          167 IDTALQEGVEVLKLLLSKGLTESARHFNTI  196 (209)
Q Consensus       167 l~~~i~~~~~al~~~l~~~~~~amn~~N~~  196 (209)
                      |+++++.|+++++.|+++++++|||+||++
T Consensus       161 l~~~i~~a~~a~~~~~~~~~~~amn~~n~~  190 (193)
T 2pth_A          161 IDEAIDEAARCTEMWFTDGLTKATNRLHAF  190 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHhCc
Confidence            999999999999999999999999999985

>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A

Probab=100.00  E-value=1.4e-74  Score=487.63  Aligned_cols=179  Identities=40%  Similarity=0.766  Sum_probs=161.1

Q ss_pred             CCCeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHH
Q 028433           16 ARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLA   94 (209)
Q Consensus        16 ~~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~   94 (209)
                      ..|+|||||||||++|++|||| ||||++|+||+++++++++ +++++.++++.+.+++|+|+||+||||+||+||++++
T Consensus         2 ~~m~LIvGLGNPG~~Y~~TRHN-iGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~aV~~~~   80 (191)
T 2z2i_A            2 AEPLLVVGLGNPGANYARTRHN-LGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLA   80 (191)
T ss_dssp             CSCEEEEECCCCSHHHHTBGGG-HHHHHHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHH
T ss_pred             CccEEEEEECCCCchhccCchH-HHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchhhcccHHHHHHH
Confidence            3579999999999999999999 9999999999999998865 4688999999999999999999999999999999999


Q ss_pred             HhcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhcC---------CCCCCCCCCCccccccCcCCHHHHH
Q 028433           95 AYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR---------GIGRPPGQMDPKAFLLQKFNAIARE  165 (209)
Q Consensus        95 ~~~ki~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~Lg---------GIGrP~~~~~v~~yVLs~fs~~E~~  165 (209)
                      +||||++++|||||||||||+|++|+|.+||+|||||||||+++||         |||||+++.++++|||++|+++|++
T Consensus        81 ~~yki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~Lgt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~  160 (191)
T 2z2i_A           81 KFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAALGTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERA  160 (191)
T ss_dssp             HHTTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHHTCSCSEEEEEECCCCCTTSCHHHHHTSBCCHHHHT
T ss_pred             HHhCCCHHHEEEEecccCCCCceEEEecCCCCCCcCCHHHHHHHhCCCCeEEEEEeeCCCCCCCchhhHhcCCCCHHHHH
Confidence            9999999999999999999999999999999999999999999999         9999965567999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHhhhc
Q 028433          166 RIDTALQEGVEVLKLLLSKGLTESARHFNT  195 (209)
Q Consensus       166 ~l~~~i~~~~~al~~~l~~~~~~amn~~N~  195 (209)
                      .|+++++.|+++++.|+++++++|||+||+
T Consensus       161 ~l~~~i~~a~~a~~~~~~~~~~~amn~~n~  190 (191)
T 2z2i_A          161 EVPTICEQAADATELLIEQGMEPAQNRVHA  190 (191)
T ss_dssp             THHHHHHHHHHHHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHhC
Confidence            999999999999999999999999999995

>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A

Probab=100.00  E-value=3.5e-74  Score=489.64  Aligned_cols=181  Identities=56%  Similarity=1.049  Sum_probs=168.8

Q ss_pred             CCCCeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHH
Q 028433           15 VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLA   94 (209)
Q Consensus        15 ~~~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~   94 (209)
                      ...++|||||||||++|++|||| ||||++|+||+++++++++.+++++++++.+.+++|+|+||+||||+||+||++++
T Consensus        14 ~~~~~LIVGLGNPG~~Y~~TRHN-iGf~viD~La~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~sV~~~~   92 (205)
T 1ryb_A           14 EYTPWLIAGLGNPGNKYYGTRHN-VGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLA   92 (205)
T ss_dssp             -CCCEEEEECCCCSGGGTTBGGG-HHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHH
T ss_pred             CCCCEEEEEECCCChhhccCchH-HHHHHHHHHHHHcCCCcccccccEEEEEEEECCEEEEEEcCCchhhccCHHHHHHH
Confidence            45689999999999999999999 99999999999999998877899999999999999999999999999999999999


Q ss_pred             HhcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhc-C---------CCCCCCCCCCccccccCcCCHHHH
Q 028433           95 AYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF-R---------GIGRPPGQMDPKAFLLQKFNAIAR  164 (209)
Q Consensus        95 ~~~ki~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~L-g---------GIGrP~~~~~v~~yVLs~fs~~E~  164 (209)
                      +||||++++|||||||||||+|++|+|.+||+|||||||||+++| |         |||||+.+.++++|||++|+++|+
T Consensus        93 ~~yki~~~~ilVihDdLdLp~G~iRlk~gGs~gGHNGLkSI~~~L~gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~  172 (205)
T 1ryb_A           93 AYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEER  172 (205)
T ss_dssp             HHTTCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHH
T ss_pred             HHhCCCHHHEEEEeecccCCCCeEEEeeCCCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCchhhhhcCCCCHHHH
Confidence            999999999999999999999999999999999999999999999 8         999997656799999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHhhhch
Q 028433          165 ERIDTALQEGVEVLKLLLSKGLTESARHFNTI  196 (209)
Q Consensus       165 ~~l~~~i~~~~~al~~~l~~~~~~amn~~N~~  196 (209)
                      +.|+++++.|++|++.|+++++++|||+||++
T Consensus       173 ~~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~  204 (205)
T 1ryb_A          173 VQIDTALEQGVDAVRTLVLKGFSGSTERFNLV  204 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-----CCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            99999999999999999999999999999974

>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A

Probab=100.00  E-value=1.5e-73  Score=483.94  Aligned_cols=179  Identities=34%  Similarity=0.587  Sum_probs=172.2

Q ss_pred             CCeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHHH
Q 028433           17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA   95 (209)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~   95 (209)
                      ...|||||||||++|+.|||| ||||++|+||++++.++.+ .+|.++++++.+++++++|+||+||||+||+||+++++
T Consensus         9 ~~~lIvGLGNPG~~Y~~TRHN-vGf~vlD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~   87 (199)
T 4fyj_A            9 AVQLIVGLGNPGPEYDQTRHN-AGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAG   87 (199)
T ss_dssp             CCCEEEECCCCSGGGTTCGGG-HHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHH
T ss_pred             eeeEEEEeCCCchhhCcCchH-HHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhCChHHHHHHHH
Confidence            346999999999999999999 9999999999999998764 57889999999999999999999999999999999999


Q ss_pred             hcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhcC----------CCCCCCCCCCccccccCcCCHHHHH
Q 028433           96 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR----------GIGRPPGQMDPKAFLLQKFNAIARE  165 (209)
Q Consensus        96 ~~ki~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~Lg----------GIGrP~~~~~v~~yVLs~fs~~E~~  165 (209)
                      ||+|++++|||||||||||+|++|+|++||+|||||||||+++||          |||||+.+.++++|||++|+++|++
T Consensus        88 ~yki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~Lgt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~  167 (199)
T 4fyj_A           88 FFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQE  167 (199)
T ss_dssp             HTTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHHCSSSCCEEEEEECCCCSSGGGHHHHHTSCCCHHHHH
T ss_pred             HhCCCHHHEEEEEecCCCCCceEEEecCCCCCCCCCHHHHHHHhCCccceEEEEEEeCCCCCCCchhhhhccCCCHHHHH
Confidence            999999999999999999999999999999999999999999999          9999988789999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHhhhch
Q 028433          166 RIDTALQEGVEVLKLLLSKGLTESARHFNTI  196 (209)
Q Consensus       166 ~l~~~i~~~~~al~~~l~~~~~~amn~~N~~  196 (209)
                      .|+++++.|+++++.|+++++++|||+||++
T Consensus       168 ~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~  198 (199)
T 4fyj_A          168 LLDTSIDFALGVLPEMLAGDWTRAMQKLHSQ  198 (199)
T ss_dssp             HHHHHHHHHHHTHHHHHHTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence            9999999999999999999999999999974

>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}

Probab=100.00  E-value=9.1e-73  Score=485.75  Aligned_cols=180  Identities=34%  Similarity=0.595  Sum_probs=167.3

Q ss_pred             CCeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCcc-ccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHHH
Q 028433           17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA   95 (209)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~-k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~   95 (209)
                      +|+|||||||||++|+.|||| ||||++|+||++++.++.+. +|+++++++.+.+++|+|+||+||||+||++|+++++
T Consensus        22 ~~~LIVGLGNPG~~Y~~TRHN-iGf~vvD~La~~~~~~~~~~~kf~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~  100 (222)
T 3v2i_A           22 MIKLIVGLGNPGAEYTATRHN-AGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALAH  100 (222)
T ss_dssp             CCCEEEECCCCSGGGTTSGGG-HHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHH
T ss_pred             eEEEEEEeCCCchhhCcCchH-HHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhcccHHHHHHHH
Confidence            568999999999999999999 99999999999999998654 6889999999999999999999999999999999999


Q ss_pred             hcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhcC---------CCCCC----------CCCCCcccccc
Q 028433           96 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR---------GIGRP----------PGQMDPKAFLL  156 (209)
Q Consensus        96 ~~ki~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~Lg---------GIGrP----------~~~~~v~~yVL  156 (209)
                      ||||++++|||||||||||+|++|+|.+||+|||||||||+++||         |||||          +.+.++++|||
T Consensus       101 ~yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLKSI~~~Lgt~~f~RlRIGIGrP~~~~p~~~~~~~~~~v~~yVL  180 (222)
T 3v2i_A          101 FFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHLSSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVL  180 (222)
T ss_dssp             HHTCCGGGEEEEEEETTSCTTCEEEEECCCCTTCHHHHHHHHHHTCCCSEEEEEECCCTTTTCC---------CHHHHTT
T ss_pred             HhCCCHHHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHhCCCCeEEEEEEcCCCcccccccccCCCCCcHHHHhc
Confidence            999999999999999999999999999999999999999999999         99999          55678999999


Q ss_pred             CcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHhhhchh
Q 028433          157 QKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQ  197 (209)
Q Consensus       157 s~fs~~E~~~l~~~i~~~~~al~~~l~~~~~~amn~~N~~~  197 (209)
                      ++|+++|++.|+++++.|+++++.|+++++++|||+||+..
T Consensus       181 ~~fs~~E~~~l~~~i~~a~~av~~~~~~~~~~amn~~n~~~  221 (222)
T 3v2i_A          181 KPPRKEEQDVIDAAIERALAVMPAVVKGETERAMMQLHRNG  221 (222)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHC----
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999753

>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}

Probab=100.00  E-value=2.5e-73  Score=484.88  Aligned_cols=178  Identities=31%  Similarity=0.570  Sum_probs=170.8

Q ss_pred             CCCCeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCcc-ccceEEEEEEECCeeEEEEeCCchhhhchhhHHHH
Q 028433           15 VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPL   93 (209)
Q Consensus        15 ~~~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~-k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~   93 (209)
                      +..|+|||||||||++|++|||| ||||++|+||++++.++.+. +|+++++++.+.+++|+|+||+||||+||++|+++
T Consensus        20 m~~~~LIVGLGNPG~~Y~~TRHN-vGf~vvD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~   98 (207)
T 3nea_A           20 MPKIKMIIGLGNIGKEYQDTRHN-VGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKV   98 (207)
T ss_dssp             -CCCCEEEECCCCSTTTTTSGGG-HHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEESSCGGGHHHHHHHH
T ss_pred             cCCcEEEEEeCCCchhhCcCchH-HHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEeCCcchhCCcHHHHHH
Confidence            44689999999999999999999 99999999999999998765 78899999999999999999999999999999999


Q ss_pred             HHhcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhcC---------CCCCCCCCCCccccccCcCCHHHH
Q 028433           94 AAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR---------GIGRPPGQMDPKAFLLQKFNAIAR  164 (209)
Q Consensus        94 ~~~~ki~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~Lg---------GIGrP~~~~~v~~yVLs~fs~~E~  164 (209)
                      ++||||++++|||||||||||+|++|+|++||+|||||||||+++||         |||||+.+.++++|||++|+++|+
T Consensus        99 ~~~yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLkSIi~~Lgt~~f~RlRiGIGrP~~~~~v~~yVL~~fs~~E~  178 (207)
T 3nea_A           99 ANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHLGTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQK  178 (207)
T ss_dssp             HHHHTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHHTCCCSEEEEEECCCCSSGGGHHHHHTSCCCHHHH
T ss_pred             HHHhCCCHHHEEEEEEcCCCCCceEEEecCCCCCCCCCHHHHHHHhCCCCeeEEEEEeCCCCCCCchHHHhccCCCHHHH
Confidence            99999999999999999999999999999999999999999999999         999998778899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHhh
Q 028433          165 ERIDTALQEGVEVLKLLLSKGLTESARHF  193 (209)
Q Consensus       165 ~~l~~~i~~~~~al~~~l~~~~~~amn~~  193 (209)
                      +.|+++++.|+++++.|+++++++|||++
T Consensus       179 ~~l~~~i~~a~~a~~~~~~~~~~~amn~~  207 (207)
T 3nea_A          179 KDIDSAIDNGICFLDDIINYKLEPVMQKL  207 (207)
T ss_dssp             HHHHHHHHHHHHTHHHHHTTCCCSCSTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHhcC
Confidence            99999999999999999999999999874

>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A

Probab=100.00  E-value=1.2e-74  Score=488.96  Aligned_cols=180  Identities=33%  Similarity=0.585  Sum_probs=171.0

Q ss_pred             CCeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHHH
Q 028433           17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA   95 (209)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~-~~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~   95 (209)
                      +|+|||||||||++|++|||| ||||++|+||+++++++. +.+++++++++.+.+++|+|+||+||||+||+||+++++
T Consensus         3 mm~LIvGLGNPG~~Y~~TRHN-iGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~   81 (194)
T 4fno_A            3 AVQLIVGLGNPGPEYDQTRHN-AGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAG   81 (194)
Confidence            478999999999999999999 999999999999999876 457889999888889999999999999999999999999


Q ss_pred             hcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhcC----------CCCCCCCCCCccccccCcCCHHHHH
Q 028433           96 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR----------GIGRPPGQMDPKAFLLQKFNAIARE  165 (209)
Q Consensus        96 ~~ki~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~Lg----------GIGrP~~~~~v~~yVLs~fs~~E~~  165 (209)
                      ||||++++|||||||||||+|++|+|.+||+|||||||||+++||          |||||+.+.++++|||++|+++|++
T Consensus        82 fyki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~Lgt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~  161 (194)
T 4fno_A           82 FFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQE  161 (194)
Confidence            999999999999999999999999999999999999999999998          9999965567999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHhhhchh
Q 028433          166 RIDTALQEGVEVLKLLLSKGLTESARHFNTIQ  197 (209)
Q Consensus       166 ~l~~~i~~~~~al~~~l~~~~~~amn~~N~~~  197 (209)
                      .|+++++.|+++++.|+++++++|||+||+.+
T Consensus       162 ~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~k  193 (194)
T 4fno_A          162 LLDTSIDFALGVLPEMLAGDWTRAMQKLHSQK  193 (194)
Confidence            99999999999999999999999999999743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	209
d1ryba_	191	c.56.3.1 (A:) Chloroplast group II intron splicing	2e-50
d2ptha_	193	c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia	2e-42

>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]} Length = 191

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Chloroplast group II intron splicing factor Crs2
species: Maize (Zea mays) [TaxId: 4577]

 Score =  160 bits (405), Expect = 2e-50
 Identities = 103/190 (54%), Positives = 137/190 (72%), Gaps = 11/190 (5%)

Query: 18  PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
           PWL  GLGNPG+KY GTRHN VGFEM+D  A  +GI+MNT+  K+  G G +G+ PVL+ 
Sbjct: 3   PWLIAGLGNPGNKYYGTRHN-VGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVV 61

Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
           KPQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GVLRL+  GGHG HNGL++V+ 
Sbjct: 62  KPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIE 121

Query: 138 NFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 187
           +            GIG PPG+MDP+AFLLQKF++  R +IDTAL++GV+ ++ L+ KG +
Sbjct: 122 HLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFS 181

Query: 188 ESARHFNTIQ 197
            S   FN +Q
Sbjct: 182 GSTERFNLVQ 191

>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]} Length = 193

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Peptidyl-tRNA hydrolase
species: Escherichia coli [TaxId: 562]

 Score =  139 bits (352), Expect = 2e-42
 Identities = 59/186 (31%), Positives = 93/186 (50%), Gaps = 12/186 (6%)

Query: 20  LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAK 78
           L VGL NPG +Y  TRHN  G   +D  AE     +           +  +G   V L  
Sbjct: 4   LIVGLANPGAEYAATRHN-AGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLV 62

Query: 79  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 138
           P T+MNLSG++   +A+++++  + +LV HD++ LP GV + +  GGHGGHNGLK +++ 
Sbjct: 63  PTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISK 122

Query: 139 FR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 188
                       GIG P  +     F+L K     ++ ID A+ E     ++  + GLT+
Sbjct: 123 LGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTK 182

Query: 189 SARHFN 194
           +    +
Sbjct: 183 ATNRLH 188

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	209
d1ryba_	191	Chloroplast group II intron splicing factor Crs2 {	100.0
d2ptha_	193	Peptidyl-tRNA hydrolase {Escherichia coli [TaxId:	100.0
d1cfza_	162	Hydrogenase maturating endopeptidase HybD {Escheri	83.33

>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Chloroplast group II intron splicing factor Crs2
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=7.7e-71  Score=462.78  Aligned_cols=179  Identities=57%  Similarity=1.069  Sum_probs=167.9

Q ss_pred             CCeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHHHh
Q 028433           17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   96 (209)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~   96 (209)
                      .+||||||||||++|++|||| |||+++|.||++++.+++..++.+.++...+++++|+|+||+||||+||++|++++++
T Consensus         2 ~p~LIvGLGNPG~~Y~~TRHN-iG~~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~tyMN~SG~av~~~~~~   80 (191)
T d1ryba_           2 TPWLIAGLGNPGNKYYGTRHN-VGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAY   80 (191)
T ss_dssp             CCEEEEECCCCSGGGTTBGGG-HHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHH
T ss_pred             CceEEEEcCCCCccccCCccH-HHHHHHHHHHHHcCCCcccccccceEEEEeccCceEEEEecCcccccccHHHHHHHHh
Confidence            359999999999999999999 9999999999999999888888899999999999999999999999999999999999


Q ss_pred             cCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhcC----------CCCCCCCCCCccccccCcCCHHHHHH
Q 028433           97 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR----------GIGRPPGQMDPKAFLLQKFNAIARER  166 (209)
Q Consensus        97 ~ki~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~Lg----------GIGrP~~~~~v~~yVLs~fs~~E~~~  166 (209)
                      |++++++|||||||+|||+|++|+|.+||+|||||||||+++||          |||||+++.++++|||++|+++|++.
T Consensus        81 ~~i~~~~ilVihDDldl~~G~irlk~~Gs~gGHNGlkSIi~~L~gt~~f~RlriGIg~p~~~~~~~~~VL~~f~~~E~~~  160 (191)
T d1ryba_          81 YQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQ  160 (191)
T ss_dssp             TTCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHHHH
T ss_pred             hccCcceeEEEEcccccccCceeeccCCCCCcCcchhhHHHHhCCchheEEEeecCCCCcccCCcccccCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999994          99999887899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHhhhch
Q 028433          167 IDTALQEGVEVLKLLLSKGLTESARHFNTI  196 (209)
Q Consensus       167 l~~~i~~~~~al~~~l~~~~~~amn~~N~~  196 (209)
                      ++.+++.++++++.|+++++++|||+||+.
T Consensus       161 l~~~~~~~~~~~~~~i~~~~~~~mn~~N~~  190 (191)
T d1ryba_         161 IDTALEQGVDAVRTLVLKGFSGSTERFNLV  190 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-----CCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHhhCC
Confidence            999999999999999999999999999974

>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Peptidyl-tRNA hydrolase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-70  Score=461.22  Aligned_cols=181  Identities=33%  Similarity=0.596  Sum_probs=173.0

Q ss_pred             CCeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCchhhhchhhHHHHHH
Q 028433           17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA   95 (209)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~   95 (209)
                      .|+|||||||||++|++|||| |||+++|.||++++.+++. +++.+.++...+.+.+++|+||+||||+||++|+++++
T Consensus         1 ~mklivGLGNPG~~Y~~TRHN-iG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~   79 (193)
T d2ptha_           1 TIKLIVGLANPGAEYAATRHN-AGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMAS   79 (193)
T ss_dssp             CCCEEEECCCCSTTTTTSGGG-HHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHH
T ss_pred             CEEEEEECCCCchhhCcCchH-HHHHHHHHHHHHcCCCcccccccceeeeeeeecCceEEEEecceeccccchhHHHHHH
Confidence            378999999999999999999 9999999999999998764 46778888889999999999999999999999999999


Q ss_pred             hcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchHHHHHhcC----------CCCCCCCCCCccccccCcCCHHHHH
Q 028433           96 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR----------GIGRPPGQMDPKAFLLQKFNAIARE  165 (209)
Q Consensus        96 ~~ki~~~~ilVvhDDldlp~G~irlk~gGs~gGHNGLkSIi~~Lg----------GIGrP~~~~~v~~yVLs~fs~~E~~  165 (209)
                      +|++++++|+|||||+|||+|++|+|.+||+|||||||||+++||          |||||+.+.++++|||++|+++|++
T Consensus        80 ~~~i~~~~ilVihDDldl~~G~irlk~~Gs~gGHNGlkSI~~~LG~~~~f~RlriGIG~P~~~~~v~~yVL~~fs~~E~~  159 (193)
T d2ptha_          80 FFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQK  159 (193)
T ss_dssp             HHTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHH
T ss_pred             HhCCCHHHeEEEecchhccCCCcccccCCCccccccHHHHHHHhhcccchheeeeeccCCcccCCccceeCCCCCHHHHH
Confidence            999999999999999999999999999999999999999999998          9999987778999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHhhhchhh
Q 028433          166 RIDTALQEGVEVLKLLLSKGLTESARHFNTIQK  198 (209)
Q Consensus       166 ~l~~~i~~~~~al~~~l~~~~~~amn~~N~~~~  198 (209)
                      .|+++++.++++++.|+++++++|||+||+.++
T Consensus       160 ~l~~~i~~~~~~i~~~i~~g~~~amn~~N~~k~  192 (193)
T d2ptha_         160 LIDEAIDEAARCTEMWFTDGLTKATNRLHAFKA  192 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHhCcCC
Confidence            999999999999999999999999999998764

>d1cfza_ c.56.1.1 (A:) Hydrogenase maturating endopeptidase HybD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: HybD-like
family: Hydrogenase maturating endopeptidase HybD
domain: Hydrogenase maturating endopeptidase HybD
species: Escherichia coli [TaxId: 562]

Probab=83.33  E-value=0.47  Score=35.73  Aligned_cols=31  Identities=23%  Similarity=0.371  Sum_probs=23.5

Q ss_pred             CeeEEEecCcccCcCCCcchHHHHHHHHHHHHHcCC
Q 028433           18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGI   53 (209)
Q Consensus        18 ~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~   53 (209)
                      ..+|+|+|||=.    .-= .+|..++++|++++..
T Consensus         2 rilVlGiGN~l~----gDD-gvG~~v~~~L~~~~~~   32 (162)
T d1cfza_           2 RILVLGVGNILL----TDE-AIGVRIVEALEQRYIL   32 (162)
T ss_dssp             CEEEEEESCTTB----GGG-GHHHHHHHHHHHHEEC
T ss_pred             eEEEEEECCccc----ccC-cHHHHHHHHHHHhcCC
Confidence            358999999932    222 4999999999997653