Citrus Sinensis ID: 028439

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSKSENQL
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccHHHHEEHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEEEHHHHHHHHHHHHHHccccEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLpasllfhrsqippltlpiLSAFFLLgflgtssqffgyagiyyssptLSTALLNLVPGFTFILAIIFRVEkldwrsssslakSVGTIVLITGAFIMTyykgphllmtslppnsslqvfmpqtnwvfGGLLLAVDCVFTSAWFIVQVRFLRnsksenql
Flexible Loop (DISEMBL)
MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRflrnsksenql
Low Complexity Region (SEG)
MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSKSENQL
Disordered region (IsUnstruct)
****GLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFL*********
Disordered Region (DISOPRED)
*****LA*VIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLL*******************VFGGLLLAVDCVFTSAWFIVQVRFLRNSKSENQL
Disordered Region (DISEMBL)
MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSKSENQL
Disordered Region (DISPRO)
*GKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSL************TNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSKSENQ*
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSKSENQL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
Q94JU2	367	WAT1-related protein At3g	yes	no	0.947	0.539	0.445	6e-37
F4KHA8	370	WAT1-related protein At5g	no	no	0.961	0.543	0.427	2e-36
Q9FL08	368	WAT1-related protein At5g	no	no	0.961	0.546	0.427	1e-35
Q945L4	339	WAT1-related protein At5g	no	no	0.832	0.513	0.414	8e-30
Q9LRS5	353	WAT1-related protein At3g	no	no	0.909	0.538	0.408	2e-27
F4JK59	347	WAT1-related protein At4g	no	no	0.918	0.553	0.445	3e-27
F4IYZ0	358	WAT1-related protein At3g	no	no	0.913	0.533	0.406	7e-27
F4I5D5	375	WAT1-related protein At1g	no	no	0.909	0.506	0.377	1e-26
Q8VYZ7	360	WAT1-related protein At3g	no	no	0.909	0.527	0.413	3e-25
Q56X95	355	WAT1-related protein At3g	no	no	0.913	0.538	0.375	4e-25

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score =  153 bits (387), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 89/200 (44%), Positives = 126/200 (63%), Gaps = 2/200 (1%)

Query: 8   PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPL 66
           PV  +++ ECA+VGL    KAA   GMS  VF+ YS   A+L+LLP+     RS+ +PP+
Sbjct: 12  PVTALVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAALLLLPSLFCSFRSRTLPPM 71

Query: 67  TLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWR 126
              IL    LLG +G  S   GY GI YSSPTL++A+ NL P FTF+LA++FR+E + ++
Sbjct: 72  NFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFRMESVSFK 131

Query: 127 SSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDC 186
            +SS+AK +GT+V I GAFI+T Y GP ++  S PP+ SL+      NW+ G   LAV+ 
Sbjct: 132 RTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKS-PPSVSLRSQSTNPNWILGAGFLAVEY 190

Query: 187 VFTSAWFIVQVRFLRNSKSE 206
                W+IVQ + +R   +E
Sbjct: 191 FCVPLWYIVQTQIMREYPAE 210

Arabidopsis thaliana (taxid: 3702)

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score =  152 bits (384), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/208 (42%), Positives = 125/208 (60%), Gaps = 7/208 (3%)

Query: 6   LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IP 64
           + P   M+  EC  VG     KAA   G+S  VFVFY+   A+LVLLP SL+F RS+ +P
Sbjct: 19  VVPFTAMVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRSKRLP 78

Query: 65  PLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLD 124
               P+    FLL  +G  S   G  GI YSSPTL++A+ NL P FTF LA+IFR+E++ 
Sbjct: 79  SAKTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQIV 138

Query: 125 WRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTS--LPPNSSLQVFMPQT----NWVFG 178
            RSS++ AK +GTIV I+GA ++  YKGP +L  +   PP+ ++ ++   T    +W+ G
Sbjct: 139 LRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWIIG 198

Query: 179 GLLLAVDCVFTSAWFIVQVRFLRNSKSE 206
           GLLLA   +  S W+I+Q R +     E
Sbjct: 199 GLLLATQYLLVSVWYILQTRVMELYPEE 226

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score =  149 bits (376), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/208 (42%), Positives = 126/208 (60%), Gaps = 7/208 (3%)

Query: 6   LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IP 64
           + P   M   ECA VG     KAA   G+S  VFVFYS   ++L+LLP S++F RS+ +P
Sbjct: 18  VVPFAAMFAVECATVGSNTLFKAATLRGLSFYVFVFYSYIVSTLLLLPLSVIFGRSRRLP 77

Query: 65  PLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLD 124
               P+    FLLG +G  SQ  G  GI YSSPTL++A+ NL P FTF LA+IFR+E++ 
Sbjct: 78  AAKSPLFFKIFLLGLVGFMSQIAGCKGIAYSSPTLASAISNLTPAFTFTLAVIFRMEQVR 137

Query: 125 WRSSSSLAKSVGTIVLITGAFIMTYYKGPHLL----MTSLPPNSSL--QVFMPQTNWVFG 178
            RSS++ AK +G I+ I+GA ++  YKGP +L     T++ P  +L  Q+   +++W+ G
Sbjct: 138 LRSSATQAKIIGAILSISGALVVVLYKGPQVLASASFTTVLPTVTLHQQLTSIESSWIIG 197

Query: 179 GLLLAVDCVFTSAWFIVQVRFLRNSKSE 206
           GLLLA      S W+I+Q R +     E
Sbjct: 198 GLLLASQYFLISVWYILQTRVMEVYPEE 225

Arabidopsis thaliana (taxid: 3702)

>sp|Q945L4|WTR40_ARATH WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1

 Score =  130 bits (326), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 78/188 (41%), Positives = 114/188 (60%), Gaps = 14/188 (7%)

Query: 12  MMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLPI 70
           M++ E ++VG+    KAA S G+S  V + YS  F SL+LLP +    RS+ +PPLT  I
Sbjct: 17  MVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLPLTFFSFRSRSLPPLTFSI 76

Query: 71  LSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSS 130
           L    +LG + ++ Q  GY GI YSSPTLS+A+ N+ P FTFILA++FR+E +     SS
Sbjct: 77  LCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISLGKKSS 136

Query: 131 LAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTS 190
           +AK +GTI+ I GA ++T Y GP +LM+S             ++W+ GG LLA+  +  S
Sbjct: 137 VAKVLGTILSIIGALVVTLYHGP-MLMSS------------HSDWIIGGGLLALQYILVS 183

Query: 191 AWFIVQVR 198
             ++V   
Sbjct: 184 VSYLVMAH 191

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRS5|WTR22_ARATH WAT1-related protein At3g28100 OS=Arabidopsis thaliana GN=At3g28100 PE=2 SV=1

 Score =  122 bits (306), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/196 (40%), Positives = 118/196 (60%), Gaps = 6/196 (3%)

Query: 11  GMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLP 69
            M+  E   VG+    K A S G++   F+ YS   ASL+LLP+     RS+ +PPL+L 
Sbjct: 17  AMLATETGVVGISTLFKVATSKGLNLYAFLGYSYLLASLLLLPSLFFTDRSRSLPPLSLS 76

Query: 70  ILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSS 129
           ILS   LLG LG+     GY GI YSSPTL++A+ N+ P  TFILAIIFR+EK+ ++  S
Sbjct: 77  ILSKIGLLGLLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEKVSFKERS 136

Query: 130 SLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQ-----VFMPQTNWVFGGLLLAV 184
           S+AK +GTI+ + GA ++  Y GP + + S PP  + +     +    ++W+ GG LL +
Sbjct: 137 SVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSDWLIGGALLTI 196

Query: 185 DCVFTSAWFIVQVRFL 200
             +F S  FI+Q + +
Sbjct: 197 RDIFVSVSFILQAKIM 212

Arabidopsis thaliana (taxid: 3702)

>sp|F4JK59|WTR33_ARATH WAT1-related protein At4g15540 OS=Arabidopsis thaliana GN=At4g15540 PE=2 SV=1

 Score =  121 bits (304), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/200 (44%), Positives = 120/200 (60%), Gaps = 8/200 (4%)

Query: 3   KVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ 62
           K  + P   M+  EC  VG     KAA   G S  VFVFY+   A+LVLL  SL+F RS+
Sbjct: 12  KRDVVPFTAMIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIFGRSR 71

Query: 63  -IPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVE 121
            +P     +    FLL  LG +S+  G  GI YSSPTLS+A+ NL P FTFILAI FR+E
Sbjct: 72  SLPTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRME 131

Query: 122 KLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLL 181
           ++  RSS++ AK +GTIV I+GA ++  YKGP LL+      +S   F  +++W+ GGLL
Sbjct: 132 QVMLRSSATQAKIIGTIVSISGALVIVLYKGPKLLVA-----ASFTSF--ESSWIIGGLL 184

Query: 182 LAVDCVFTSAWFIVQVRFLR 201
           L +  +  S WFI+Q   + 
Sbjct: 185 LGLQFLLLSVWFILQTHIME 204

Arabidopsis thaliana (taxid: 3702)

>sp|F4IYZ0|WTR21_ARATH WAT1-related protein At3g28080 OS=Arabidopsis thaliana GN=At3g28080 PE=2 SV=1

 Score =  120 bits (301), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 80/197 (40%), Positives = 123/197 (62%), Gaps = 6/197 (3%)

Query: 12  MMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLPI 70
           M+  E + VGL    K A S G++   F+ YS   ASL+LLP+    +RS+ +PPL+  I
Sbjct: 18  MLAGETSIVGLSTLFKVATSKGLNIYPFLSYSYLLASLLLLPSLFFTNRSRSLPPLSASI 77

Query: 71  LSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSS 130
           LS   LLGFLG+     G  GI YS+PTL++A+ N+VP  TFILA+IFR+EK+ ++  SS
Sbjct: 78  LSKIGLLGFLGSMYVITGGIGIEYSNPTLASAIGNIVPALTFILAVIFRMEKVSFKERSS 137

Query: 131 LAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQ-----VFMPQTNWVFGGLLLAVD 185
           +AK +GTI+ + GAF++ +Y GP + + S PP  + +     +   +++W+ GG +L + 
Sbjct: 138 VAKVMGTILSLIGAFVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSKSDWLIGGAILTIQ 197

Query: 186 CVFTSAWFIVQVRFLRN 202
            +F S  FI+Q   +R 
Sbjct: 198 GIFVSVSFILQTHIMRE 214

Arabidopsis thaliana (taxid: 3702)

>sp|F4I5D5|WTR11_ARATH WAT1-related protein At1g70260 OS=Arabidopsis thaliana GN=At1g70260 PE=2 SV=1

 Score =  119 bits (299), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/204 (37%), Positives = 114/204 (55%), Gaps = 14/204 (6%)

Query: 6   LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPP 65
           L P + M + E   + L    K A++ GMS  VFV Y+ AF S++LLP S LFHR++   
Sbjct: 10  LVPFVAMAIMEACTIALTIMAKTALTGGMSPFVFVVYTNAFGSILLLPFSFLFHRNERTE 69

Query: 66  LTL---PILSAFFLLGFLGTSS-QFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVE 121
            ++   P+L   F LGF G    Q   + G+ +SSP +  A+   +P F+F+L+II    
Sbjct: 70  QSIFSWPLLVRVFFLGFTGIFMFQNLAFVGLRFSSPIVVCAMGLQIPSFSFLLSIILGRS 129

Query: 122 KLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLL-MTSLPPNSSLQVFMPQ-------- 172
           KLDWR++S+ AK +GTIV ++GAF+   YKGP +   +S  PN  L+  +P+        
Sbjct: 130 KLDWRNTSTRAKLMGTIVSLSGAFVEELYKGPFIRPASSASPNRFLKS-VPKLLVYYNLP 188

Query: 173 TNWVFGGLLLAVDCVFTSAWFIVQ 196
            NW  G + LAV     S + +VQ
Sbjct: 189 DNWFLGCIFLAVAVFSVSLFNVVQ 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYZ7|WTR20_ARATH WAT1-related protein At3g28070 OS=Arabidopsis thaliana GN=At3g28070 PE=2 SV=1

 Score =  115 bits (287), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/196 (41%), Positives = 117/196 (59%), Gaps = 6/196 (3%)

Query: 11  GMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLP- 69
            M++ E + VG+    K A S G++   F+ YS   ASL+LLP+    +RS   P     
Sbjct: 20  AMLVVETSVVGISTLFKFATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSSSLPPLSVS 79

Query: 70  ILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSS 129
           ILS   LLGFLG+     GY GI YSSPTL++A+ N+ P  TFILAIIFR+EK+ ++  S
Sbjct: 80  ILSKIGLLGFLGSMYVITGYIGIEYSSPTLASAINNITPALTFILAIIFRMEKVSFKERS 139

Query: 130 SLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMP-----QTNWVFGGLLLAV 184
           SLAK +GTI+ + GA ++ +Y GP + + S PP  + + F P      ++W+ GG LL +
Sbjct: 140 SLAKLMGTILSLIGALVVIFYHGPRVFLASSPPYVNFRQFSPPLSSSNSDWLIGGALLTM 199

Query: 185 DCVFTSAWFIVQVRFL 200
             +F S  FI+Q   +
Sbjct: 200 QGIFVSVSFILQAHIM 215

Arabidopsis thaliana (taxid: 3702)

>sp|Q56X95|WTR23_ARATH WAT1-related protein At3g28130 OS=Arabidopsis thaliana GN=At3g28130 PE=2 SV=1

 Score =  114 bits (286), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/197 (37%), Positives = 113/197 (57%), Gaps = 6/197 (3%)

Query: 11  GMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLL-FHRSQIPPLTLP 69
            M+  E  +V +    KAA S G+++  F+ YS    S+VLLP+ +  +    +P L+L 
Sbjct: 16  AMLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSIVLLPSHIFSYRSRSLPSLSLS 75

Query: 70  ILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSS 129
           IL    +LG LG++    G+ GI YS+PTL++A+ N+ P  TFILAIIFR+EK  ++  S
Sbjct: 76  ILCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEKASFKEKS 135

Query: 130 SLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQ-----VFMPQTNWVFGGLLLAV 184
           S+AK VGTIV + GA ++  Y GP +   S PP   L+     +    ++W+ GG LLA+
Sbjct: 136 SVAKMVGTIVSLVGALVVVLYHGPRVFTPSSPPFPQLRQLLLPLSSSNSDWIIGGCLLAI 195

Query: 185 DCVFTSAWFIVQVRFLR 201
                   FI+Q   ++
Sbjct: 196 KDTLVPVAFILQAHIMK 212

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
224057230	355	predicted protein [Populus trichocarpa]	0.971	0.571	0.618	8e-63
224099697	355	predicted protein [Populus trichocarpa]	0.985	0.580	0.587	2e-62
255581162	349	Auxin-induced protein 5NG4, putative [Ri	0.961	0.575	0.619	5e-61
359473421	347	PREDICTED: auxin-induced protein 5NG4 [V	0.980	0.590	0.628	2e-58
296086518	356	unnamed protein product [Vitis vinifera]	0.980	0.575	0.628	2e-58
224073013	339	predicted protein [Populus trichocarpa]	0.952	0.587	0.610	2e-57
357463769	345	Auxin-induced protein 5NG4 [Medicago tru	0.961	0.582	0.571	3e-56
147778659	335	hypothetical protein VITISV_034106 [Viti	0.880	0.549	0.574	4e-53
356518605	350	PREDICTED: auxin-induced protein 5NG4-li	0.980	0.585	0.565	9e-53
225424736	346	PREDICTED: auxin-induced protein 5NG4 [V	0.961	0.580	0.524	7e-49

>gi|224057230|ref|XP_002299184.1| predicted protein [Populus trichocarpa] gi|222846442|gb|EEE83989.1| predicted protein [Populus trichocarpa]

 Score =  245 bits (626), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 128/207 (61%), Positives = 154/207 (74%), Gaps = 4/207 (1%)

Query: 3   KVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRS- 61
           KV + P++GM+MAECA  G M  GKAAMS+GMS+ VFV YS A A L+LLP+S LFHRS 
Sbjct: 4   KVAVLPIVGMVMAECAQAGRMILGKAAMSNGMSSFVFVLYSNAIACLILLPSSFLFHRSS 63

Query: 62  QIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVE 121
           + PPLTL I+S FFLLG  G   Q F YAGI  SSPTL TA+LNLVPG TFILAIIFR+E
Sbjct: 64  ERPPLTLSIVSGFFLLGLFGCLGQSFCYAGINLSSPTLGTAMLNLVPGLTFILAIIFRME 123

Query: 122 KLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPP--NSSLQVFMPQTNWVFGG 179
            +DW+S S+LAKS+GTIV I GAFI+T YKGP LL+ +LP    SS QV + Q+NWV GG
Sbjct: 124 NVDWKSYSTLAKSMGTIVSIGGAFIVTCYKGP-LLLKALPSVTKSSHQVLLQQSNWVLGG 182

Query: 180 LLLAVDCVFTSAWFIVQVRFLRNSKSE 206
           LL+AVDC   S+W IVQ   L+   ++
Sbjct: 183 LLMAVDCATASSWLIVQALILKKYSAK 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099697|ref|XP_002311582.1| predicted protein [Populus trichocarpa] gi|222851402|gb|EEE88949.1| predicted protein [Populus trichocarpa]

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 124/211 (58%), Positives = 146/211 (69%), Gaps = 5/211 (2%)

Query: 1   MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHR 60
           MG    AP +GM+MAECA VGLM   KAAMSDGM+N +FV YS A ASL+LLP+S   HR
Sbjct: 1   MGLKAAAPFVGMVMAECAQVGLMILSKAAMSDGMTNFIFVLYSNALASLILLPSSFFLHR 60

Query: 61  SQIPPLTLPILSAFFLLGFLGTS-----SQFFGYAGIYYSSPTLSTALLNLVPGFTFILA 115
           S+ PPLT PIL  FFLLG  G +        FGYAGI  SS TL TA+LNL+PG TFILA
Sbjct: 61  SERPPLTFPILCGFFLLGLFGYAILIYFDFIFGYAGINLSSATLGTAMLNLIPGLTFILA 120

Query: 116 IIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNW 175
           + FR+EKLDW+SSS+L KS GTIV + GAFI+ YYKGP LLM     N   ++   Q NW
Sbjct: 121 VAFRMEKLDWKSSSALVKSTGTIVSVAGAFIVCYYKGPPLLMAPSTSNLPHELLSQQQNW 180

Query: 176 VFGGLLLAVDCVFTSAWFIVQVRFLRNSKSE 206
           + GGLLLAVDCV  SAW I+Q   L+   +E
Sbjct: 181 IIGGLLLAVDCVMASAWLIIQALILKKYPAE 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581162|ref|XP_002531394.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528987|gb|EEF30978.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 127/205 (61%), Positives = 153/205 (74%), Gaps = 4/205 (1%)

Query: 3   KVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ 62
           KV L P +GM++AECA VGLM   K AMS GMS+ +FV YS A ASL+LLP SLL  R++
Sbjct: 4   KVAL-PFVGMVIAECAQVGLMIISKVAMSKGMSSFIFVCYSNALASLILLPFSLLHRRTE 62

Query: 63  IPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEK 122
            PPLT  I+  FFLLG  G  +QFFGYAGI  SSPTL TA+LNLVPG TFILA+ FR+EK
Sbjct: 63  RPPLTFSIVCGFFLLGLFGCLAQFFGYAGINLSSPTLGTAMLNLVPGLTFILAVAFRMEK 122

Query: 123 LDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMT-SLPPNSSLQVFMPQTNWVFGGLL 181
           LD R+SSSLAKS+GTI+ + GAFI+TYYKGP +L+T SL  NSS Q+    +NW+ GGLL
Sbjct: 123 LDGRTSSSLAKSMGTIISVGGAFILTYYKGPLVLLTPSL--NSSHQLLTQPSNWIIGGLL 180

Query: 182 LAVDCVFTSAWFIVQVRFLRNSKSE 206
           LA DCV TSAW I+Q   L+   +E
Sbjct: 181 LAADCVMTSAWIIIQALILKIYPAE 205

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473421|ref|XP_002266928.2| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera]

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 130/207 (62%), Positives = 153/207 (73%), Gaps = 2/207 (0%)

Query: 1   MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHR 60
           MG  G A   GM+MAE A VGLM A KAA+S GM NLVF+ YS   ASL+LLP+ LLFHR
Sbjct: 1   MGMKGAAAYAGMVMAEFAQVGLMIASKAAISSGMPNLVFILYSNTLASLILLPSCLLFHR 60

Query: 61  SQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRV 120
           S  P LT  +LS FFLL  LG  +Q FGYAGI YSS TL TA+LNLVPGFTFILAIIFR+
Sbjct: 61  SPRPQLTFSLLSGFFLLALLGFFAQIFGYAGIQYSSATLGTAMLNLVPGFTFILAIIFRM 120

Query: 121 EKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFM-PQTNWVFGG 179
           E+LDWR  SS+AKS+GT+V I GAFI+T+YKG  +LMT  P N   Q+F+  Q+NWVFGG
Sbjct: 121 ERLDWR-GSSMAKSMGTVVSIAGAFIVTFYKGSPILMTPSPSNFPDQLFLSQQSNWVFGG 179

Query: 180 LLLAVDCVFTSAWFIVQVRFLRNSKSE 206
           LLLA DCV +SAW I+Q   L+   +E
Sbjct: 180 LLLAADCVMSSAWLILQASILKKYPAE 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086518|emb|CBI32107.3| unnamed protein product [Vitis vinifera]

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 130/207 (62%), Positives = 153/207 (73%), Gaps = 2/207 (0%)

Query: 1   MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHR 60
           MG  G A   GM+MAE A VGLM A KAA+S GM NLVF+ YS   ASL+LLP+ LLFHR
Sbjct: 1   MGMKGAAAYAGMVMAEFAQVGLMIASKAAISSGMPNLVFILYSNTLASLILLPSCLLFHR 60

Query: 61  SQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRV 120
           S  P LT  +LS FFLL  LG  +Q FGYAGI YSS TL TA+LNLVPGFTFILAIIFR+
Sbjct: 61  SPRPQLTFSLLSGFFLLALLGFFAQIFGYAGIQYSSATLGTAMLNLVPGFTFILAIIFRM 120

Query: 121 EKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFM-PQTNWVFGG 179
           E+LDWR  SS+AKS+GT+V I GAFI+T+YKG  +LMT  P N   Q+F+  Q+NWVFGG
Sbjct: 121 ERLDWR-GSSMAKSMGTVVSIAGAFIVTFYKGSPILMTPSPSNFPDQLFLSQQSNWVFGG 179

Query: 180 LLLAVDCVFTSAWFIVQVRFLRNSKSE 206
           LLLA DCV +SAW I+Q   L+   +E
Sbjct: 180 LLLAADCVMSSAWLILQASILKKYPAE 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073013|ref|XP_002303950.1| predicted protein [Populus trichocarpa] gi|222841382|gb|EEE78929.1| predicted protein [Populus trichocarpa]

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 124/203 (61%), Positives = 151/203 (74%), Gaps = 4/203 (1%)

Query: 3   KVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ 62
           KV + P++GM+MAECA  G M AGKAAMS+GMS+ VFV YS   AS++LLP+SL+FHR Q
Sbjct: 4   KVAVLPIVGMIMAECAQAGRMIAGKAAMSNGMSSFVFVLYSNTIASIILLPSSLIFHRPQ 63

Query: 63  -IPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVE 121
             PPLTL I+  FFLLG  G   Q FGYAGI  SSP L TA+LN VPG TF+LA+IFR+E
Sbjct: 64  ERPPLTLSIVFGFFLLGLFGCLGQSFGYAGINLSSPALGTAMLNTVPGLTFVLAVIFRME 123

Query: 122 KLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLP--PNSSLQVFMPQTNWVFGG 179
           K+D RS S+LAKS+GTI+ + GAF++TYYKGP LL+ +LP   NSS QV    +NWV GG
Sbjct: 124 KVDCRSYSTLAKSMGTIISMGGAFVVTYYKGP-LLLKALPSASNSSHQVLSQHSNWVLGG 182

Query: 180 LLLAVDCVFTSAWFIVQVRFLRN 202
           LLLAVDC   S+W IVQ   L+ 
Sbjct: 183 LLLAVDCTMASSWLIVQALILKK 205

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463769|ref|XP_003602166.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355491214|gb|AES72417.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 116/203 (57%), Positives = 144/203 (70%), Gaps = 2/203 (0%)

Query: 1   MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHR 60
           MGKV + P +GM++AEC  V L+   K  MS GM++ +F+FYS   A+LVLLP+S   HR
Sbjct: 1   MGKVTV-PFVGMIIAECIQVALIILSKQVMSQGMTSFIFIFYSNTIAALVLLPSSFFIHR 59

Query: 61  SQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRV 120
            Q PP+T   LS FF+LG LG  +Q FGYAGI YSS TL+TA+LNLVPGFTFILA++FR+
Sbjct: 60  FQRPPITFSTLSGFFILGLLGYLAQVFGYAGINYSSSTLATAMLNLVPGFTFILAVLFRM 119

Query: 121 EKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQ-VFMPQTNWVFGG 179
           E+LDWRS SSLAKS+GTIV I GAFI T YKG  LL    P N S Q +F   ++W+ GG
Sbjct: 120 EELDWRSPSSLAKSLGTIVSIAGAFIATLYKGAALLKGPSPANFSQQPLFSQDSDWILGG 179

Query: 180 LLLAVDCVFTSAWFIVQVRFLRN 202
           L LA DCV  S++ IVQ   L+ 
Sbjct: 180 LFLAADCVMASSFTIVQASILKK 202

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147778659|emb|CAN71719.1| hypothetical protein VITISV_034106 [Vitis vinifera]

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 119/207 (57%), Positives = 142/207 (68%), Gaps = 23/207 (11%)

Query: 1   MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHR 60
           MG  G A   GM+MAE A VGLM A KAA+S GM NLVF+ YS   ASL+LLP+ LLFH 
Sbjct: 1   MGMKGAAAYAGMVMAEFAQVGLMIASKAAISSGMPNLVFILYSNTLASLILLPSCLLFH- 59

Query: 61  SQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRV 120
                       +FF        +Q FGYAGI YSS TL TA+LNLVPGFTFILAIIFR+
Sbjct: 60  ------------SFF--------AQIFGYAGIQYSSATLGTAMLNLVPGFTFILAIIFRM 99

Query: 121 EKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFM-PQTNWVFGG 179
           E+LDWR  SS+AKS+GT+V I GAFI+T+YKG  +LMT  P N   Q+F+  Q+NWVFGG
Sbjct: 100 ERLDWR-GSSMAKSMGTVVSIAGAFIVTFYKGSPILMTPSPSNFPDQLFLSQQSNWVFGG 158

Query: 180 LLLAVDCVFTSAWFIVQVRFLRNSKSE 206
           LLLA DCV +SAW I+Q   L+   +E
Sbjct: 159 LLLAADCVMSSAWLILQASILKKYPAE 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518605|ref|XP_003527969.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  212 bits (539), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 117/207 (56%), Positives = 146/207 (70%), Gaps = 2/207 (0%)

Query: 1   MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHR 60
           MGK+ L P +GM+MAE A VGL+   K  M+ GM+N +F+FYS +  +L+LLP SLL HR
Sbjct: 1   MGKLTL-PFVGMIMAEFAQVGLIILSKQVMAQGMTNFIFIFYSNSIGALLLLPISLLIHR 59

Query: 61  SQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRV 120
            + PP+T   L  FFLL  LG  +Q FGYAGIYY S TLST++LNLVPGFTFILA++FR+
Sbjct: 60  FERPPITFSTLCGFFLLALLGYLAQAFGYAGIYYGSATLSTSILNLVPGFTFILAVLFRM 119

Query: 121 EKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQ-TNWVFGG 179
           EKLDWR  SSLAK +GTIV I GAFI+T YKGP LLM     N+S Q  + + +NW+  G
Sbjct: 120 EKLDWRKLSSLAKLLGTIVSIAGAFIVTLYKGPALLMGVSSANTSQQPLLSEDSNWILAG 179

Query: 180 LLLAVDCVFTSAWFIVQVRFLRNSKSE 206
           L LA DCV  SA+ IVQ   L+   +E
Sbjct: 180 LFLAADCVMASAYIIVQASILKKYPAE 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424736|ref|XP_002266139.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera] gi|296086519|emb|CBI32108.3| unnamed protein product [Vitis vinifera]

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 142/202 (70%), Gaps = 1/202 (0%)

Query: 1   MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHR 60
           MG V L P +GM++     V  M   K AMS+G+S+ V V YS A ++++LLP SLLFHR
Sbjct: 4   MGTVSL-PFLGMVIVVFTQVTNMIVSKMAMSNGLSSFVLVLYSNAISAVILLPLSLLFHR 62

Query: 61  SQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRV 120
           S  PPLT  IL  FFLL  +G  +Q FGYAG+ YSSPTL +A+LNLVP FTFILA+I R+
Sbjct: 63  SPRPPLTFSILCRFFLLALIGCFAQIFGYAGVQYSSPTLGSAMLNLVPAFTFILAVICRM 122

Query: 121 EKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGL 180
           EKL+ + SSSLAKSVG +V + GAF++T+YKGP ++ +S   +SS Q+F  Q++WV GG 
Sbjct: 123 EKLELKKSSSLAKSVGALVSVAGAFVVTFYKGPPIMFSSSFSDSSNQIFSSQSHWVLGGF 182

Query: 181 LLAVDCVFTSAWFIVQVRFLRN 202
           LLA + +  S W+I+Q   L+ 
Sbjct: 183 LLADESLLASMWYILQATILKK 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.947	0.539	0.445	4.2e-40
TAIR|locus:2173752	370	UMAMIT37 "AT5G40230" [Arabidop	0.933	0.527	0.445	8.9e-38
TAIR|locus:2091383	360	UMAMIT46 "AT3G28070" [Arabidop	0.904	0.525	0.425	1.5e-35
TAIR|locus:2130344	347	UMAMIT38 "AT4G15540" [Arabidop	0.913	0.550	0.447	1.9e-35
TAIR|locus:2091393	358	UMAMIT47 "AT3G28080" [Arabidop	0.909	0.530	0.413	8.3e-35
TAIR|locus:2091338	353	UMAMIT45 "AT3G28100" [Arabidop	0.904	0.535	0.415	3.6e-34
TAIR|locus:2091368	355	UMAMIT44 "AT3G28130" [Arabidop	0.909	0.535	0.397	4.1e-33
TAIR|locus:2173737	339	UMAMIT42 "Usually multiple aci	0.818	0.504	0.421	6.9e-31
TAIR|locus:2020688	375	UMAMIT36 "AT1G70260" [Arabidop	0.904	0.504	0.390	7.1e-29
TAIR|locus:2125167	365	UMAMIT29 "Usually multiple aci	0.909	0.520	0.355	1.2e-26

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 89/200 (44%), Positives = 126/200 (63%)

Query:     8 PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPL 66
             PV  +++ ECA+VGL    KAA   GMS  VF+ YS   A+L+LLP+     RS+ +PP+
Sbjct:    12 PVTALVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAALLLLPSLFCSFRSRTLPPM 71

Query:    67 TLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWR 126
                IL    LLG +G  S   GY GI YSSPTL++A+ NL P FTF+LA++FR+E + ++
Sbjct:    72 NFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFRMESVSFK 131

Query:   127 SSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDC 186
              +SS+AK +GT+V I GAFI+T Y GP ++  S PP+ SL+      NW+ G   LAV+ 
Sbjct:   132 RTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKS-PPSVSLRSQSTNPNWILGAGFLAVEY 190

Query:   187 VFTSAWFIVQVRFLRNSKSE 206
                  W+IVQ + +R   +E
Sbjct:   191 FCVPLWYIVQTQIMREYPAE 210

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173752 UMAMIT37 "AT5G40230" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 90/202 (44%), Positives = 125/202 (61%)

Query:     6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IP 64
             + P   M+  EC  VG     KAA   G+S  VFVFY+   A+LVLLP SL+F RS+ +P
Sbjct:    19 VVPFTAMVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRSKRLP 78

Query:    65 PLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLD 124
                 P+    FLL  +G  S   G  GI YSSPTL++A+ NL P FTF LA+IFR+E++ 
Sbjct:    79 SAKTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQIV 138

Query:   125 WRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLM-TSL-PPNSSLQVFMPQTN----WVFG 178
              RSS++ AK +GTIV I+GA ++  YKGP +L   SL PP+ ++ ++   T+    W+ G
Sbjct:   139 LRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWIIG 198

Query:   179 GLLLAVDCVFTSAWFIVQVRFL 200
             GLLLA   +  S W+I+Q R +
Sbjct:   199 GLLLATQYLLVSVWYILQTRVM 220

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091383 UMAMIT46 "AT3G28070" [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 83/195 (42%), Positives = 122/195 (62%)

Query:    12 MMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLPI 70
             M++ E + VG+    K A S G++   F+ YS   ASL+LLP+    +RS  +PPL++ I
Sbjct:    21 MLVVETSVVGISTLFKFATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSSSLPPLSVSI 80

Query:    71 LSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSS 130
             LS   LLGFLG+     GY GI YSSPTL++A+ N+ P  TFILAIIFR+EK+ ++  SS
Sbjct:    81 LSKIGLLGFLGSMYVITGYIGIEYSSPTLASAINNITPALTFILAIIFRMEKVSFKERSS 140

Query:   131 LAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMP-----QTNWVFGGLLLAVD 185
             LAK +GTI+ + GA ++ +Y GP + + S PP  + + F P      ++W+ GG LL + 
Sbjct:   141 LAKLMGTILSLIGALVVIFYHGPRVFLASSPPYVNFRQFSPPLSSSNSDWLIGGALLTMQ 200

Query:   186 CVFTSAWFIVQVRFL 200
              +F S  FI+Q   +
Sbjct:   201 GIFVSVSFILQAHIM 215

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2130344 UMAMIT38 "AT4G15540" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 89/199 (44%), Positives = 120/199 (60%)

Query:     3 KVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ 62
             K  + P   M+  EC  VG     KAA   G S  VFVFY+   A+LVLL  SL+F RS+
Sbjct:    12 KRDVVPFTAMIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIFGRSR 71

Query:    63 -IPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVE 121
              +P     +    FLL  LG +S+  G  GI YSSPTLS+A+ NL P FTFILAI FR+E
Sbjct:    72 SLPTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRME 131

Query:   122 KLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLL 181
             ++  RSS++ AK +GTIV I+GA ++  YKGP LL+ +     S   F  +++W+ GGLL
Sbjct:   132 QVMLRSSATQAKIIGTIVSISGALVIVLYKGPKLLVAA-----SFTSF--ESSWIIGGLL 184

Query:   182 LAVDCVFTSAWFIVQVRFL 200
             L +  +  S WFI+Q   +
Sbjct:   185 LGLQFLLLSVWFILQTHIM 203

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091393 UMAMIT47 "AT3G28080" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 81/196 (41%), Positives = 123/196 (62%)

Query:    12 MMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLPI 70
             M+  E + VGL    K A S G++   F+ YS   ASL+LLP+    +RS+ +PPL+  I
Sbjct:    18 MLAGETSIVGLSTLFKVATSKGLNIYPFLSYSYLLASLLLLPSLFFTNRSRSLPPLSASI 77

Query:    71 LSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSS 130
             LS   LLGFLG+     G  GI YS+PTL++A+ N+VP  TFILA+IFR+EK+ ++  SS
Sbjct:    78 LSKIGLLGFLGSMYVITGGIGIEYSNPTLASAIGNIVPALTFILAVIFRMEKVSFKERSS 137

Query:   131 LAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMP-----QTNWVFGGLLLAVD 185
             +AK +GTI+ + GAF++ +Y GP + + S PP  + +   P     +++W+ GG +L + 
Sbjct:   138 VAKVMGTILSLIGAFVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSKSDWLIGGAILTIQ 197

Query:   186 CVFTSAWFIVQVRFLR 201
              +F S  FI+Q   +R
Sbjct:   198 GIFVSVSFILQTHIMR 213

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2091338 UMAMIT45 "AT3G28100" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 81/195 (41%), Positives = 118/195 (60%)

Query:    12 MMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLPI 70
             M+  E   VG+    K A S G++   F+ YS   ASL+LLP+     RS+ +PPL+L I
Sbjct:    18 MLATETGVVGISTLFKVATSKGLNLYAFLGYSYLLASLLLLPSLFFTDRSRSLPPLSLSI 77

Query:    71 LSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSS 130
             LS   LLG LG+     GY GI YSSPTL++A+ N+ P  TFILAIIFR+EK+ ++  SS
Sbjct:    78 LSKIGLLGLLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEKVSFKERSS 137

Query:   131 LAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMP-----QTNWVFGGLLLAVD 185
             +AK +GTI+ + GA ++  Y GP + + S PP  + +   P      ++W+ GG LL + 
Sbjct:   138 VAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSDWLIGGALLTIR 197

Query:   186 CVFTSAWFIVQVRFL 200
              +F S  FI+Q + +
Sbjct:   198 DIFVSVSFILQAKIM 212

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091368 UMAMIT44 "AT3G28130" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 78/196 (39%), Positives = 118/196 (60%)

Query:    12 MMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLPI 70
             M+  E  +V +    KAA S G+++  F+ YS    S+VLLP+ +  +RS+ +P L+L I
Sbjct:    17 MLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSIVLLPSHIFSYRSRSLPSLSLSI 76

Query:    71 LSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSS 130
             L    +LG LG++    G+ GI YS+PTL++A+ N+ P  TFILAIIFR+EK  ++  SS
Sbjct:    77 LCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEKASFKEKSS 136

Query:   131 LAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSL-QVFMP----QTNWVFGGLLLAVD 185
             +AK VGTIV + GA ++  Y GP +   S PP   L Q+ +P     ++W+ GG LLA+ 
Sbjct:   137 VAKMVGTIVSLVGALVVVLYHGPRVFTPSSPPFPQLRQLLLPLSSSNSDWIIGGCLLAIK 196

Query:   186 CVFTSAWFIVQVRFLR 201
                    FI+Q   ++
Sbjct:   197 DTLVPVAFILQAHIMK 212

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2173737 UMAMIT42 "Usually multiple acids move in and out Transporters 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 78/185 (42%), Positives = 114/185 (61%)

Query:    12 MMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLPI 70
             M++ E ++VG+    KAA S G+S  V + YS  F SL+LLP +    RS+ +PPLT  I
Sbjct:    17 MVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLPLTFFSFRSRSLPPLTFSI 76

Query:    71 LSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSS 130
             L    +LG + ++ Q  GY GI YSSPTLS+A+ N+ P FTFILA++FR+E +     SS
Sbjct:    77 LCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISLGKKSS 136

Query:   131 LAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTS 190
             +AK +GTI+ I GA ++T Y GP +LM+S             ++W+ GG LLA+  +  S
Sbjct:   137 VAKVLGTILSIIGALVVTLYHGP-MLMSS------------HSDWIIGGGLLALQYILVS 183

Query:   191 AWFIV 195
               ++V
Sbjct:   184 VSYLV 188

GO:0016020 "membrane" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2020688 UMAMIT36 "AT1G70260" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 80/205 (39%), Positives = 118/205 (57%)

Query:     6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPP 65
             L P + M + E   + L    K A++ GMS  VFV Y+ AF S++LLP S LFHR++   
Sbjct:    10 LVPFVAMAIMEACTIALTIMAKTALTGGMSPFVFVVYTNAFGSILLLPFSFLFHRNERTE 69

Query:    66 LTL---PILSAFFLLGFLGTSS-QFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVE 121
              ++   P+L   F LGF G    Q   + G+ +SSP +  A+   +P F+F+L+II    
Sbjct:    70 QSIFSWPLLVRVFFLGFTGIFMFQNLAFVGLRFSSPIVVCAMGLQIPSFSFLLSIILGRS 129

Query:   122 KLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLL-MTSLPPNSSLQ------VF--MPQ 172
             KLDWR++S+ AK +GTIV ++GAF+   YKGP +   +S  PN  L+      V+  +P 
Sbjct:   130 KLDWRNTSTRAKLMGTIVSLSGAFVEELYKGPFIRPASSASPNRFLKSVPKLLVYYNLPD 189

Query:   173 TNWVFGGLLLAVDCVFTSAWF-IVQ 196
              NW  G + LAV  VF+ + F +VQ
Sbjct:   190 -NWFLGCIFLAV-AVFSVSLFNVVQ 212

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2125167 UMAMIT29 "Usually multiple acids move in and out Transporters 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 70/197 (35%), Positives = 112/197 (56%)

Query:     7 APVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPL 66
             APVI M+++  A   +    K A+  G+++++F  Y  A ++L+L+P S ++ R   P L
Sbjct:     8 APVIVMLISSVAMGSVNALVKKALDVGVNHMIFGAYRMAISALILVPFSYIWERKTRPQL 67

Query:    67 TLPILSAFFLLGFLGTS-SQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKL-D 124
             T  +L   F+ G LG S  QFF   G+ Y+S T+S AL++++P  TF LA+IFR+E   +
Sbjct:    68 TFMLLCEHFISGLLGASLMQFFFLLGLSYTSATVSMALVSMLPAITFALALIFRIENAQN 127

Query:   125 WRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPP----NSSLQVFMPQTN-WVFGG 179
              +S + + K +GT++ I GA ++T+YKGP L      P    N++      QT  W+ G 
Sbjct:   128 LKSKAGVLKVMGTLICIMGAMLLTFYKGPELSNPHSHPQARHNNNNNNGHDQTKKWLLGC 187

Query:   180 LLLAVDCVFTSAWFIVQ 196
             L L +  V  S W + Q
Sbjct:   188 LYLVIGTVLLSLWMLFQ 204

GO:0016020 "membrane" evidence=IEA

GO:0009830 "cell wall modification involved in abscission" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	209
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	3e-39
pfam00892	126	pfam00892, EamA, EamA-like transporter family	7e-04

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  137 bits (346), Expect = 3e-39
 Identities = 80/196 (40%), Positives = 121/196 (61%), Gaps = 6/196 (3%)

Query: 12  MMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLPI 70
           M+  E + VG+    K A S G++   F+ YS   ASL+LLP+    +RS+ +PPL++ I
Sbjct: 18  MLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSI 77

Query: 71  LSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSS 130
           LS   LLGFLG+     GY GI YS+PTL++A+ N+ P  TFILAIIFR+EK+ ++  SS
Sbjct: 78  LSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSS 137

Query: 131 LAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMP-----QTNWVFGGLLLAVD 185
           +AK +GTI+ + GA ++ +Y GP + + S PP  + +   P      ++W+ GG LL + 
Sbjct: 138 VAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQ 197

Query: 186 CVFTSAWFIVQVRFLR 201
            +F S  FI+Q   + 
Sbjct: 198 GIFVSVSFILQAHIMS 213

Length = 358

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 24/113 (21%), Positives = 48/113 (42%)

Query: 30  MSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGY 89
           + + +S L F  Y    A ++L+    L  +         IL+  +L  F         +
Sbjct: 13  LLERISPLTFTAYRFLIAGILLILLLFLLRKPFALLSLKAILALLYLGLFGTALGYLLYF 72

Query: 90  AGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLIT 142
             + Y S + ++ + +L P FT IL+++   EKL  +    +   +  ++LI 
Sbjct: 73  YALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVLILLGVLLIL 125

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
PLN00411	358	nodulin MtN21 family protein; Provisional	99.97
PRK11272	292	putative DMT superfamily transporter inner membran	99.9
PRK11689	295	aromatic amino acid exporter; Provisional	99.9
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.89
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.88
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.87
PRK15430	296	putative chloramphenical resistance permease RarD;	99.86
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.83
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.83
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.77
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.75
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.69
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.69
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.63
COG2510	140	Predicted membrane protein [Function unknown]	99.55
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.47
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.45
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.41
COG2962	293	RarD Predicted permeases [General function predict	99.37
PRK11272	292	putative DMT superfamily transporter inner membran	99.29
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.28
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.27
PLN00411	358	nodulin MtN21 family protein; Provisional	99.17
PRK11689	295	aromatic amino acid exporter; Provisional	99.15
KOG2765	416	consensus Predicted membrane protein [Function unk	99.13
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.11
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.07
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.04
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.03
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.97
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.88
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.85
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.74
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.72
PRK15430	296	putative chloramphenical resistance permease RarD;	98.71
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.7
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.62
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.4
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.39
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.39
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.15
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.0
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.88
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.72
PRK13499	345	rhamnose-proton symporter; Provisional	97.72
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.7
KOG3912	372	consensus Predicted integral membrane protein [Gen	97.67
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.65
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.65
KOG2766	336	consensus Predicted membrane protein [Function unk	97.62
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	97.56
KOG1443	349	consensus Predicted integral membrane protein [Fun	97.41
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.22
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.18
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.17
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	97.16
COG2076	106	EmrE Membrane transporters of cations and cationic	97.13
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.08
PRK11431	105	multidrug efflux system protein; Provisional	96.95
COG2962	293	RarD Predicted permeases [General function predict	96.89
PRK13499	345	rhamnose-proton symporter; Provisional	96.86
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	96.85
KOG1580	337	consensus UDP-galactose transporter related protei	96.78
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.69
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.52
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.35
KOG2765	416	consensus Predicted membrane protein [Function unk	95.52
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	95.21
KOG1581	327	consensus UDP-galactose transporter related protei	94.99
KOG1580	337	consensus UDP-galactose transporter related protei	94.48
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	93.5
KOG2922	335	consensus Uncharacterized conserved protein [Funct	92.64
KOG1581	327	consensus UDP-galactose transporter related protei	92.41
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	91.97
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	91.88
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	89.66
KOG3912	372	consensus Predicted integral membrane protein [Gen	89.45
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	87.95
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	87.61
KOG1443	349	consensus Predicted integral membrane protein [Fun	86.69
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	84.53
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	84.01
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	81.57

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.97  E-value=2.2e-29  Score=217.91  Aligned_cols=205  Identities=39%  Similarity=0.642  Sum_probs=165.1

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHHH
Q 028439            3 KVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLPILSAFFLLGFLG   81 (209)
Q Consensus         3 ~~~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~-~~~~~~~~~~~~~~lg~~g   81 (209)
                      .++.++|++++.+++.+++..++.|.+++.|++|..+.++|+.+|+++++|+.+.++|++ +++.+++++..+.++|+++
T Consensus         9 ~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g   88 (358)
T PLN00411          9 RREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG   88 (358)
T ss_pred             hhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999987655432 3444578889999999998


Q ss_pred             HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCC--
Q 028439           82 TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTS--  159 (209)
Q Consensus        82 ~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~--  159 (209)
                      ..++.++++|++|++|++++++.+++|+++++++++++.|+++.+++.++.|++|++++++|+.++...+++.....+  
T Consensus        89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~  168 (358)
T PLN00411         89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSP  168 (358)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccc
Confidence            667889999999999999999999999999999999976766666667778899999999999988754443211000  


Q ss_pred             CCCCC---CcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 028439          160 LPPNS---SLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSKSEN  207 (209)
Q Consensus       160 ~~~~~---~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~~~~  207 (209)
                      .+.+.   +......+.++..|++++++|+++||+|++++|+..++||++.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~  219 (358)
T PLN00411        169 PYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAF  219 (358)
T ss_pred             ccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHh
Confidence            00000   0000112234567999999999999999999999999998763

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.90  E-value=5.7e-22  Score=167.49  Aligned_cols=170  Identities=14%  Similarity=0.067  Sum_probs=139.3

Q ss_pred             ccchHH-HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 028439            3 KVGLAP-VIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG   81 (209)
Q Consensus         3 ~~~~~~-~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g   81 (209)
                      -++..+ .+.++...++||.+++++|...+ ++||..++++|+.+++++++++...+  +++ ..+++++.+....|.++
T Consensus         3 ~~~~~~~~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~--~~~-~~~~~~~~~~~~~g~~~   78 (292)
T PRK11272          3 FRQLLPLFGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLR--GHP-LPTLRQWLNAALIGLLL   78 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHh--CCC-CCcHHHHHHHHHHHHHH
Confidence            344444 35677789999999999999876 69999999999999999998876542  222 23567888889999998


Q ss_pred             -HHHHHHHHHHh-hccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCC
Q 028439           82 -TSSQFFGYAGI-YYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTS  159 (209)
Q Consensus        82 -~~~~~~~~~gl-~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~  159 (209)
                       ..++.+++.+. +++++++++++.++.|+++.+++++ +|||++++      +++|++++++|+.++... +.      
T Consensus        79 ~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~-~~------  144 (292)
T PRK11272         79 LAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSG-GN------  144 (292)
T ss_pred             HHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcC-cc------
Confidence             88899999999 9999999999999999999999986 69998765      599999999999887521 10      


Q ss_pred             CCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028439          160 LPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRN  202 (209)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~  202 (209)
                                 . ++...|+++.++++++||.|.+..||..++
T Consensus       145 -----------~-~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~  175 (292)
T PRK11272        145 -----------L-SGNPWGAILILIASASWAFGSVWSSRLPLP  175 (292)
T ss_pred             -----------c-ccchHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence                       1 112479999999999999999999997544

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.90  E-value=2.7e-22  Score=169.69  Aligned_cols=178  Identities=14%  Similarity=0.107  Sum_probs=134.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 028439            5 GLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TS   83 (209)
Q Consensus         5 ~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g-~~   83 (209)
                      +.++++.++.+.++||+++++.|.+.+ ++||..+.++|+.+|++++.++.   .++   +.++ +.++..+.+.++ ..
T Consensus         2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~-~~~P~~~~~~R~~~a~l~l~~~~---~~~---~~~~-~~~~~~~~~~l~~~~   73 (295)
T PRK11689          2 SQKATLIGLIAILLWSTMVGLIRGVSE-SLGPVGGAAMIYSVSGLLLLLTV---GFP---RLRQ-FPKRYLLAGGLLFVS   73 (295)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHHHHc---ccc---cccc-ccHHHHHHHhHHHHH
Confidence            567788999999999999999999886 59999999999999999988752   111   1111 122344556667 88


Q ss_pred             HHHHHHHHhhc----cchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCC
Q 028439           84 SQFFGYAGIYY----SSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTS  159 (209)
Q Consensus        84 ~~~~~~~gl~~----t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~  159 (209)
                      ++.+++.|+++    +++++++++.++.|+++.+++++++|||++++      |++|++++++|++++... ++..+..+
T Consensus        74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~-~~~~~~~~  146 (295)
T PRK11689         74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGG-DNGLSLAE  146 (295)
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecC-Cccchhhh
Confidence            88888888865    57888999999999999999999999998765      599999999999887632 11000000


Q ss_pred             CCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028439          160 LPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSKS  205 (209)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~~  205 (209)
                      .        .....+...|+++.++|++|||+|+++.||..+++++
T Consensus       147 ~--------~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~  184 (295)
T PRK11689        147 L--------INNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKNG  184 (295)
T ss_pred             h--------hhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCCc
Confidence            0        0000122469999999999999999999998877654

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.89  E-value=2.4e-21  Score=164.19  Aligned_cols=166  Identities=14%  Similarity=0.097  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 028439            8 PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TSSQF   86 (209)
Q Consensus         8 ~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g-~~~~~   86 (209)
                      ..+..+.+.++||.+++++|.+.+ ++||.++.++|+.++++.++++.  + ++   +.+++   .....|+.. ..++.
T Consensus         5 ~~l~~l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~--~-~~---~~~~~---~~~~~g~~~~~~~~~   74 (299)
T PRK11453          5 DGVLALLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV--A-RP---KVPLN---LLLGYGLTISFGQFA   74 (299)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh--c-CC---CCchH---HHHHHHHHHHHHHHH
Confidence            346678889999999999999886 59999999999999887766542  1 21   12222   345567766 67777


Q ss_pred             HHHHHhhc-cchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCC
Q 028439           87 FGYAGIYY-SSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSS  165 (209)
Q Consensus        87 ~~~~gl~~-t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~  165 (209)
                      +++.++++ .++++++++.++.|+++.+++++++|||++++      +++|++++++|+.++... +.            
T Consensus        75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~~-~~------------  135 (299)
T PRK11453         75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIED-SL------------  135 (299)
T ss_pred             HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhccc-cC------------
Confidence            88899998 58899999999999999999999999999765      599999999999887621 10            


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 028439          166 LQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSKSE  206 (209)
Q Consensus       166 ~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~~~  206 (209)
                          ...+....|+++.++++++|++|++++||..++++++
T Consensus       136 ----~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~  172 (299)
T PRK11453        136 ----NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRP  172 (299)
T ss_pred             ----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence                0112234799999999999999999999987776543

>TIGR00688 rarD rarD protein

Probab=99.88  E-value=2.3e-21  Score=160.61  Aligned_cols=163  Identities=12%  Similarity=0.081  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCHHH-HHHHHHHHHH
Q 028439            7 APVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-----IPPLTLPI-LSAFFLLGFL   80 (209)
Q Consensus         7 ~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~-----~~~~~~~~-~~~~~~lg~~   80 (209)
                      |++..++++.++||.++++.|. .. ++||.++.++|+.++++++.++...+++++     .++.++++ +..+.+.|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            5788999999999999999998 44 599999999999999988877654332211     11122232 4445666666


Q ss_pred             HHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCC
Q 028439           81 GTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSL  160 (209)
Q Consensus        81 g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~  160 (209)
                      +..++.+++++++++++++++++.++.|+++++++++++|||++++      +++|++++++|+.++...++        
T Consensus        80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~~--------  145 (256)
T TIGR00688        80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLKG--------  145 (256)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHcC--------
Confidence            6899999999999999999999999999999999999999999865      59999999999988753211        


Q ss_pred             CCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028439          161 PPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLR  201 (209)
Q Consensus       161 ~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~  201 (209)
                                 +..     .+.+++++||+.|.+..|+..+
T Consensus       146 -----------~~~-----~~~l~aa~~~a~~~i~~~~~~~  170 (256)
T TIGR00688       146 -----------SLP-----WEALVLAFSFTAYGLIRKALKN  170 (256)
T ss_pred             -----------Cch-----HHHHHHHHHHHHHHHHHhhcCC
Confidence                       111     3468899999999999998754

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.87  E-value=4e-21  Score=158.86  Aligned_cols=155  Identities=18%  Similarity=0.124  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhccch
Q 028439           19 HVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TSSQFFGYAGIYYSSP   97 (209)
Q Consensus        19 wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g-~~~~~~~~~gl~~t~a   97 (209)
                      ||.++++.|..++++.||..+.+.|+..+.+.+.++...  +     .+++++.+....|.++ .+++.++++|++++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~   73 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV   73 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            899999999998877999999999999998888776422  2     2356677888999999 9999999999999999


Q ss_pred             hHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCchHHH
Q 028439           98 TLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVF  177 (209)
Q Consensus        98 ~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  177 (209)
                      ++++++.++.|+++++++.+++|||++++      ++.|++++++|+.++.. ++                  ..++...
T Consensus        74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~-~~------------------~~~~~~~  128 (260)
T TIGR00950        74 GEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLS-DG------------------NLSINPA  128 (260)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhcc-CC------------------cccccHH
Confidence            99999999999999999999999999765      58999999999988752 11                  0112358


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028439          178 GGLLLAVDCVFTSAWFIVQVRFLRNSKS  205 (209)
Q Consensus       178 G~~l~l~aa~~~a~y~vl~k~~~~~~~~  205 (209)
                      |+++.++++++|+.|.+..|+..+++++
T Consensus       129 G~~~~l~a~~~~a~~~~~~k~~~~~~~~  156 (260)
T TIGR00950       129 GLLLGLGSGISFALGTVLYKRLVKKEGP  156 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhcCCc
Confidence            9999999999999999999999887764

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.86  E-value=6.8e-21  Score=161.25  Aligned_cols=164  Identities=9%  Similarity=-0.039  Sum_probs=130.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC--C-CCCHHHHHHHHHHHHH
Q 028439            4 VGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQI--P-PLTLPILSAFFLLGFL   80 (209)
Q Consensus         4 ~~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~--~-~~~~~~~~~~~~lg~~   80 (209)
                      ++.|+++.++.+.++||.++++.|.. . ++||.++.++|+.++.+++.++...+++++.  + ..+++++. ....+.+
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   81 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF-MLAVSAV   81 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH-HHHHHHH
Confidence            56788999999999999999999975 4 5999999999999999888777544321111  0 11233332 3447777


Q ss_pred             H-HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCC
Q 028439           81 G-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTS  159 (209)
Q Consensus        81 g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~  159 (209)
                      + ..++.++++|++++++++++++.++.|+++.+++++++|||++++      +++|++++++|+.++....+       
T Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~~-------  148 (296)
T PRK15430         82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTFG-------  148 (296)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHcC-------
Confidence            7 899999999999999999999999999999999999999999765      59999999999988763211       


Q ss_pred             CCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028439          160 LPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFL  200 (209)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~  200 (209)
                                  +.     ..+.++++++||+|++..|+..
T Consensus       149 ------------~~-----~~~~l~aa~~~a~~~i~~r~~~  172 (296)
T PRK15430        149 ------------SL-----PIIALGLAFSFAFYGLVRKKIA  172 (296)
T ss_pred             ------------Cc-----cHHHHHHHHHHHHHHHHHHhcC
Confidence                        11     1357889999999999988864

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.83  E-value=5.6e-19  Score=149.34  Aligned_cols=169  Identities=11%  Similarity=0.032  Sum_probs=134.1

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHH
Q 028439            3 KVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGT   82 (209)
Q Consensus         3 ~~~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~   82 (209)
                      ..+.+++..++++.++|+.++.++|.+.++ +||..+.++|+.+|+++++++..  ++++  +.++|++......|++..
T Consensus         8 ~~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~--~~~~--~~~~~~~~~~~~~g~~~~   82 (293)
T PRK10532          8 LPVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFK--PWRL--RFAKEQRLPLLFYGVSLG   82 (293)
T ss_pred             cccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHh--HHhc--cCCHHHHHHHHHHHHHHH
Confidence            345788999999999999999999999875 99999999999999999887642  1221  345678888888888776


Q ss_pred             HHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCC
Q 028439           83 SSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPP  162 (209)
Q Consensus        83 ~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~  162 (209)
                      ..+.++++++++++++.++++.++.|+++.+++    +|+.+        +..++.++++|+.++.. .+.+        
T Consensus        83 ~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~~-~~~~--------  141 (293)
T PRK10532         83 GMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLLP-LGQD--------  141 (293)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheeee-cCCC--------
Confidence            667889999999999999999999999998876    24321        35667889999988652 1110        


Q ss_pred             CCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028439          163 NSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSKS  205 (209)
Q Consensus       163 ~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~~  205 (209)
                             .. .....|+++.++++++||+|++..||..+++++
T Consensus       142 -------~~-~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~  176 (293)
T PRK10532        142 -------VS-HVDLTGAALALGAGACWAIYILSGQRAGAEHGP  176 (293)
T ss_pred             -------cc-cCChHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence                   11 112479999999999999999999999877764

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.83  E-value=1.9e-18  Score=146.54  Aligned_cols=156  Identities=10%  Similarity=0.043  Sum_probs=127.0

Q ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Q 028439           23 MFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTA  102 (209)
Q Consensus        23 ~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~asi  102 (209)
                      .+.-|.++++--+|..+++.|+.++++.+.+. +....+++++.+++++++++..|+++..++.+.++|++|++++++++
T Consensus        18 ~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~l   96 (302)
T TIGR00817        18 NIYNKKLLNVFPYPYFKTLISLAVGSLYCLLS-WSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHT   96 (302)
T ss_pred             HHHHHHHHhhCChhHHHHHHHHHHHHHHHHHH-HHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            34678888754789999999999998776554 21122223456788999999999999788899999999999999999


Q ss_pred             hhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCchHHHHHHHH
Q 028439          103 LLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLL  182 (209)
Q Consensus       103 i~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~  182 (209)
                      +.++.|+++++++++++|||++++      +++|++++++|+.+..  .+                 .. +....|+++.
T Consensus        97 i~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~--~~-----------------~~-~~~~~G~~~~  150 (302)
T TIGR00817        97 IKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS--DT-----------------EL-SFNWAGFLSA  150 (302)
T ss_pred             HHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc--CC-----------------cc-cccHHHHHHH
Confidence            999999999999999999999765      5899999999997643  11                 01 1124799999


Q ss_pred             HHHHHHHHHHHHHHHHHHh--hcCC
Q 028439          183 AVDCVFTSAWFIVQVRFLR--NSKS  205 (209)
Q Consensus       183 l~aa~~~a~y~vl~k~~~~--~~~~  205 (209)
                      ++|+++|++|.+..||..+  ++++
T Consensus       151 l~a~~~~a~~~v~~k~~~~~~~~~~  175 (302)
T TIGR00817       151 MISNITFVSRNIFSKKAMTIKSLDK  175 (302)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCCc
Confidence            9999999999999999887  6654

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.77  E-value=6.3e-17  Score=140.13  Aligned_cols=156  Identities=15%  Similarity=0.094  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHHH-HHHHHHHHHHhhcc
Q 028439           20 VGLMFAGKAAMSDGMS-NLVFVFYSKAFASLVLLPASLLFHRSQIPPL--TLPILSAFFLLGFLG-TSSQFFGYAGIYYS   95 (209)
Q Consensus        20 g~~~i~~k~~~~~~~~-p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~--~~~~~~~~~~lg~~g-~~~~~~~~~gl~~t   95 (209)
                      ....+..|.+++. +| |+++..+|+++++++...+.. ...+++++.  .+++++.++.+|+++ .. +...+.|++++
T Consensus        62 ~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~llp~gl~~~~~-~~~~~~sl~~~  138 (350)
T PTZ00343         62 VLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWA-TGFRKIPRIKSLKLFLKNFLPQGLCHLFV-HFGAVISMGLG  138 (350)
T ss_pred             HHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhc
Confidence            3345568888875 99 999999999999887654422 222222334  245788999999999 65 44467999999


Q ss_pred             chhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCchH
Q 028439           96 SPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNW  175 (209)
Q Consensus        96 ~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  175 (209)
                      +++.+.++.++.|++++++++++++||++++      +++|++++++|+.+.+.  ++                 . +..
T Consensus       139 svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~--~~-----------------~-~~~  192 (350)
T PTZ00343        139 AVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV--KE-----------------L-HFT  192 (350)
T ss_pred             cHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec--cc-----------------c-hhH
Confidence            9999999999999999999999999999765      69999999999988652  10                 1 113


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 028439          176 VFGGLLLAVDCVFTSAWFIVQVRFLRNSK  204 (209)
Q Consensus       176 ~~G~~l~l~aa~~~a~y~vl~k~~~~~~~  204 (209)
                      ..|+++.++|+++|+.|+++.|+..++++
T Consensus       193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~  221 (350)
T PTZ00343        193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKS  221 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            57999999999999999999999987764

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.75  E-value=9.4e-17  Score=134.90  Aligned_cols=168  Identities=12%  Similarity=0.075  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 028439            9 VIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFH-RSQIPPLTLPILSAFFLLGFLG-TSSQF   86 (209)
Q Consensus         9 ~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~-r~~~~~~~~~~~~~~~~lg~~g-~~~~~   86 (209)
                      ....+.++++|+...+..|...++ -++  ..++++..+++++.|+...+. ++.++..+ +++......+.++ ..++.
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   78 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLP-ATFWLLLAISAVANMVYFL   78 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcc-hhhHHHHHHHHHHHHHHHH
Confidence            356678899999999999976554 344  357777888888888765432 22223233 3444556666666 99999


Q ss_pred             HHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCc
Q 028439           87 FGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSL  166 (209)
Q Consensus        87 ~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~  166 (209)
                      +++.|++++++++++.+.++.|+++.+++++++|||++++      +++|+.+++.|++++... +.             
T Consensus        79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~~-~~-------------  138 (281)
T TIGR03340        79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGLS-RF-------------  138 (281)
T ss_pred             HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhcc-cc-------------
Confidence            9999999999999999999999999999999999999865      599999999999887621 10             


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028439          167 QVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSKS  205 (209)
Q Consensus       167 ~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~~  205 (209)
                          ... ...|+.+.++++++|++|+++.|+..++.++
T Consensus       139 ----~~~-~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~  172 (281)
T TIGR03340       139 ----AQH-RRKAYAWALAAALGTAIYSLSDKAAALGVPA  172 (281)
T ss_pred             ----ccc-chhHHHHHHHHHHHHHHhhhhccccccchhc
Confidence                011 1358888999999999999998886555543

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.69  E-value=2.9e-16  Score=115.10  Aligned_cols=124  Identities=24%  Similarity=0.408  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhcc
Q 028439           17 CAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TSSQFFGYAGIYYS   95 (209)
Q Consensus        17 ~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g-~~~~~~~~~gl~~t   95 (209)
                      ++||.+.+..|...++ +||....++|+..+++ ++++....++++....+.+++......|+++ ...+.+++.|++++
T Consensus         1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   78 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI   78 (126)
T ss_pred             ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence            4799999999998875 9999999999999997 6666555544433456677888899999998 99999999999999


Q ss_pred             chhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439           96 SPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (209)
Q Consensus        96 ~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~  148 (209)
                      +++.++.+.++.|+++.++++++++|+++++      +++|+++.+.|+++++
T Consensus        79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   79 SASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS  125 (126)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998765      6999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.69  E-value=6.8e-15  Score=122.35  Aligned_cols=174  Identities=21%  Similarity=0.280  Sum_probs=134.8

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH
Q 028439            1 MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFL   80 (209)
Q Consensus         1 ~~~~~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~   80 (209)
                      |+++........+...+.|+.+....|...+...++....+.|+..+.+...+.... ++....+ ..+++....+.+.+
T Consensus         1 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~   78 (292)
T COG0697           1 MKRALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPRGLRP-ALRPWLLLLLLALL   78 (292)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hcccccc-cccchHHHHHHHHH
Confidence            345566777888888899999999999987644677777777999998884444221 1111111 12224467777777


Q ss_pred             H-HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHH-HHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccC
Q 028439           81 G-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAI-IFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMT  158 (209)
Q Consensus        81 g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~-~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~  158 (209)
                      + ..++.+++.++++++++.++.+.++.|+++.+++. ++++||++++      ++.|+.+++.|++++...++      
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~------  146 (292)
T COG0697          79 GLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGG------  146 (292)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCC------
Confidence            8 99999999999999999999999999999999997 6679999765      58999999999998863211      


Q ss_pred             CCCCCCCcccCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028439          159 SLPPNSSLQVFMPQTN-WVFGGLLLAVDCVFTSAWFIVQVRFL  200 (209)
Q Consensus       159 ~~~~~~~~~~~~~~~~-~~~G~~l~l~aa~~~a~y~vl~k~~~  200 (209)
                                  .+.+ ...|+.+.++++++|++|.+..|+..
T Consensus       147 ------------~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~  177 (292)
T COG0697         147 ------------GGGILSLLGLLLALAAALLWALYTALVKRLS  177 (292)
T ss_pred             ------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                        1111 46899999999999999999999877

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.63  E-value=2e-14  Score=123.12  Aligned_cols=172  Identities=16%  Similarity=0.217  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028439           17 CAHVGLMFAGKAAMSDGMS-NLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLPILSAFFLLGFLGTSSQFFGYAGIYY   94 (209)
Q Consensus        17 ~~wg~~~i~~k~~~~~~~~-p~~l~~~R~~~a~l~l~~~~~~~~r~~-~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~   94 (209)
                      ++=.++.+.+...-+.+.+ |..-.++-+..-.++..+...++++++ ..+..+++|.+.+++|++-...+++...|++|
T Consensus        23 l~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~y  102 (334)
T PF06027_consen   23 LCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQY  102 (334)
T ss_pred             HHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3444555555554444554 666667776666666666554433221 12223456777788888778889999999999


Q ss_pred             cchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCch
Q 028439           95 SSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTN  174 (209)
Q Consensus        95 t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~  174 (209)
                      |+.+.+.++..+.-+++++++++++|||.++.      |++|++++++|+.+++..+....+           .+.++++
T Consensus       103 TsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~~~-----------~~~~~~~  165 (334)
T PF06027_consen  103 TSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLSGS-----------DSSSGSN  165 (334)
T ss_pred             ccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeecccccc-----------cCCCCCc
Confidence            99999999999999999999999999998765      699999999999888754321100           1123455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028439          175 WVFGGLLLAVDCVFTSAWFIVQVRFLRNSKS  205 (209)
Q Consensus       175 ~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~~  205 (209)
                      ..+||++++.+++.||+|.+++++..+++|.
T Consensus       166 ~i~GDll~l~~a~lya~~nV~~E~~v~~~~~  196 (334)
T PF06027_consen  166 PILGDLLALLGAILYAVSNVLEEKLVKKAPR  196 (334)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence            6899999999999999999999999888763

Some of the sequences in this family are annotated as putative membrane proteins.

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.55  E-value=4.4e-14  Score=103.32  Aligned_cols=134  Identities=15%  Similarity=0.161  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHHHHHHHH
Q 028439            8 PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIP-PLTLPILSAFFLLGFLGTSSQF   86 (209)
Q Consensus         8 ~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~-~~~~~~~~~~~~lg~~g~~~~~   86 (209)
                      .....++++++||...++.|++++ ++||..-++.|-....+++..+.+..++.+.+ ..+.|.|..+.+-|+.+.+.-.
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl   82 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL   82 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence            456778899999999999999986 69999999999999888888776654443321 2467888888888876699999


Q ss_pred             HHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439           87 FGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (209)
Q Consensus        87 ~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~  148 (209)
                      +||.++|.-+++...-+-.+.|+++.++++++++||+|.++      ++|+++..+|++++.
T Consensus        83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~------~iG~~LI~~Gailvs  138 (140)
T COG2510          83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPT------WIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHH------HHHHHHHHhCeeeEe
Confidence            99999999999999999999999999999999999998764      899999999997754

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.47  E-value=2.7e-12  Score=106.04  Aligned_cols=131  Identities=18%  Similarity=0.219  Sum_probs=110.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-
Q 028439            5 GLAPVIGMMMAECAHVGLMFAGKAAMSDGMSN--LVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-   81 (209)
Q Consensus         5 ~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p--~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g-   81 (209)
                      ..++....++++++|+.+.+..|...+ +.+|  ..+..+|+.++.+++.++.+..++  .+..+.+++..+..+|+++ 
T Consensus       126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  202 (260)
T TIGR00950       126 NPAGLLLGLGSGISFALGTVLYKRLVK-KEGPELLQFTGWVLLLGALLLLPFAWFLGP--NPQALSLQWGALLYLGLIGT  202 (260)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhHHhh-cCCchHHHHHHHHHHHHHHHHHHHHHhcCC--CCCcchHHHHHHHHHHHHHH
Confidence            456888999999999999999999875 3664  455557899999999888765332  2233567788889999999 


Q ss_pred             HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHH
Q 028439           82 TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGA  144 (209)
Q Consensus        82 ~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv  144 (209)
                      ...+.++++++++.+++.++.+.++.|+++.++++++++|+++.+      +++|..+.+.|+
T Consensus       203 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~  259 (260)
T TIGR00950       203 ALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence            899999999999999999999999999999999999999999865      589999999886

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.45  E-value=5.3e-12  Score=106.74  Aligned_cols=171  Identities=15%  Similarity=0.129  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028439            9 VIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFG   88 (209)
Q Consensus         9 ~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~~   88 (209)
                      ++..++++++||.+++..|...  +.++.++.  |..++++++..+.... |+.+ +..++.+..-++.|++-...|.++
T Consensus         3 ~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~-~~~~-~~~~~~~~~g~l~G~~w~ig~~~~   76 (290)
T TIGR00776         3 ILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIF-VLPE-FWALSIFLVGLLSGAFWALGQINQ   76 (290)
T ss_pred             hHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHH-hCCc-ccccHHHHHHHHHHHHHHhhhhhH
Confidence            5778889999999999999853  68887775  8888888776655443 2211 111233333333333337788999


Q ss_pred             HHHhhccchhHHHHhhc-chHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcc
Q 028439           89 YAGIYYSSPTLSTALLN-LVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQ  167 (209)
Q Consensus        89 ~~gl~~t~a~~asii~~-~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~  167 (209)
                      +.++++++.+.+-.+.+ +.|++..+.+.+++||+.++++  ....++|+++++.|++++...+++..            
T Consensus        77 ~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~--~~~~~~g~~l~l~G~~l~~~~~~~~~------------  142 (290)
T TIGR00776        77 FKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQ--TLLGLLALILIIIGVYLTSRSKDKSA------------  142 (290)
T ss_pred             HHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHhHheEEecccccc------------
Confidence            99999999999988888 8889999999999999986542  12228899999999988753221100            


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028439          168 VFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRF  199 (209)
Q Consensus       168 ~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~  199 (209)
                      ...+..+...|.++.++|+++|+.|.+..|..
T Consensus       143 ~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~  174 (290)
T TIGR00776       143 GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF  174 (290)
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            00000223579999999999999999999975

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.41  E-value=1.2e-12  Score=95.69  Aligned_cols=103  Identities=23%  Similarity=0.374  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHH
Q 028439           41 FYSKAFASLVLLPASLLFHRSQI--PPLTLPILSAFFLLGFLG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAII  117 (209)
Q Consensus        41 ~~R~~~a~l~l~~~~~~~~r~~~--~~~~~~~~~~~~~lg~~g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~  117 (209)
                      .+|+..+.+++..+...++|.+.  +..++|++......|+++ ..++.++++|+++++ +.++.+.++.|+++.+++.+
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            68999999998887766432211  123345566777888888 799999999999999 48889999999999999999


Q ss_pred             HhhccCCcccccchhhHHHHHHHHHHHHHHHHh
Q 028439          118 FRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYY  150 (209)
Q Consensus       118 ~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~  150 (209)
                      ++|||++++      ++.|++++++|++++...
T Consensus        81 ~~~er~~~~------~~~a~~l~~~Gv~li~~~  107 (113)
T PF13536_consen   81 FFKERLSPR------RWLAILLILIGVILIAWS  107 (113)
T ss_pred             HhcCCCCHH------HHHHHHHHHHHHHHHhhh
Confidence            999999865      599999999999998743

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.37  E-value=7.2e-11  Score=97.83  Aligned_cols=167  Identities=12%  Similarity=0.054  Sum_probs=131.8

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCCCHHHHHHHHHH
Q 028439            1 MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQI---PPLTLPILSAFFLL   77 (209)
Q Consensus         1 ~~~~~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~---~~~~~~~~~~~~~l   77 (209)
                      |++...|+++..+.+.++||..+...|.. + .+|+.++...|..-+..+++.+....++.+.   ...++|.+..+.+.
T Consensus         1 ~~~~~~~Gil~~l~Ay~lwG~lp~y~kll-~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~   78 (293)
T COG2962           1 MAKDSRKGILLALLAYLLWGLLPLYFKLL-E-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALT   78 (293)
T ss_pred             CCCcccchhHHHHHHHHHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHH
Confidence            56566789999999999999999999975 4 5999999999999888777665544332221   11234566667777


Q ss_pred             HHHHHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCcccc
Q 028439           78 GFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLM  157 (209)
Q Consensus        78 g~~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~  157 (209)
                      +.+...+-..|.++.+.-.+-++|+=-+..|++..+++.+++|||+++      .|++++.++.+||....+..|     
T Consensus        79 a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~------~Q~iAV~lA~~GV~~~~~~~g-----  147 (293)
T COG2962          79 ALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSR------LQWIAVGLAAAGVLIQTWLLG-----  147 (293)
T ss_pred             HHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccH------HHHHHHHHHHHHHHHHHHHcC-----
Confidence            776699999999999999999999999999999999999999999975      469999999999988775433     


Q ss_pred             CCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028439          158 TSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRF  199 (209)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~  199 (209)
                                    +..| .    .+.=+++|+.|-.+-|++
T Consensus       148 --------------~lpw-v----al~la~sf~~Ygl~RK~~  170 (293)
T COG2962         148 --------------SLPW-V----ALALALSFGLYGLLRKKL  170 (293)
T ss_pred             --------------CCcH-H----HHHHHHHHHHHHHHHHhc
Confidence                          1223 2    256688999999886654

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.29  E-value=2.2e-10  Score=96.84  Aligned_cols=136  Identities=18%  Similarity=0.018  Sum_probs=112.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHH
Q 028439            6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TSS   84 (209)
Q Consensus         6 ~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g-~~~   84 (209)
                      ..+.+..++++++|+...+..|... . -++....++++.++++++.++....+.......+.++|..+..+|+++ ...
T Consensus       149 ~~G~l~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~  226 (292)
T PRK11272        149 PWGAILILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIA  226 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence            4578888999999999999999853 2 345667788999998888887654322111113457788899999999 999


Q ss_pred             HHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHH
Q 028439           85 QFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY  149 (209)
Q Consensus        85 ~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~  149 (209)
                      +.++++++++.++++++.+.++.|++.+++++++++|+++..      +++|.++.+.|+++...
T Consensus       227 ~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        227 ISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVTL  285 (292)
T ss_pred             HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999865      59999999999988753

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.28  E-value=3.4e-10  Score=95.75  Aligned_cols=134  Identities=14%  Similarity=0.116  Sum_probs=108.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHH
Q 028439            6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TSS   84 (209)
Q Consensus         6 ~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g-~~~   84 (209)
                      ..+.+..+.++++|+.+.+..|...+ +.+|...... ..++++++.|+......  ....+...+..++.+|+++ .+.
T Consensus       147 ~~G~ll~l~aa~~~a~~~v~~r~~~~-~~~~~~~~~~-~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~~  222 (293)
T PRK10532        147 LTGAALALGAGACWAIYILSGQRAGA-EHGPATVAIG-SLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTALP  222 (293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHH-HHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHHH
Confidence            34778899999999999999998754 5888877544 45666777776654321  1123445565677899999 999


Q ss_pred             HHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHH
Q 028439           85 QFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY  149 (209)
Q Consensus        85 ~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~  149 (209)
                      +.++++++++.+|+.++.+.++.|++..++++++++|+++..      +++|..+.+.|++....
T Consensus       223 ~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~  281 (293)
T PRK10532        223 YSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTL  281 (293)
T ss_pred             HHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999865      59999999999988754

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.27  E-value=3.5e-10  Score=92.02  Aligned_cols=163  Identities=15%  Similarity=0.083  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028439            8 PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFF   87 (209)
Q Consensus         8 ~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~   87 (209)
                      +++.++.+.+.--...-+.|..+.. +.|.-.+.+|..+++++++++.  +.++  ++.+++++..+...|..-...|.+
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~--RPwr--~r~~~~~~~~~~~yGvsLg~MNl~   87 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALF--RPWR--RRLSKPQRLALLAYGVSLGGMNLL   87 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHh--hHHH--hccChhhhHHHHHHHHHHHHHHHH
Confidence            4666666665544455566777774 9999999999999999998773  2222  346778899999999877777888


Q ss_pred             HHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcc
Q 028439           88 GYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQ  167 (209)
Q Consensus        88 ~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~  167 (209)
                      ||.+++..+-+.+..+.++-|+.+.+++.    +|        ..+.+.+.+++.|..++.- .+++             
T Consensus        88 FY~si~riPlGiAVAiEF~GPL~vA~~~s----Rr--------~~d~vwvaLAvlGi~lL~p-~~~~-------------  141 (292)
T COG5006          88 FYLSIERIPLGIAVAIEFTGPLAVALLSS----RR--------LRDFVWVALAVLGIWLLLP-LGQS-------------  141 (292)
T ss_pred             HHHHHHhccchhhhhhhhccHHHHHHHhc----cc--------hhhHHHHHHHHHHHHhhee-ccCC-------------
Confidence            89999999999999999999999887641    11        2456778899999988752 2211             


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 028439          168 VFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSK  204 (209)
Q Consensus       168 ~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~  204 (209)
                        ..+. +..|..+.+.+..||+.|++..||.-+.-|
T Consensus       142 --~~~l-Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~  175 (292)
T COG5006         142 --VWSL-DPVGVALALGAGACWALYIVLGQRAGRAEH  175 (292)
T ss_pred             --cCcC-CHHHHHHHHHHhHHHHHHHHHcchhcccCC
Confidence              1122 358999999999999999999998765443

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.17  E-value=2.4e-09  Score=93.14  Aligned_cols=136  Identities=12%  Similarity=0.108  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHhhcCCC----CCCCHHHHHHHHHHHHHHH
Q 028439            8 PVIGMMMAECAHVGLMFAGKAAMSDGMSN-LVFVFYSKAFASLVLLPASLLFHRSQI----PPLTLPILSAFFLLGFLGT   82 (209)
Q Consensus         8 ~~l~ll~~~~~wg~~~i~~k~~~~~~~~p-~~l~~~R~~~a~l~l~~~~~~~~r~~~----~~~~~~~~~~~~~lg~~g~   82 (209)
                      +.+.++.++++|+.+.+..|..... .|| ...+++...++++.+.++....++...    ...+.. ...++..|+...
T Consensus       190 G~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~t~  267 (358)
T PLN00411        190 GGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAIITS  267 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHHHH
Confidence            4567888899999999999987664 544 466777777777776666555443211    111222 223444554346


Q ss_pred             HHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhc
Q 028439           83 SSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYK  151 (209)
Q Consensus        83 ~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~  151 (209)
                      +.+.++++++++.+|+.+++..++.|+++.++++++++|++++.      +++|.++.+.|++++...+
T Consensus       268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~~~  330 (358)
T PLN00411        268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMWGK  330 (358)
T ss_pred             HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhhh
Confidence            67889999999999999999999999999999999999999876      4899999999999887543

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.15  E-value=2.4e-09  Score=90.66  Aligned_cols=132  Identities=13%  Similarity=0.097  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028439            7 APVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQF   86 (209)
Q Consensus         7 ~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~   86 (209)
                      .+.+..+.++++|+.+.+..|... ++.+|....   +..+++.+.+.... ........+...+..+...|+...+.+.
T Consensus       156 ~G~~~~l~aa~~~A~~~v~~k~~~-~~~~~~~~~---~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~~~t~~~~~  230 (295)
T PRK11689        156 LSYGLAFIGAFIWAAYCNVTRKYA-RGKNGITLF---FILTALALWIKYFL-SPQPAMVFSLPAIIKLLLAAAAMGFGYA  230 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc-CCCCchhHH---HHHHHHHHHHHHHH-hcCccccCCHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999999964 457887653   23344444443332 2211123455677777777743388999


Q ss_pred             HHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHH
Q 028439           87 FGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY  149 (209)
Q Consensus        87 ~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~  149 (209)
                      ++++++++.+|+.++.+.++.|++..++++++++|+++..      +++|.++.+.|+++...
T Consensus       231 l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        231 AWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHhh
Confidence            9999999999999999999999999999999999999875      59999999999977653

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.13  E-value=1.8e-10  Score=98.29  Aligned_cols=108  Identities=22%  Similarity=0.296  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccC
Q 028439           79 FLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMT  158 (209)
Q Consensus        79 ~~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~  158 (209)
                      .+-.+.+++++.++.+|+++..+++.++.-+||..++.++..||+|+.      |.+++.+++.|+++++..+..+    
T Consensus       167 ~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~~----  236 (416)
T KOG2765|consen  167 PLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSKQ----  236 (416)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEeccccc----
Confidence            333889999999999999999999999999999999999999999865      7999999999998876432211    


Q ss_pred             CCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 028439          159 SLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSK  204 (209)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~  204 (209)
                              .++..+++...|+++.+++|+.||+|+++-||-..+.+
T Consensus       237 --------~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg  274 (416)
T KOG2765|consen  237 --------NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEG  274 (416)
T ss_pred             --------cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence                    01233455679999999999999999999998877664

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.11  E-value=1.4e-08  Score=86.25  Aligned_cols=166  Identities=16%  Similarity=0.145  Sum_probs=121.9

Q ss_pred             HHHHHHHHHh-CCCC--hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 028439           22 LMFAGKAAMS-DGMS--NLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPT   98 (209)
Q Consensus        22 ~~i~~k~~~~-~~~~--p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~   98 (209)
                      +.+..+.... ..-.  |..+++.++....+.-.+.....+++   +.+++.+...+..+++..+...+.+.+++|.|..
T Consensus        15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p   91 (303)
T PF08449_consen   15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP---KSRKIPLKKYAILSFLFFLASVLSNAALKYISYP   91 (303)
T ss_pred             HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc---CCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChH
Confidence            3445444443 3344  88999999999887766554332211   2233445567778877788889999999999999


Q ss_pred             HHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCchHHHH
Q 028439           99 LSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFG  178 (209)
Q Consensus        99 ~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G  178 (209)
                      .-.++-...|+.+++++.+++++|.+++      |++++++..+|+++....+......          ......++..|
T Consensus        92 ~~~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~~----------~~~~~~~~~~G  155 (303)
T PF08449_consen   92 TQIVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSSS----------SNSSSFSSALG  155 (303)
T ss_pred             HHHHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeecccccccc----------cccccccchhH
Confidence            9999999999999999999999998755      6999999999998876443221100          01111223459


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 028439          179 GLLLAVDCVFTSAWFIVQVRFLRNSKSE  206 (209)
Q Consensus       179 ~~l~l~aa~~~a~y~vl~k~~~~~~~~~  206 (209)
                      +++++++.++-+.+.+.++|..++|+.+
T Consensus       156 ~~ll~~sl~~~a~~~~~qe~~~~~~~~~  183 (303)
T PF08449_consen  156 IILLLLSLLLDAFTGVYQEKLFKKYGKS  183 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999999999999999999988754

; GO: 0055085 transmembrane transport

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.07  E-value=1.2e-08  Score=86.57  Aligned_cols=136  Identities=16%  Similarity=0.163  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCHHHHHHHHHHHH
Q 028439            7 APVIGMMMAECAHVGLMFAGKAAMSDG--MSNLVFVFYSKAFASLVLLPASLLFHRSQ-----IPPLTLPILSAFFLLGF   79 (209)
Q Consensus         7 ~~~l~ll~~~~~wg~~~i~~k~~~~~~--~~p~~l~~~R~~~a~l~l~~~~~~~~r~~-----~~~~~~~~~~~~~~lg~   79 (209)
                      .+.+..+.+.++|+.+.+..|...+..  .+......+-..++.+.+....+..+...     ....+...+..++.+|+
T Consensus       143 ~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i  222 (299)
T PRK11453        143 LGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAF  222 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHH
Confidence            577888999999999999999864431  12233334444444443333333222211     11345677889999999


Q ss_pred             HH-HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439           80 LG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (209)
Q Consensus        80 ~g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~  148 (209)
                      ++ ...+.+++.++++.++++++.+..+.|++..++++++++|+++..      +++|.++.++|+.+..
T Consensus       223 ~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        223 VATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence            99 999999999999999999999999999999999999999999865      5999999999998765

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.04  E-value=2.7e-11  Score=99.14  Aligned_cols=176  Identities=15%  Similarity=0.230  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 028439           17 CAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSS   96 (209)
Q Consensus        17 ~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~   96 (209)
                      ..+....++.+..+  +.+|.+....|++.-.++..|..+.....-+-+...|  +++++-|+.|+...++.|++++|.+
T Consensus        47 ~ff~~~~vv~t~~~--e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R--~~LiLRg~mG~tgvmlmyya~~~ms  122 (346)
T KOG4510|consen   47 YFFNSCMVVSTKVL--ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKR--KWLILRGFMGFTGVMLMYYALMYMS  122 (346)
T ss_pred             HHHhhHHHhhhhhh--ccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcE--EEEEeehhhhhhHHHHHHHHHhhcc
Confidence            66666666666654  3899999999977666665554333211111111122  2467778888445556678999999


Q ss_pred             hhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCchHH
Q 028439           97 PTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWV  176 (209)
Q Consensus        97 a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  176 (209)
                      -+.|++|....|++|.+++++++||+.++      .+.+|..+.+.|+++++.   |.....++. +.++.+  ..+...
T Consensus       123 laDA~vItFssPvft~ifaw~~LkE~~t~------~eaL~s~itl~GVVLIvR---PpFlFG~~t-~g~~~s--~~~~~~  190 (346)
T KOG4510|consen  123 LADAVVITFSSPVFTIIFAWAFLKEPFTK------FEALGSLITLLGVVLIVR---PPFLFGDTT-EGEDSS--QVEYDI  190 (346)
T ss_pred             hhheEEEEecChHHHHHHHHHHHcCCCcH------HHHHHHHHhhheEEEEec---CCcccCCCc-cccccc--cccccC
Confidence            99999999999999999999999999875      468999999999998872   322221110 001101  112335


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 028439          177 FGGLLLAVDCVFTSAWFIVQVRFLRNSKSENQ  208 (209)
Q Consensus       177 ~G~~l~l~aa~~~a~y~vl~k~~~~~~~~~~~  208 (209)
                      .|.+..+.+++.-|.-.++-|++=++.+..+|
T Consensus       191 ~gt~aai~s~lf~asvyIilR~iGk~~h~~ms  222 (346)
T KOG4510|consen  191 PGTVAAISSVLFGASVYIILRYIGKNAHAIMS  222 (346)
T ss_pred             CchHHHHHhHhhhhhHHHHHHHhhccccEEEE
Confidence            67888888888887777777777666655443

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.03  E-value=3.2e-09  Score=90.00  Aligned_cols=138  Identities=15%  Similarity=0.181  Sum_probs=105.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---------CCHHH-HHHH
Q 028439            6 LAPVIGMMMAECAHVGLMFAGKAAMSD-GMSNLVFVFYSKAFASLVLLPASLLFHRSQIPP---------LTLPI-LSAF   74 (209)
Q Consensus         6 ~~~~l~ll~~~~~wg~~~i~~k~~~~~-~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~---------~~~~~-~~~~   74 (209)
                      ..+.+..++++++|+...+..|...++ ++||..+..+....+++.++|+....+......         ..... +...
T Consensus       144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (302)
T TIGR00817       144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS  223 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence            447788899999999999999987641 599999999999999999999876543111000         00001 1112


Q ss_pred             HHHHHHH-HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHH
Q 028439           75 FLLGFLG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY  149 (209)
Q Consensus        75 ~~lg~~g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~  149 (209)
                      ...+... ..++.+++.++++++|+.+++..++.|++++++++++++|+++..      +++|..+.+.|+.+...
T Consensus       224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHH
Confidence            2333323 445577888999999999999999999999999999999999876      49999999999988764

specificities overlap.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.97  E-value=5.1e-09  Score=87.96  Aligned_cols=133  Identities=16%  Similarity=0.056  Sum_probs=92.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 028439            6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLV----FVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG   81 (209)
Q Consensus         6 ~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~----l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g   81 (209)
                      .++....+.++++|+.+.+..|...+ +.+|..    ...+.+.+.++.+.++....++ .....+...+..+...+.+.
T Consensus       143 ~~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  220 (281)
T TIGR03340       143 RKAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHG-RSMFPYARQILPSATLGGLM  220 (281)
T ss_pred             hhHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHHhc-cchhhhHHHHHHHHHHHHHH
Confidence            34566778889999999999987532 355432    2233333332222222211111 11111223344556777777


Q ss_pred             -HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHH
Q 028439           82 -TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI  146 (209)
Q Consensus        82 -~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l  146 (209)
                       .+.+.++++++++.+++.++.+.++.|++..++++++++|+++..      +++|..+.+.|+.+
T Consensus       221 s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l  280 (281)
T TIGR03340       221 IGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence             889999999999999999999999999999999999999999865      59999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.88  E-value=1.3e-07  Score=71.86  Aligned_cols=132  Identities=17%  Similarity=0.274  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC----CC-------CHHHH
Q 028439            9 VIGMMMAECAHVGLMFAGKAAMSD------GMSNLVFVFYSKAFASLVLLPASLLFHRSQIP----PL-------TLPIL   71 (209)
Q Consensus         9 ~l~ll~~~~~wg~~~i~~k~~~~~------~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~----~~-------~~~~~   71 (209)
                      ++..+.+.++-+...+..|..++.      ..+|.++..+--..+.++++|..+..++.+..    ..       +.+.+
T Consensus         2 ~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T PF03151_consen    2 FILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFI   81 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHH
Confidence            466788899999999999998865      68999999999999999999988776543310    00       12334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHH
Q 028439           72 SAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI  146 (209)
Q Consensus        72 ~~~~~lg~~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l  146 (209)
                      ..+...|+++...+...+.-+++++|...++..+.-.+++.++++++++|+++.+      ++.|+++++.|+++
T Consensus        82 ~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   82 FLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence            4555566666899999999999999999999999999999999999999999865      59999999999864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.85  E-value=2.2e-07  Score=80.62  Aligned_cols=137  Identities=15%  Similarity=0.104  Sum_probs=101.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhcCCC-----------CCCCH
Q 028439            6 LAPVIGMMMAECAHVGLMFAGKAAMSD------GMSNLVFVFYSKAFASLVLLPASLLFHRSQI-----------PPLTL   68 (209)
Q Consensus         6 ~~~~l~ll~~~~~wg~~~i~~k~~~~~------~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~-----------~~~~~   68 (209)
                      ..+.+..++++++|+...+..|..+++      .+++..+..+-..+++++++|+....+....           .....
T Consensus       193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~  272 (350)
T PTZ00343        193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK  272 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence            347788999999999999999998753      2667777777788999999998764432110           00011


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHH
Q 028439           69 PILSAFFLLGFLG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIM  147 (209)
Q Consensus        69 ~~~~~~~~lg~~g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~  147 (209)
                      .......+.+.+. .+++...+++++.++|..+++..++-|+++.++++++++|+++..      +++|.++++.|+++-
T Consensus       273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~lY  346 (350)
T PTZ00343        273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALLY  346 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHHH
Confidence            1111222333333 555666668999999999999999999999999999999999876      599999999999775


Q ss_pred             H
Q 028439          148 T  148 (209)
Q Consensus       148 ~  148 (209)
                      .
T Consensus       347 s  347 (350)
T PTZ00343        347 S  347 (350)
T ss_pred             h
Confidence            4

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.74  E-value=9.2e-07  Score=73.34  Aligned_cols=132  Identities=16%  Similarity=0.195  Sum_probs=103.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 028439            6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVF-YSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TS   83 (209)
Q Consensus         6 ~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~-~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g-~~   83 (209)
                      ..+.+..+.+.+.|+.+.+..|...  ..++..... +.+..+.....+.  ...... ...+.+++..+...|+++ ..
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~g~~~~~i  227 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLF--FLSGFG-APILSRAWLLLLYLGVFSTGL  227 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHH--Hhcccc-ccCCHHHHHHHHHHHHHHHHH
Confidence            3678889999999999999999765  477777776 4444222332222  111111 234567888899999999 78


Q ss_pred             HHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439           84 SQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (209)
Q Consensus        84 ~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~  148 (209)
                      .+.+++.+++..+++.++.+..+.|++..++++++++|+++.+      +++|..+.+.|+.+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~  286 (292)
T COG0697         228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999865      5899999999998765

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.72  E-value=3.5e-07  Score=77.37  Aligned_cols=133  Identities=19%  Similarity=0.154  Sum_probs=99.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH---HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHH
Q 028439            6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKA---FASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGT   82 (209)
Q Consensus         6 ~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~---~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~   82 (209)
                      .|+....+++.+.|+.+.+..|..   +.||.+..+....   +++.++.+..    ++.++. ..+......+.|++-.
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~Gi~~~  222 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH----ILAKPL-KKYAILLNILPGLMWG  222 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH----hcccch-HHHHHHHHHHHHHHHH
Confidence            678999999999999999999964   3899988555544   4444443331    111222 2333334455777667


Q ss_pred             HHHHHHHHHhh-ccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439           83 SSQFFGYAGIY-YSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (209)
Q Consensus        83 ~~~~~~~~gl~-~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~  148 (209)
                      ..+.+|+.|.+ +.+++.++++.+..|+...+.+++++||+.++++.  +.-++|.++.+.|+.+..
T Consensus       223 ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~--~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       223 IGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREM--IAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCccee--ehhHHHHHHHHHHHHHHh
Confidence            77888999999 99999999999999999999999999999988761  122289999999987764

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.71  E-value=7e-07  Score=75.64  Aligned_cols=131  Identities=14%  Similarity=0.069  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHHHHHHHHH
Q 028439           10 IGMMMAECAHVGLMFAGKAAMSDG-MSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLPILSAFFLLGFLGTSSQFF   87 (209)
Q Consensus        10 l~ll~~~~~wg~~~i~~k~~~~~~-~~p~~l~~~R~~~a~l~l~~~~~~~~r~~-~~~~~~~~~~~~~~lg~~g~~~~~~   87 (209)
                      +..+.++++|+.+.+..|...+++ .++.....+-..++...+.++.  ..... ....+...+..+...|+.....+.+
T Consensus       152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~  229 (296)
T PRK15430        152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA--DSSTSHMGQNPMSLNLLLIAAGIVTTVPLLC  229 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc--cCCcccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence            346677899999999998853221 2223333333333333322221  10000 0111122233444455544788999


Q ss_pred             HHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439           88 GYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (209)
Q Consensus        88 ~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~  148 (209)
                      +++++++.+|+.++.+.++.|++..++++++++|+++..      +++|..+.++|+.++.
T Consensus       230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~  284 (296)
T PRK15430        230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFV  284 (296)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999875      5899999988887765

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.70  E-value=5e-07  Score=74.69  Aligned_cols=130  Identities=12%  Similarity=0.122  Sum_probs=99.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHH
Q 028439           67 TLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI  146 (209)
Q Consensus        67 ~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l  146 (209)
                      ++|+..++.+=+++..+.+.+.+.++++.+|+.-.++..+-.++|++++++++|+|++.+      ||.++.+-+.|+.+
T Consensus        13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~l   86 (244)
T PF04142_consen   13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVL   86 (244)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHhe
Confidence            356777778888877888999999999999999999999999999999999999999876      48999999999988


Q ss_pred             HHHhcCCccccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028439          147 MTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSKS  205 (209)
Q Consensus       147 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~~  205 (209)
                      +...+....+..+. .+.+  .+....+...|.++.+.++++-++-.+..+|++|+.+.
T Consensus        87 v~~~~~~~~~~~~~-~~~~--~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~  142 (244)
T PF04142_consen   87 VQLSSSQSSDNSSS-SSVH--HDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNV  142 (244)
T ss_pred             eecCCccccccccc-cccc--cccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence            65322111000000 0000  01123446799999999999999999999999988763

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.62  E-value=7.2e-07  Score=64.95  Aligned_cols=68  Identities=15%  Similarity=0.113  Sum_probs=60.8

Q ss_pred             HHHHHHH-HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439           75 FLLGFLG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (209)
Q Consensus        75 ~~lg~~g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~  148 (209)
                      ...++.+ .+.++++..+++..|.+.|..+.++.|+++.++++++++||++++      |++|+.+.++|++++.
T Consensus        40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            3444577 889999999999999999999999999999999999999999876      5999999999998764

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.40  E-value=1e-05  Score=66.27  Aligned_cols=132  Identities=15%  Similarity=0.098  Sum_probs=105.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 028439            5 GLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TS   83 (209)
Q Consensus         5 ~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g-~~   83 (209)
                      +.-+..+.+.+..+|..+.+.+|.+-+ ..+--.=...-+.+|+++.+|+........  -.+.+....-+..|+++ .+
T Consensus       146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~ag~~--l~~p~ll~laLgvavlSSal  222 (292)
T COG5006         146 DPVGVALALGAGACWALYIVLGQRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQAGPA--LFSPSLLPLALGVAVLSSAL  222 (292)
T ss_pred             CHHHHHHHHHHhHHHHHHHHHcchhcc-cCCCchHHHHHHHHHHHHHhhhhhhhcchh--hcChHHHHHHHHHHHHhccc
Confidence            344567788899999999999998753 355566677889999999999976432111  23445555667788899 99


Q ss_pred             HHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHH
Q 028439           84 SQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAF  145 (209)
Q Consensus        84 ~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~  145 (209)
                      .+.+...+++..++..-+++.++.|.+..+.++++++|++|..|      |+|+...+++..
T Consensus       223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~q------wlaI~~ViaAsa  278 (292)
T COG5006         223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQ------WLAIAAVIAASA  278 (292)
T ss_pred             chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999998765      777777666553

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.39  E-value=0.00013  Score=62.51  Aligned_cols=183  Identities=11%  Similarity=0.086  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHHHhhcC---CC-CCC------CHHHHHH
Q 028439            7 APVIGMMMAECAHVGLMFAGKAAMSDG---MSNLVFVFYSKAFASLVLLPASLLFHRS---QI-PPL------TLPILSA   73 (209)
Q Consensus         7 ~~~l~ll~~~~~wg~~~i~~k~~~~~~---~~p~~l~~~R~~~a~l~l~~~~~~~~r~---~~-~~~------~~~~~~~   73 (209)
                      ..++.++...+-+++.....|..-..+   ..|.+..+.--.+-.++.....+...|+   +. +.+      .+++...
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            456777888899999999999986655   6777777777776666555554443221   11 111      2345555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCC
Q 028439           74 FFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGP  153 (209)
Q Consensus        74 ~~~lg~~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~  153 (209)
                      +.+=+++.++.+-+++.++.+.+|+.-.+...+--+-|+++..+++++|++++|      |..+.+.++|+.++.....+
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Q------w~Al~lL~~Gv~~vQ~~~~~  168 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQ------WMALVLLFAGVALVQLPSLS  168 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHH------HHHHHHHHHHHHHHhccCCC
Confidence            666666667777799999999999999999999999999999999999998765      89999999999887622111


Q ss_pred             ccccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 028439          154 HLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSK  204 (209)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~  204 (209)
                      ..   +.      .+.....+...|....+.+|++-++-.+.-.|++|+-+
T Consensus       169 ~~---~a------~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~  210 (345)
T KOG2234|consen  169 PT---GA------KSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSN  210 (345)
T ss_pred             CC---Cc------cCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            10   00      01223455679999999999999999999999887644

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.39  E-value=1.3e-05  Score=59.92  Aligned_cols=117  Identities=17%  Similarity=0.233  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHH
Q 028439            7 APVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TSSQ   85 (209)
Q Consensus         7 ~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g-~~~~   85 (209)
                      ++|+.++.+.++=+..-++.|.+.++ .+..+.... . ...+.       ...  .|       ...+.+|+.. .+.+
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~~~~~-------~~~--~p-------~~~i~lgl~~~~la~   62 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-IAALL-------AFG--LA-------LRAVLLGLAGYALSM   62 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-HHHHH-------HHh--cc-------HHHHHHHHHHHHHHH
Confidence            36777777777778888888988764 443332221 1 10000       000  00       1257888888 9999


Q ss_pred             HHHHHHhhccchhHHHHhhcchHHHHHHHHHH--HhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439           86 FFGYAGIYYSSPTLSTALLNLVPGFTFILAII--FRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (209)
Q Consensus        86 ~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~--~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~  148 (209)
                      .++..+++..+++.|.-+.+..|+++.+.++.  +++|+++++      |++|+.+.++|+.++.
T Consensus        63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence            99999999999999999999999989888885  799999876      5999999999999875

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.15  E-value=1e-05  Score=69.06  Aligned_cols=151  Identities=15%  Similarity=0.163  Sum_probs=115.0

Q ss_pred             HHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Q 028439           25 AGKAAMS--DGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTA  102 (209)
Q Consensus        25 ~~k~~~~--~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~asi  102 (209)
                      .-|..++  +.--|.++...++.++.+.+...-....++..+..++..+..++-+|++..+...+-+.++++.+.+..-.
T Consensus        35 ~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~  114 (316)
T KOG1441|consen   35 LNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQT  114 (316)
T ss_pred             eeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHH
Confidence            4677776  44578999999888888777655433222221111334577788888888888888899999999999999


Q ss_pred             hhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCchHHHHHHHH
Q 028439          103 LLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLL  182 (209)
Q Consensus       103 i~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~  182 (209)
                      +=+++|.++.++++++.+|+.+++.      +..++....|+.+....                    +.+-+..|.+..
T Consensus       115 iKa~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~ias~~--------------------e~~fn~~G~i~a  168 (316)
T KOG1441|consen  115 IKALMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAIASVT--------------------ELSFNLFGFISA  168 (316)
T ss_pred             HHhhcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEEeeec--------------------cccccHHHHHHH
Confidence            9999999999999999999998765      45666677777664321                    112236899999


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 028439          183 AVDCVFTSAWFIVQVRFLR  201 (209)
Q Consensus       183 l~aa~~~a~y~vl~k~~~~  201 (209)
                      +.+.++.+...+++|++++
T Consensus       169 ~~s~~~~al~~I~~~~ll~  187 (316)
T KOG1441|consen  169 MISNLAFALRNILSKKLLT  187 (316)
T ss_pred             HHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999885

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.00  E-value=1.1e-05  Score=64.01  Aligned_cols=96  Identities=18%  Similarity=0.254  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCC
Q 028439           82 TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLP  161 (209)
Q Consensus        82 ~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~  161 (209)
                      ++.++.|..+++..+|+.++.+....-.|+.+++++.+++|+..      .|++..++++.|++.+...+          
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~------~kIlaailAI~GiVmiay~D----------  127 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMG------FKILAAILAIGGIVMIAYAD----------  127 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhh------hhHHHHHHHhCcEEEEEecc----------
Confidence            67789999999999999999999999999999999999999875      46999999999998775321          


Q ss_pred             CCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028439          162 PNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLR  201 (209)
Q Consensus       162 ~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~  201 (209)
                              ....+.+.|..+.++++..-|+|-++-|+...
T Consensus       128 --------N~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iG  159 (290)
T KOG4314|consen  128 --------NEHADEIIGIACAVGSAFMAALYKVLFKMFIG  159 (290)
T ss_pred             --------chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence                    23355679999999999999999999888764

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.88  E-value=0.00033  Score=60.48  Aligned_cols=141  Identities=11%  Similarity=0.040  Sum_probs=100.9

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC--HHHHHHHHHHHHH
Q 028439            3 KVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLT--LPILSAFFLLGFL   80 (209)
Q Consensus         3 ~~~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~--~~~~~~~~~lg~~   80 (209)
                      .+..++.+.++.++.++|.+.+.-+...+ +.|+..+...=-+.+.++..+.....+|+.....+  .+....++..++.
T Consensus       164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~-~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~  242 (334)
T PF06027_consen  164 SNPILGDLLALLGAILYAVSNVLEEKLVK-KAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC  242 (334)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH
Confidence            35577889999999999999999998776 47887766555556666666665556665543332  3333322323332


Q ss_pred             HHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHh
Q 028439           81 GTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYY  150 (209)
Q Consensus        81 g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~  150 (209)
                      ....+.+.-..+++++|+...+=.-+...+.+++..+++||++++.      .++|.++.++|.++....
T Consensus       243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~~  306 (334)
T PF06027_consen  243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNLA  306 (334)
T ss_pred             HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEcc
Confidence            2555666778899999986666556778889999999999998764      589999999999876543

Some of the sequences in this family are annotated as putative membrane proteins.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.72  E-value=0.0016  Score=55.38  Aligned_cols=135  Identities=19%  Similarity=0.242  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC-C-----CCCHHHHHHHHHHHHH
Q 028439            8 PVIGMMMAECAHVGLMFAGKAAMS-DGMSNLVFVFYSKAFASLVLLPASLLFHRSQI-P-----PLTLPILSAFFLLGFL   80 (209)
Q Consensus         8 ~~l~ll~~~~~wg~~~i~~k~~~~-~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~-~-----~~~~~~~~~~~~lg~~   80 (209)
                      ++..++++.++-|...+..+..++ .+.+|.+..++-...+.+...+........+. .     ...++.+..+++.++.
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~  234 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT  234 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence            788899999999999999998874 57899999999999988887766554111110 0     0112345566677777


Q ss_pred             HHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439           81 GTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (209)
Q Consensus        81 g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~  148 (209)
                      +...+.+.+.-.+..+|...+++.++--+++++++..+++|++++.+      |.|+++.+.|..+=.
T Consensus       235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~------~~G~~lv~~g~~~~~  296 (303)
T PF08449_consen  235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQ------WIGIVLVFAGIFLYS  296 (303)
T ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHH------HHHHHHhHHHHHHHH
Confidence            76666777778999999999999999999999999999999998764      899999999997754

; GO: 0055085 transmembrane transport

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.72  E-value=0.0026  Score=55.12  Aligned_cols=181  Identities=12%  Similarity=0.061  Sum_probs=112.6

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHH--HHHHHHHHHHHHHHHHHHhhcC---CCCCCCHHHHHHHH
Q 028439            1 MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVF--VFYSKAFASLVLLPASLLFHRS---QIPPLTLPILSAFF   75 (209)
Q Consensus         1 ~~~~~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l--~~~R~~~a~l~l~~~~~~~~r~---~~~~~~~~~~~~~~   75 (209)
                      |+++..-+++..+++.++||++++-.|..-+....-++.  ..+.+++....+.   .+..+.   .....+.+.+..-+
T Consensus         1 m~~~~~~G~~~~~i~~~~~GS~~~p~K~~k~w~wE~~W~v~gi~~wl~~~~~~g---~~~~~~f~~~~~~~~~~~~~~~~   77 (345)
T PRK13499          1 MSNAIILGIIWHLIGGASSGSFYAPFKKVKKWSWETMWSVGGIFSWLILPWLIA---ALLLPDFWAYYSSFSGSTLLPVF   77 (345)
T ss_pred             CCchhHHHHHHHHHHHHHhhcccccccccCCCchhHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHhcCHHHHHHHH
Confidence            667778899999999999999999999832211112211  1111111111111   111110   01123455565555


Q ss_pred             HHHHHHHHHHHHHHHHhhccchhHHHHhh-cchHHHHHHHHHHHhhccC---CcccccchhhHHHHHHHHHHHHHHHHhc
Q 028439           76 LLGFLGTSSQFFGYAGIYYSSPTLSTALL-NLVPGFTFILAIIFRVEKL---DWRSSSSLAKSVGTIVLITGAFIMTYYK  151 (209)
Q Consensus        76 ~lg~~g~~~~~~~~~gl~~t~a~~asii~-~~~Pv~~~lla~~~~~E~~---~~~~~~~~~~~~G~~l~~~Gv~l~~~~~  151 (209)
                      +-|++-...|..++.++++...+.+--+. .+.=++..++..++++|--   +.++  ...-.+|+++.++|+.+.....
T Consensus        78 l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~Ag  155 (345)
T PRK13499         78 LFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRAG  155 (345)
T ss_pred             HHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHhh
Confidence            56665588899999999999999876554 4777888888888888643   3332  3446779999999998876521


Q ss_pred             CCccccCCCCCCCCcccC-CCCchHHHHHHHHHHHHHHHHHHHH
Q 028439          152 GPHLLMTSLPPNSSLQVF-MPQTNWVFGGLLLAVDCVFTSAWFI  194 (209)
Q Consensus       152 g~~~~~~~~~~~~~~~~~-~~~~~~~~G~~l~l~aa~~~a~y~v  194 (209)
                      .....        ++... ..+.+...|.++.+.+.+.+++|..
T Consensus       156 ~~k~~--------~~~~~~~~~~~~~KGi~ialisgi~~~~f~~  191 (345)
T PRK13499        156 QLKER--------KMGIKKAEEFNLKKGLILAVMSGIFSACFSF  191 (345)
T ss_pred             hhccc--------ccccccccccchHhHHHHHHHHHHHHHHHHH
Confidence            10000        00000 1234567999999999999999993

>TIGR00688 rarD rarD protein

Probab=97.70  E-value=0.0014  Score=54.15  Aligned_cols=101  Identities=14%  Similarity=0.132  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH---HhhcCCC-CC-CCHHHHHHHHHHHHHHHHHH
Q 028439           11 GMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASL---LFHRSQI-PP-LTLPILSAFFLLGFLGTSSQ   85 (209)
Q Consensus        11 ~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~---~~~r~~~-~~-~~~~~~~~~~~lg~~g~~~~   85 (209)
                      ..+.++++|+.+.+..|...+  -++......     .+.+.|+..   ....... .. ...++|..+..+|+++...+
T Consensus       150 ~~l~aa~~~a~~~i~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~  222 (256)
T TIGR00688       150 EALVLAFSFTAYGLIRKALKN--TDLAGFCLE-----TLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPL  222 (256)
T ss_pred             HHHHHHHHHHHHHHHHhhcCC--CCcchHHHH-----HHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHH
Confidence            456789999999999998533  233222221     222222221   1111111 11 12357888888887767899


Q ss_pred             HHHHHHhhccchhHHHHhhcchHHHHHHHHHHH
Q 028439           86 FFGYAGIYYSSPTLSTALLNLVPGFTFILAIIF  118 (209)
Q Consensus        86 ~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~  118 (209)
                      .++++|+++.+|+.++.+.++.|++..+++.++
T Consensus       223 ~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       223 LAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999998764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=97.67  E-value=0.0018  Score=54.21  Aligned_cols=167  Identities=17%  Similarity=0.150  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHh---CCCC----hHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-----------C--CHHHHHHHHHHHH
Q 028439           20 VGLMFAGKAAMS---DGMS----NLVFVFYSKAFASLVLLPASLLFHRSQIPP-----------L--TLPILSAFFLLGF   79 (209)
Q Consensus        20 g~~~i~~k~~~~---~~~~----p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~-----------~--~~~~~~~~~~lg~   79 (209)
                      +.|.+.+|.+-+   +|-|    |+.-+..-|+.=++++..+.+.+.|...+.           .  +.+.  .+++.=.
T Consensus        16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p--~lfl~Pa   93 (372)
T KOG3912|consen   16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP--VLFLPPA   93 (372)
T ss_pred             cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCc--ceecChH
Confidence            457778887643   2333    555555555555677776655544322110           0  1111  1122223


Q ss_pred             HH-HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccC
Q 028439           80 LG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMT  158 (209)
Q Consensus        80 ~g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~  158 (209)
                      +. .....+.|.|+.+|+|+.--.+-...-+||.+++.-+++.+++.+      ||+|+....+|++.+...+-.    .
T Consensus        94 l~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d~~----~  163 (372)
T KOG3912|consen   94 LCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLDVH----L  163 (372)
T ss_pred             HHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeeecc----c
Confidence            33 555666789999999999888888888999999999999998765      589999999999876422100    0


Q ss_pred             CCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 028439          159 SLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSK  204 (209)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~  204 (209)
                      ++  .+    -..-++...||++++.+-+.-|...+.-+|.+++++
T Consensus       164 ~~--~p----~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~n  203 (372)
T KOG3912|consen  164 VT--DP----YTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSN  203 (372)
T ss_pred             cc--CC----ccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            00  00    011234578999999999999999999888777654

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.65  E-value=0.00085  Score=56.05  Aligned_cols=132  Identities=15%  Similarity=0.097  Sum_probs=90.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 028439            5 GLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSS   84 (209)
Q Consensus         5 ~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~   84 (209)
                      ..|+.+.++++.+.|..+.++.|..   ++||.+..+-+ .++-++-..+.....++  +..+++.+ +-.+-|++-...
T Consensus       136 ~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPq-aiGm~i~a~i~~~~~~~--~~~~k~~~-~nil~G~~w~ig  208 (269)
T PF06800_consen  136 MKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQ-AIGMLIGAFIFNLFSKK--PFFEKKSW-KNILTGLIWGIG  208 (269)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHH-HHHHHHHHHHHhhcccc--cccccchH-HhhHHHHHHHHH
Confidence            4678899999999999999998863   48888776644 33332222211111111  12223333 346666666777


Q ss_pred             HHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHH
Q 028439           85 QFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAF  145 (209)
Q Consensus        85 ~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~  145 (209)
                      +.+++.+.+....+.+-.+..+.+++..+.+.+++||+=++|++  ..-++|+++.+.|.+
T Consensus       209 nl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~--~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  209 NLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEM--IYTLIGLILIVIGAI  267 (269)
T ss_pred             HHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhH--HHHHHHHHHHHHhhh
Confidence            88899999999999999999999999999999999998666652  334556666666654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.65  E-value=0.0024  Score=53.38  Aligned_cols=116  Identities=13%  Similarity=0.086  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhc-chHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHH
Q 028439           69 PILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLN-LVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIM  147 (209)
Q Consensus        69 ~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~asii~~-~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~  147 (209)
                      +.+..-++.|++-...|..++.+.++...+.+-=+.+ +.=+.+.+.++++++|.-+.+++  ..-..++++.++|+.+.
T Consensus        43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~lt  120 (269)
T PF06800_consen   43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVILT  120 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHHh
Confidence            6666666666666999999999999999988866664 55566888899999998765542  12244677888888876


Q ss_pred             HHhcCCccccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 028439          148 TYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVR  198 (209)
Q Consensus       148 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~  198 (209)
                      +..++++.            ...+..+...|...++++.+.|..|.++.|-
T Consensus       121 s~~~~~~~------------~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~  159 (269)
T PF06800_consen  121 SYQDKKSD------------KSSSKSNMKKGILALLISTIGYWIYSVIPKA  159 (269)
T ss_pred             cccccccc------------ccccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence            64332210            0112344568999999999999999999665

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=97.62  E-value=1e-06  Score=72.24  Aligned_cols=165  Identities=17%  Similarity=0.200  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028439           16 ECAHVGLMFAGKAAMSDGM-SNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYY   94 (209)
Q Consensus        16 ~~~wg~~~i~~k~~~~~~~-~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~   94 (209)
                      -++=+.++..+..+- .++ .|..-.++-+..=+++..|+..++ |+   .+ .-.|.+.+++++.-.-.+++...+.||
T Consensus        28 L~~t~~a~tss~la~-k~iN~Pt~QtFl~Y~LLalVY~~~~~fR-~~---~~-~~~~~hYilla~~DVEaNy~vV~AyQy  101 (336)
T KOG2766|consen   28 LLITSTAFTSSELAR-KGINAPTSQTFLNYVLLALVYGPIMLFR-RK---YI-KAKWRHYILLAFVDVEANYFVVKAYQY  101 (336)
T ss_pred             HHHHcchhhhHHHHh-ccCCCccHHHHHHHHHHHHHHhhHHHhh-hH---HH-HHHHHHhhheeEEeecccEEEeeehhh
Confidence            334444444444432 233 466677888888888888887653 21   12 223556788888766666777889999


Q ss_pred             cchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCch
Q 028439           95 SSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTN  174 (209)
Q Consensus        95 t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~  174 (209)
                      |+-+...++-.-.-..+++++++++|.|-.      ..|+.|+++|+.|+..++.++-.+            ....++.+
T Consensus       102 TsmtSi~lLDcwaip~v~~lsw~fLktrYr------lmki~gV~iCi~GvvmvV~sDV~a------------gd~aggsn  163 (336)
T KOG2766|consen  102 TSMTSIMLLDCWAIPCVLVLSWFFLKTRYR------LMKISGVVICIVGVVMVVFSDVHA------------GDRAGGSN  163 (336)
T ss_pred             cchHHHHHHHHhhhHHHHHHHHHHHHHHHh------hheeeeEEeEecceEEEEEeeecc------------ccccCCCC
Confidence            999999988876556677889999988754      457999999999998887432110            01234556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 028439          175 WVFGGLLLAVDCVFTSAWFIVQVRFLRNSK  204 (209)
Q Consensus       175 ~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~  204 (209)
                      ..+||++++.++-+||+-++....+.++.|
T Consensus       164 p~~GD~lvi~GATlYaVSNv~EEflvkn~d  193 (336)
T KOG2766|consen  164 PVKGDFLVIAGATLYAVSNVSEEFLVKNAD  193 (336)
T ss_pred             CccCcEEEEecceeeeeccccHHHHHhcCc
Confidence            679999999999999999988777666654

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.56  E-value=0.014  Score=49.65  Aligned_cols=155  Identities=17%  Similarity=0.161  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHhCCCChHHHH--HHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 028439           20 VGLMFAGKAAMSDGMSNLVFV--FYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSP   97 (209)
Q Consensus        20 g~~~i~~k~~~~~~~~p~~l~--~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a   97 (209)
                      ....++-|.++...=-|..+.  .++.+...+++...-..+ --+.+++++++.+..+-..++-.+..+.-..+++|.+.
T Consensus        25 ~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~-lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnV  103 (314)
T KOG1444|consen   25 ILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLG-LVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNV  103 (314)
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhc-eeecCCcChHHHHHHccHHHHHHHHHHHccccccccCc
Confidence            334455677775422233333  478877766665442211 11235677777777777887777777777889999999


Q ss_pred             hHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCchHHH
Q 028439           98 TLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVF  177 (209)
Q Consensus        98 ~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  177 (209)
                      ..-+++=+..|+++++....+++.+.+      +.-+..+....+|.......                   +... ...
T Consensus       104 pm~tv~kn~tii~~ai~E~lf~~~~~~------~~v~~Sv~~m~~~s~~~~~~-------------------d~sf-~~~  157 (314)
T KOG1444|consen  104 PMFTVFKNLTIILTAIGEVLFFGKRPS------NKVWASVFAMIIGSVAAAFT-------------------DLSF-NLR  157 (314)
T ss_pred             hHHHHHhhchHHHHHHhHHhhcCcCch------hhHHHHHHHHHHHHHhhccc-------------------ccee-cch
Confidence            999999999999999999999886654      34567777777777554321                   0111 135


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Q 028439          178 GGLLLAVDCVFTSAWFIVQVRFLR  201 (209)
Q Consensus       178 G~~l~l~aa~~~a~y~vl~k~~~~  201 (209)
                      |..|++.++++-+.|.+..|+..+
T Consensus       158 gY~w~~~n~~~~a~~~v~~kk~vd  181 (314)
T KOG1444|consen  158 GYSWALANCLTTAAFVVYVKKSVD  181 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhc
Confidence            899999999999999999888654

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=97.41  E-value=0.00054  Score=57.73  Aligned_cols=114  Identities=18%  Similarity=0.268  Sum_probs=82.7

Q ss_pred             CCCHHH-HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHH
Q 028439           65 PLTLPI-LSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITG  143 (209)
Q Consensus        65 ~~~~~~-~~~~~~lg~~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~G  143 (209)
                      ..++++ ++++.-.|+.+++...+-+++++|++-+.=+..=+..++|+.+++.++.-||.++.      -..-+++..+|
T Consensus        77 ~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~------L~l~v~lI~~G  150 (349)
T KOG1443|consen   77 VLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWA------LVLIVLLIAVG  150 (349)
T ss_pred             CCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhhh
Confidence            345665 34556677766889999999999999998888888999999999999999998753      23344455556


Q ss_pred             HHHHHHhcCCccccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 028439          144 AFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSK  204 (209)
Q Consensus       144 v~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~  204 (209)
                      +++++. +..+                   -...|-++++.|+++-++=-.+.+.++++.|
T Consensus       151 lflft~-KsTq-------------------f~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~  191 (349)
T KOG1443|consen  151 LFLFTY-KSTQ-------------------FNIEGFFLVLAASLLSGLRWAFTQMLLRNQP  191 (349)
T ss_pred             eeEEEe-cccc-------------------eeehhHHHHHHHHHhhhhhHHHHHHHHhcCc
Confidence            666542 3211                   1247888888888887777677777777665

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.22  E-value=0.011  Score=42.77  Aligned_cols=63  Identities=10%  Similarity=0.082  Sum_probs=53.7

Q ss_pred             HHH-HHHHHHHHHHhhccchhHH-HHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHH
Q 028439           79 FLG-TSSQFFGYAGIYYSSPTLS-TALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIM  147 (209)
Q Consensus        79 ~~g-~~~~~~~~~gl~~t~a~~a-sii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~  147 (209)
                      +.+ ...+++...++|+.|.+.| ++....--+.+.+.++++++|++++.      |++|+.+.+.|++.+
T Consensus        42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l  106 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence            444 7788889999999999988 56666888899999999999999875      599999999999875

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.18  E-value=0.0024  Score=47.05  Aligned_cols=68  Identities=15%  Similarity=0.141  Sum_probs=56.7

Q ss_pred             HHHHHH-HHHHHHHHHHhhccchhHHH-HhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHH
Q 028439           76 LLGFLG-TSSQFFGYAGIYYSSPTLST-ALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY  149 (209)
Q Consensus        76 ~lg~~g-~~~~~~~~~gl~~t~a~~as-ii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~  149 (209)
                      +..+.+ ...++++..++++.|.+.|= +...+.-+.+.+.+.++++|++++.      |++|+.+.++|++.+-.
T Consensus        34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhhc
Confidence            345555 88889999999999999884 4456788899999999999999875      69999999999988753

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.17  E-value=0.0053  Score=52.33  Aligned_cols=121  Identities=17%  Similarity=0.160  Sum_probs=84.3

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH
Q 028439            1 MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFL   80 (209)
Q Consensus         1 ~~~~~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~   80 (209)
                      ||....-+....+.+.++-+......|.+... .+.   .-.|               .+ +.++.-.++  ...+.|+.
T Consensus         1 ~~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r-~~~---~~~~---------------~~-~~~~~~l~~--~~W~~G~~   58 (300)
T PF05653_consen    1 MNTDFYIGVLLAVVSSIFIAVGFNLQKKSHLR-LPR---GSLR---------------AG-SGGRSYLRR--PLWWIGLL   58 (300)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc---cccc---------------cc-chhhHHHhh--HHHHHHHH
Confidence            56666667777777888888888888876532 110   0000               00 000000111  23455655


Q ss_pred             H-HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHH
Q 028439           81 G-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY  149 (209)
Q Consensus        81 g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~  149 (209)
                      . .+.+.+.+.++.+.|++..+-+..+.=++..+++..+++||++++      .+.|+.+++.|..+++.
T Consensus        59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVI  122 (300)
T ss_pred             HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEE
Confidence            5 667778889999999999998889999999999999999999865      58999999999987764

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=97.16  E-value=0.0019  Score=55.25  Aligned_cols=137  Identities=13%  Similarity=0.215  Sum_probs=104.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHHH-HHHHHhhcCCC----C-CCCHHHHHHHH
Q 028439            5 GLAPVIGMMMAECAHVGLMFAGKAAMS---DGMSNLVFVFYSKAFASLVLL-PASLLFHRSQI----P-PLTLPILSAFF   75 (209)
Q Consensus         5 ~~~~~l~ll~~~~~wg~~~i~~k~~~~---~~~~p~~l~~~R~~~a~l~l~-~~~~~~~r~~~----~-~~~~~~~~~~~   75 (209)
                      +..+.+....+.+..+.--++.|..+.   +.++++.+..+---++...++ |+....+....    . ..+.. .....
T Consensus       161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~  239 (316)
T KOG1441|consen  161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILL  239 (316)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHH
Confidence            467788888899999999999999883   358999999888888888888 88665444322    0 11222 34445


Q ss_pred             HHHHHHHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439           76 LLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (209)
Q Consensus        76 ~lg~~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~  148 (209)
                      +.+++..+.|...|+-+..++|-+=++....==.++...++++++|++|+.      +.+|..+++.|+.+=.
T Consensus       240 ~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  240 LNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYS  306 (316)
T ss_pred             HHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHH
Confidence            555555888889999999999998887776655666677888899998875      4999999999998744

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.13  E-value=0.0035  Score=45.01  Aligned_cols=67  Identities=13%  Similarity=0.143  Sum_probs=56.8

Q ss_pred             HHHHHH-HHHHHHHHHHhhccchhHH-HHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439           76 LLGFLG-TSSQFFGYAGIYYSSPTLS-TALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (209)
Q Consensus        76 ~lg~~g-~~~~~~~~~gl~~t~a~~a-sii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~  148 (209)
                      ++.+.+ ...+.+...++|+.|.+.| ++....--+.+.+.++++++|+++..      |++|+.+.++|++.+-
T Consensus        34 il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          34 ILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK  102 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence            344445 7888899999999999988 66677888999999999999999865      6999999999998764

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.08  E-value=0.0043  Score=44.99  Aligned_cols=66  Identities=12%  Similarity=0.164  Sum_probs=54.8

Q ss_pred             HHHHH-HHHHHHHHHHhhccchhHHH-HhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439           77 LGFLG-TSSQFFGYAGIYYSSPTLST-ALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (209)
Q Consensus        77 lg~~g-~~~~~~~~~gl~~t~a~~as-ii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~  148 (209)
                      ..+.+ .+.+.+...+++..|.+.|= +...+.-+.+.+.++++++|++++.      |++|+.+.++|++.+-
T Consensus        35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            34555 77888888999999999884 4456777888999999999999875      5999999999998875

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.95  E-value=0.0071  Score=43.48  Aligned_cols=64  Identities=8%  Similarity=-0.051  Sum_probs=54.8

Q ss_pred             HHH-HHHHHHHHHHhhccchhHH-HHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439           79 FLG-TSSQFFGYAGIYYSSPTLS-TALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (209)
Q Consensus        79 ~~g-~~~~~~~~~gl~~t~a~~a-sii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~  148 (209)
                      +.+ ...+++...++|..|.+.| ++...+--+.+.+.++++++|++++.      |++|+.+.+.|++.+-
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence            455 7888889999999999988 56666888899999999999999875      5999999999998764

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=96.89  E-value=0.095  Score=44.11  Aligned_cols=126  Identities=13%  Similarity=0.037  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028439           14 MAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQI--PPLTLPILSAFFLLGFLGTSSQFFGYAG   91 (209)
Q Consensus        14 ~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~--~~~~~~~~~~~~~lg~~g~~~~~~~~~g   91 (209)
                      ..++.||.++..=|..   ++|+.+=.+.-...-..+-+.+.++..-...  ..-+.+++..+...|...+..-.+|..|
T Consensus       155 ~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~a  231 (293)
T COG2962         155 ALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAA  231 (293)
T ss_pred             HHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHH
Confidence            3467888888887753   3777665555544433333333223222110  0023456777888888889999999999


Q ss_pred             hhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439           92 IYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (209)
Q Consensus        92 l~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~  148 (209)
                      -+..+-+.-+++++..|.+..+++.++++|+++.-      |..+-++.-.|.++..
T Consensus       232 a~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~  282 (293)
T COG2962         232 AKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFS  282 (293)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999764      5777777777776654

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.86  E-value=0.092  Score=45.59  Aligned_cols=144  Identities=16%  Similarity=0.039  Sum_probs=85.0

Q ss_pred             chHHHHHHHHHHHHHHHHH-------HHHHHHHhCCCChHHHHHHHHH---HHHHHHHH-HHHHh-hcCCC-C-----CC
Q 028439            5 GLAPVIGMMMAECAHVGLM-------FAGKAAMSDGMSNLVFVFYSKA---FASLVLLP-ASLLF-HRSQI-P-----PL   66 (209)
Q Consensus         5 ~~~~~l~ll~~~~~wg~~~-------i~~k~~~~~~~~p~~l~~~R~~---~a~l~l~~-~~~~~-~r~~~-~-----~~   66 (209)
                      ..|+.+.++++.+..+...       +.-+.+...+.+|.....-.+.   +++++.-. ++.++ +|++. +     +.
T Consensus       172 ~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~  251 (345)
T PRK13499        172 LKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSL  251 (345)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccc
Confidence            3678888888888888777       5555544457888877777766   55554432 22221 12111 0     11


Q ss_pred             CHHHHHHH----HHHHHHHHHHHHHHHHHhhccchhHHHH---hh-cchHHHHHHHHHHHhhccCCcccccchhhHHHHH
Q 028439           67 TLPILSAF----FLLGFLGTSSQFFGYAGIYYSSPTLSTA---LL-NLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTI  138 (209)
Q Consensus        67 ~~~~~~~~----~~lg~~g~~~~~~~~~gl~~t~a~~asi---i~-~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~  138 (209)
                      +++.+.+=    .+.|++-...+.++..|-+..+.+.+.+   +. .+.-++..+-+. ++||+=+-.++..+.-++|++
T Consensus       252 ~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~v  330 (345)
T PRK13499        252 AKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCV  330 (345)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHH
Confidence            22222232    3333333666778888888775555544   44 444455454454 699986643444567788999


Q ss_pred             HHHHHHHHHHH
Q 028439          139 VLITGAFIMTY  149 (209)
Q Consensus       139 l~~~Gv~l~~~  149 (209)
                      +.+.|+.++..
T Consensus       331 liI~g~~lig~  341 (345)
T PRK13499        331 VIILAANIVGL  341 (345)
T ss_pred             HHHHHHHHHhh
Confidence            99999988763

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=96.85  E-value=0.05  Score=41.01  Aligned_cols=107  Identities=22%  Similarity=0.234  Sum_probs=70.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhcc-hHHHHHH
Q 028439           35 SNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNL-VPGFTFI  113 (209)
Q Consensus        35 ~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~asii~~~-~Pv~~~l  113 (209)
                      +|+.-++.-+..+.+++..+.+..+++..+..+.-+| +..+-|++|..+-.+..+.....+++.+..+.-+ .=+...+
T Consensus        29 s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~-w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~  107 (138)
T PF04657_consen   29 SPLVASFISFGVGFILLLIILLITGRPSLASLSSVPW-WAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLL  107 (138)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCCh-HHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            5999999999999998887766654432222211122 3344677778888888999999999988777654 3333444


Q ss_pred             HHHH--HhhccCCcccccchhhHHHHHHHHHHHHH
Q 028439          114 LAII--FRVEKLDWRSSSSLAKSVGTIVLITGAFI  146 (209)
Q Consensus       114 la~~--~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l  146 (209)
                      +.++  +..||    ++.+..|++|+.+.++|+.+
T Consensus       108 iD~fG~fg~~~----~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen  108 IDHFGLFGAPK----RPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHccccCCCC----CCCCHHHHHHHHHHHHHHhC
Confidence            4443  22222    22345689999999999853

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.78  E-value=0.0098  Score=48.70  Aligned_cols=147  Identities=14%  Similarity=0.159  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHH
Q 028439           37 LVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAI  116 (209)
Q Consensus        37 ~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~  116 (209)
                      +.+.++++.+-.++-=.+..+  |++. +.+...-+....+++-..+.+...+.++||.+=-...+=-+.-|+=++++++
T Consensus        54 laLVf~qC~~N~vfAkvl~~i--r~~~-~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGV  130 (337)
T KOG1580|consen   54 LALVFFQCTANTVFAKVLFLI--RKKT-EIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGV  130 (337)
T ss_pred             HHHHHHHHHHHHHHHHhheee--cccc-cccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeeh
Confidence            455666666555543222222  2211 1222122234555554477778889999999887777777889999999999


Q ss_pred             HHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 028439          117 IFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQ  196 (209)
Q Consensus       117 ~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~  196 (209)
                      ++.|++-+|      +|...++..+.|+++....++..             .+.+.++...|.++++++---=+.-...|
T Consensus       131 l~~~KsY~w------~kY~cVL~IV~GValFmYK~~Kv-------------~g~e~~t~g~GElLL~lSL~mDGlTg~~Q  191 (337)
T KOG1580|consen  131 LFAHKSYHW------RKYCCVLMIVVGVALFMYKENKV-------------GGAEDKTFGFGELLLILSLAMDGLTGSIQ  191 (337)
T ss_pred             hhhcccccH------HHHHHHHHHHHHHHHhhcccccc-------------CCCcccccchHHHHHHHHHHhcccchhHH
Confidence            999887765      46999999999998876432321             12233445689999998887777788888


Q ss_pred             HHHHhhcCC
Q 028439          197 VRFLRNSKS  205 (209)
Q Consensus       197 k~~~~~~~~  205 (209)
                      .|+.+.|.+
T Consensus       192 drira~yq~  200 (337)
T KOG1580|consen  192 DRIRASYQR  200 (337)
T ss_pred             HHHHHhhcc
Confidence            888877764

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.69  E-value=0.0037  Score=45.48  Aligned_cols=108  Identities=15%  Similarity=0.106  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHH
Q 028439           13 MMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TSSQFFGYAG   91 (209)
Q Consensus        13 l~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g-~~~~~~~~~g   91 (209)
                      +++.++||....+.|.+.+ +.++..-.. |..--...+                .+.+.+  ...+.- -.....|++.
T Consensus         2 l~Vg~~WG~Tnpfik~g~~-~~~~~~~~~-~~~~~~~~L----------------l~n~~y--~ipf~lNq~GSv~f~~~   61 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSS-GLEKVKASL-QLLQEIKFL----------------LLNPKY--IIPFLLNQSGSVLFFLL   61 (113)
T ss_pred             eeehHHhcCchHHHHHHHh-hcCCccchH-HHHHHHHHH----------------HHhHHH--HHHHHHHHHHHHHHHHH
Confidence            4578999999999999875 455443331 322111110                011111  224444 5566778899


Q ss_pred             hhccchhHHHHhh-cchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHH
Q 028439           92 IYYSSPTLSTALL-NLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI  146 (209)
Q Consensus        92 l~~t~a~~asii~-~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l  146 (209)
                      +..++-+.+.-+. ++.=++|.+.++++.+|..+++      .++|+.+.+.|+.+
T Consensus        62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVAL  111 (113)
T ss_pred             HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeee
Confidence            9999999998886 6788899998987777765543      59999999999865

Many members are annotated as potential transmembrane proteins.

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.52  E-value=0.01  Score=41.62  Aligned_cols=56  Identities=14%  Similarity=0.091  Sum_probs=33.6

Q ss_pred             HHHH-HHHHHHHHHHhhccchhHH-HHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHH
Q 028439           78 GFLG-TSSQFFGYAGIYYSSPTLS-TALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIV  139 (209)
Q Consensus        78 g~~g-~~~~~~~~~gl~~t~a~~a-sii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l  139 (209)
                      .+.+ ...++++..++++.|.+.+ ++...+..+.+.+.+.++++|++|.+|      ++|+.+
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~------~~gi~l   92 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK------WLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------Hhheee
Confidence            4445 7888899999999999998 566679999999999999999998764      787654

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.35  E-value=0.0021  Score=53.38  Aligned_cols=133  Identities=13%  Similarity=0.093  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028439            9 VIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFG   88 (209)
Q Consensus         9 ~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~~   88 (209)
                      ..+.+.+.+.=+..++..|..-+ ..+......+=-+++.+.-+........-+. +...||+..+..+|++|.+.|.+.
T Consensus       193 t~aai~s~lf~asvyIilR~iGk-~~h~~msvsyf~~i~lV~s~I~~~~ig~~~l-P~cgkdr~l~~~lGvfgfigQIll  270 (346)
T KOG4510|consen  193 TVAAISSVLFGASVYIILRYIGK-NAHAIMSVSYFSLITLVVSLIGCASIGAVQL-PHCGKDRWLFVNLGVFGFIGQILL  270 (346)
T ss_pred             hHHHHHhHhhhhhHHHHHHHhhc-cccEEEEehHHHHHHHHHHHHHHhhccceec-CccccceEEEEEehhhhhHHHHHH
Confidence            45556666666667777776523 2444433333333333332222211222223 345788888999999999999999


Q ss_pred             HHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHH
Q 028439           89 YAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY  149 (209)
Q Consensus        89 ~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~  149 (209)
                      ..|+|---|+-.+++.++--++..+...++++|..|+.      .|.|.++.+.-.+++..
T Consensus       271 Tm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~w------s~~Ga~~vvsS~v~~a~  325 (346)
T KOG4510|consen  271 TMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIW------SWVGAVMVVSSTVWVAL  325 (346)
T ss_pred             HHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHH------HhhceeeeehhHHHHHH
Confidence            99999999999999999999999999999999987765      47887777666665543

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=95.52  E-value=0.19  Score=43.83  Aligned_cols=139  Identities=14%  Similarity=0.201  Sum_probs=95.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHHHhhc---CCCCCCCHHHHHHHHHHH
Q 028439            5 GLAPVIGMMMAECAHVGLMFAGKAAMSDG---MSNLVFVFYSKAFASLVLLPASLLFHR---SQIPPLTLPILSAFFLLG   78 (209)
Q Consensus         5 ~~~~~l~ll~~~~~wg~~~i~~k~~~~~~---~~p~~l~~~R~~~a~l~l~~~~~~~~r---~~~~~~~~~~~~~~~~lg   78 (209)
                      ...+.+..+++++.||.+.++.|.=..++   +|--.+..+=-++..+++.|..+...+   .+.+-++..+...+++.+
T Consensus       245 ~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~  324 (416)
T KOG2765|consen  245 PLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNN  324 (416)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhh
Confidence            35678889999999999999999855432   444333333344556666665544222   222222344566678899


Q ss_pred             HHH-HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHH
Q 028439           79 FLG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY  149 (209)
Q Consensus        79 ~~g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~  149 (209)
                      ++| ++.-+++.+|.-.|++-.+++=+++.--..++.-.++.+.+.      +...++|.+..+.|-+.+..
T Consensus       325 ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~------S~~~iiGsi~Ifv~Fv~vn~  390 (416)
T KOG2765|consen  325 LIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHP------SALYIIGSIPIFVGFVIVNI  390 (416)
T ss_pred             HHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCC------CHHHHHHHHHHHHHHhheec
Confidence            999 999999999999999999988777433344555555555544      45679999999999887764

>TIGR00803 nst UDP-galactose transporter

Probab=95.21  E-value=0.15  Score=41.10  Aligned_cols=59  Identities=12%  Similarity=0.111  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHH
Q 028439           81 GTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAF  145 (209)
Q Consensus        81 g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~  145 (209)
                      ....+.+..+-+++.++..-+....+.++++.+++.++++|+++..      ++.|+.+.+.|+.
T Consensus       162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~  220 (222)
T TIGR00803       162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF  220 (222)
T ss_pred             HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence            3666677889999999999999999999999999999999998765      5899988888763

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.99  E-value=0.92  Score=38.62  Aligned_cols=148  Identities=20%  Similarity=0.209  Sum_probs=94.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhc--chHHHHH
Q 028439           35 SNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLN--LVPGFTF  112 (209)
Q Consensus        35 ~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~asii~~--~~Pv~~~  112 (209)
                      +|..+.+.+-+.+.++=  ..+...++.. ....+.|......++...+...+.+.+++|.+=-.-.+==.  +.|++  
T Consensus        50 ~~~fL~~~q~l~~~~~s--~~~l~~~k~~-~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm--  124 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVS--YAMLKWWKKE-LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVM--  124 (327)
T ss_pred             ccHHHHHHHHHHHHHHH--HHHHhccccc-CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHH--
Confidence            56667777666665553  2223333322 22344577788888888888999999999976443333223  56665  


Q ss_pred             HHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHH
Q 028439          113 ILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAW  192 (209)
Q Consensus       113 lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y  192 (209)
                      +...++.+.|.+.+      |.+...+.-.|+.+....+..+ ..          ...++++..+|..++...-+.=++-
T Consensus       125 lmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~-s~----------~~~g~~ns~~G~~Ll~~~L~fDgfT  187 (327)
T KOG1581|consen  125 LMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD-SS----------SKSGRENSPIGILLLFGYLLFDGFT  187 (327)
T ss_pred             HHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC-Cc----------cccCCCCchHhHHHHHHHHHHHhhH
Confidence            55788888887654      4666666678886654432211 00          1122344578999999888888888


Q ss_pred             HHHHHHHHhhcC
Q 028439          193 FIVQVRFLRNSK  204 (209)
Q Consensus       193 ~vl~k~~~~~~~  204 (209)
                      +..|+++.++|.
T Consensus       188 n~tQd~lf~~~k  199 (327)
T KOG1581|consen  188 NATQDSLFKKYK  199 (327)
T ss_pred             HhHHHHHhccCC
Confidence            889999888554

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.48  E-value=0.076  Score=43.60  Aligned_cols=73  Identities=15%  Similarity=0.210  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHH
Q 028439           69 PILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIM  147 (209)
Q Consensus        69 ~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~  147 (209)
                      ..|..+.++++.+.+.|.+.|.-+.+-+|-..|++.++--.||.+.+++++..+++.||      |+|.++.+.|...=
T Consensus       239 ~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQ------wlgtvlVF~aL~~D  311 (337)
T KOG1580|consen  239 YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQ------WLGTVLVFSALTAD  311 (337)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHHhhhH
Confidence            34667888888888999999999999999999999999999999999999999998765      89999999988553

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=93.50  E-value=0.0053  Score=50.46  Aligned_cols=166  Identities=12%  Similarity=0.106  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028439            8 PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFF   87 (209)
Q Consensus         8 ~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~   87 (209)
                      .++..++=++.||+.+.+...   -|=+|..-..- ..++++++....++. .  +|..+.+.+.--++-|.+-...|..
T Consensus         3 ~~liaL~P~l~WGsip~v~~k---~GG~p~qQ~lG-tT~GALifaiiv~~~-~--~p~~T~~~~iv~~isG~~Ws~GQ~~   75 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANK---FGGKPYQQTLG-TTLGALIFAIIVFLF-V--SPELTLTIFIVGFISGAFWSFGQAN   75 (288)
T ss_pred             hHHHHHHHHHHhcccceeeee---cCCChhHhhhh-ccHHHHHHHHHHhee-e--cCccchhhHHHHHHhhhHhhhhhhh
Confidence            456667778999998877543   13455544332 334444444443333 2  3445555555444444444888999


Q ss_pred             HHHHhhccchhHHHHhhc-chHHHHHHHHHHHhhccCCcccccchhhHH---HHHHHHHHHHHHHHhcCCccccCCCCCC
Q 028439           88 GYAGIYYSSPTLSTALLN-LVPGFTFILAIIFRVEKLDWRSSSSLAKSV---GTIVLITGAFIMTYYKGPHLLMTSLPPN  163 (209)
Q Consensus        88 ~~~gl~~t~a~~asii~~-~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~---G~~l~~~Gv~l~~~~~g~~~~~~~~~~~  163 (209)
                      ++-++++.+.++|.=+.+ +.=+-+.+++++.++|--+..+     .++   ++++.+.|+.+-+..+..+         
T Consensus        76 Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~-----~IlG~iAliliviG~~lTs~~~~~n---------  141 (288)
T COG4975          76 QFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQ-----IILGFIALILIVIGIYLTSKQDRNN---------  141 (288)
T ss_pred             hhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchh-----HHHHHHHHHHHHHhheEeeeecccc---------
Confidence            999999999999876665 6667778888999999765543     233   3445555665543221100         


Q ss_pred             CCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 028439          164 SSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQV  197 (209)
Q Consensus       164 ~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl~k  197 (209)
                      .+   .++.++...|...++.+.+.|-.|.++.+
T Consensus       142 k~---~~~~~n~kkgi~~L~iSt~GYv~yvvl~~  172 (288)
T COG4975         142 KE---EENPSNLKKGIVILLISTLGYVGYVVLFQ  172 (288)
T ss_pred             cc---ccChHhhhhheeeeeeeccceeeeEeeec
Confidence            00   11223455777777778888887777644

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.64  E-value=0.041  Score=46.92  Aligned_cols=119  Identities=15%  Similarity=0.142  Sum_probs=80.1

Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHH
Q 028439            2 GKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLPILSAFFLLGFL   80 (209)
Q Consensus         2 ~~~~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~-~~~~~~~~~~~~~~lg~~   80 (209)
                      +++...+....+.+.++.|.++++-|.+... ...   ...               +..+. .+.+  ++  +....|++
T Consensus        16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r-~~~---~~~---------------ra~~gg~~yl--~~--~~Ww~G~l   72 (335)
T KOG2922|consen   16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKR-AGA---SGL---------------RAGEGGYGYL--KE--PLWWAGML   72 (335)
T ss_pred             ccCceeeeeehhhccEEEeeehhhhHHHHHH-Hhh---hcc---------------cccCCCcchh--hh--HHHHHHHH
Confidence            3444455556666777788888888877543 100   000               11111 1111  22  34455655


Q ss_pred             H-HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHH
Q 028439           81 G-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY  149 (209)
Q Consensus        81 g-~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~  149 (209)
                      - .+....-|.+..+.|++..+-+-++.-+.-++++..+++||++++      ..+|..++++|..+++.
T Consensus        73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~  136 (335)
T KOG2922|consen   73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVI  136 (335)
T ss_pred             HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEE
Confidence            5 556666667888889998888889999999999999999999876      47899999999987763

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=92.41  E-value=2.9  Score=35.70  Aligned_cols=109  Identities=16%  Similarity=0.196  Sum_probs=80.7

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-CC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhc
Q 028439           32 DGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IP-----PLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLN  105 (209)
Q Consensus        32 ~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~-~~-----~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~asii~~  105 (209)
                      ..+++.++.+.-.+..++.=....+  ..+. ++     +.+++-+..+++++.+|+..|.+.++-++.-.+-.-+.|+.
T Consensus       198 ~k~s~~~mM~~vNLf~~i~~~~~li--~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~t  275 (327)
T KOG1581|consen  198 YKVSSLHMMFGVNLFSAILNGTYLI--LQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMT  275 (327)
T ss_pred             CCccHhHHHHHHHHHHHHHHHHhhh--cCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHH
Confidence            4688998888877776655433322  1211 11     12344567789999999888888888888888887788888


Q ss_pred             chHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439          106 LVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (209)
Q Consensus       106 ~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~  148 (209)
                      +==.+.++++.+.++.++++.|      |.|+.+.+.|..+=.
T Consensus       276 tRk~~si~lS~i~f~h~~s~~q------~~g~~iVFg~i~l~~  312 (327)
T KOG1581|consen  276 TRKMVSIMLSCIVFGHPLSSEQ------WLGVLIVFGGIFLEI  312 (327)
T ss_pred             HHHHHHHHHHHHHhCCccchhh------ccCeeeehHHHHHHH
Confidence            8889999999999999998765      788999988886644

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.97  E-value=0.21  Score=41.97  Aligned_cols=146  Identities=16%  Similarity=0.105  Sum_probs=81.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhcC----CCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhcchH
Q 028439           35 SNLVFVFYSKAFASLVLLPASLLFHRS----QIPP--LTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVP  108 (209)
Q Consensus        35 ~p~~l~~~R~~~a~l~l~~~~~~~~r~----~~~~--~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~asii~~~~P  108 (209)
                      .|+....++.+....+-..+.....+-    ..|+  ++.+..+.+.=+.+.-.+...+-++.++|.+.+.=-+=-.+.-
T Consensus        60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLtt  139 (347)
T KOG1442|consen   60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTT  139 (347)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhh
Confidence            477788888877665554443322211    1122  3334344443344332222333345666666553222234666


Q ss_pred             HHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcccCCCCchHHHHHHHHHHHHHH
Q 028439          109 GFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVF  188 (209)
Q Consensus       109 v~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~  188 (209)
                      +|+.++++.++|+|-+...      ..+..+.+.|--+     |...+            +..+.-...|.++...|.++
T Consensus       140 vFtVlLtyvllkqkTs~~~------~~~C~lIi~GF~l-----GvdqE------------~~~~~ls~~GvifGVlaSl~  196 (347)
T KOG1442|consen  140 VFTVLLTYVLLKQKTSFFA------LGCCLLIILGFGL-----GVDQE------------GSTGTLSWIGVIFGVLASLA  196 (347)
T ss_pred             hHHHHhHHhhccccccccc------ceeehhheehhee-----ccccc------------cccCccchhhhHHHHHHHHH
Confidence            8999999999999866432      3343343334321     21111            01122235899999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 028439          189 TSAWFIVQVRFLRNS  203 (209)
Q Consensus       189 ~a~y~vl~k~~~~~~  203 (209)
                      -|...+..||.+...
T Consensus       197 vAlnaiytkk~l~~v  211 (347)
T KOG1442|consen  197 VALNAIYTKKVLPPV  211 (347)
T ss_pred             HHHHHHhhheecccc
Confidence            999999988765443

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.88  E-value=2.3  Score=36.35  Aligned_cols=136  Identities=13%  Similarity=0.166  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhcC-----CCC-CCCHHHHHHHHHHHH
Q 028439            7 APVIGMMMAECAHVGLMFAGKAAMS-DGMSNLVFVFYSKAFASLVLLPASLLFHRS-----QIP-PLTLPILSAFFLLGF   79 (209)
Q Consensus         7 ~~~l~ll~~~~~wg~~~i~~k~~~~-~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~-----~~~-~~~~~~~~~~~~lg~   79 (209)
                      ++|..+....+.=....+..|...+ .+.+-+.+.++.-+.+...+..+.+..+-.     ..+ ..+...+..+.+-++
T Consensus       157 ~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv  236 (314)
T KOG1444|consen  157 RGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCV  236 (314)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHH
Confidence            4677777777777777788888664 357778888999888877776665443210     011 112233455566666


Q ss_pred             HHHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439           80 LGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (209)
Q Consensus        80 ~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~  148 (209)
                      +|..-.++-++..+.+||..-++.-...=..+.+...++++++.++      ..++|+.+++.|-++=.
T Consensus       237 ~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~------~n~~gll~~~~ggv~Y~  299 (314)
T KOG1444|consen  237 MGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTF------LNVIGLLVGFFGGVLYS  299 (314)
T ss_pred             HHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceech------hhhHHHHHHhhhhhHHh
Confidence            6677778888999999999888887555555666666677777764      46999999999986643

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=89.66  E-value=1.5  Score=36.91  Aligned_cols=131  Identities=13%  Similarity=0.076  Sum_probs=82.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchh-HHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHH
Q 028439           64 PPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPT-LSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLIT  142 (209)
Q Consensus        64 ~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~-~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~  142 (209)
                      ++++.|++...+.+=   ...+.+-++++++-=+- .=-++-.-.++-++++++++.+.|-+.+      |+..+++.-+
T Consensus        60 ~kiplk~Y~i~V~mF---F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iTi  130 (330)
T KOG1583|consen   60 PKIPLKDYAITVAMF---FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLR------QYSSVLMITI  130 (330)
T ss_pred             CCCchhhhheehhee---eeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehh------hhhhHHhhhh
Confidence            567777765433332   23344445666662221 2223335678889999999998887665      5889999999


Q ss_pred             HHHHHHHhcCCccccCCCCCCCCcccC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028439          143 GAFIMTYYKGPHLLMTSLPPNSSLQVF-MPQTNWVFGGLLLAVDCVFTSAWFIVQVRFLRNSKS  205 (209)
Q Consensus       143 Gv~l~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~G~~l~l~aa~~~a~y~vl~k~~~~~~~~  205 (209)
                      |+++-.+.+.++...  .+.+-+..++ ..-..|.+|..++..|-+.-|.-.+.|++.-|||..
T Consensus       131 GiiIcTl~s~~d~~~--~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGK  192 (330)
T KOG1583|consen  131 GIIICTLFSSKDGRS--KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGK  192 (330)
T ss_pred             hheeEEeecCcchhh--hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            998776544332211  0000000001 122347799999999999999999999998888864

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=89.45  E-value=7.7  Score=32.98  Aligned_cols=138  Identities=17%  Similarity=0.139  Sum_probs=90.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHHHHHHHHHHHHHHHH----HhhcC---CCCCCCHHHHHH--
Q 028439            4 VGLAPVIGMMMAECAHVGLMFAGKA-AMSDGMSNLVFVFYSKAFASLVLLPASL----LFHRS---QIPPLTLPILSA--   73 (209)
Q Consensus         4 ~~~~~~l~ll~~~~~wg~~~i~~k~-~~~~~~~p~~l~~~R~~~a~l~l~~~~~----~~~r~---~~~~~~~~~~~~--   73 (209)
                      +-..+.++.++++++-+.-++.-.. ....+++|+..+.+.-+.+.+++..++.    ....+   ..++-.+.||..  
T Consensus       173 ~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~  252 (372)
T KOG3912|consen  173 SIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAF  252 (372)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHH
Confidence            3456778899999999999888544 4456799999999997777555433322    21111   112223444432  


Q ss_pred             ----------HHHHHHHH--HHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHH
Q 028439           74 ----------FFLLGFLG--TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLI  141 (209)
Q Consensus        74 ----------~~~lg~~g--~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~  141 (209)
                                +.+.|+.-  +.++..-..=-++.+|++=.++-.+=-.++.+++.....|++..-      ++.|.++-.
T Consensus       253 ~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~ll------qilGFliLi  326 (372)
T KOG3912|consen  253 AALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLL------QILGFLILI  326 (372)
T ss_pred             HHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH------HHHHHHHHH
Confidence                      23333332  233322223335678888888888888888888999999998764      589999999


Q ss_pred             HHHHHH
Q 028439          142 TGAFIM  147 (209)
Q Consensus       142 ~Gv~l~  147 (209)
                      .|+++-
T Consensus       327 ~Gi~lY  332 (372)
T KOG3912|consen  327 MGIILY  332 (372)
T ss_pred             HHHHHH
Confidence            998763

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=87.95  E-value=0.058  Score=44.50  Aligned_cols=133  Identities=16%  Similarity=0.130  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028439            7 APVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQF   86 (209)
Q Consensus         7 ~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~   86 (209)
                      |+...++.+.+-+-.+.+..+.-.-++.+.+.--+.-+.++++++..      ++..++.++..+. -.+-|++-...+.
T Consensus       152 kgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~------~~~~~~~~K~t~~-nii~G~~Wa~GNl  224 (288)
T COG4975         152 KGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGF------FKMEKRFNKYTWL-NIIPGLIWAIGNL  224 (288)
T ss_pred             hheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHhh------cccccchHHHHHH-HHhhHHHHHhhHH
Confidence            34444445555555555555543223455554445556666655431      1212233333443 4556666667777


Q ss_pred             HHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHH
Q 028439           87 FGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (209)
Q Consensus        87 ~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~  148 (209)
                      +++++-+....+.+=.+..+.-++..+-+.++++||=|+|++  ..-+.|+++.+.|+.++.
T Consensus       225 ~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm--~~v~iGiilivvgai~lg  284 (288)
T COG4975         225 FMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEM--VYVIIGIILIVVGAILLG  284 (288)
T ss_pred             HHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhh--hhhhhhHHHHHHHhhhhh
Confidence            778887776666555666677777777788999999888774  456778888888887654

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.61  E-value=11  Score=28.86  Aligned_cols=110  Identities=13%  Similarity=0.068  Sum_probs=62.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhh-cchHHHHHH
Q 028439           35 SNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALL-NLVPGFTFI  113 (209)
Q Consensus        35 ~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~asii~-~~~Pv~~~l  113 (209)
                      +|+.-.+.-+..+.+++..+.+..+++.......+.-.+...-|++|..+-..-........++....+. .-.=+.-++
T Consensus        33 spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~gll  112 (150)
T COG3238          33 SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLL  112 (150)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHH
Confidence            5999999999999999888877632222111111111233444555555555555555555555543333 333334444


Q ss_pred             HHHH-HhhccCCcccccchhhHHHHHHHHHHHHHH
Q 028439          114 LAII-FRVEKLDWRSSSSLAKSVGTIVLITGAFIM  147 (209)
Q Consensus       114 la~~-~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~  147 (209)
                      +..+ +++++   ++.++..|++|+++.++|++++
T Consensus       113 iD~fG~~g~~---~~~~~~~r~lgi~L~l~gil~~  144 (150)
T COG3238         113 IDHFGWFGVP---KRPLNLPRILGILLVLAGILLA  144 (150)
T ss_pred             HHhhcccCCC---cCCCCHHHHHHHHHHHHHHHHh
Confidence            4433 22222   2345678899999999996554

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=86.69  E-value=19  Score=30.92  Aligned_cols=134  Identities=18%  Similarity=0.173  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHHHHHHHHHHhhcCCC----C---CCC----HHHHH
Q 028439            8 PVIGMMMAECAHVGLMFAGKAAMSDG----MSNLVFVFYSKAFASLVLLPASLLFHRSQI----P---PLT----LPILS   72 (209)
Q Consensus         8 ~~l~ll~~~~~wg~~~i~~k~~~~~~----~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~----~---~~~----~~~~~   72 (209)
                      +......+.++-|.-..+.+..++..    =+|++..+.=.-.-.+.++|..+..++...    +   ..+    .+...
T Consensus       165 Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g  244 (349)
T KOG1443|consen  165 GFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIG  244 (349)
T ss_pred             hHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHH
Confidence            45555666666666666777666431    256666555555556666777666554221    0   011    12233


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHH
Q 028439           73 AFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIM  147 (209)
Q Consensus        73 ~~~~lg~~g~~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~  147 (209)
                      .+.+.|+...+--...+.=+..|+.-..++.--.-=+.+.+++..+.+|+++.      ..|.|..++..|+.+=
T Consensus       245 ~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~------lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  245 LISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSL------LNWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhh------hHHHHHHHHHHHHHHh
Confidence            33333333322222233334444444444444445577888999999999974      4699999999999763

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=84.53  E-value=26  Score=30.44  Aligned_cols=183  Identities=16%  Similarity=0.126  Sum_probs=105.0

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcC-C----CCCCCHHHHHHHH
Q 028439            1 MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRS-Q----IPPLTLPILSAFF   75 (209)
Q Consensus         1 ~~~~~~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~-~----~~~~~~~~~~~~~   75 (209)
                      |+.+-..+.+.-.++.++=|+.++=.|..-+-.-....+.   +.+-+-++.|+......- .    ....+...+....
T Consensus         1 m~~~ii~Gii~h~iGg~~~~sfy~P~kkvk~WsWEs~Wlv---~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~   77 (344)
T PF06379_consen    1 MNSAIILGIIFHAIGGFASGSFYVPFKKVKGWSWESYWLV---QGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTF   77 (344)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhccchhhcCCccHHHHHHH---HHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHH
Confidence            6666777888888889999999998888643322333333   334444555654322111 0    0112334555666


Q ss_pred             HHHHHHHHHHHHHHHHhhccchhHH-HHhhcchHHHHHHHHHHHhhc--cCCcccccchhhHHHHHHHHHHHHHHHHhcC
Q 028439           76 LLGFLGTSSQFFGYAGIYYSSPTLS-TALLNLVPGFTFILAIIFRVE--KLDWRSSSSLAKSVGTIVLITGAFIMTYYKG  152 (209)
Q Consensus        76 ~lg~~g~~~~~~~~~gl~~t~a~~a-sii~~~~Pv~~~lla~~~~~E--~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~~g  152 (209)
                      +.|++-......|=.+++|..-+.. ++...++-++-.++-.++.++  .+ ..+..++.-++|++++++|+.+.... |
T Consensus        78 l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l-~~~~~g~~vL~Gv~v~LiGIai~g~A-G  155 (344)
T PF06379_consen   78 LFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDEL-LATPSGQIVLLGVAVCLIGIAICGKA-G  155 (344)
T ss_pred             HHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCccccc-ccCCCchhhhhHHHHHHHHHHHHhHH-H
Confidence            6777655666677788888777754 233344444444443333221  11 11223566789999999999887632 2


Q ss_pred             CccccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 028439          153 PHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIV  195 (209)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~vl  195 (209)
                      ..      ++. +......+.+...|.+..+.|.+--|++++-
T Consensus       156 ~~------Ke~-~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g  191 (344)
T PF06379_consen  156 SM------KEK-ELGEEAKEFNFKKGLIIAVLSGVMSACFNFG  191 (344)
T ss_pred             Hh------hhh-hhccchhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            11      000 0000112334568999999998888887764

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=84.01  E-value=22  Score=29.22  Aligned_cols=120  Identities=9%  Similarity=-0.047  Sum_probs=75.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH-hhcCCCCCC-CHHHHHHHHHHHHHH-H
Q 028439            6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLL-FHRSQIPPL-TLPILSAFFLLGFLG-T   82 (209)
Q Consensus         6 ~~~~l~ll~~~~~wg~~~i~~k~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~-~~r~~~~~~-~~~~~~~~~~lg~~g-~   82 (209)
                      ..+.++.++++++-|...+.....++++-.|+..--.+..+-+++...+... ..+.+..+. -.+.+-...+.-++. +
T Consensus       113 ~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a  192 (244)
T PF04142_consen  113 LLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQA  192 (244)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHHH
Confidence            4567788888999999999998888765456655555555555544443322 221111111 012222223333333 5


Q ss_pred             HHHHHHHHHhhccchhHHHHhhcchHHHHHHHHHHHhhccCCc
Q 028439           83 SSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDW  125 (209)
Q Consensus        83 ~~~~~~~~gl~~t~a~~asii~~~~Pv~~~lla~~~~~E~~~~  125 (209)
                      ..-.....-+||.+.-.=..-.+..=+++.+++..+++.+++.
T Consensus       193 ~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~  235 (244)
T PF04142_consen  193 IGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSL  235 (244)
T ss_pred             HhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence            5555666788998888777777888899999999999998875

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=81.57  E-value=14  Score=30.47  Aligned_cols=117  Identities=15%  Similarity=0.182  Sum_probs=81.7

Q ss_pred             HHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 028439           24 FAGKAAMS-DGMSNLVFVFYSKAFASLVLLPASLLFHRSQIP----PLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPT   98 (209)
Q Consensus        24 i~~k~~~~-~~~~p~~l~~~R~~~a~l~l~~~~~~~~r~~~~----~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~   98 (209)
                      +.+|...+ ....-.+-.++..+++..+++.+.+..+.....    ..+......+++-|+....-.++.-|.++-++.+
T Consensus       172 L~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSST  251 (309)
T COG5070         172 LIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSST  251 (309)
T ss_pred             HHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhh
Confidence            34554432 235667889999999998888887765432211    1222334455555655566677778889999999


Q ss_pred             HHHHhhcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHH
Q 028439           99 LSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI  146 (209)
Q Consensus        99 ~asii~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l  146 (209)
                      .-+.+-++.-.-..+.+.+++.|+.+..      ++..+++++...++
T Consensus       252 tySMvGALNKlp~alaGlvffdap~nf~------si~sillGflsg~i  293 (309)
T COG5070         252 TYSMVGALNKLPIALAGLVFFDAPVNFL------SIFSILLGFLSGAI  293 (309)
T ss_pred             HHHHHHHhhhChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHH
Confidence            8888888888888898999999998753      58888888764433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.54
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.52

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.54  E-value=1.9e-07  Score=69.44  Aligned_cols=69  Identities=14%  Similarity=0.210  Sum_probs=52.7

Q ss_pred             HHHHHH-HHHHHHHHHHhhccchhHHHHh-hcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHHh
Q 028439           76 LLGFLG-TSSQFFGYAGIYYSSPTLSTAL-LNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYY  150 (209)
Q Consensus        76 ~lg~~g-~~~~~~~~~gl~~t~a~~asii-~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~~  150 (209)
                      ++|++. .+++++++.++++.+++.+..+ .++.|+++.++++++++|++++++      ++|+.+.++|++++...
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~------~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINLL  104 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C------HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhcC
Confidence            577777 9999999999999999999888 899999999999999999998764      99999999999988753

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.52  E-value=3.8e-07  Score=65.25  Aligned_cols=68  Identities=15%  Similarity=0.205  Sum_probs=61.4

Q ss_pred             HHHHHH-HHHHHHHHHHhhccchhHHHHh-hcchHHHHHHHHHHHhhccCCcccccchhhHHHHHHHHHHHHHHHH
Q 028439           76 LLGFLG-TSSQFFGYAGIYYSSPTLSTAL-LNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY  149 (209)
Q Consensus        76 ~lg~~g-~~~~~~~~~gl~~t~a~~asii-~~~~Pv~~~lla~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~l~~~  149 (209)
                      +.++.+ .+++.++..++++.|.+.+..+ ..+.|+++.++++++++|+++++      |++|+.+.++|++.+..
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            577777 8899999999999999999877 79999999999999999999865      59999999999988763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00