Citrus Sinensis ID: 028466

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVDVNLKSSNTNTSQSQPQSGGCAC
Secondary Structure (PSIPRED)
cccccccccccEEEEccccccHHHHHHHcccccccccccccccEEEEEcEEEEcccEEEEEEEEccccccccccHHHHHHcccEEEEEEEcccHHHHHcHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHEEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEcHHHHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHccHHHcccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MAPVSALAKYKLVflgdqsvgktSIITRFMydkfdntyqaTIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIpsyirdssVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAlpgmetlsstkqedlVDVNLkssntntsqsqpqsggcac
Flexible Loop (DISEMBL)
MAPVSALAKYKlvflgdqsvgktSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRslipsyirdsSVAVIVYDVasrqsflnttkwveevrtergsdviivlvgnktdlvdkrqvsIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVDVNLKSsntntsqsqpqsggcac
Low Complexity Region (SEG)
MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVDVNLKssntntsqsqpqsGGCAC
Disordered region (IsUnstruct)
*****ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP*************************************
Disordered Region (DISOPRED)
*****AL*KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA************************************GGCAC
Disordered Region (DISEMBL)
MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVDVNLKS*****************
Disordered Region (DISPRO)
*APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGM***********************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVDVNLKSSNTNTSQSQPQSGGCAC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	208	2.2.26 [Sep-21-2011]
O80501	208	Ras-related protein RABH1	yes	no	1.0	1.0	0.947	1e-114
Q9LFT9	207	Ras-related protein RABH1	no	no	0.995	1.0	0.884	1e-104
Q9SID8	207	Ras-related protein RABH1	no	no	0.995	1.0	0.836	8e-99
Q5RAV6	208	Ras-related protein Rab-6	yes	no	0.956	0.956	0.751	6e-88
P20340	208	Ras-related protein Rab-6	yes	no	0.956	0.956	0.751	6e-88
Q9WVB1	208	Ras-related protein Rab-6	yes	no	0.956	0.956	0.746	8e-88
P35279	208	Ras-related protein Rab-6	yes	no	0.956	0.956	0.746	8e-88
Q1KME6	208	Ras-related protein Rab-6	yes	no	0.956	0.956	0.741	2e-87
Q9SMR4	214	Ras-related protein RABH1	no	no	1.0	0.971	0.761	3e-87
P61294	208	Ras-related protein Rab-6	no	no	0.956	0.956	0.707	3e-84

>sp|O80501|RAH1B_ARATH Ras-related protein RABH1b OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1

 Score =  409 bits (1052), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/208 (94%), Positives = 203/208 (97%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKW++EVRTERGSDVI+VLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLV 120

Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180
           GNKTDLVDKRQVSIEE EAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK
Sbjct: 121 GNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180

Query: 181 QEDLVDVNLKSSNTNTSQSQPQSGGCAC 208
           QED+VDVNLKSSN N S +Q QSGGC+C
Sbjct: 181 QEDMVDVNLKSSNANASLAQQQSGGCSC 208

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER). Binds GTP and GDP and possesses intrinsic GTPase activity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFT9|RAH1E_ARATH Ras-related protein RABH1e OS=Arabidopsis thaliana GN=RABH1E PE=2 SV=1

 Score =  378 bits (971), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/208 (88%), Positives = 197/208 (94%), Gaps = 1/208 (0%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA VS LAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA+RQSFLNT+KW+E+VRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEDVRTERGSDVIIVLV 120

Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180
           GNKTDLVDKRQVSIEEG+ KAR+  V+FIETSAKAGFNIK LFRKIAAALPGMETLSSTK
Sbjct: 121 GNKTDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180

Query: 181 QEDLVDVNLKSSNTNTSQSQPQSGGCAC 208
           QED+VDVNLK+S +N++Q + Q GGCAC
Sbjct: 181 QEDMVDVNLKTS-SNSAQGEQQRGGCAC 207

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SID8|RAH1D_ARATH Ras-related protein RABH1d OS=Arabidopsis thaliana GN=RABH1D PE=3 SV=1

 Score =  359 bits (921), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 174/208 (83%), Positives = 188/208 (90%), Gaps = 1/208 (0%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA VS LAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVA+R SFLNT+KW+EEVR ER  DVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTSKWIEEVRNERAGDVIIVLV 120

Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180
           GNKTDLV+KRQVSIEEG++K RE  VMFIETSAKAGFNIK LFRKIAAALPGME+ S+TK
Sbjct: 121 GNKTDLVEKRQVSIEEGDSKGREYGVMFIETSAKAGFNIKPLFRKIAAALPGMESYSNTK 180

Query: 181 QEDLVDVNLKSSNTNTSQSQPQSGGCAC 208
            ED+VDVNLK + +N+SQ   Q G C+C
Sbjct: 181 NEDMVDVNLKPT-SNSSQGDQQGGACSC 207

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Arabidopsis thaliana (taxid: 3702)

>sp|Q5RAV6|RAB6A_PONAB Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6A PE=2 SV=3

 Score =  323 bits (827), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 154/205 (75%), Positives = 178/205 (86%), Gaps = 6/205 (2%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+VAV+VYD+ +  SF  TTKW+++VRTERGSDVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDL 184
           DL DKRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGME+     +ED+
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188

Query: 185 VDVNLKSSNTNTSQSQPQS-GGCAC 208
           +D+ L+       Q QP S GGC+C
Sbjct: 189 IDIKLEK-----PQEQPVSEGGCSC 208

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Pongo abelii (taxid: 9601)

>sp|P20340|RAB6A_HUMAN Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3

 Score =  323 bits (827), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 154/205 (75%), Positives = 178/205 (86%), Gaps = 6/205 (2%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+VAV+VYD+ +  SF  TTKW+++VRTERGSDVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDL 184
           DL DKRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGME+     +ED+
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188

Query: 185 VDVNLKSSNTNTSQSQPQS-GGCAC 208
           +D+ L+       Q QP S GGC+C
Sbjct: 189 IDIKLEK-----PQEQPVSEGGCSC 208

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER). Has a low GTPase activity.

Homo sapiens (taxid: 9606)

>sp|Q9WVB1|RAB6A_RAT Ras-related protein Rab-6A OS=Rattus norvegicus GN=Rab6a PE=2 SV=2

 Score =  322 bits (826), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 153/205 (74%), Positives = 177/205 (86%), Gaps = 6/205 (2%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+VAV+VYD+ +  SF  TTKW+++VRTERGSDVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDL 184
           DL DKRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGME+     +ED+
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188

Query: 185 VDVNLKSSNTNTSQSQP-QSGGCAC 208
           +D+ L+       Q QP   GGC+C
Sbjct: 189 IDIKLEK-----PQEQPVNEGGCSC 208

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Rattus norvegicus (taxid: 10116)

>sp|P35279|RAB6A_MOUSE Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4

 Score =  322 bits (826), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 153/205 (74%), Positives = 177/205 (86%), Gaps = 6/205 (2%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+VAV+VYD+ +  SF  TTKW+++VRTERGSDVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDL 184
           DL DKRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGME+     +ED+
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188

Query: 185 VDVNLKSSNTNTSQSQP-QSGGCAC 208
           +D+ L+       Q QP   GGC+C
Sbjct: 189 IDIKLEK-----PQEQPVNEGGCSC 208

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Mus musculus (taxid: 10090)

>sp|Q1KME6|RAB6A_CHICK Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3

 Score =  321 bits (823), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 152/205 (74%), Positives = 177/205 (86%), Gaps = 6/205 (2%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+ AV+VYD+ +  SF  TTKW+++VRTERGSDVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDL 184
           DL DKRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGME+     +ED+
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDKSREDM 188

Query: 185 VDVNLKSSNTNTSQSQPQS-GGCAC 208
           +D+ L+       Q QP S GGC+C
Sbjct: 189 IDIKLEK-----PQEQPVSEGGCSC 208

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Gallus gallus (taxid: 9031)

>sp|Q9SMR4|RAH1C_ARATH Ras-related protein RABH1c OS=Arabidopsis thaliana GN=RABH1C PE=1 SV=1

 Score =  320 bits (821), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 163/214 (76%), Positives = 182/214 (85%), Gaps = 6/214 (2%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA VS LAK+KLVFLGDQSVGKTSIITRFMYDKFD TYQ TIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MASVSPLAKFKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVL 119
           QLWDTAGQERFRSLIPSYIRDSSVA++VYDV++RQ+FLNT+KW+E+V  ERG S+VIIVL
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVL 120

Query: 120 VGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLS-S 178
           VGNKTDLV+KRQVSI EGE K +E  VMFIETSAK  FNIKALFRKIAAALPG+++ S +
Sbjct: 121 VGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKALFRKIAAALPGVDSYSLA 180

Query: 179 TKQEDLVDVNLK----SSNTNTSQSQPQSGGCAC 208
           TK +D+VDVNLK    SS           GGC+C
Sbjct: 181 TKSDDMVDVNLKTTSNSSQGEQQGGAGGGGGCSC 214

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Arabidopsis thaliana (taxid: 3702)

>sp|P61294|RAB6B_MOUSE Ras-related protein Rab-6B OS=Mus musculus GN=Rab6b PE=1 SV=1

 Score =  310 bits (795), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 145/205 (70%), Positives = 175/205 (85%), Gaps = 6/205 (2%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+VAV+VYD+ +  SF  T+KW+++VRTERGSDVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDL 184
           DL DKRQ++IEEGE +A+EL+VMFIETSAK G+N+K LFR++A+ALPGME +    +E +
Sbjct: 129 DLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGM 188

Query: 185 VDVNLKSSNTNTSQSQPQS-GGCAC 208
           +D+ L     +  Q  P S GGC+C
Sbjct: 189 IDIKL-----DKPQEPPASEGGCSC 208

Seems to have a role in retrograde membrane traffic at the level of the Golgi complex. May function in retrograde transport in neuronal cells.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
255571107	208	protein with unknown function [Ricinus c	1.0	1.0	0.975	1e-116
225453266	208	PREDICTED: ras-related protein RABH1b [V	1.0	1.0	0.961	1e-114
224067425	208	predicted protein [Populus trichocarpa]	1.0	1.0	0.951	1e-113
15224916	208	Ras-related protein RABH1B [Arabidopsis	1.0	1.0	0.947	1e-112
623586	208	putative [Nicotiana tabacum]	1.0	1.0	0.947	1e-111
449461547	208	PREDICTED: ras-related protein RABH1b-li	1.0	1.0	0.937	1e-111
255575776	208	protein with unknown function [Ricinus c	1.0	1.0	0.937	1e-111
357116841	293	PREDICTED: ras-related protein RABH1b-li	1.0	0.709	0.927	1e-111
224126375	208	predicted protein [Populus trichocarpa]	1.0	1.0	0.927	1e-110
226501020	208	ras-related protein Rab-6A [Zea mays] gi	1.0	1.0	0.923	1e-110

>gi|255571107|ref|XP_002526504.1| protein with unknown function [Ricinus communis] gi|223534179|gb|EEF35895.1| protein with unknown function [Ricinus communis]

 Score =  421 bits (1083), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/208 (97%), Positives = 207/208 (99%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNT+KW+EEVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTSKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180
           GNKTDLVDKRQVSIEEGEAKAR+LNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK
Sbjct: 121 GNKTDLVDKRQVSIEEGEAKARDLNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180

Query: 181 QEDLVDVNLKSSNTNTSQSQPQSGGCAC 208
           QED+VDVNLKSSNTN SQSQPQSGGCAC
Sbjct: 181 QEDMVDVNLKSSNTNASQSQPQSGGCAC 208

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453266|ref|XP_002266653.1| PREDICTED: ras-related protein RABH1b [Vitis vinifera]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/208 (96%), Positives = 205/208 (98%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNT KW+EEVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTAKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180
           GNKTDLVDKRQVSIEEGEAKAR+LNVMFIETSAKAGFNIKALFRKIAAALPGMETLSS K
Sbjct: 121 GNKTDLVDKRQVSIEEGEAKARDLNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSAK 180

Query: 181 QEDLVDVNLKSSNTNTSQSQPQSGGCAC 208
           QED+VDVNLKSSNTN SQSQPQ+GGC+C
Sbjct: 181 QEDMVDVNLKSSNTNASQSQPQAGGCSC 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067425|ref|XP_002302484.1| predicted protein [Populus trichocarpa] gi|222844210|gb|EEE81757.1| predicted protein [Populus trichocarpa]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/208 (95%), Positives = 205/208 (98%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAVIV+DVASRQSFLNT+KW+EEVR+ERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTSKWIEEVRSERGSDVIIVLV 120

Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180
           GNKTDLVDKRQVSIEEGEAKAR+LNVMFIETSAKAGFNIKALFRKIAAALPGMETLSS+K
Sbjct: 121 GNKTDLVDKRQVSIEEGEAKARDLNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSSK 180

Query: 181 QEDLVDVNLKSSNTNTSQSQPQSGGCAC 208
           QED+VDVNLKSSN N SQSQ QSGGCAC
Sbjct: 181 QEDMVDVNLKSSNANASQSQQQSGGCAC 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224916|ref|NP_181989.1| Ras-related protein RABH1B [Arabidopsis thaliana] gi|297828175|ref|XP_002881970.1| hypothetical protein ARALYDRAFT_903887 [Arabidopsis lyrata subsp. lyrata] gi|75318653|sp|O80501.1|RAH1B_ARATH RecName: Full=Ras-related protein RABH1b; Short=AtRABH1b; AltName: Full=Ras-related protein Rab6A; Short=AtRab6A gi|3341681|gb|AAC27463.1| putative small GTP-binding protein [Arabidopsis thaliana] gi|21593488|gb|AAM65455.1| putative small GTP-binding protein [Arabidopsis thaliana] gi|107738267|gb|ABF83670.1| At2g44610 [Arabidopsis thaliana] gi|110742258|dbj|BAE99055.1| putative small GTP-binding protein [Arabidopsis thaliana] gi|297327809|gb|EFH58229.1| hypothetical protein ARALYDRAFT_903887 [Arabidopsis lyrata subsp. lyrata] gi|330255353|gb|AEC10447.1| Ras-related protein RABH1B [Arabidopsis thaliana] gi|741994|prf||2008312A GTP-binding protein

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/208 (94%), Positives = 203/208 (97%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKW++EVRTERGSDVI+VLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLV 120

Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180
           GNKTDLVDKRQVSIEE EAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK
Sbjct: 121 GNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180

Query: 181 QEDLVDVNLKSSNTNTSQSQPQSGGCAC 208
           QED+VDVNLKSSN N S +Q QSGGC+C
Sbjct: 181 QEDMVDVNLKSSNANASLAQQQSGGCSC 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|623586|gb|AAA74117.1| putative [Nicotiana tabacum]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/208 (94%), Positives = 201/208 (96%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTV L
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVAL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNT+KW+EEVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTSKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180
           GNKTDLV+KRQVSIEE EAKARELNVMFIETSAKAGFNIK LFRKIAAALPGMETLSS K
Sbjct: 121 GNKTDLVEKRQVSIEEAEAKARELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSAK 180

Query: 181 QEDLVDVNLKSSNTNTSQSQPQSGGCAC 208
           QED+VDVNLKSSN N SQSQ QSGGCAC
Sbjct: 181 QEDMVDVNLKSSNANASQSQAQSGGCAC 208

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461547|ref|XP_004148503.1| PREDICTED: ras-related protein RABH1b-like [Cucumis sativus] gi|449528471|ref|XP_004171228.1| PREDICTED: ras-related protein RABH1b-like [Cucumis sativus]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/208 (93%), Positives = 203/208 (97%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAP SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPTSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ+FLNT+KW+EEVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTSKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180
           GNKTDLV+KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK
Sbjct: 121 GNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180

Query: 181 QEDLVDVNLKSSNTNTSQSQPQSGGCAC 208
           QED+VDVNLKS+ +  +QSQPQS GCAC
Sbjct: 181 QEDMVDVNLKSTGSGAAQSQPQSSGCAC 208

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575776|ref|XP_002528787.1| protein with unknown function [Ricinus communis] gi|223531790|gb|EEF33609.1| protein with unknown function [Ricinus communis]

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/208 (93%), Positives = 204/208 (98%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAVIV+DVASRQ+FLNT+KW+EEVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQTFLNTSKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180
           GNKTDLV+KRQVSIEEGEAKAR+LNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK
Sbjct: 121 GNKTDLVEKRQVSIEEGEAKARDLNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180

Query: 181 QEDLVDVNLKSSNTNTSQSQPQSGGCAC 208
           QED+VDVNLKS++   SQSQ QSGGCAC
Sbjct: 181 QEDMVDVNLKSTSKTASQSQAQSGGCAC 208

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357116841|ref|XP_003560185.1| PREDICTED: ras-related protein RABH1b-like [Brachypodium distachyon]

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/208 (92%), Positives = 202/208 (97%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 86  MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 145

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAVIV+DVASRQSFLNT+KW+EEVRTERGSDVIIVLV
Sbjct: 146 QLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTSKWIEEVRTERGSDVIIVLV 205

Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180
           GNKTDLVDKRQVSIEEGE KA++L VMFIETSAKAGFNIKALFRKIAAALPGMETLSS K
Sbjct: 206 GNKTDLVDKRQVSIEEGEGKAKDLGVMFIETSAKAGFNIKALFRKIAAALPGMETLSSAK 265

Query: 181 QEDLVDVNLKSSNTNTSQSQPQSGGCAC 208
           QED+VDVNLKS N N+SQSQ Q+GGC+C
Sbjct: 266 QEDMVDVNLKSGNANSSQSQAQAGGCSC 293

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126375|ref|XP_002329538.1| predicted protein [Populus trichocarpa] gi|222870247|gb|EEF07378.1| predicted protein [Populus trichocarpa]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/208 (92%), Positives = 202/208 (97%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT+RL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTIRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAVIV+DVASRQSFLNT+KW+EEVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTSKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180
           GNKTDLV+KRQVSIEEGEAKARELNVMFIETSAKAGFNIK LFRKIAAALPGME LSSTK
Sbjct: 121 GNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKPLFRKIAAALPGMEALSSTK 180

Query: 181 QEDLVDVNLKSSNTNTSQSQPQSGGCAC 208
           QED+VDVNLKS+  + SQ+Q QSGGCAC
Sbjct: 181 QEDMVDVNLKSTGGSASQNQAQSGGCAC 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226501020|ref|NP_001150271.1| ras-related protein Rab-6A [Zea mays] gi|242045718|ref|XP_002460730.1| hypothetical protein SORBIDRAFT_02g033930 [Sorghum bicolor] gi|194701460|gb|ACF84814.1| unknown [Zea mays] gi|195637990|gb|ACG38463.1| ras-related protein Rab-6A [Zea mays] gi|241924107|gb|EER97251.1| hypothetical protein SORBIDRAFT_02g033930 [Sorghum bicolor] gi|414590332|tpg|DAA40903.1| TPA: Ras protein Rab-6A [Zea mays]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/208 (92%), Positives = 202/208 (97%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAVIV+DVASRQSFLNT+KW+EEVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTSKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180
           GNKTDLVDKRQVSIEEGE KA++L VMFIETSAKAGFNIKALFRKIAAALPGMETLSS K
Sbjct: 121 GNKTDLVDKRQVSIEEGEGKAKDLGVMFIETSAKAGFNIKALFRKIAAALPGMETLSSAK 180

Query: 181 QEDLVDVNLKSSNTNTSQSQPQSGGCAC 208
           QED+VDVNL+S N N+SQSQ Q+GGC+C
Sbjct: 181 QEDMVDVNLRSGNANSSQSQAQAGGCSC 208

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
TAIR|locus:2042321	208	RAB6A [Arabidopsis thaliana (t	1.0	1.0	0.908	1.2e-95
TAIR|locus:2145392	207	RABH1e "RAB GTPase homolog H1E	0.995	1.0	0.865	1.7e-89
TAIR|locus:2060415	207	RABH1d "RAB GTPase homolog H1D	0.995	1.0	0.817	1.3e-84
TAIR|locus:2140045	214	RABH1c "RAB GTPase homolog H1C	1.0	0.971	0.752	5.4e-79
UNIPROTKB|P20340	208	RAB6A "Ras-related protein Rab	0.951	0.951	0.742	2.1e-77
UNIPROTKB|Q5RAV6	208	RAB6A "Ras-related protein Rab	0.951	0.951	0.742	2.1e-77
MGI|MGI:894313	208	Rab6a "RAB6A, member RAS oncog	0.951	0.951	0.742	2.7e-77
RGD|619737	208	Rab6a "RAB6A, member RAS oncog	0.951	0.951	0.742	2.7e-77
UNIPROTKB|Q1KME6	208	RAB6A "Ras-related protein Rab	0.951	0.951	0.732	7.1e-77
UNIPROTKB|F1MBF6	208	RAB6A "Uncharacterized protein	0.951	0.951	0.732	7.1e-77

TAIR|locus:2042321 RAB6A [Arabidopsis thaliana (taxid:3702)]

 Score = 951 (339.8 bits), Expect = 1.2e-95, P = 1.2e-95
 Identities = 189/208 (90%), Positives = 194/208 (93%)

Query:     1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
             MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct:     1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query:    61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
             QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKW++EVRTERGSDVI+VLV
Sbjct:    61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLV 120

Query:   121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180
             GNKTDLVDKRQVSIEE EAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK
Sbjct:   121 GNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180

Query:   181 QEDLVDVNLKXXXXXXXXXXXXXGGCAC 208
             QED+VDVNLK             GGC+C
Sbjct:   181 QEDMVDVNLKSSNANASLAQQQSGGCSC 208

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0032940 "secretion by cell" evidence=IGI

TAIR|locus:2145392 RABH1e "RAB GTPase homolog H1E" [Arabidopsis thaliana (taxid:3702)]

 Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
 Identities = 180/208 (86%), Positives = 188/208 (90%)

Query:     1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
             MA VS LAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRTVRL
Sbjct:     1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60

Query:    61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
             QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA+RQSFLNT+KW+E+VRTERGSDVIIVLV
Sbjct:    61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEDVRTERGSDVIIVLV 120

Query:   121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180
             GNKTDLVDKRQVSIEEG+ KAR+  V+FIETSAKAGFNIK LFRKIAAALPGMETLSSTK
Sbjct:   121 GNKTDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180

Query:   181 QEDLVDVNLKXXXXXXXXXXXXXGGCAC 208
             QED+VDVNLK             GGCAC
Sbjct:   181 QEDMVDVNLKTSSNSAQGEQQR-GGCAC 207

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

TAIR|locus:2060415 RABH1d "RAB GTPase homolog H1D" [Arabidopsis thaliana (taxid:3702)]

 Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
 Identities = 170/208 (81%), Positives = 181/208 (87%)

Query:     1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
             MA VS LAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRTVRL
Sbjct:     1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60

Query:    61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
             QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVA+R SFLNT+KW+EEVR ER  DVIIVLV
Sbjct:    61 QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTSKWIEEVRNERAGDVIIVLV 120

Query:   121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180
             GNKTDLV+KRQVSIEEG++K RE  VMFIETSAKAGFNIK LFRKIAAALPGME+ S+TK
Sbjct:   121 GNKTDLVEKRQVSIEEGDSKGREYGVMFIETSAKAGFNIKPLFRKIAAALPGMESYSNTK 180

Query:   181 QEDLVDVNLKXXXXXXXXXXXXXGGCAC 208
              ED+VDVNLK             G C+C
Sbjct:   181 NEDMVDVNLKPTSNSSQGDQQG-GACSC 207

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2140045 RABH1c "RAB GTPase homolog H1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
 Identities = 161/214 (75%), Positives = 180/214 (84%)

Query:     1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
             MA VS LAK+KLVFLGDQSVGKTSIITRFMYDKFD TYQ TIGIDFLSKTMYLEDRTVRL
Sbjct:     1 MASVSPLAKFKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRL 60

Query:    61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVL 119
             QLWDTAGQERFRSLIPSYIRDSSVA++VYDV++RQ+FLNT+KW+E+V  ERG S+VIIVL
Sbjct:    61 QLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVL 120

Query:   120 VGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLS-S 178
             VGNKTDLV+KRQVSI EGE K +E  VMFIETSAK  FNIKALFRKIAAALPG+++ S +
Sbjct:   121 VGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKALFRKIAAALPGVDSYSLA 180

Query:   179 TKQEDLVDVNLKXXXXXXXXX----XXXXGGCAC 208
             TK +D+VDVNLK                 GGC+C
Sbjct:   181 TKSDDMVDVNLKTTSNSSQGEQQGGAGGGGGCSC 214

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0006984 "ER-nucleus signaling pathway" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

UNIPROTKB|P20340 RAB6A "Ras-related protein Rab-6A" [Homo sapiens (taxid:9606)]

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 150/202 (74%), Positives = 173/202 (85%)

Query:     7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
             L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA
Sbjct:    11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 70

Query:    67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
             GQERFRSLIPSYIRDS+VAV+VYD+ +  SF  TTKW+++VRTERGSDVII+LVGNKTDL
Sbjct:    71 GQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130

Query:   127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVD 186
              DKRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGME+     +ED++D
Sbjct:   131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMID 190

Query:   187 VNLKXXXXXXXXXXXXXGGCAC 208
             + L+             GGC+C
Sbjct:   191 IKLEKPQEQPVSE----GGCSC 208

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000042 "protein targeting to Golgi" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0018125 "peptidyl-cysteine methylation" evidence=IDA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0034067 "protein localization to Golgi apparatus" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0072385 "minus-end-directed organelle transport along microtubule" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=IDA;TAS

UNIPROTKB|Q5RAV6 RAB6A "Ras-related protein Rab-6A" [Pongo abelii (taxid:9601)]

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 150/202 (74%), Positives = 173/202 (85%)

Query:     7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
             L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA
Sbjct:    11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 70

Query:    67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
             GQERFRSLIPSYIRDS+VAV+VYD+ +  SF  TTKW+++VRTERGSDVII+LVGNKTDL
Sbjct:    71 GQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130

Query:   127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVD 186
              DKRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGME+     +ED++D
Sbjct:   131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMID 190

Query:   187 VNLKXXXXXXXXXXXXXGGCAC 208
             + L+             GGC+C
Sbjct:   191 IKLEKPQEQPVSE----GGCSC 208

GO:0000042 "protein targeting to Golgi" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

MGI|MGI:894313 Rab6a "RAB6A, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
 Identities = 150/202 (74%), Positives = 173/202 (85%)

Query:     7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
             L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA
Sbjct:    11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 70

Query:    67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
             GQERFRSLIPSYIRDS+VAV+VYD+ +  SF  TTKW+++VRTERGSDVII+LVGNKTDL
Sbjct:    71 GQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130

Query:   127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVD 186
              DKRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGME+     +ED++D
Sbjct:   131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMID 190

Query:   187 VNLKXXXXXXXXXXXXXGGCAC 208
             + L+             GGC+C
Sbjct:   191 IKLEKPQEQPVNE----GGCSC 208

GO:0000042 "protein targeting to Golgi" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001671 "ATPase activator activity" evidence=ISO

GO:0003924 "GTPase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO;IDA

GO:0005802 "trans-Golgi network" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0018125 "peptidyl-cysteine methylation" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=ISO

GO:0032781 "positive regulation of ATPase activity" evidence=ISO

GO:0034067 "protein localization to Golgi apparatus" evidence=ISO

GO:0051117 "ATPase binding" evidence=ISO

RGD|619737 Rab6a "RAB6A, member RAS oncogene family" [Rattus norvegicus (taxid:10116)]

 Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
 Identities = 150/202 (74%), Positives = 173/202 (85%)

Query:     7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
             L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA
Sbjct:    11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 70

Query:    67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
             GQERFRSLIPSYIRDS+VAV+VYD+ +  SF  TTKW+++VRTERGSDVII+LVGNKTDL
Sbjct:    71 GQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130

Query:   127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVD 186
              DKRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGME+     +ED++D
Sbjct:   131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMID 190

Query:   187 VNLKXXXXXXXXXXXXXGGCAC 208
             + L+             GGC+C
Sbjct:   191 IKLEKPQEQPVNE----GGCSC 208

GO:0000042 "protein targeting to Golgi" evidence=ISO;ISS

GO:0000139 "Golgi membrane" evidence=IEA

GO:0001671 "ATPase activator activity" evidence=IMP;IDA

GO:0003924 "GTPase activity" evidence=ISO;ISS;TAS

GO:0005525 "GTP binding" evidence=IEA;ISO;ISS;IDA

GO:0005794 "Golgi apparatus" evidence=ISO;ISS;IDA

GO:0005802 "trans-Golgi network" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006184 "GTP catabolic process" evidence=ISO;ISS;TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=ISO;IDA

GO:0018125 "peptidyl-cysteine methylation" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=ISO

GO:0032482 "Rab protein signal transduction" evidence=IC

GO:0032781 "positive regulation of ATPase activity" evidence=IDA

GO:0034067 "protein localization to Golgi apparatus" evidence=ISO

GO:0048193 "Golgi vesicle transport" evidence=TAS

GO:0051117 "ATPase binding" evidence=IPI

UNIPROTKB|Q1KME6 RAB6A "Ras-related protein Rab-6A" [Gallus gallus (taxid:9031)]

 Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
 Identities = 148/202 (73%), Positives = 172/202 (85%)

Query:     7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
             L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTA
Sbjct:    11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 70

Query:    67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
             GQERFRSLIPSYIRDS+ AV+VYD+ +  SF  TTKW+++VRTERGSDVII+LVGNKTDL
Sbjct:    71 GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130

Query:   127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVD 186
              DKRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGME+     +ED++D
Sbjct:   131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDKSREDMID 190

Query:   187 VNLKXXXXXXXXXXXXXGGCAC 208
             + L+             GGC+C
Sbjct:   191 IKLEKPQEQPVSE----GGCSC 208

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0000042 "protein targeting to Golgi" evidence=ISS

UNIPROTKB|F1MBF6 RAB6A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
 Identities = 148/202 (73%), Positives = 172/202 (85%)

Query:     7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
             L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTA
Sbjct:    11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 70

Query:    67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
             GQERFRSLIPSYIRDS+ AV+VYD+ +  SF  TTKW+++VRTERGSDVII+LVGNKTDL
Sbjct:    71 GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130

Query:   127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVD 186
              DKRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGME+     +ED++D
Sbjct:   131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMID 190

Query:   187 VNLKXXXXXXXXXXXXXGGCAC 208
             + L+             GGC+C
Sbjct:   191 IKLEKPQEQPVSE----GGCSC 208

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1KME6	RAB6A_CHICK	No assigned EC number	0.7414	0.9567	0.9567	yes	no
P61294	RAB6B_MOUSE	No assigned EC number	0.7073	0.9567	0.9567	no	no
P34213	RAB6A_CAEEL	No assigned EC number	0.7205	0.9567	0.9707	yes	no
P35279	RAB6A_MOUSE	No assigned EC number	0.7463	0.9567	0.9567	yes	no
Q9SID8	RAH1D_ARATH	No assigned EC number	0.8365	0.9951	1.0	no	no
A6QR46	RAB6B_BOVIN	No assigned EC number	0.7073	0.9567	0.9567	no	no
O80501	RAH1B_ARATH	No assigned EC number	0.9471	1.0	1.0	yes	no
Q55FK2	RAB6_DICDI	No assigned EC number	0.7932	0.8605	0.8605	yes	no
Q22782	RAB6B_CAEEL	No assigned EC number	0.8047	0.8125	0.8243	no	no
Q5RAV6	RAB6A_PONAB	No assigned EC number	0.7512	0.9567	0.9567	yes	no
P17608	RYH1_SCHPO	No assigned EC number	0.7044	0.9326	0.9651	yes	no
Q9WVB1	RAB6A_RAT	No assigned EC number	0.7463	0.9567	0.9567	yes	no
Q99260	YPT6_YEAST	No assigned EC number	0.6103	0.9567	0.9255	yes	no
P20340	RAB6A_HUMAN	No assigned EC number	0.7512	0.9567	0.9567	yes	no
Q9NRW1	RAB6B_HUMAN	No assigned EC number	0.7073	0.9567	0.9567	no	no
Q9LFT9	RAH1E_ARATH	No assigned EC number	0.8846	0.9951	1.0	no	no
Q9SMR4	RAH1C_ARATH	No assigned EC number	0.7616	1.0	0.9719	no	no
Q9LV79	RAH1A_ARATH	No assigned EC number	0.7587	0.9567	0.9660	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	208
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	1e-115
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-82
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	3e-82
pfam00071	162	pfam00071, Ras, Ras family	4e-78
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	4e-73
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	8e-71
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	8e-61
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	6e-57
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	9e-56
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	3e-55
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	1e-54
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	3e-51
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-50
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-49
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	2e-49
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	3e-46
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-45
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	4e-45
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	3e-44
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	1e-43
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	3e-43
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	5e-43
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	6e-43
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	9e-43
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	1e-42
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	2e-42
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	5e-42
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	1e-41
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	3e-40
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	4e-40
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	6e-40
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	1e-39
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	1e-37
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	7e-37
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	6e-36
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	3e-35
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	5e-35
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	1e-34
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	1e-33
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	1e-33
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	1e-33
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	7e-33
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	8e-33
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	1e-32
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	2e-31
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	2e-30
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	4e-30
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-29
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	2e-29
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	4e-29
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	6e-28
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	6e-28
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	1e-27
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	2e-27
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	1e-26
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-26
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	2e-26
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	4e-26
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	7e-26
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	1e-25
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-25
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-25
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	9e-25
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	1e-24
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	4e-24
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	2e-23
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	1e-22
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	2e-22
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-22
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	3e-22
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	5e-22
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	8e-22
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	9e-22
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	1e-20
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-19
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	2e-19
pfam08477	116	pfam08477, Miro, Miro-like protein	2e-19
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	3e-17
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	3e-17
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	2e-16
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	7e-14
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	9e-14
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	2e-13
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	5e-13
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	6e-13
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	8e-13
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	1e-11
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	7e-11
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	3e-10
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	7e-09
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	4e-08
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	8e-08
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	4e-07
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	5e-07
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	2e-06
cd00880	161	cd00880, Era_like, E	4e-06
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	1e-05
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	3e-05
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	5e-05
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	6e-05
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	6e-05
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	1e-04
pfam02421	190	pfam02421, FeoB_N, Ferrous iron transport protein	2e-04
TIGR03918	391	TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster	4e-04
cd01895	174	cd01895, EngA2, EngA2 GTPase contains the second d	4e-04
COG2262	411	COG2262, HflX, GTPases [General function predictio	5e-04
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	6e-04
cd01879	159	cd01879, FeoB, Ferrous iron transport protein B (F	8e-04
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	0.001
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	0.001
cd01878	204	cd01878, HflX, HflX GTPase family	0.001
PRK00089	292	PRK00089, era, GTPase Era; Reviewed	0.002
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	0.002
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	0.002
cd04105	202	cd04105, SR_beta, Signal recognition particle rece	0.003
cd04163	168	cd04163, Era, E	0.003
PRK05291	449	PRK05291, trmE, tRNA modification GTPase TrmE; Rev	0.003

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  325 bits (836), Expect = e-115
 Identities = 133/161 (82%), Positives = 147/161 (91%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLVFLGDQSVGKTSIITRFMYD FDN YQATIGIDFLSKTMY++D+TVRLQLWDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFRSLIPSYIRDSSVAV+VYD+ +RQSF NT KW+++VR ERG+DVIIVLVGNKTDL DK
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           RQVS EEGE KA+E N MFIETSAKAG N+K LF+KIA AL
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  242 bits (620), Expect = 1e-82
 Identities = 75/158 (47%), Positives = 114/158 (72%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD  VGK+S+++RF   KF   Y++TIG+DF +KT+ ++ + V+LQ+WDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFRS+  SY R +  A++VYD+ +R+SF N   W++E+R     +V+I+LVGNK+DL ++
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQ 120

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           RQVS EE EA A E  + F ETSAK   N++  F ++A
Sbjct: 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELA 158

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  241 bits (617), Expect = 3e-82
 Identities = 78/158 (49%), Positives = 114/158 (72%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGKTS++ RF+ +KF   Y++TIG+DF SKT+ ++ + V+LQ+WDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFRS+  SY R +  A++VYDV +R+SF N  KW+ E++     ++ I+LVGNK+DL D+
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           RQVS EE +  A+E  ++F ETSAK G N+   F  +A
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLA 158

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  230 bits (590), Expect = 4e-78
 Identities = 82/161 (50%), Positives = 112/161 (69%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV +GD  VGK+S++ RF  +KF   Y  TIG+DF +KT+ ++ +TV+LQ+WDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
           FR+L P Y R +   ++VYD+ SR SF N  KW+EE+      +V IVLVGNK DL D+R
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
            VS EEGEA A+EL + F+ETSAK   N++  F ++A  + 
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREIL 161

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  218 bits (557), Expect = 4e-73
 Identities = 110/179 (61%), Positives = 138/179 (77%), Gaps = 3/179 (1%)

Query: 30  MYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89
           MYD FDN YQ+TIGIDFLSKT+YL++  VRLQLWDTAGQERFRSLIPSYIRDS+ A++VY
Sbjct: 1   MYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVY 60

Query: 90  DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFI 149
           D+ +RQSF NTTKW++++  ERG DVII LVGNKTDL D R+V+ EEG  KA+E N MF 
Sbjct: 61  DITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFH 120

Query: 150 ETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVDVNLKSSNTNTSQSQPQSGGCAC 208
           ETSAKAG NIK LF+KIAA LP ++  S++   ++VD+ L  +N + +  +     C C
Sbjct: 121 ETSAKAGHNIKVLFKKIAAKLPNLDN-SNSNDANVVDIQL--TNNSNANDKNMLSKCMC 176

Length = 176

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  212 bits (542), Expect = 8e-71
 Identities = 79/163 (48%), Positives = 114/163 (69%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV LGD SVGK+SI+ RF+ ++F    ++TIG  FL++T+ L+D TV+ ++WDTAGQ
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           ER+RSL P Y R ++ A++VYD+ S +SF     WV+E++     +++I L GNK DL  
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLES 120

Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
           KRQVS EE +  A E  ++F+ETSAK G N+  LF +IA  LP
Sbjct: 121 KRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  187 bits (476), Expect = 8e-61
 Identities = 64/161 (39%), Positives = 102/161 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R++ +KF+  +++T    F  KT+ +  + + L +WDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+ +L P Y RD+  A++VYD+    SF    KW++E++  RG+++ +V+VGNK DL  +
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           R VS  E E  A+ +     ETSAK G  I+ LF  +A  +
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  176 bits (450), Expect = 6e-57
 Identities = 61/157 (38%), Positives = 112/157 (71%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++T+ ++ +T++ Q+WDTAGQE
Sbjct: 4   FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A++VYD+  + +F N  +W++E+R    S+++I+LVGNK+DL   
Sbjct: 64  RYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL 123

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           R V  EE +A A +  + FIETSA  G N++  F+++
Sbjct: 124 RAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  174 bits (443), Expect = 9e-56
 Identities = 71/158 (44%), Positives = 105/158 (66%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D F+ ++ +TIGIDF  +T+ L+ + ++LQ+WDTAGQE
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  SY R +   ++VYD+   +SF N   W+  +      DV  +LVGNK D+ +K
Sbjct: 64  RFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDMEEK 123

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           R VS EEGEA ARE  + F+ETSAKA  N++  F  +A
Sbjct: 124 RVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLA 161

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  172 bits (439), Expect = 3e-55
 Identities = 68/159 (42%), Positives = 102/159 (64%), Gaps = 2/159 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ +GD  VGK+S++ RF  D FD    +TIG+DF  KT+ ++ + V+L +WDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRT-ERGSDVIIVLVGNKTDLVD 128
           RFR+L  SY R +   ++VYDV  R +F N   W+ E+ T     D + +LVGNK D  +
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120

Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
            R+V+ EEG+  AR+ N++FIETSAK    ++  F ++ 
Sbjct: 121 -REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELV 158

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  171 bits (435), Expect = 1e-54
 Identities = 69/161 (42%), Positives = 105/161 (65%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +TV+LQ+WDTAGQE
Sbjct: 3   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQE 62

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  SY R +   +IVYDV  ++SF N  +W++E+      +V  +LVGNK DL DK
Sbjct: 63  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDK 122

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           + V   E +  A EL + F+ETSAK   N++  F  +A  +
Sbjct: 123 KVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  162 bits (412), Expect = 3e-51
 Identities = 66/158 (41%), Positives = 104/158 (65%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G    GK+ ++ +F+ +KF      TIG++F S+ + +  ++V+LQ+WDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFRS+  SY R ++ A++VYD+ SR+SF   T W+ + RT    D++I+LVGNK DL D 
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           R+V+  E    A+E  ++F+ETSA  G N++  F K A
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCA 158

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  161 bits (409), Expect = 1e-50
 Identities = 66/162 (40%), Positives = 102/162 (62%), Gaps = 1/162 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT ++ RF    F      TIG+DF  KT+ ++ + V+LQ+WDTAGQE
Sbjct: 4   FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  SY R ++ A+I YD+  R SF +   W+EEV     S+V+++L+GNK DL ++
Sbjct: 64  RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123

Query: 130 RQVSIEEGEAKARELNVMF-IETSAKAGFNIKALFRKIAAAL 170
           R+V  EE    A    ++  +ETSAK   N++  F  +A  L
Sbjct: 124 REVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  158 bits (402), Expect = 1e-49
 Identities = 65/158 (41%), Positives = 90/158 (56%), Gaps = 2/158 (1%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV LG   VGK+++  RF+  +F   Y  TI  D   K + ++  T  L + DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDK 129
           F ++   YIR+    ++VY + SR+SF       E++   +  + + IVLVGNK DL ++
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           RQVS EEGEA A E    F+ETSAK   NI  LF  + 
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLV 157

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  158 bits (401), Expect = 2e-49
 Identities = 65/161 (40%), Positives = 108/161 (67%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 5   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 64

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
            FRS+  SY R ++ A++VYD+  R++F + T W+E+ R    S++ I+L+GNK DL  +
Sbjct: 65  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESR 124

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           R+VS EEGEA ARE  ++F+ETSAK   N++  F   A  +
Sbjct: 125 REVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 165

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  150 bits (380), Expect = 3e-46
 Identities = 67/163 (41%), Positives = 100/163 (61%), Gaps = 5/163 (3%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V LQ+WDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVR----TERGSDVIIVLVGNKTD 125
           RF+SL  ++ R +   V+VYDV + +SF +   W +E           +   V++GNK D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 126 LVDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALFRKIA 167
           L +KRQVS ++ +   +    + + ETSAK   N+   F  IA
Sbjct: 121 LEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIA 163

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  148 bits (375), Expect = 2e-45
 Identities = 69/162 (42%), Positives = 105/162 (64%), Gaps = 1/162 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +K++ +GD  VGKT ++ RF    F   ++ AT+GI F +K + ++   V+LQ+WDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           ERFRS+  +Y RD+   +++YDV ++ SF N   W+ E+     SDV+I+L+GNK D+  
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           +R V  E+GE  A+E  V F+ETSAK G N++  F  +A  L
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  148 bits (376), Expect = 4e-45
 Identities = 65/161 (40%), Positives = 107/161 (66%), Gaps = 2/161 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAG 67
           +++L+ +GD +VGK+S++ RF   +F      T+G+DF S+ + +E    ++LQLWDTAG
Sbjct: 2   QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAG 61

Query: 68  QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKTDL 126
           QERFRS+  SY R+S   ++V+D+ +R+SF +   W+EE R+  +    + +LVG+K DL
Sbjct: 62  QERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL 121

Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
             +RQV+ EE E  A++L + +IETSA+ G N++  F  + 
Sbjct: 122 ESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLT 162

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  146 bits (370), Expect = 3e-44
 Identities = 78/218 (35%), Positives = 109/218 (50%), Gaps = 21/218 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++K+V LGD  VGKT+++ R + D+F   Y  TIG    +KT+    R ++LQLWDTAGQ
Sbjct: 5   EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ 64

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFL-NTTKWVEEVRTERGSDVIIVLVGNKTDLV 127
           E +RSL P Y R ++  +IVYD   R+S    T +W+EE+R     DV I+LVGNK DL 
Sbjct: 65  EEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLF 124

Query: 128 DKRQVSIEEGEAKAREL---------------NVMFIETSAKA--GFNIKALFRKIAAAL 170
           D++  S E      RE+               N   +ETSAK+  G N+  LF+++   L
Sbjct: 125 DEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKL 184

Query: 171 PGMETLSSTKQEDLVDVNLKSSNTNTSQSQPQSGGCAC 208
                    K E          N    Q+   S  C  
Sbjct: 185 LEEIEKLVLKNELRQLD---RLNNPIEQAALASFNCVL 219

Length = 219

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  143 bits (362), Expect = 1e-43
 Identities = 62/157 (39%), Positives = 101/157 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+ SVGKTS + R+  D F + + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQE
Sbjct: 2   FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQE 61

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +   +++YD+ + +SF     W  +++T    +  ++LVGNK D+ D+
Sbjct: 62  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           R VS E G   A +L   F E SAK   N+K +F ++
Sbjct: 122 RVVSAERGRQLADQLGFEFFEASAKENINVKQVFERL 158

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  143 bits (363), Expect = 3e-43
 Identities = 70/209 (33%), Positives = 119/209 (56%), Gaps = 18/209 (8%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++++ ++LQ+WDTAGQE
Sbjct: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
            FRS+  SY R ++ A++VYD+  R++F +   W+E+ R    +++ I+L+GNK DL  +
Sbjct: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVDVNL 189
           R VS EEGE  A+E  ++F+E SAK   N++  F K AA       +    Q+ + DV+ 
Sbjct: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA------KIYKKIQDGVFDVSN 180

Query: 190 KSSNTNTSQSQP------------QSGGC 206
           +S                      Q GGC
Sbjct: 181 ESYGIKVGYGAIPGASGGRDGTSSQGGGC 209

Length = 210

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  141 bits (359), Expect = 5e-43
 Identities = 62/156 (39%), Positives = 87/156 (55%), Gaps = 2/156 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YKLV LG   VGK+++  +F+   F + Y  TI  D   K + ++     L + DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTDLVD 128
            F ++   Y+R     ++VY +  RQSF    K+ E++ R +   DV IVLVGNK DL  
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119

Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFR 164
           +R VS EEG+  AR+    F+ETSAK   N+   F 
Sbjct: 120 ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFY 155

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  141 bits (358), Expect = 6e-43
 Identities = 63/161 (39%), Positives = 101/161 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ ++   ++LQ+WDTAGQE
Sbjct: 8   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFRS+  SY R ++  ++ YD+   +SF    +W+ E+     + VI +LVGNK DL ++
Sbjct: 68  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER 127

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           R+VS +  E  +   ++ ++ETSAK   N++ LF  +A  L
Sbjct: 128 REVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  142 bits (359), Expect = 9e-43
 Identities = 64/204 (31%), Positives = 97/204 (47%), Gaps = 10/204 (4%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQ 68
           +K++ +GD  VGKTSII R+++  F   Y+ATIG+DF  K +  +  T VRLQLWD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEE----VRTERGSDVIIVLVGNKT 124
           ERF  +   Y + +  A+IV+DV    +F    KW  +    V    G  +  +L+ NK 
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 125 DLVDKR-QVSIEEGEAKARELN-VMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQE 182
           DL  +R     E+ +   +E   + + ETSAK   NI+   R +      +       Q 
Sbjct: 121 DLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKN---ILKNDKGLQS 177

Query: 183 DLVDVNLKSSNTNTSQSQPQSGGC 206
              D +        + +      C
Sbjct: 178 PEPDEDNVIDLKQETTTSKSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  140 bits (356), Expect = 1e-42
 Identities = 62/156 (39%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YKLV LG   VGK+++  +F+   F + Y  TI  D   K + ++     L + DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTDLVD 128
            F ++   Y+R     ++VY +  RQSF    K+ E++ R +   DV IVLVGNK DL +
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDLEN 121

Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFR 164
           +R VS EEG+  AR+    F+ETSAK   N+   F 
Sbjct: 122 ERVVSTEEGKELARQWGCPFLETSAKERINVDEAFY 157

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  141 bits (358), Expect = 2e-42
 Identities = 63/157 (40%), Positives = 110/157 (70%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK++I++RF  ++F    ++TIG++F ++T+ +E +TV+ Q+WDTAGQE
Sbjct: 13  FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A++VYD+  RQ+F N  +W+ E+R    S+++I++ GNK+DL   
Sbjct: 73  RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHL 132

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           R V+ E+G+A A +  + F+ETSA    N++  F+ I
Sbjct: 133 RSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTI 169

Length = 216

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  139 bits (351), Expect = 5e-42
 Identities = 57/158 (36%), Positives = 99/158 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   KF      TIG++F ++ + +  + ++LQ+WDTAGQE
Sbjct: 3   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  SY R ++ A++VYD+  R ++ + + W+ + R     + +I L+GNK DL  +
Sbjct: 63  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           R V+ EE +  A E  ++F+E SAK G N++  F + A
Sbjct: 123 RDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA 160

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  137 bits (348), Expect = 1e-41
 Identities = 64/160 (40%), Positives = 95/160 (59%), Gaps = 3/160 (1%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAGQ 68
           K++ +G+ +VGK+S+I RF+   F   Y+ TIG+DFL K ++L      VRL LWDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           E F ++  +Y R +   ++V+    R+SF     W E+V  E G D+ +VLV  K DL+D
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLD 120

Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA 168
           +  ++ EE EA A+ L +    TS K  FN+  LF  +A 
Sbjct: 121 QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  135 bits (342), Expect = 3e-40
 Identities = 68/202 (33%), Positives = 113/202 (55%), Gaps = 12/202 (5%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+S++ RF  + F  +Y  TIG+DF  +T+ +    V+LQ+WDTAGQE
Sbjct: 7   FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVII-VLVGNKTDLVD 128
           RFR++  +Y R +   ++VYDV + +SF+N  +W++E+  E+  D +  VLVGNK D  +
Sbjct: 67  RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEI--EQNCDDVCKVLVGNKNDDPE 124

Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA--ALPGMETLSSTKQEDLVD 186
           ++ V  E+    A ++ +   ETSAK   N++ +F  I         + L+  +Q+   D
Sbjct: 125 RKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLAKQQQQQQND 184

Query: 187 VNLKSSNTNTSQSQPQSGGCAC 208
           V     N+       +     C
Sbjct: 185 VVKLPKNS-------KRKKRCC 199

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  134 bits (340), Expect = 4e-40
 Identities = 63/162 (38%), Positives = 95/162 (58%), Gaps = 11/162 (6%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT----------VRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +    +           V L
Sbjct: 6   KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHL 65

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVL 119
           QLWDTAGQERFRSL  ++ RD+   ++++D+ S QSFLN   W+ +++     +   IVL
Sbjct: 66  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIVL 125

Query: 120 VGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKA 161
           +GNK DL D+R+VS  +    A +  + + ETSA  G N++ 
Sbjct: 126 IGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEK 167

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  134 bits (340), Expect = 6e-40
 Identities = 66/201 (32%), Positives = 100/201 (49%), Gaps = 15/201 (7%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           K+V LG +SVGKTS++ R+++ +F    YQ TIG  F++K M + +R V L +WDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV-- 127
           R+ ++   Y R +  A++ YD+    SF     WV+E++        I L G K+DL+  
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQ 120

Query: 128 --DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLV 185
               RQV   + +  A E+     ETS+K G N+  LF+K+A         +    E  V
Sbjct: 121 DRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSR-ANNQMNTEKGV 179

Query: 186 DVNLKSSNTNTSQSQPQSGGC 206
           D+  K               C
Sbjct: 180 DLGQK--------KNSYFYSC 192

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  133 bits (336), Expect = 1e-39
 Identities = 62/166 (37%), Positives = 98/166 (59%), Gaps = 5/166 (3%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT +  RF   +F    +ATIG+DF  +T+ ++   +++QLWDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 70  RFR-SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLV 127
           RFR S++  Y R+    V VYDV +  SF +   W+EE       ++V  +LVGNK DL 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122

Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGF---NIKALFRKIAAAL 170
           ++ QV  +  +  A   ++   ETSAK      +++A+F  +A  L
Sbjct: 123 EQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  129 bits (326), Expect = 1e-37
 Identities = 70/199 (35%), Positives = 109/199 (54%), Gaps = 8/199 (4%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQ 68
            K+V LGD + GKTS+I RF  + F  +Y+ TIG+DF S+ + L     V LQ+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKW---VEEVRTERGSDVIIVLVGNKTD 125
           +    ++  YI  +    +VYD+ + QSF N   W   V++V  E  +   +VLVGNKTD
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQE-DL 184
           L   RQV+ E+    A+E ++  I  SAK G  +   F++IAA L G++    ++ E + 
Sbjct: 121 LEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLGVKL---SQAELEQ 177

Query: 185 VDVNLKSSNTNTSQSQPQS 203
               +K+  +  S+   + 
Sbjct: 178 SQRVVKADVSRYSERTLRE 196

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  126 bits (318), Expect = 7e-37
 Identities = 59/167 (35%), Positives = 90/167 (53%), Gaps = 17/167 (10%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD +VGKT ++  +  +KF   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 71  FRSLIP-SYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           +  L P SY   + V ++ + V S  SF N  TKW  E++     +V I+LVG K DL D
Sbjct: 61  YDRLRPLSY-PQTDVFLLCFSVDSPSSFENVKTKWYPEIK-HYCPNVPIILVGTKIDLRD 118

Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
                      ++ ++ EEGE  A+E+  V ++E SA     +K +F
Sbjct: 119 DGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  123 bits (310), Expect = 6e-36
 Identities = 62/158 (39%), Positives = 99/158 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           ++L+ +GD  VGKT ++ RF  ++F +++ +TIG+DF  KT+ ++   VR+Q+WDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R++++   Y R +    +VYD++S +S+ +  KWV +V       V  +L+GNK D   K
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           RQV  E+G   A+E  + F ETSA    NIK  F ++ 
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLT 158

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  123 bits (309), Expect = 3e-35
 Identities = 73/199 (36%), Positives = 112/199 (56%), Gaps = 6/199 (3%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD  VGK+S++  F+    ++    TIG+DF  K + +  + ++L +WDTAGQE
Sbjct: 15  FKILLIGDSGVGKSSLLVSFISSSVEDL-APTIGVDFKIKQLTVGGKRLKLTIWDTAGQE 73

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTK-WVEEVRT-ERGSDVIIVLVGNKTDLV 127
           RFR+L  SY R++   ++VYDV  R++F N +  W +EV       D + +LVGNK D  
Sbjct: 74  RFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE 133

Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVDV 187
            +R VS EEG A A+E   +F+E SAK   N++  F ++  AL  ME + S  +E    V
Sbjct: 134 SERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEEL--ALKIME-VPSLLEEGSTAV 190

Query: 188 NLKSSNTNTSQSQPQSGGC 206
                        P +GGC
Sbjct: 191 KRNILKQKPEHQPPPNGGC 209

Length = 211

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  121 bits (305), Expect = 5e-35
 Identities = 63/158 (39%), Positives = 93/158 (58%), Gaps = 6/158 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGK+S++ R++ +KFD     TIG++FL+K + ++   V LQ+WDTAGQER
Sbjct: 7   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER 66

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEE----VRTERGSDVIIVLVGNKTDL 126
           FRSL   + R S   ++ + V   QSF N + W +E       +       V++GNK D 
Sbjct: 67  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID- 125

Query: 127 VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
           + +RQVS EE +A  R+     + ETSAK   N+ A F
Sbjct: 126 IPERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 163

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  121 bits (304), Expect = 1e-34
 Identities = 64/163 (39%), Positives = 94/163 (57%), Gaps = 4/163 (2%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV LGD  VGKT++  +   + F  TY  TI  D   K + ++ +   L++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIE-DSYRKQVVVDGQPCMLEVLDTAGQEE 59

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEE---VRTERGSDVIIVLVGNKTDLV 127
           + +L   +IR+    ++VY + SR +F    ++ E+   V+ E  +DV I++VGNK D V
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
            +R+VS EEG A AR L   FIE SAK   N++  F  +  AL
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  118 bits (297), Expect = 1e-33
 Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 5/158 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +G+  VGK+ II R+   +F + Y  TIGID+  K + + ++ VR+  +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS-----DVIIVLVGNKTD 125
           +  +   + +D+   ++VYDV  RQSF     W++E++ E G      ++++V+  NK D
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121

Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R VS +EG   A      + ETSA  G  +  +F
Sbjct: 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  118 bits (298), Expect = 1e-33
 Identities = 59/157 (37%), Positives = 100/157 (63%), Gaps = 1/157 (0%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G + VGKTS++ RF  D F    ++T+G+DF  KT+ L  + +RLQ+WDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
           F S+  +Y R +   ++VYD+  +++F +  KW++ +      D  ++LVGNK D    R
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121

Query: 131 QVSIEEGEAKARELNVM-FIETSAKAGFNIKALFRKI 166
           +++ ++GE  A+++  M F E SAK  FN+  +F K+
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 158

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  117 bits (295), Expect = 1e-33
 Identities = 63/161 (39%), Positives = 94/161 (58%), Gaps = 3/161 (1%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD SVGKT +I RF  D FD  Y+ATIG+DF  +   +      LQLWDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDK 129
           F+ +  +Y R +   +IV+D+    S  +T +W+E+   E   S V++ LVG K DL   
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121

Query: 130 RQVSIEEGEA--KARELNVMFIETSAKAGFNIKALFRKIAA 168
            Q ++ E +A   ARE+   +   SA  G N++  F ++A+
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVAS 162

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  115 bits (291), Expect = 7e-33
 Identities = 62/175 (35%), Positives = 93/175 (53%), Gaps = 19/175 (10%)

Query: 12  LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71
           LV +GD +VGKT ++  +  + F   Y  T+  +  S  + ++ + V L LWDTAGQE +
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDY 59

Query: 72  RSLIP-SYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDL--- 126
             L P SY  D+ V +I + V S  SF N   KW  EV+     +V I+LVG K DL   
Sbjct: 60  DRLRPLSY-PDTDVFLICFSVDSPASFENVKEKWYPEVK-HFCPNVPIILVGTKLDLRND 117

Query: 127 -------VDKRQ--VSIEEGEAKARELN-VMFIETSAKAGFNIKALFRK-IAAAL 170
                    K+Q  V+ E+G+A A+ +  V ++E SA     ++ +F + I AAL
Sbjct: 118 KSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIRAAL 172

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score =  115 bits (290), Expect = 8e-33
 Identities = 60/164 (36%), Positives = 91/164 (55%), Gaps = 5/164 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYLED--RTVRLQLWDTA 66
           +   +GD +VGK++++  F  D   F   Y  T G D + KT+ + D   +V L ++D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKTD 125
           GQE F  ++ +     +V  +VYDV +  SF N ++W+  VRT   G     VLVGNK D
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCD 121

Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA 169
           L D+R+V   + +A A+   + F ETSAK G   +A F  +A A
Sbjct: 122 LTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLARA 165

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  116 bits (291), Expect = 1e-32
 Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K + +GD  VGK  I+        ++ Y   +GID+ + T+ L+ R V+LQLWDT+GQ R
Sbjct: 8   KFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGR 67

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
           F ++  SY R +   ++VYD+ +R SF    +W++E+  E    V  +LVGN+  L  KR
Sbjct: 68  FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEI-DEHAPGVPKILVGNRLHLAFKR 126

Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           QV+ E+ +A A    + F E S    FNI   F ++A
Sbjct: 127 QVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELA 163

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  112 bits (281), Expect = 2e-31
 Identities = 58/160 (36%), Positives = 89/160 (55%), Gaps = 2/160 (1%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
             YKLV +G   VGK+++  +F+   F   Y  TI  D  +K   ++ +  RL + DTAG
Sbjct: 1   PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWARLDILDTAG 59

Query: 68  QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTDL 126
           QE F ++   Y+R     ++V+ V  R SF    K+  ++ R +   +  ++LVGNK DL
Sbjct: 60  QEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADL 119

Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
             +RQVS EEG+  AR+L + +IETSAK   N+   F  +
Sbjct: 120 EHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDL 159

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  110 bits (276), Expect = 2e-30
 Identities = 61/181 (33%), Positives = 94/181 (51%), Gaps = 18/181 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG +SVGK+S+  +F+   F  +Y  TI   F SK +  + +   L++ DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 71  FRSLIP-SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTER-------GSDVI-IVLVG 121
           + S++P  Y       ++VY V SR+SF       E V+          G + + IVLVG
Sbjct: 62  Y-SILPQKYSIGIHGYILVYSVTSRKSF-------EVVKVIYDKILDMLGKESVPIVLVG 113

Query: 122 NKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQ 181
           NK+DL  +RQVS EEG+  A      F+E+SAK   N++  F  +   +  +E      Q
Sbjct: 114 NKSDLHMERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEIEKVENPLPPGQ 173

Query: 182 E 182
           +
Sbjct: 174 K 174

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  108 bits (271), Expect = 4e-30
 Identities = 55/155 (35%), Positives = 92/155 (59%), Gaps = 2/155 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V+L + DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQLNILDTAGQE 59

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTDLVD 128
            + ++  +Y R     ++V+ +   +SF    ++ E++ R +   +V ++LVGNK DL D
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED 119

Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           KRQVS+EE    A +  V ++ETSAK   N+  +F
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVF 154

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score =  106 bits (267), Expect = 2e-29
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 13/164 (7%)

Query: 13  VFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           V +G   VGK+S++   +  +     +    T   D       L+   V+L L DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDV--YVKELDKGKVKLVLVDTPGLD 58

Query: 70  RF-----RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
            F       L    +R + + ++V D   R+S  +    +  +R  R   + I+LVGNK 
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAK--LLILRRLRKEGIPIILVGNKI 116

Query: 125 DLVDKRQVS-IEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           DL+++R+V  +   E  A+ L V   E SAK G  +  LF K+ 
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLI 160

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  108 bits (271), Expect = 2e-29
 Identities = 57/183 (31%), Positives = 93/183 (50%), Gaps = 15/183 (8%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           M  +  + ++KL+ +GD  VGKT+ + R +  +F+  Y  T+G++      Y     +  
Sbjct: 1   MQQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICF 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
            +WDTAGQE+F  L   Y      A+I++DV SR ++ N   W  ++      ++ IVLV
Sbjct: 61  NVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDI-VRVCENIPIVLV 119

Query: 121 GNKTDLVDKRQVSIEEGEAKAREL------NVMFIETSAKAGFNIKALFRKIAAALPGME 174
           GNK D+ D RQV       KAR++      N+ + + SAK+ +N +  F  +A  L    
Sbjct: 120 GNKVDVKD-RQV-------KARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDP 171

Query: 175 TLS 177
            L 
Sbjct: 172 NLV 174

Length = 215

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  106 bits (265), Expect = 4e-29
 Identities = 58/159 (36%), Positives = 91/159 (57%), Gaps = 2/159 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YK+V LG   VGK+++  +F+   F   Y  TI  DF  K + ++     L++ DTAG 
Sbjct: 1   EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGT 59

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEE-VRTERGSDVIIVLVGNKTDLV 127
           E+F S+   YI++    ++VY + ++Q+F +     ++ VR +    V I+LVGNK DL 
Sbjct: 60  EQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119

Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
            +R+VS  EG A A E    F+ETSAK+   +  LF +I
Sbjct: 120 SEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI 158

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score =  104 bits (261), Expect = 6e-28
 Identities = 65/231 (28%), Positives = 103/231 (44%), Gaps = 47/231 (20%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQE 69
           K+V LGD +VGKTS++ R+M  +F +T  +T+G  F     YL+      + +WDTAG+E
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFKDT-VSTVGGAF-----YLKQWGPYNISIWDTAGRE 55

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV-- 127
           +F  L   Y R ++  ++ YDV++ QS          +      D +  +VGNK DL   
Sbjct: 56  QFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEE 115

Query: 128 -----------------DKRQVSIEEGEAKARELN--------------VMFIETSAKAG 156
                            D+RQV++E+ +A  + +N               M  ETSAK G
Sbjct: 116 GALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTG 175

Query: 157 FNIKALFRKI-AAALPGMETLSSTKQEDLVDVNLKSSNTNTSQSQPQSGGC 206
           +N+  LF  +    LP +    +        VNL +        + +S  C
Sbjct: 176 YNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPNPK------RSKSKCC 220

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score =  103 bits (258), Expect = 6e-28
 Identities = 48/161 (29%), Positives = 88/161 (54%), Gaps = 6/161 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG   VGK+++  RF+  +F   Y+  +     S+ + ++   V L++ DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLE-SLYSRQVTIDGEQVSLEIQDTPGQQQ 59

Query: 71  F--RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVR--TERGSDVIIVLVGNKTDL 126
                 +   +R +   V+VY +  R SF   ++ ++ +R   +R  ++ ++LVGNK DL
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADL 119

Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFN-IKALFRKI 166
           +  RQVS EEG+  A EL  +F E SA   +  ++ +F ++
Sbjct: 120 LHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHEL 160

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  102 bits (256), Expect = 1e-27
 Identities = 59/159 (37%), Positives = 94/159 (59%), Gaps = 3/159 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YKLV LG   VGK+++  +F+   F + Y  TI  D   K + ++ +   L++ DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTDLVD 128
           +F ++   YI++     +VY + ++QSF +     E++ R +   DV ++LVGNK DL D
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 129 KRQVSIEEGEAKAREL-NVMFIETSAKAGFNIKALFRKI 166
           +R VS EEG+  AR+  N  F+ETSAK+  N+  +F  +
Sbjct: 121 ERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDL 159

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  102 bits (256), Expect = 2e-27
 Identities = 59/174 (33%), Positives = 81/174 (46%), Gaps = 23/174 (13%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED---RTVRLQLWDT 65
           K K+V +GD   GKT ++  +    F   Y  T+   F +    L+    + + L LWDT
Sbjct: 3   KVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV---FENYVTTLQVPNGKIIELALWDT 59

Query: 66  AGQERFRSLIP-SYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNK 123
           AGQE +  L P SY  D  V +I Y V +  S  N   KW  EV         IVLVG K
Sbjct: 60  AGQEDYDRLRPLSY-PDVDVILICYSVDNPTSLDNVEDKWYPEV-NHFCPGTPIVLVGLK 117

Query: 124 TDLVDKRQ------------VSIEEGEAKARELN-VMFIETSAKAGFNIKALFR 164
           TDL   +             V+ E+GE+ A+ +  V +IE SAK   N+  +F 
Sbjct: 118 TDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFD 171

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 99.9 bits (249), Expect = 1e-26
 Identities = 55/156 (35%), Positives = 91/156 (58%), Gaps = 2/156 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTAG 
Sbjct: 1   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGT 59

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTDLV 127
           E+F ++   Y+++    V+VY + ++ +F +     E++ R +   DV ++LVGNK DL 
Sbjct: 60  EQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119

Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           D+R V  E+G+  AR+    F+ETSAKA  N+  +F
Sbjct: 120 DERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIF 155

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 99.2 bits (247), Expect = 2e-26
 Identities = 48/154 (31%), Positives = 84/154 (54%), Gaps = 4/154 (2%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD +VGK+ ++ RF+ D ++    +T  +         E +T+ +  WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
           F+++  SY   +   ++V+DV  + ++ N +KW EE+R  R  ++  ++V NK DL D  
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDL-DPS 119

Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFR 164
               ++    A + N+     SA  G N+  LF+
Sbjct: 120 VT--QKKFNFAEKHNLPLYYVSAADGTNVVKLFQ 151

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score =  100 bits (251), Expect = 2e-26
 Identities = 56/158 (35%), Positives = 85/158 (53%), Gaps = 1/158 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++V LGD  VGK+S+   F    ++++     G D   +T+ ++     L ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS-DVIIVLVGNKTDLVD 128
               L  S ++     VIVY V  R SF   ++   ++R  R + D+ I+LVGNK+DLV 
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDLVR 120

Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
            R+VS++EG A A   +  FIETSA    N+  LF  I
Sbjct: 121 SREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGI 158

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 98.8 bits (246), Expect = 4e-26
 Identities = 57/159 (35%), Positives = 82/159 (51%), Gaps = 2/159 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK+V LG   VGK+++  +F+   F + +  TI  D       +++    L + DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIE-DAYKTQARIDNEPALLDILDTAGQA 61

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTDLVD 128
            F ++   Y+R     +I Y V  R SF   +++ E + R     D+ +VLVGNK DL  
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKVDLEQ 121

Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           +RQV+ EEG   ARE N  F ETSA   F I   F  + 
Sbjct: 122 QRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLV 160

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 98.4 bits (245), Expect = 7e-26
 Identities = 57/159 (35%), Positives = 88/159 (55%), Gaps = 2/159 (1%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  +YKLV +G   VGK+++  +F+ + F + Y  TI  D   K   +++ T  L + DT
Sbjct: 2   ASTEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIE-DSYRKQCVIDEETCLLDILDT 60

Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++   Y+R     + VY + SR SF     + E++ R +    V ++LVGNK 
Sbjct: 61  AGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKC 120

Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           DL  +RQVS  EG+  A+   + F+ETSAK   N+   F
Sbjct: 121 DLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAF 159

Length = 189

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 97.1 bits (242), Expect = 1e-25
 Identities = 53/156 (33%), Positives = 87/156 (55%), Gaps = 3/156 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTAGQ
Sbjct: 1   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQ 59

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTDLV 127
           E + ++   Y+R     + V+ + SR+SF +   + E++ R +   DV +VLVGNK DL 
Sbjct: 60  EEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDL- 118

Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
             R VS  +G+  A+   + +IETSAK    ++  F
Sbjct: 119 AARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAF 154

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 97.0 bits (242), Expect = 1e-25
 Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 11/172 (6%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     +R  +WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +F  L   Y      A+I++DV SR ++ N   W  ++      ++ IVL GNK D+ D+
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 119

Query: 130 RQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETLS 177
           +       + K     R+ N+ + E SAK+ +N +  F  +A  L G   L 
Sbjct: 120 KV------KPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGNPNLE 165

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 96.3 bits (240), Expect = 2e-25
 Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 4/160 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
            K+V +GD +VGK++++ R + +K   T Y+     ++++  +  + +T +  L DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQ-SFLNT-TKWVEEVRTERGSDVIIVLVGNKTDL 126
           E + ++   Y R    ++ V+D+            K  +E+     S V I+LVGNK DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
            D  ++        A+      I  SA+ G NI + F+ +
Sbjct: 122 RD-AKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 160

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 96.4 bits (240), Expect = 9e-25
 Identities = 58/173 (33%), Positives = 90/173 (52%), Gaps = 13/173 (7%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y+ TIG++      +     +R   WDTAGQE
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVD 128
           +F  L   Y      A+I++DV +R ++ N   W  ++   R  + I IVL GNK D+ +
Sbjct: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC--RVCENIPIVLCGNKVDVKN 131

Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETLS 177
            RQV     +AK     R+ N+ + E SAK+ +N +  F  +A  L G   L 
Sbjct: 132 -RQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLH 178

Length = 219

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 94.5 bits (235), Expect = 1e-24
 Identities = 57/156 (36%), Positives = 89/156 (57%), Gaps = 3/156 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK+V LG   VGK+++  +F+ + F  +Y  TI  D   K + ++ R   L++ DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIE-DSYRKQVEIDGRQCDLEILDTAGTE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTDLVD 128
           +F ++   YI+     ++VY V S  S     +  E+V R +   +V +VLVGNK DL D
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120

Query: 129 KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
            RQVS E+G + +++   V F ETSA+   N+  +F
Sbjct: 121 DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVF 156

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 93.6 bits (233), Expect = 4e-24
 Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKTS+I  +  + +   Y  T   D  S  + ++ + VRLQL DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT-AFDNFSVVVLVDGKPVRLQLCDTAGQDE 60

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           F  L P    D+ V ++ + V +  SF N + KW+ E+R        I+LVG + DL   
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRK-HNPKAPIILVGTQADLRTD 119

Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
                      ++ VS    +A A ++    +IE SA    N+K +F
Sbjct: 120 VNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 91.4 bits (227), Expect = 2e-23
 Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 4/160 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++V  G   VGK+S++ RF+   F  +Y  TI  D   + +        LQ+ DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCSKSICTLQITDTTGSH 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD---VIIVLVGNKTDL 126
           +F ++    I      ++VY + S+QS        E +   +G++   + I+LVGNK D 
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDE 120

Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
              R+VS  EG A AR  N  F+ETSAK   N++ LF+++
Sbjct: 121 SPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQEL 160

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 89.8 bits (223), Expect = 1e-22
 Identities = 39/165 (23%), Positives = 85/165 (51%), Gaps = 6/165 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LGD  +GKTS++ +++  +FD  Y  T+G++F+ KT+ +    +   +WD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL---- 126
           F +++P   +D+   + ++D+  + +  +  +W  + R    +  I +LVG K DL    
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKT-AIPILVGTKYDLFADL 120

Query: 127 -VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
             ++++   ++    A+ +    I  S     N++ +F+ + A +
Sbjct: 121 PPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKFVLAKV 165

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 89.5 bits (222), Expect = 2e-22
 Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 5/166 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +LVF+G   VGKT++I RF+YD F+  ++ T+  +  SK   +    V + + DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTDLVDK 129
           F ++    I++     +VY V   +SF    +  EE+   +    V IV+VGNK D + +
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 130 RQVSIEEGEAKAR-ELNVMFIETSAKAGFNIKALFRKI--AAALPG 172
           RQV   +  +    + N  F+E SAK   N+  +F+++   A LP 
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQANLPS 165

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 89.7 bits (222), Expect = 2e-22
 Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 11/166 (6%)

Query: 15  LGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74
           +GD   GKT+ + R +  +F+  Y AT+G++      +     +R  +WDTAGQE+F  L
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 75  IPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSI 134
              Y      A+I++DV +R ++ N   W  ++      ++ IVL GNK D+ D R+V  
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKD-RKV-- 116

Query: 135 EEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
              +AK+    R+ N+ + + SAK+ +N +  F  +A  L G   L
Sbjct: 117 ---KAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 159

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 88.8 bits (220), Expect = 3e-22
 Identities = 59/171 (34%), Positives = 88/171 (51%), Gaps = 18/171 (10%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V LGD + GKTS++  F    F   Y+ T+  +++   ++++   V L LWDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYI-HDIFVDGLAVELSLWDTAGQEE 60

Query: 71  F---RSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDL 126
           F   RSL  SY  D+ V ++ + V +  S  N  +KW+ E+R      V +VLV  K DL
Sbjct: 61  FDRLRSL--SY-ADTHVIMLCFSVDNPDSLENVESKWLAEIR-HHCPGVKLVLVALKCDL 116

Query: 127 VDKRQV--------SIEEGEAKARELN-VMFIETSAKAGFNIKALFRKIAA 168
            + R          S EEG A A+ +N   ++E SAK    +   F + A 
Sbjct: 117 REPRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAAR 167

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 87.4 bits (217), Expect = 5e-22
 Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 6/160 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQE 69
           KL+ +G   VGKTS+  + + +KFD    +T GI+     +   +R  +RL +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTK--WVEEVRTERGSDVIIVLVGNKTDLV 127
            + +    ++   S+ ++V+D   R     +    W+ +++   G    ++LVG   D  
Sbjct: 63  IYHATHQFFLTSRSLYLLVFD--LRTGDEVSRVPYWLRQIKA-FGGVSPVILVGTHIDES 119

Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
               +  +    K   +       S K G  I  L + IA
Sbjct: 120 CDEDILKKALNKKFPAIINDIHFVSCKNGKGIAELKKAIA 159

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 87.5 bits (217), Expect = 8e-22
 Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 16/167 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV +GD + GKT ++  F  D+F   Y  T+  +++   + ++ + V L LWDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 61

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK DL   
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 120

Query: 127 ---------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
                    + +  V  EEG A A ++    ++E SAK    ++ +F
Sbjct: 121 EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVF 167

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 87.6 bits (217), Expect = 9e-22
 Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 14/167 (8%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKTS++  F   +F   Y  T+  ++++    ++ + V+L LWDTAGQ
Sbjct: 1   RRKLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTD-CRVDGKPVQLALWDTAGQ 59

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLV 127
           E +  L P     + V +I + + +  S  N  TKW+EEVR     +V ++LVG K DL 
Sbjct: 60  EEYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLR 118

Query: 128 DK----------RQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
            +            V I++ +  AR +    ++E SA  G  +  +F
Sbjct: 119 QEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF 165

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 84.5 bits (209), Expect = 1e-20
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 61

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + S  SF N   KW  EVR     +  I+LVG K DL D 
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 120

Query: 130 RQ------------VSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +             ++  +G A A+E+  V ++E SA     +K +F
Sbjct: 121 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 81.4 bits (201), Expect = 1e-19
 Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 14/165 (8%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++  TV L LWDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGNTVNLGLWDTAGQED 61

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P   R + V ++ + + S+ S+ N   KW+ E+R      V IVLVG K DL D 
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELR-HYAPGVPIVLVGTKLDLRDD 120

Query: 130 RQ----------VSIEEGEAKARELNV-MFIETSAKAGFNIKALF 163
           +Q          ++  +GE   +++    +IE S+K   N+KA+F
Sbjct: 121 KQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 165

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 82.9 bits (205), Expect = 2e-19
 Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 13/174 (7%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++V LG   VGKT+I++RF+  +F+  Y  TI  DF  K   +     +L + DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSF---------LNTTKWVEEVRTERGSDVIIVLV 120
            F ++    I    V ++V+ + +R+SF         +  TK   + +T+    + +V+ 
Sbjct: 60  PFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVIC 119

Query: 121 GNKTDLVDKRQVSIEEGEA-KARELNVMFIETSAKAGFNIKALFRKIA--AALP 171
           GNK D    R+V  +E E     + N  + E SAK   N+  +FR +   A LP
Sbjct: 120 GNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAKLP 173

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 79.4 bits (196), Expect = 2e-19
 Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 4/117 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD+  GK+S++++ +  +F        G      T+ ++  T  L +WD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSF---LNTTKWVEEVRTERGSDVIIVLVGNKT 124
            +     +++ +   ++VYD+  R+S         W+  +R + G  + ++LVGNK 
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLR-KLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 75.8 bits (186), Expect = 3e-17
 Identities = 58/177 (32%), Positives = 91/177 (51%), Gaps = 22/177 (12%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE- 69
           K V +GD +VGKT ++  +  + F   Y  T+  D  S    ++ RTV L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQTAVDGRTVSLNLWDTAGQEE 63

Query: 70  --RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDL 126
             R R+L  SY + ++V +I + +AS  S+ N   KW  EV      +V I+LVG K DL
Sbjct: 64  YDRLRTL--SYPQ-TNVFIICFSIASPSSYENVRHKWHPEV-CHHCPNVPILLVGTKKDL 119

Query: 127 VDKRQV------------SIEEGEAKARELN-VMFIETSAKAGFNIKALFRKIAAAL 170
            +                + ++G A A++++ V ++E SA     +K +F +   A+
Sbjct: 120 RNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAV 176

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 75.5 bits (186), Expect = 3e-17
 Identities = 48/169 (28%), Positives = 87/169 (51%), Gaps = 17/169 (10%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD   GKT+++  F  D F   Y  T+  +  + +  ++ + + L LWDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTD---- 125
           + ++ P    DS   +I +D++  ++  +   KW  EVR E   +  ++LVG K+D    
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVR-EFCPNTPVLLVGCKSDLRTD 120

Query: 126 ------LVDKRQ--VSIEEGEAKARELN-VMFIETSAKAG-FNIKALFR 164
                 L +KRQ  VS E+G   A+++    ++E SAK    +++ +F 
Sbjct: 121 LSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFE 169

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 73.4 bits (180), Expect = 2e-16
 Identities = 57/175 (32%), Positives = 87/175 (49%), Gaps = 17/175 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 61

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V S  SF N   KWV E+ T        +LVG + DL D 
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 120

Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALFRK-IAAAL 170
                      ++ ++ E GE  AR+L  V ++E SA     +K +F + I AAL
Sbjct: 121 PSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 175

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 66.6 bits (162), Expect = 7e-14
 Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 16/167 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  D F   Y  T+  D  + ++ +  +   L L+DTAGQE 
Sbjct: 2   KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQED 60

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           +  L P     + V +I + V +  SF N   +WV E++ E   +V  +L+G + DL D 
Sbjct: 61  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPNVPYLLIGTQIDLRDD 119

Query: 129 -----------KRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
                      ++ +++E+G+  A+E+    ++E SA     +K +F
Sbjct: 120 PKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVF 166

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 65.7 bits (161), Expect = 9e-14
 Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 23/167 (13%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG    GKT+I+ +    +   T   TIG  F  +T  +E + V+  +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTT-IPTIG--FNVET--VEYKNVKFTVWDVGGQDK 55

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE--------RGSDVIIVLVGN 122
            R L   Y  ++   + V D + R+         EE + E              ++++ N
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERI-------EEAKNELHKLLNEEELKGAPLLILAN 108

Query: 123 KTDLVDKRQVS-IEE--GEAKARELNVMFIETSAKAGFNIKALFRKI 166
           K DL      S + E  G    +         SA  G  +      +
Sbjct: 109 KQDLPGALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWL 155

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 66.6 bits (162), Expect = 2e-13
 Identities = 49/183 (26%), Positives = 92/183 (50%), Gaps = 17/183 (9%)

Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
            P   + + KLV +GD   GKT+++     D +  TY  T+  ++ +  +  E++ V L 
Sbjct: 6   NPQPLVVRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 64

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLV 120
           LWDT+G   + ++ P    DS   ++ +D++  + F +   KW  E+  +      I+L+
Sbjct: 65  LWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEI-LDYCPSTRILLI 123

Query: 121 GNKTD----------LVDKRQ--VSIEEGEAKARELNV-MFIETSA-KAGFNIKALFRKI 166
           G KTD          L +++Q  +S E+G A A++L    ++E SA  +  +I ++FR  
Sbjct: 124 GCKTDLRTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTA 183

Query: 167 AAA 169
           +  
Sbjct: 184 SLL 186

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 63.9 bits (156), Expect = 5e-13
 Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 20/164 (12%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKF-DNTY----QATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++V +GD+ VGK+S+I   + ++F +N      + TI  D        E     +   DT
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTP-----ERVPTTIV--DT 56

Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
           + + + R+ + + IR ++V  +VY V    +     TKW+  +R      V I+LVGNK+
Sbjct: 57  SSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKS 115

Query: 125 DLVDKRQVSIEEGE-----AKARELNVMFIETSAKAGFNIKALF 163
           DL D    +  E E      + RE+    +E SAK   N+  +F
Sbjct: 116 DLRDGSSQAGLEEEMLPIMNEFREIET-CVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 64.5 bits (157), Expect = 6e-13
 Identities = 52/181 (28%), Positives = 78/181 (43%), Gaps = 36/181 (19%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD----- 64
            ++  LG   VGKT+I+ +F+  +F   Y  T         + L  R   L + D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 65  ----TAGQE----RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT---KWVEEVRTERGS 113
               TAGQE    RFR L     R+S   ++VYD+ S  SF       + + E R     
Sbjct: 61  RYPGTAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115

Query: 114 DVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVM--------FIETSAKAGFNIKALFRK 165
           +  IV+VGNK D    R        A    L+V+        ++E SAK  ++I  LF++
Sbjct: 116 EPPIVVVGNKRDQQRHRF-------APRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKE 168

Query: 166 I 166
           +
Sbjct: 169 L 169

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 63.4 bits (155), Expect = 8e-13
 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 20/128 (15%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG  + GKT+I+ +    +   T   TIG  F  +T  +  + V+  +WD  GQ
Sbjct: 14  EMRILILGLDNAGKTTILYKLKLGEIVTT-IPTIG--FNVET--VTYKNVKFTVWDVGGQ 68

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE--------RGSDVIIVLV 120
           E  R L  +Y  ++   + V D A R          EE + E          +D  ++++
Sbjct: 69  ESLRPLWRNYFPNTDAVIFVVDSADRDRI-------EEAKEELHALLNEEELADAPLLIL 121

Query: 121 GNKTDLVD 128
            NK DL  
Sbjct: 122 ANKQDLPG 129

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 60.5 bits (146), Expect = 1e-11
 Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 16/164 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 5   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 63

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTD-- 125
             + ++ P    DS   +I +D++  ++  +   KW  E++ E   +  ++LVG K+D  
Sbjct: 64  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSDLR 122

Query: 126 --------LVDKRQ--VSIEEGEAKARELNVM-FIETSAKAGFN 158
                   L + RQ  VS ++G   A+++    +IE SA    N
Sbjct: 123 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 59.3 bits (143), Expect = 7e-11
 Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 18/163 (11%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD   GKT+++  F  D +  +Y  T+  ++ + +  ++   + L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENY-TASFEIDKHRIELNMWDTSGSSY 61

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLN--TTKWVEEVRTERGSDVIIVLVGNK----T 124
           + ++ P    DS   +I +D+ SR   L+    KW  E + E   +  +VLVG K    T
Sbjct: 62  YDNVRPLAYPDSDAVLICFDI-SRPETLDSVLKKWQGETQ-EFCPNAKLVLVGCKLDMRT 119

Query: 125 DLVDKRQ--------VSIEEGEAKARELN-VMFIETSAKAGFN 158
           DL   R+        V+ E+G   AR+L  V ++E S++   N
Sbjct: 120 DLSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSEN 162

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 56.9 bits (137), Expect = 3e-10
 Identities = 56/193 (29%), Positives = 78/193 (40%), Gaps = 46/193 (23%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI-------GID-FLSKTMYLE------- 54
            K V +GD +VGKT +I     +K    YQ           ID +      LE       
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62

Query: 55  DRTVRLQLWDTAG----QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRT 109
             +V L+LWDT G      RF     +Y R S V ++ + +AS  S  N  T W  E+R 
Sbjct: 63  GVSVSLRLWDTFGDHDKDRRF-----AYGR-SDVVLLCFSIASPNSLRNVKTMWYPEIR- 115

Query: 110 ERGSDVIIVLVGNKTDL-------------------VDKRQVSIEEGEAKARELNVMFIE 150
                V ++LVG K DL                    +   +  E G A A+EL + + E
Sbjct: 116 HFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYE 175

Query: 151 TSAKAGFNIKALF 163
           TS    F +K +F
Sbjct: 176 TSVVTQFGVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 52.9 bits (127), Expect = 7e-09
 Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 21/126 (16%)

Query: 12  LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQ 68
           +V LG  S GKT+++ R  +++F NT   T G  F ++ + +     + V    WD  GQ
Sbjct: 6   IVMLGLDSAGKTTVLYRLKFNEFVNTV-PTKG--FNTEKIKVSLGNAKGVTFHFWDVGGQ 62

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-----RGSD---VIIVLV 120
           E+ R L  SY R +   V V D           + +EE +TE     + S+   V ++++
Sbjct: 63  EKLRPLWKSYTRCTDGIVFVVDSVD-------VERMEEAKTELHKITKFSENQGVPVLVL 115

Query: 121 GNKTDL 126
            NK DL
Sbjct: 116 ANKQDL 121

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 12/153 (7%)

Query: 15  LGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74
           +G Q+ GKT+++      +F      T+G +    T       V +++WD  GQ RFRS+
Sbjct: 5   VGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTK----GNVTIKVWDLGGQPRFRSM 60

Query: 75  IPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV-GNKTDLVDKRQVS 133
              Y R  +  V V D A R+        + ++  +   + I +LV GNK DL     V 
Sbjct: 61  WERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVD 120

Query: 134 --IEE---GEAKARELNVMFIETSAKAGFNIKA 161
             IE+        RE  V     SAK   NI  
Sbjct: 121 ELIEQMNLKSITDRE--VSCYSISAKEKTNIDI 151

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 49.3 bits (118), Expect = 8e-08
 Identities = 31/117 (26%), Positives = 61/117 (52%), Gaps = 5/117 (4%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  S GK++++ +  + +   T   T+G  F  + + LE + + L +WD  GQE+
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVTTI-PTVG--FNVEMLQLE-KHLSLTVWDVGGQEK 56

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTDL 126
            R++   Y+ ++   V V D +       + K ++ + + E    V +VL+ NK DL
Sbjct: 57  MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDL 113

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 12/125 (9%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
            +YK++ +G  + GKT+I+ +F+  +  +T   TIG    S    +  + +R  +WD  G
Sbjct: 14  KEYKVIIVGLDNAGKTTILYQFLLGEVVHT-SPTIG----SNVEEIVYKNIRFLMWDIGG 68

Query: 68  QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEE----VRTERGSDVIIVLVGNK 123
           QE  RS   +Y  ++   ++V D   R   L  TK  EE    +  E     +++++ NK
Sbjct: 69  QESLRSSWNTYYTNTDAVILVIDSTDR-ERLPLTK--EELYKMLAHEDLRKAVLLVLANK 125

Query: 124 TDLVD 128
            DL  
Sbjct: 126 QDLKG 130

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 47.3 bits (112), Expect = 5e-07
 Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 8/127 (6%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           ++V LG    GKT+I+ +   D+F    Q    I F  +T  +E + ++  +WD  G+ +
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEF---MQPIPTIGFNVET--VEYKNLKFTIWDVGGKHK 55

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDK 129
            R L   Y  ++   V V D + R         + ++ TE+   D ++++  NK D+   
Sbjct: 56  LRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA 115

Query: 130 RQVSIEE 136
             +S+EE
Sbjct: 116 --LSVEE 120

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 8/127 (6%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+VFLG  + GKT+++     D+    +  T+       +  L    V+   +D  G E+
Sbjct: 21  KIVFLGLDNAGKTTLLHMLKDDRLA-QHVPTLH----PTSEELTIGNVKFTTFDLGGHEQ 75

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTDLVDK 129
            R +   Y  +    V + D A  + F  + + ++ +   E  ++V I+++GNK D    
Sbjct: 76  ARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILILGNKIDK--P 133

Query: 130 RQVSIEE 136
             VS EE
Sbjct: 134 GAVSEEE 140

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 44.9 bits (107), Expect = 4e-06
 Identities = 39/170 (22%), Positives = 57/170 (33%), Gaps = 21/170 (12%)

Query: 13  VFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAG- 67
              G  +VGK+S++   +             T       K   L     V L   DT G 
Sbjct: 1   AIFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPV--RKEWELLPLGPVVLI--DTPGL 56

Query: 68  -----QERFRS-LIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVG 121
                  R R          + + ++V D       L   +   ++   R     ++LV 
Sbjct: 57  DEEGGLGRERVEEARQVADRADLVLLVVDSD-----LTPVEEEAKLGLLRERGKPVLLVL 111

Query: 122 NKTDLVDKRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALFRKIAAAL 170
           NK DLV + +      E K   L  +  I  SA  G  I  L +KIA  L
Sbjct: 112 NKIDLVPESEEEELLRERKLELLPDLPVIAVSALPGEGIDELRKKIAELL 161

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 42/185 (22%), Positives = 72/185 (38%), Gaps = 41/185 (22%)

Query: 11  KLVFLGDQSVGKTSIITRFM-------YDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
           K+  +G  +VGK+S+I   +        D       A    D +      + R   L   
Sbjct: 180 KIAIIGRPNVGKSSLINAILGEERVIVSD------IAGTTRDSIDIEFERDGRKYVL--I 231

Query: 64  DTAG----------QERFRSL--IPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTER 111
           DTAG           E++     + + I  + V ++V D    +        +  +  E 
Sbjct: 232 DTAGIRRKGKITESVEKYSVARTLKA-IERADVVLLVIDA--TEGISEQDLRIAGLIEEA 288

Query: 112 GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL-------NVMFIETSAKAGFNIKALFR 164
           G  ++IV+  NK DLV++ + ++EE + K R          ++FI  SA  G  +  LF 
Sbjct: 289 GRGIVIVV--NKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI--SALTGQGLDKLFE 344

Query: 165 KIAAA 169
            I   
Sbjct: 345 AIKEI 349

Length = 444

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 20/126 (15%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+I+ +    +   T   T+G +  + T     + V+  +WD  GQ++
Sbjct: 11  RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 65

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE--------RGSDVIIVLVGN 122
            R L   Y   +   + V D A R         ++E R E           D ++++  N
Sbjct: 66  IRPLWRHYYTGTQGLIFVVDSADRDR-------IDEARQELHRIINDREMRDALLLVFAN 118

Query: 123 KTDLVD 128
           K DL D
Sbjct: 119 KQDLPD 124

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 40/159 (25%), Positives = 61/159 (38%), Gaps = 20/159 (12%)

Query: 11  KLVFLGDQSVGKTSIITRFMY------------DKFDNTYQATIGIDFLSKTMYLEDRTV 58
           K+V +G    GKT+ +                          T+ +DF S  +   + T 
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD--EDTG 69

Query: 59  RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIV 118
            + L+ T GQERF+ +     R +  A+++ D +SR     T    E +      + I V
Sbjct: 70  -VHLFGTPGQERFKFMWEILSRGAVGAIVLVD-SSR---PITFHAEEIIDFLTSRNPIPV 124

Query: 119 LVG-NKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAG 156
           +V  NK DL D           K   L+V  IE  A  G
Sbjct: 125 VVAINKQDLFDALPPEKIREALKLELLSVPVIEIDATEG 163

Length = 187

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 12/112 (10%)

Query: 58  VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEE--VRTERGSDV 115
            RL  WD  GQE  RSL   Y  +S   + V D ++ +   N +K   E  +  E    V
Sbjct: 51  ARLMFWDLGGQEELRSLWDKYYAESHGVIYVID-STDRERFNESKSAFEKVINNEALEGV 109

Query: 116 IIVLVGNKTDLVDKRQVSIEE-------GEAKARELNVMFIETSAKAGFNIK 160
            ++++ NK DL D   +S+ E         A     + +    SA  G  ++
Sbjct: 110 PLLVLANKQDLPDA--LSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVE 159

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 6/119 (5%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G  + GKT+I+ +    +   T   TIG +  +    +  + +   +WD  GQ++
Sbjct: 15  RILMVGLDAAGKTTILYKLKLGESVTTI-PTIGFNVET----VTYKNISFTVWDVGGQDK 69

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVD 128
            R L   Y  ++   + V D   R       + +  +  E    D +I++  NK DL D
Sbjct: 70  IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD 128

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 25/150 (16%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVR------LQLWD 64
           K++ +G +  GK+S+ +      F N Y        L  T+ +E   VR      L LWD
Sbjct: 1   KVLLMGLRGSGKSSMRSII----FSN-YSPR-DTLRLGATIDVEQSHVRFLGNLTLNLWD 54

Query: 65  TAGQERFRSLIPSYIRD---SSVAVIVY--DVASRQ---SFLNTTKWVEEVRTERGSDVI 116
             GQ+ F     +  ++   S+V V++Y  DV SR+         K +E +  +   +  
Sbjct: 55  CPGQDDFMENYLTRQKEHIFSNVGVLIYVFDVESREYEEDLATLVKIIEALY-QYSPNAK 113

Query: 117 I-VLVGNKTDLV--DKRQVSIEEGEAKARE 143
           + VL+ +K DL+  D+R+   E+ + +  E
Sbjct: 114 VFVLI-HKMDLLSEDERKEIFEDRKEEIIE 142

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 110 ERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA 169
           E G  V++ L  N  D  +K+ + I+  +  +  L V  + TSA+ G  I  L   I   
Sbjct: 103 ELGIPVVVAL--NMMDEAEKKGIKIDI-KKLSELLGVPVVPTSARKGEGIDELKDAIIEV 159

Query: 170 LPG 172
             G
Sbjct: 160 AEG 162

Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 190

>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 102 KWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKA 161
           + +EE++ ER    I+V+  NK DL         E E   ++  +  I  SA  G  I  
Sbjct: 105 ELIEELK-ERKIPYIVVI--NKIDLG----EESAELEKLEKKFGLPPIFVSALTGEGIDE 157

Query: 162 LFRKIAAALP 171
           L   I   LP
Sbjct: 158 LKEAIIELLP 167

This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391

>gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA

 Score = 39.0 bits (92), Expect = 4e-04
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 13/98 (13%)

Query: 79  IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGE 138
           I  + V ++V D  + +        +  +  E G  +IIV+  NK DLV+K + +++E E
Sbjct: 82  IERADVVLLVLD--ASEGITEQDLRIAGLILEEGKALIIVV--NKWDLVEKDEKTMKEFE 137

Query: 139 AKARE----LN---VMFIETSAKAGFNIKALFRKIAAA 169
            + R     L+   ++FI  SA  G  +  LF  I   
Sbjct: 138 KELRRKLPFLDYAPIVFI--SALTGQGVDKLFDAIKEV 173

This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 174

>gnl|CDD|225171 COG2262, HflX, GTPases [General function prediction only]

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 8/105 (7%)

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLV 127
           E F+S +   ++++ + + V D +  +  L   + VE+V  E G  ++ I+LV NK DL+
Sbjct: 260 EAFKSTLEE-VKEADLLLHVVDASDPE-ILEKLEAVEDVLAEIGADEIPIILVLNKIDLL 317

Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPG 172
           +      EE  A+    +   +  SAK G  +  L  +I   L G
Sbjct: 318 ED-----EEILAELERGSPNPVFISAKTGEGLDLLRERIIELLSG 357

Length = 411

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 14/123 (11%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIG-------IDFLSKTMYLEDRTVRLQLW 63
           K++ LGD  VGK+S++     ++       T+G         +   T   E++T  ++LW
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTP--EEKTFYVELW 59

Query: 64  DTAGQ----ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVL 119
           D  G     E  +S    +    +  + V+D+ +++S  N  +W  E    R +    +L
Sbjct: 60  DVGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEA-LNRDTFPAGLL 118

Query: 120 VGN 122
           V N
Sbjct: 119 VTN 121

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family

 Score = 38.2 bits (90), Expect = 8e-04
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 110 ERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA 169
           E G  V++ L  N  D  +KR + I+  +  +  L V  + TSA+ G  I  L   IA  
Sbjct: 100 ELGLPVVVAL--NMIDEAEKRGIKIDL-DKLSELLGVPVVPTSARKGEGIDELLDAIAKL 156

Query: 170 LPG 172
              
Sbjct: 157 AES 159

Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 33/148 (22%)

Query: 11  KLVFLGDQSVGKTS----IITRFMYDKFDNTYQATIGIDFL---------SKTMYLEDRT 57
           +++ +GD  VGK+S    I+      +   T   T+G+  +         +      +R 
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 58  VRLQLWDTAGQERF---RSLIPSYIRDSSVAVI-VYDVASRQSFLNTTKWVEEVRTER-- 111
             ++LWD +G ER+   RSL  S I      VI V+D++ R++  +  KW  EV      
Sbjct: 83  FFVELWDVSGHERYKDCRSLFYSQIN----GVIFVHDLSQRRTKTSLQKWASEVAATGTF 138

Query: 112 ----------GSDVIIVLVGNKTDLVDK 129
                     G  V  +++GNK D+  K
Sbjct: 139 SAPLGSGGPGGLPVPYIVIGNKADIAPK 166

Length = 334

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 35/168 (20%), Positives = 75/168 (44%), Gaps = 25/168 (14%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQA---TIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           KL  +G+   GK++++ R++      +Y       G  F  K + ++ ++  L + D  G
Sbjct: 2   KLGIVGNLRSGKSALVHRYL----TGSYVQLESPEGGRF-KKEVLVDGQSHLLLIRDEGG 56

Query: 68  QE--RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKT 124
               +F   + + I        V+ +    SF    +   ++ + R  S++ ++LVG + 
Sbjct: 57  APDAQFAGWVDAVI-------FVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQD 109

Query: 125 DLVDKRQVSIEEGEAKAREL-----NVMFIETSAKAGFNIKALFRKIA 167
            +       I++  A+AR+L        + ET A  G N++ +F++ A
Sbjct: 110 AISASNPRVIDD--ARARQLCADMKRCSYYETCATYGLNVERVFQEAA 155

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206666 cd01878, HflX, HflX GTPase family

 Score = 37.8 bits (89), Expect = 0.001
 Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 104 VEEVRTERGSDVI-IVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL 162
           VEEV  E G+D I I+LV NK DL+D      EE E + R      +  SAK G  +  L
Sbjct: 142 VEEVLKELGADDIPIILVLNKIDLLDD-----EELEERLRAGRPDAVFISAKTGEGLDLL 196

Query: 163 FRKIAAAL 170
              I   L
Sbjct: 197 KEAIEELL 204

HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. Length = 204

>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed

 Score = 38.1 bits (90), Expect = 0.002
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 9/60 (15%)

Query: 117 IVLVGNKTDLVDKRQVSIEEGEAKARELNVMF-----IETSAKAGFNIKALFRKIAAALP 171
           ++LV NK DLV  +    EE      EL+ +      +  SA  G N+  L   IA  LP
Sbjct: 116 VILVLNKIDLVKDK----EELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLP 171

Length = 292

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 40/177 (22%), Positives = 73/177 (41%), Gaps = 19/177 (10%)

Query: 15  LGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS 73
           LG +  GK++++  F+   F  N Y  TI   +   T+ +  +   L L +    E    
Sbjct: 10  LGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVPGQEKYLILREVGEDEEAIL 69

Query: 74  LIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRT--ERGSDVIIVLVGNKTDLVDKRQ 131
           L  + +    VA +VYD +   SF     +  EV        ++  + V  K DL +++Q
Sbjct: 70  LNDAELAACDVACLVYDSSDPNSF----SYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQ 125

Query: 132 VSIEEGEAKARELNVMFIET----SAKAGFNIKALFRKI--AAALPGM---ETLSST 179
            +  + +   R+   + +      S++ G +   LF K+  AA  P +   E  S  
Sbjct: 126 RAEVQPDEFCRK---LGLPPPLHFSSRLGDSSNELFTKLATAAQYPHLSIPELESGK 179

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 29/125 (23%)

Query: 58  VRLQLWDTAG------------QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVE 105
           + ++L DTAG             ER R  I     ++ + ++V D +      +      
Sbjct: 51  IPVRLIDTAGLRETEDEIEKIGIERAREAI----EEADLVLLVVDASEGLDEED------ 100

Query: 106 EVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK 165
               E  +   +++V NK+DL+   +   E             I  SAK G  I  L   
Sbjct: 101 LEILELPAKKPVIVVLNKSDLLSDAEGISELNGKP-------IIAISAKTGEGIDELKEA 153

Query: 166 IAAAL 170
           +    
Sbjct: 154 LLELA 158

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 15/123 (12%)

Query: 13  VFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERF 71
           + LG    GKT++ T+    K  +T  +   I+    + Y    +  +L L D  G E+ 
Sbjct: 4   LLLGPSDSGKTALFTKLTTGKVRSTVTS---IEPNVASFYSNSSKGKKLTLVDVPGHEKL 60

Query: 72  RSLIPSYIRDSSVAVI-VYDVASRQ-------SFLNTTKWVEEVRTERGSDVIIVLVGNK 123
           R  +  Y++ S  A++ V D A+ Q        FL       E    +   + I++  NK
Sbjct: 61  RDKLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNK---IPILIACNK 117

Query: 124 TDL 126
            DL
Sbjct: 118 QDL 120

Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202

>gnl|CDD|206726 cd04163, Era, E

 Score = 36.7 bits (86), Expect = 0.003
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 111 RGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIET---SAKAGFNIKALFRKIA 167
           + S   ++LV NK DLV  ++  +     K +EL+  F E    SA  G N+  L   I 
Sbjct: 108 KKSKTPVILVLNKIDLVKDKED-LLPLLEKLKELHP-FAEIFPISALKGENVDELLEYIV 165

Query: 168 AAL 170
             L
Sbjct: 166 EYL 168

coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168

>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed

 Score = 37.4 bits (88), Expect = 0.003
 Identities = 34/140 (24%), Positives = 52/140 (37%), Gaps = 33/140 (23%)

Query: 58  VRLQLWDTAG------------QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVE 105
           + L+L DTAG             ER R  I     ++ + ++V D AS        + +E
Sbjct: 263 IPLRLIDTAGIRETDDEVEKIGIERSREAI----EEADLVLLVLD-ASEPLTEEDDEILE 317

Query: 106 EVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK 165
           E++     D  +++V NK DL  +  +  E G+          I  SAK G  I  L   
Sbjct: 318 ELK-----DKPVIVVLNKADLTGEIDLEEENGKP--------VIRISAKTGEGIDELREA 364

Query: 166 IAAALPGMETLSSTKQEDLV 185
           I              QE + 
Sbjct: 365 IKEL---AFGGFGGNQEGVF 381

Length = 449

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	208
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.98
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.98
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.98
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.98
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.98
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.98
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.98
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.98
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.97
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
KOG0395	196	consensus Ras-related GTPase [General function pre	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.96
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.96
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
PTZ00133	182	ADP-ribosylation factor; Provisional	99.96
PTZ00099	176	rab6; Provisional	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.95
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.95
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.94
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.94
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.93
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.93
PRK12299	335	obgE GTPase CgtA; Reviewed	99.93
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.93
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.93
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.93
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.93
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.92
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.92
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.92
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.92
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.92
PRK04213	201	GTP-binding protein; Provisional	99.91
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.91
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.91
PRK15494	339	era GTPase Era; Provisional	99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.91
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.91
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.91
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.9
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.9
PRK03003	472	GTP-binding protein Der; Reviewed	99.9
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.9
KOG1673	205	consensus Ras GTPases [General function prediction	99.9
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.89
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.89
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.89
cd00881	189	GTP_translation_factor GTP translation factor fami	99.89
PRK03003	472	GTP-binding protein Der; Reviewed	99.89
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.89
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.89
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.89
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.89
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.89
PRK12297	424	obgE GTPase CgtA; Reviewed	99.89
PRK11058	426	GTPase HflX; Provisional	99.88
PRK12296	500	obgE GTPase CgtA; Reviewed	99.88
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.88
COG1160	444	Predicted GTPases [General function prediction onl	99.88
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.88
PRK00093	435	GTP-binding protein Der; Reviewed	99.88
PRK05306	787	infB translation initiation factor IF-2; Validated	99.88
PRK12298	390	obgE GTPase CgtA; Reviewed	99.88
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.88
CHL00189	742	infB translation initiation factor 2; Provisional	99.88
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.87
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.87
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.87
PRK00089	292	era GTPase Era; Reviewed	99.87
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.87
COG1159	298	Era GTPase [General function prediction only]	99.87
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.87
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.87
PRK05433	600	GTP-binding protein LepA; Provisional	99.87
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.86
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.86
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.86
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.86
PRK12317	425	elongation factor 1-alpha; Reviewed	99.85
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.85
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.84
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.84
PRK00093	435	GTP-binding protein Der; Reviewed	99.84
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.84
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.84
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.83
COG2229	187	Predicted GTPase [General function prediction only	99.83
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.83
COG0486	454	ThdF Predicted GTPase [General function prediction	99.83
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.83
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.83
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.82
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.82
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.82
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.82
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.82
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.81
COG1160	444	Predicted GTPases [General function prediction onl	99.81
PRK04004	586	translation initiation factor IF-2; Validated	99.81
PRK10218	607	GTP-binding protein; Provisional	99.81
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.81
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.81
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.8
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.8
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.8
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.78
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.78
PRK12736	394	elongation factor Tu; Reviewed	99.78
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.78
COG0218	200	Predicted GTPase [General function prediction only	99.77
PRK12735	396	elongation factor Tu; Reviewed	99.77
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.77
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.76
CHL00071	409	tufA elongation factor Tu	99.76
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.76
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.76
COG2262	411	HflX GTPases [General function prediction only]	99.75
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.75
COG1084	346	Predicted GTPase [General function prediction only	99.75
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.75
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.75
PLN00043	447	elongation factor 1-alpha; Provisional	99.75
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.74
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.74
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.74
PTZ00141	446	elongation factor 1- alpha; Provisional	99.74
KOG1145	683	consensus Mitochondrial translation initiation fac	99.73
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.73
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.73
PLN03126	478	Elongation factor Tu; Provisional	99.72
PRK00049	396	elongation factor Tu; Reviewed	99.72
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.72
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.72
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.72
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.72
PLN03127	447	Elongation factor Tu; Provisional	99.71
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.71
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.69
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.69
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.69
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.68
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.68
PRK13351	687	elongation factor G; Reviewed	99.68
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.68
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.67
COG1163	365	DRG Predicted GTPase [General function prediction	99.67
COG0536	369	Obg Predicted GTPase [General function prediction	99.67
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.66
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.65
PRK12739	691	elongation factor G; Reviewed	99.65
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.64
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.64
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.62
PRK09866	741	hypothetical protein; Provisional	99.61
PRK00007	693	elongation factor G; Reviewed	99.6
PRK09602	396	translation-associated GTPase; Reviewed	99.59
COG3596	296	Predicted GTPase [General function prediction only	99.59
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.59
KOG0090	238	consensus Signal recognition particle receptor, be	99.58
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.58
PRK12740	668	elongation factor G; Reviewed	99.56
PRK14845	1049	translation initiation factor IF-2; Provisional	99.55
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.52
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.52
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.49
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.48
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.47
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.47
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.46
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.46
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.45
PRK13768	253	GTPase; Provisional	99.45
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.45
PRK07560	731	elongation factor EF-2; Reviewed	99.45
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.44
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.44
PTZ00258	390	GTP-binding protein; Provisional	99.43
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.42
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.42
PTZ00416	836	elongation factor 2; Provisional	99.42
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.4
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.4
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.4
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.39
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.38
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.38
PRK09601	364	GTP-binding protein YchF; Reviewed	99.36
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.35
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.35
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.34
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.31
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.3
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.29
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.29
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.28
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.28
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.26
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.26
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.21
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.21
KOG0410	410	consensus Predicted GTP binding protein [General f	99.21
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.2
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.18
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.15
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.14
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.14
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.11
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.1
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.1
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.09
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.08
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.08
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.06
KOG0460	449	consensus Mitochondrial translation elongation fac	99.04
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.04
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.03
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.03
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.99
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.99
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.97
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.96
PRK12289	352	GTPase RsgA; Reviewed	98.91
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.9
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.89
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.86
PRK12288	347	GTPase RsgA; Reviewed	98.85
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.84
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.83
PRK00098	298	GTPase RsgA; Reviewed	98.81
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.81
KOG1143	591	consensus Predicted translation elongation factor	98.79
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.76
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.75
KOG2486	320	consensus Predicted GTPase [General function predi	98.75
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.74
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.73
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.7
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.68
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.67
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.66
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.66
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.65
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.63
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.62
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.6
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.6
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.59
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.57
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.57
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.55
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.55
COG1161	322	Predicted GTPases [General function prediction onl	98.53
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.53
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.5
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.5
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.49
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.46
PRK10416	318	signal recognition particle-docking protein FtsY;	98.41
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.41
cd03112	158	CobW_like The function of this protein family is u	98.39
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.39
PRK12288	347	GTPase RsgA; Reviewed	98.39
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.37
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.37
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.35
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.35
PRK13796	365	GTPase YqeH; Provisional	98.34
PRK14974	336	cell division protein FtsY; Provisional	98.33
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.32
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.31
COG1162	301	Predicted GTPases [General function prediction onl	98.29
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.27
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.25
PRK12289	352	GTPase RsgA; Reviewed	98.25
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.22
COG0523	323	Putative GTPases (G3E family) [General function pr	98.22
PRK01889	356	GTPase RsgA; Reviewed	98.22
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	98.21
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.19
PRK13695	174	putative NTPase; Provisional	98.18
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.18
PRK13796	365	GTPase YqeH; Provisional	98.16
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.14
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.11
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.08
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.06
PRK00098	298	GTPase RsgA; Reviewed	98.02
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.0
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.98
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.97
cd03114	148	ArgK-like The function of this protein family is u	97.95
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.94
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.93
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.89
COG1162	301	Predicted GTPases [General function prediction onl	97.87
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.84
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.82
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.78
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.77
COG3523	1188	IcmF Type VI protein secretion system component Va	97.74
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.73
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.72
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.72
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.7
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.7
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.69
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.68
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.65
PRK10867	433	signal recognition particle protein; Provisional	97.62
TIGR00959	428	ffh signal recognition particle protein. This mode	97.61
KOG2484	435	consensus GTPase [General function prediction only	97.59
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.58
cd03111	106	CpaE_like This protein family consists of proteins	97.57
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.56
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.51
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.51
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.49
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.45
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.44
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.42
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.39
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.38
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.38
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.37
PRK14738	206	gmk guanylate kinase; Provisional	97.36
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.32
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.31
PRK08118	167	topology modulation protein; Reviewed	97.3
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.3
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.3
PRK07261	171	topology modulation protein; Provisional	97.29
COG1161	322	Predicted GTPases [General function prediction onl	97.28
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.24
KOG1533	290	consensus Predicted GTPase [General function predi	97.23
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.23
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.21
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.21
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.21
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.2
cd03110	179	Fer4_NifH_child This protein family's function is	97.14
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.11
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.1
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.09
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.07
COG4598	256	HisP ABC-type histidine transport system, ATPase c	97.05
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.03
PRK01889	356	GTPase RsgA; Reviewed	97.03
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.02
PRK14530	215	adenylate kinase; Provisional	97.02
PRK08233	182	hypothetical protein; Provisional	97.01
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.99
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.99
KOG2484	435	consensus GTPase [General function prediction only	96.98
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.98
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.97
PRK14737	186	gmk guanylate kinase; Provisional	96.94
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.94
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.94
cd02036	179	MinD Bacterial cell division requires the formatio	96.92
PRK06217	183	hypothetical protein; Validated	96.92
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.92
KOG2743	391	consensus Cobalamin synthesis protein [Coenzyme tr	96.9
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	96.9
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.89
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	96.88
smart00382	148	AAA ATPases associated with a variety of cellular	96.88
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	96.88
PF00004	132	AAA: ATPase family associated with various cellula	96.87
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.87
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.86
PRK05480	209	uridine/cytidine kinase; Provisional	96.84
PRK05541	176	adenylylsulfate kinase; Provisional	96.84
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	96.82
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	96.82
PRK03839	180	putative kinase; Provisional	96.82
KOG2423	572	consensus Nucleolar GTPase [General function predi	96.81
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.8
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.8
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.79
PRK13851	344	type IV secretion system protein VirB11; Provision	96.78
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	96.78
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.77
PTZ00088	229	adenylate kinase 1; Provisional	96.77
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.76
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.74
KOG3929	363	consensus Uncharacterized conserved protein [Funct	96.72
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.72
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.7
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.7

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-42  Score=241.00  Aligned_cols=200  Identities=80%  Similarity=1.173  Sum_probs=179.6

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.+|++++|..+|||||||.|+..+.|...|.+|+++++...++.+.+..+.+.+|||+||++|+.+.+.|++++.++|
T Consensus        20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav   99 (221)
T KOG0094|consen   20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   99 (221)
T ss_pred             ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCC-CCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGS-DVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      +|||+++..+|+....|+..+....+. ++.+++|+||.||.+.++...++.+..++++++.|+++|++.|.||..+|.-
T Consensus       100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrr  179 (221)
T KOG0094|consen  100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRR  179 (221)
T ss_pred             EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHH
Confidence            999999999999999999999998885 5889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCccCCcccc-cccccccccCCCCCCCCCCCCCCCCcC
Q 028466          166 IAAALPGMETLSSTKQ-EDLVDVNLKSSNTNTSQSQPQSGGCAC  208 (208)
Q Consensus       166 l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~c~~  208 (208)
                      |...+++....+.... ...+.++++++...+-.++  .++|||
T Consensus       180 Iaa~l~~~~~~~~~~~~~~~~~i~~k~~~~~~~~s~--~~~~~C  221 (221)
T KOG0094|consen  180 IAAALPGMEVLEILSKQESMVDINLKGSPNEQQASK--PGLCSC  221 (221)
T ss_pred             HHHhccCccccccccccccceeEEccCCCCcccccC--CCCCCC
Confidence            9999999987663433 3366777775533322212  456888

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-42  Score=241.94  Aligned_cols=175  Identities=41%  Similarity=0.683  Sum_probs=166.0

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.+||+|+|.+|||||+|+.||.++.|.+.+..|+++++..+.+.++++.+++.||||+|+++|+++...|++++|++|
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii   86 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   86 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCe-EEEeecCCCCCHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALFRK  165 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~v~~~~~~  165 (208)
                      +|||+++.+||..+.+|+.++..+...++|.++|+||+|+.+.+.+..++++.++.+++++ |+++||+++.+|+++|..
T Consensus        87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~  166 (205)
T KOG0084|consen   87 FVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLT  166 (205)
T ss_pred             EEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999998 999999999999999999


Q ss_pred             HHHHcCCCccCCcccc
Q 028466          166 IAAALPGMETLSSTKQ  181 (208)
Q Consensus       166 l~~~~~~~~~~~~~~~  181 (208)
                      |...+...........
T Consensus       167 la~~lk~~~~~~~~~~  182 (205)
T KOG0084|consen  167 LAKELKQRKGLHVKWS  182 (205)
T ss_pred             HHHHHHHhcccCCCCC
Confidence            9988866655544443

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.7e-41  Score=233.64  Aligned_cols=173  Identities=41%  Similarity=0.789  Sum_probs=164.9

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      ..++||+|+|..+||||||+-|+..+.|.+...+|++--+..+.+..++..+++.||||+|+++|..+.+.|+++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            46799999999999999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      +|||+++.+||..++.|+..+.....+++.+.||+||+|+.+.+++...++..++...++.|+++||+++.|++++|..|
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence            99999999999999999999998888888888999999999889999999999999999999999999999999999999


Q ss_pred             HHHcCCCccCCcc
Q 028466          167 AAALPGMETLSST  179 (208)
Q Consensus       167 ~~~~~~~~~~~~~  179 (208)
                      .+.++........
T Consensus       163 a~~lp~~~~~~~~  175 (200)
T KOG0092|consen  163 AEKLPCSDPQERQ  175 (200)
T ss_pred             HHhccCccccccc
Confidence            9999888776654

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.2e-39  Score=227.83  Aligned_cols=168  Identities=44%  Similarity=0.753  Sum_probs=162.9

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (208)
                      +....+||+++|.++||||+|+.+|..+.|...+..++++++...++..++..+.+.+|||+|++.|+.+...|++.|++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHH
Q 028466           85 AVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFR  164 (208)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~  164 (208)
                      +++|||+++..+|+.+..|+..+..+....+|++||+||+|+...+++..++.+++|.++|+.|+++||++|.||++.|-
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~  167 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL  167 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence            99999999999999999999999999988999999999999999899999999999999999999999999999999999


Q ss_pred             HHHHHcCC
Q 028466          165 KIAAALPG  172 (208)
Q Consensus       165 ~l~~~~~~  172 (208)
                      .|.+.+..
T Consensus       168 ~La~~i~~  175 (207)
T KOG0078|consen  168 SLARDILQ  175 (207)
T ss_pred             HHHHHHHh
Confidence            99999875

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-39  Score=223.58  Aligned_cols=170  Identities=39%  Similarity=0.683  Sum_probs=162.2

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      ....+|++++|..|||||+|+.+++...|.+.+..|.++++....+.++++.++++||||+|++.|+..+..|++.+.++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      |+|||+++.++|..+..|+..++++..+++.++|++||+|+...+++..++.++|++++++.++++||++++|++++|..
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n  162 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN  162 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence            99999999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCcc
Q 028466          166 IAAALPGMET  175 (208)
Q Consensus       166 l~~~~~~~~~  175 (208)
                      ....+++...
T Consensus       163 ta~~Iy~~~q  172 (216)
T KOG0098|consen  163 TAKEIYRKIQ  172 (216)
T ss_pred             HHHHHHHHHH
Confidence            9888765533

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=4.8e-39  Score=216.83  Aligned_cols=200  Identities=36%  Similarity=0.653  Sum_probs=174.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      ...+||+++|.+|||||+|+-+|+.+.|.+....+++.++..+.+.+++..+++.||||+|+++|+.++..|++.+.++|
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI   88 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII   88 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence            45699999999999999999999999999998888999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      +|||++.+++|..+..|+.++..+.. ++...++|+||+|...++.+..++...+++++++.|+++||++.++|+..|+.
T Consensus        89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fee  168 (209)
T KOG0080|consen   89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEE  168 (209)
T ss_pred             EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHH
Confidence            99999999999999999999987764 56777899999999878999999999999999999999999999999999999


Q ss_pred             HHHHcCCCccCCcccccccccccccCCCCCCCCCCCCCCCCcC
Q 028466          166 IAAALPGMETLSSTKQEDLVDVNLKSSNTNTSQSQPQSGGCAC  208 (208)
Q Consensus       166 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  208 (208)
                      +.+.+.+.+..+...... .+.++-+ ......+..+.++|+|
T Consensus       169 lveKIi~tp~l~~~~n~~-~~~~i~~-~p~~~~~~~~g~~Cs~  209 (209)
T KOG0080|consen  169 LVEKIIETPSLWEEGNSS-AGLDIAS-DPDGEASAHQGGCCSC  209 (209)
T ss_pred             HHHHHhcCcchhhccCCc-ccccccc-CCCcccccccCCccCC
Confidence            999999998888764322 2233322 1112233445566766

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.3e-36  Score=222.62  Aligned_cols=163  Identities=36%  Similarity=0.676  Sum_probs=150.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +.|+++|..|||||||+++|..+.|...+.++.+.++....+.+++..+.+.+|||+|++.|..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            46899999999999999999999998888899998888888899998899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc-CCeEEEeecCCCCCHHHHHHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL-NVMFIETSAKAGFNIKALFRKIAA  168 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~v~~~~~~l~~  168 (208)
                      |++++++|+.+..|+..+......+.|+++|+||+|+.+.+++...+.++++.+. ++.|+++||++|.|++++|++|.+
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999887766677999999999999877888888888888875 789999999999999999999998


Q ss_pred             HcCC
Q 028466          169 ALPG  172 (208)
Q Consensus       169 ~~~~  172 (208)
                      .+..
T Consensus       161 ~~~~  164 (202)
T cd04120         161 DILK  164 (202)
T ss_pred             HHHH
Confidence            8754

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=2.1e-37  Score=213.52  Aligned_cols=176  Identities=38%  Similarity=0.623  Sum_probs=162.1

Q ss_pred             CCCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhc
Q 028466            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (208)
Q Consensus         1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   80 (208)
                      |.+..+..-+||+++|.+|+|||||++++..++|...+-.+++.++..+.+.+++..+.+.||||+|+++|.++--.+++
T Consensus         1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR   80 (210)
T KOG0394|consen    1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR   80 (210)
T ss_pred             CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence            66666667799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC----CCCeEEEEEeCCCCcCc--cCcCHHHHHHHHHHcC-CeEEEeec
Q 028466           81 DSSVAVIVYDVASRQSFLNTTKWVEEVRTERG----SDVIIVLVGNKTDLVDK--RQVSIEEGEAKARELN-VMFIETSA  153 (208)
Q Consensus        81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~S~  153 (208)
                      ++|..++|||++++++|+.+..|..++.....    ...|+||++||+|+...  +.+....+..|+...+ ++|+++||
T Consensus        81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA  160 (210)
T KOG0394|consen   81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA  160 (210)
T ss_pred             CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence            99999999999999999999999999987765    45689999999998653  7888999999999886 89999999


Q ss_pred             CCCCCHHHHHHHHHHHcCCCccC
Q 028466          154 KAGFNIKALFRKIAAALPGMETL  176 (208)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~~~~  176 (208)
                      ++..||+++|..+.+.....+..
T Consensus       161 K~~~NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  161 KEATNVDEAFEEIARRALANEDR  183 (210)
T ss_pred             cccccHHHHHHHHHHHHHhccch
Confidence            99999999999999998776654

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=3.8e-36  Score=221.11  Aligned_cols=173  Identities=35%  Similarity=0.562  Sum_probs=152.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC-CeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      +||+|+|.+|||||||+++|+++.+...+.++.+.++....+.++ +..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999988888999888887778787 7788999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhc----CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC-CeEEEeecCCCCCHHHHH
Q 028466           89 YDVASRQSFLNTTKWVEEVRTER----GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF  163 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~~  163 (208)
                      ||++++++++.+..|+..+....    ..+.|++||+||.|+.+.......++.++++..+ ..++++||+++.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999998876532    2568999999999997666777888999999998 699999999999999999


Q ss_pred             HHHHHHcCCCccCCccccc
Q 028466          164 RKIAAALPGMETLSSTKQE  182 (208)
Q Consensus       164 ~~l~~~~~~~~~~~~~~~~  182 (208)
                      ++|.+.+.+..........
T Consensus       161 ~~l~~~l~~~~~~~~~~~~  179 (201)
T cd04107         161 RFLVKNILANDKNLQQAET  179 (201)
T ss_pred             HHHHHHHHHhchhhHhhcC
Confidence            9999988765544444333

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=7.4e-36  Score=216.64  Aligned_cols=164  Identities=35%  Similarity=0.596  Sum_probs=151.8

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      ..+||+++|..|||||||+.+|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.|..++..+++++|++|+
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill   84 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL   84 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence            56999999999999999999999999988888888888887888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      |||++++++|+.+..|+..+.... .+.|++||+||.|+...+.+...+++.+++..++.|+++||++|.||+++|++|.
T Consensus        85 VfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~  163 (189)
T cd04121          85 VYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELA  163 (189)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999999997664 5799999999999987778889999999999999999999999999999999999


Q ss_pred             HHcCC
Q 028466          168 AALPG  172 (208)
Q Consensus       168 ~~~~~  172 (208)
                      +.+..
T Consensus       164 ~~i~~  168 (189)
T cd04121         164 RIVLM  168 (189)
T ss_pred             HHHHH
Confidence            87753

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-36  Score=214.13  Aligned_cols=171  Identities=36%  Similarity=0.690  Sum_probs=162.8

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (208)
                      ....+.+||+++|.++||||-|+.|+..+.|..+..+|+++++....+.++++.++..||||+|+++|+.....|++.+.
T Consensus         9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv   88 (222)
T KOG0087|consen    9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV   88 (222)
T ss_pred             cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence            44568899999999999999999999999999888999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466           84 VAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF  163 (208)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (208)
                      ++++|||++...+|+.+..|+.+++.+...++++++|+||.||...+.+..++.+.++...+..|+++||++..|++++|
T Consensus        89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF  168 (222)
T KOG0087|consen   89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAF  168 (222)
T ss_pred             eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHH
Confidence            99999999999999999999999999999999999999999999888999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCc
Q 028466          164 RKIAAALPGME  174 (208)
Q Consensus       164 ~~l~~~~~~~~  174 (208)
                      ..++..+...-
T Consensus       169 ~~~l~~I~~~v  179 (222)
T KOG0087|consen  169 ERVLTEIYKIV  179 (222)
T ss_pred             HHHHHHHHHHH
Confidence            99988875543

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=2.3e-35  Score=218.95  Aligned_cols=167  Identities=38%  Similarity=0.694  Sum_probs=153.4

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      ...+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.|||++|++.+...+..++++++++|
T Consensus        10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i   89 (216)
T PLN03110         10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   89 (216)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence            36799999999999999999999999988788899998888888888888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      +|||++++++++.+..|+..+......+.|+++|+||.|+...+.....+...++..++++++++||+++.|++++|++|
T Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l  169 (216)
T PLN03110         90 LVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTI  169 (216)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999887766789999999999997777777888888988889999999999999999999999


Q ss_pred             HHHcCCC
Q 028466          167 AAALPGM  173 (208)
Q Consensus       167 ~~~~~~~  173 (208)
                      ...+.+.
T Consensus       170 ~~~i~~~  176 (216)
T PLN03110        170 LLEIYHI  176 (216)
T ss_pred             HHHHHHH
Confidence            9888653

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=4.7e-37  Score=204.52  Aligned_cols=184  Identities=39%  Similarity=0.649  Sum_probs=170.1

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      +-++.+|+|.+|+|||+|+-+|..+.|..+|..+++.++..+++.+++..+++.||||+|++.|+.+...|++..+++++
T Consensus         7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v   86 (198)
T KOG0079|consen    7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV   86 (198)
T ss_pred             HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      |||+++.+||.....|++.+.+.+. .+|-++|+||.|..+.+.+..++++.++...++.+|++|+++.+|++.+|..|.
T Consensus        87 VYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit  165 (198)
T KOG0079|consen   87 VYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCIT  165 (198)
T ss_pred             EEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHH
Confidence            9999999999999999999987764 789999999999998888999999999999999999999999999999999999


Q ss_pred             HHcCCCccCCcccccccccccccCC
Q 028466          168 AALPGMETLSSTKQEDLVDVNLKSS  192 (208)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~  192 (208)
                      +.+.........++.......+++.
T Consensus       166 ~qvl~~k~r~~~~~~r~~~~~l~~n  190 (198)
T KOG0079|consen  166 KQVLQAKLRESVEQQRADAVSLKDN  190 (198)
T ss_pred             HHHHHHHHhhcHHHHhhcceEeccC
Confidence            9988877666666666566666655

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=2e-35  Score=215.51  Aligned_cols=185  Identities=33%  Similarity=0.525  Sum_probs=153.4

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (208)
                      ||+|+|.+|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.|..++..+++.+|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            689999999999999999999998877777776443 3455677877889999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHhhcC---CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           91 VASRQSFLNTTKWVEEVRTERG---SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      ++++++++.+..|+..+.....   .+.|+++|+||+|+.....+...+...++..+++.++++||+++.|++++|+++.
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988876542   5689999999999977777777788888888899999999999999999999999


Q ss_pred             HHcCCCccCCcccccccccccccCCCCCCCCCCCCCCCCcC
Q 028466          168 AALPGMETLSSTKQEDLVDVNLKSSNTNTSQSQPQSGGCAC  208 (208)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  208 (208)
                      +.+.......            .++......++.|+.+|||
T Consensus       160 ~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~~  188 (190)
T cd04144         160 RALRQQRQGG------------QGPKGGPTKKKEKKKRKCV  188 (190)
T ss_pred             HHHHHhhccc------------CCCcCCCCCcccccccCce
Confidence            8874333222            1233444556777777776

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=7.6e-35  Score=213.83  Aligned_cols=169  Identities=37%  Similarity=0.671  Sum_probs=151.5

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      ..+||+|+|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++|+
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil   84 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV   84 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence            57999999999999999999999999888888888888877888888888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      |||++++++++.+..|+..+.... ...|++||+||.|+.+.......+...++...+..++++|++++.|++++|++|.
T Consensus        85 v~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~  163 (199)
T cd04110          85 VYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCIT  163 (199)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHH
Confidence            999999999999999999887654 5689999999999987666777888888888899999999999999999999999


Q ss_pred             HHcCCCccCC
Q 028466          168 AALPGMETLS  177 (208)
Q Consensus       168 ~~~~~~~~~~  177 (208)
                      ..+.......
T Consensus       164 ~~~~~~~~~~  173 (199)
T cd04110         164 ELVLRAKKDN  173 (199)
T ss_pred             HHHHHhhhcc
Confidence            9986654444

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=8.9e-35  Score=211.77  Aligned_cols=163  Identities=40%  Similarity=0.698  Sum_probs=149.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+++|.+|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++++|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999998778888888887778888888889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA  169 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (208)
                      |+++++++..+..|+..+......+.|+++|+||.|+.+...+...+...++...+++++++||+++.|++++|++|.+.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999987766678999999999998777777888888888889999999999999999999999999


Q ss_pred             cCC
Q 028466          170 LPG  172 (208)
Q Consensus       170 ~~~  172 (208)
                      +..
T Consensus       161 ~~~  163 (188)
T cd04125         161 IIK  163 (188)
T ss_pred             HHH
Confidence            853

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=4.7e-36  Score=202.95  Aligned_cols=166  Identities=40%  Similarity=0.708  Sum_probs=151.8

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC-CeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      ...++++++|.+-+|||+|++.++.+++++-.+|+++++++...+++. +..+++.+|||+|+++|++++..|++++-++
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv   85 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV   85 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence            357999999999999999999999999999999999999988887664 5678999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcC-CC-CeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTERG-SD-VIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF  163 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~-~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (208)
                      ++|||+++.++|+.+..|+.+...+.. +. +.+.+|++|.|+...+++..+++++++...+..|+++|+++|.||++.|
T Consensus        86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF  165 (213)
T KOG0091|consen   86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF  165 (213)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence            999999999999999999998776554 44 4467899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCC
Q 028466          164 RKIAAALPG  172 (208)
Q Consensus       164 ~~l~~~~~~  172 (208)
                      ..|.+.+..
T Consensus       166 ~mlaqeIf~  174 (213)
T KOG0091|consen  166 DMLAQEIFQ  174 (213)
T ss_pred             HHHHHHHHH
Confidence            999887643

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=1.1e-34  Score=211.75  Aligned_cols=167  Identities=42%  Similarity=0.731  Sum_probs=148.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      +||+|+|.+|||||||+++|.++.+.. .+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999998853 5677777777777778888889999999999999999889999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466           89 YDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA  168 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (208)
                      ||++++++++.+..|+..+......+.|+++|+||.|+...+.....+.+.++..++.+++++|++++.|++++|.+|.+
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999988776567899999999999766667777888888888999999999999999999999999


Q ss_pred             HcCCCccC
Q 028466          169 ALPGMETL  176 (208)
Q Consensus       169 ~~~~~~~~  176 (208)
                      .+.+....
T Consensus       161 ~~~~~~~~  168 (191)
T cd04112         161 ELKHRKYE  168 (191)
T ss_pred             HHHHhccc
Confidence            98766544

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=5.1e-35  Score=216.45  Aligned_cols=168  Identities=33%  Similarity=0.556  Sum_probs=142.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+|+|.+|||||||+++|+.+.+.. +.++.+.++.....    ..+.+.||||+|++.|..++..+++++|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999999875 46666655544332    3478999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC-------------------ccCcCHHHHHHHHHHcC-----
Q 028466           90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD-------------------KRQVSIEEGEAKARELN-----  145 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~-----  145 (208)
                      |++++++|+.+..|+..+......+.|+|||+||.|+.+                   .+++..++++.++.+.+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999888888766556789999999999965                   46777889999998876     


Q ss_pred             ---------CeEEEeecCCCCCHHHHHHHHHHHcCCCccCCccccc
Q 028466          146 ---------VMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQE  182 (208)
Q Consensus       146 ---------~~~~~~S~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~  182 (208)
                               +.|+++||++|.||+++|..+.+.+.........+..
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~  201 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEAN  201 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhh
Confidence                     6899999999999999999999988766555544433

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=1.4e-34  Score=206.64  Aligned_cols=163  Identities=35%  Similarity=0.662  Sum_probs=149.4

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      .+||+++|++|||||||+++|..+.+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999999888888888788777788888888999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466           89 YDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA  168 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (208)
                      ||++++++++.+..|+..+......+.|+++|+||.|+....+....+++.++...+++++++||++|.|++++|..+.+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999887766677899999999999877777888999999999999999999999999999999987


Q ss_pred             HcC
Q 028466          169 ALP  171 (208)
Q Consensus       169 ~~~  171 (208)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd04122         162 KIY  164 (166)
T ss_pred             HHh
Confidence            764

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=3.4e-34  Score=213.18  Aligned_cols=168  Identities=28%  Similarity=0.483  Sum_probs=148.0

Q ss_pred             CCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccC
Q 028466            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   82 (208)
Q Consensus         3 ~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   82 (208)
                      |......+||+++|..|||||+|+.+|..+.|...+.++.+.++. ..+.+++..+.+.||||+|++.|..+...+++++
T Consensus         7 ~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~a   85 (232)
T cd04174           7 PQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS   85 (232)
T ss_pred             CcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCC
Confidence            344456899999999999999999999999999888899876654 4577888899999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCeEEEEEeCCCCcC------------ccCcCHHHHHHHHHHcCC-eE
Q 028466           83 SVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVD------------KRQVSIEEGEAKARELNV-MF  148 (208)
Q Consensus        83 d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~  148 (208)
                      |++|+|||++++++|+. +..|+..+.... .+.|++||+||.|+.+            .+.+..+++++++.++++ .|
T Consensus        86 d~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~  164 (232)
T cd04174          86 DAVLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVY  164 (232)
T ss_pred             cEEEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEE
Confidence            99999999999999998 589999888655 4689999999999854            256788899999999998 69


Q ss_pred             EEeecCCCC-CHHHHHHHHHHHcCC
Q 028466          149 IETSAKAGF-NIKALFRKIAAALPG  172 (208)
Q Consensus       149 ~~~S~~~~~-~v~~~~~~l~~~~~~  172 (208)
                      +++||++|. |++++|..+...+.+
T Consensus       165 ~EtSAktg~~~V~e~F~~~~~~~~~  189 (232)
T cd04174         165 LECSAFTSEKSIHSIFRSASLLCLN  189 (232)
T ss_pred             EEccCCcCCcCHHHHHHHHHHHHHH
Confidence            999999998 899999999887654

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=3.4e-34  Score=212.72  Aligned_cols=164  Identities=39%  Similarity=0.602  Sum_probs=148.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECC-eEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      +||+++|.+|||||||+++|.++.+...+.++.+.++....+.+++ ..+.+.||||+|++.+..++..+++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999888899999888888887764 468999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcC---CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           89 YDVASRQSFLNTTKWVEEVRTERG---SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      ||++++++++.+..|+..+.....   .+.|+++|+||.|+.+.++....+...+++.+++.++++||++|+|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999887643   35689999999999777777888889999999999999999999999999999


Q ss_pred             HHHHcCCC
Q 028466          166 IAAALPGM  173 (208)
Q Consensus       166 l~~~~~~~  173 (208)
                      |.+.+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99988654

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=1.7e-34  Score=207.40  Aligned_cols=160  Identities=37%  Similarity=0.594  Sum_probs=143.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+++|.+|||||+|+.++..+.|..++.++.+..+ ...+.+++..+.+.||||+|++.|..+...+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            6899999999999999999999999888889887655 455678888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCcc----------CcCHHHHHHHHHHcCC-eEEEeecCCCC
Q 028466           90 DVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDKR----------QVSIEEGEAKARELNV-MFIETSAKAGF  157 (208)
Q Consensus        90 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~S~~~~~  157 (208)
                      |++++++|+.+ ..|+..+.... .+.|++||+||+|+.+.+          .+...++.++++.+++ .|+++||+++.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 68999987665 479999999999996542          4778899999999998 69999999999


Q ss_pred             CHHHHHHHHHHHcC
Q 028466          158 NIKALFRKIAAALP  171 (208)
Q Consensus       158 ~v~~~~~~l~~~~~  171 (208)
                      ||+++|+.+.+.+.
T Consensus       160 nV~~~F~~~~~~~~  173 (176)
T cd04133         160 NVKAVFDAAIKVVL  173 (176)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998763

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=1.2e-33  Score=208.99  Aligned_cols=165  Identities=39%  Similarity=0.720  Sum_probs=147.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEE-CCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      .+||+|+|.+|||||||+++|+++.+...+.++.+.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999999998888888888887777766 4566789999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      |||++++++++.+..|+..+..... ...|++||+||.|+.+...+...+...+++.+++.++++|++++.|++++|++|
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999876643 457889999999998777778888899999999999999999999999999999


Q ss_pred             HHHcCCC
Q 028466          167 AAALPGM  173 (208)
Q Consensus       167 ~~~~~~~  173 (208)
                      .+.+.+.
T Consensus       162 ~~~~~~~  168 (211)
T cd04111         162 TQEIYER  168 (211)
T ss_pred             HHHHHHH
Confidence            9877544

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=6.6e-34  Score=202.25  Aligned_cols=160  Identities=39%  Similarity=0.669  Sum_probs=147.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+++|++|+|||||+++++.+.+.+.+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999998888899888888788888888889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA  169 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (208)
                      |++++++++.+..|+..+......+.|+++|+||.|+.+.+.+...+...+++..+.+++++||+++.|++++|.+|.++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999999887665679999999999998777777889999999899999999999999999999999875

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=6.1e-34  Score=203.60  Aligned_cols=164  Identities=42%  Similarity=0.742  Sum_probs=150.0

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      ..+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            46899999999999999999999999988888998888877788888888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      |||+++++++..+..|+..+......+.|+++|+||.|+.+.......+...++...+.+++++||+++.|++++|.+|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  161 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA  161 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999999876656799999999999987666777788888888899999999999999999999999


Q ss_pred             HHcC
Q 028466          168 AALP  171 (208)
Q Consensus       168 ~~~~  171 (208)
                      +.+.
T Consensus       162 ~~~~  165 (167)
T cd01867         162 KDIK  165 (167)
T ss_pred             HHHH
Confidence            8874

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=4.9e-34  Score=206.14  Aligned_cols=162  Identities=27%  Similarity=0.507  Sum_probs=145.0

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      ...+||+++|..|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.|..+...+++++|++|
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            4579999999999999999999999999888888887555 456778888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcC------------ccCcCHHHHHHHHHHcCC-eEEEee
Q 028466           87 IVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVD------------KRQVSIEEGEAKARELNV-MFIETS  152 (208)
Q Consensus        87 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S  152 (208)
                      +|||++++++|+.+ ..|+..+.... ++.|++||+||.|+.+            .+.+...+++++++++++ .|+++|
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S  160 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  160 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence            99999999999997 79999988765 5799999999999854            245788999999999996 899999


Q ss_pred             cCCCCC-HHHHHHHHHHHc
Q 028466          153 AKAGFN-IKALFRKIAAAL  170 (208)
Q Consensus       153 ~~~~~~-v~~~~~~l~~~~  170 (208)
                      |+++.| |+++|..+.+..
T Consensus       161 Ak~~~n~v~~~F~~~~~~~  179 (182)
T cd04172         161 ALQSENSVRDIFHVATLAC  179 (182)
T ss_pred             cCCCCCCHHHHHHHHHHHH
Confidence            999998 999999998854

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=7.7e-34  Score=202.71  Aligned_cols=162  Identities=38%  Similarity=0.718  Sum_probs=146.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+++|.+|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+|||+|++.+...+..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999998888888887777777777777789999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA  169 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (208)
                      |++++++++.+..|+..+......+.|+++|+||+|+.+.+.....+..+++..++++++++||+++.|++++|++|...
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999877665678999999999997776677778888888889999999999999999999999987


Q ss_pred             cC
Q 028466          170 LP  171 (208)
Q Consensus       170 ~~  171 (208)
                      +.
T Consensus       162 ~~  163 (165)
T cd01865         162 IC  163 (165)
T ss_pred             HH
Confidence            64

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=3.3e-34  Score=208.86  Aligned_cols=165  Identities=33%  Similarity=0.556  Sum_probs=145.7

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      +.++||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii   81 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL   81 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence            5679999999999999999999999998877777776444 456677888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      +|||++++++++.+..|+..+..... .+.|+++|+||.|+.+...+...+...++..++.+++++||+++.|++++|.+
T Consensus        82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~  161 (189)
T PTZ00369         82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE  161 (189)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence            99999999999999999998876543 57899999999999766666777788888888899999999999999999999


Q ss_pred             HHHHcCC
Q 028466          166 IAAALPG  172 (208)
Q Consensus       166 l~~~~~~  172 (208)
                      |.+.+.+
T Consensus       162 l~~~l~~  168 (189)
T PTZ00369        162 LVREIRK  168 (189)
T ss_pred             HHHHHHH
Confidence            9988753

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=7.5e-34  Score=207.20  Aligned_cols=163  Identities=33%  Similarity=0.522  Sum_probs=142.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      |+.+||+++|..|||||||+.++..+.|...+.++.+..+ ...+.+++..+.+.+|||+|++.|..++..+++++|++|
T Consensus         1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~i   79 (191)
T cd01875           1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFI   79 (191)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEE
Confidence            3569999999999999999999999999888888887554 345567888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCcc------------CcCHHHHHHHHHHcC-CeEEEee
Q 028466           87 IVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKR------------QVSIEEGEAKARELN-VMFIETS  152 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~S  152 (208)
                      +|||++++++|+.+. .|+..+.... .+.|++||+||.|+.+..            .+...+++.+++.++ ..|+++|
T Consensus        80 lvydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~S  158 (191)
T cd01875          80 ICFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECS  158 (191)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeC
Confidence            999999999999986 5887776543 579999999999996432            355678889999988 5899999


Q ss_pred             cCCCCCHHHHHHHHHHHcC
Q 028466          153 AKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       153 ~~~~~~v~~~~~~l~~~~~  171 (208)
                      |++|.|++++|.+|.+.+.
T Consensus       159 Ak~g~~v~e~f~~l~~~~~  177 (191)
T cd01875         159 ALNQDGVKEVFAEAVRAVL  177 (191)
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            9999999999999998874

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.5e-35  Score=193.52  Aligned_cols=168  Identities=36%  Similarity=0.677  Sum_probs=158.7

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      ...+|++|+|.+.+|||||+.++.+..|...+.++.++++..+++.-..+++.+.+|||.|++.|+.+...++++++++|
T Consensus        19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi   98 (193)
T KOG0093|consen   19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   98 (193)
T ss_pred             cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence            34579999999999999999999999999999999999999999877788899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      ++||+++.++|..++.|...+..+.-.+.|+|+|+||+|+.+++.+..++.+.++.++|..|+++|++.+.||+.+|+.+
T Consensus        99 LmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~l  178 (193)
T KOG0093|consen   99 LMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERL  178 (193)
T ss_pred             EEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHH
Confidence            99999999999999999999998887899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCc
Q 028466          167 AAALPGME  174 (208)
Q Consensus       167 ~~~~~~~~  174 (208)
                      ...+.+..
T Consensus       179 v~~Ic~km  186 (193)
T KOG0093|consen  179 VDIICDKM  186 (193)
T ss_pred             HHHHHHHh
Confidence            98875443

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=6.1e-34  Score=204.41  Aligned_cols=164  Identities=33%  Similarity=0.529  Sum_probs=145.6

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      +.+||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|+
T Consensus         1 ~~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~il   79 (172)
T cd04141           1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFII   79 (172)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEE
Confidence            358999999999999999999999999887778876444 4456778888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      |||++++++++.+..|+..+..... .+.|+++|+||.|+...+++...+...+++..+++|+++||+++.|++++|++|
T Consensus        80 v~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l  159 (172)
T cd04141          80 CYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL  159 (172)
T ss_pred             EEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence            9999999999999988887776533 579999999999997777788888999999999999999999999999999999


Q ss_pred             HHHcCC
Q 028466          167 AAALPG  172 (208)
Q Consensus       167 ~~~~~~  172 (208)
                      .+.+.+
T Consensus       160 ~~~~~~  165 (172)
T cd04141         160 VREIRR  165 (172)
T ss_pred             HHHHHH
Confidence            987753

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-34  Score=193.86  Aligned_cols=166  Identities=39%  Similarity=0.670  Sum_probs=157.1

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (208)
                      ....-+|++++|+.|+|||+|+.+|+.+++.+....++++++.+..++..++.+++.||||+|+++|+...+.|++.+.+
T Consensus         5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAG   84 (214)
T KOG0086|consen    5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG   84 (214)
T ss_pred             hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHH
Q 028466           85 AVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFR  164 (208)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~  164 (208)
                      .++|||+++.++|+.+..|+..++....+++-+++++||.|+.+++++...++..++.+..+.++++|+++|+|+++.|-
T Consensus        85 AlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl  164 (214)
T KOG0086|consen   85 ALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL  164 (214)
T ss_pred             eEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHH
Confidence            99999999999999999999999999888888999999999999999999999999999999999999999999999887


Q ss_pred             HHHHHc
Q 028466          165 KIAAAL  170 (208)
Q Consensus       165 ~l~~~~  170 (208)
                      .....+
T Consensus       165 ~c~~tI  170 (214)
T KOG0086|consen  165 KCARTI  170 (214)
T ss_pred             HHHHHH
Confidence            666554

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=1.3e-33  Score=201.70  Aligned_cols=163  Identities=42%  Similarity=0.742  Sum_probs=148.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      .+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            48999999999999999999999998888888888888878888888888999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466           89 YDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA  168 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (208)
                      ||+++++++..+..|+..+......+.|+++|+||.|+.........++..++...+++++++|++++.|++++|.+|.+
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999999988766567899999999999777777788889999999999999999999999999999998


Q ss_pred             HcC
Q 028466          169 ALP  171 (208)
Q Consensus       169 ~~~  171 (208)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd01869         162 EIK  164 (166)
T ss_pred             HHH
Confidence            763

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=2.4e-33  Score=207.33  Aligned_cols=167  Identities=37%  Similarity=0.695  Sum_probs=151.0

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      ...+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            45799999999999999999999999888777888888887888888888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      +|||+++++++..+..|+..+......+.|+++|+||.|+...+.....+..++++.+++.++++|++++.|++++|.++
T Consensus        84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l  163 (210)
T PLN03108         84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (210)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999988876666679999999999997777778888999999999999999999999999999999


Q ss_pred             HHHcCCC
Q 028466          167 AAALPGM  173 (208)
Q Consensus       167 ~~~~~~~  173 (208)
                      .+.+.+.
T Consensus       164 ~~~~~~~  170 (210)
T PLN03108        164 AAKIYKK  170 (210)
T ss_pred             HHHHHHH
Confidence            9877543

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=1.2e-33  Score=203.65  Aligned_cols=160  Identities=28%  Similarity=0.526  Sum_probs=142.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      ++||+++|..|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.|..+...+++++|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            47999999999999999999999999888888887655 35677888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcC------------ccCcCHHHHHHHHHHcCC-eEEEeecC
Q 028466           89 YDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVD------------KRQVSIEEGEAKARELNV-MFIETSAK  154 (208)
Q Consensus        89 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S~~  154 (208)
                      ||++++++|+.+ ..|+..+.... .+.|+++|+||.|+.+            .+.+...+++++++++++ .|+++||+
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            999999999995 78999888765 5789999999999854            235778899999999997 89999999


Q ss_pred             CCCC-HHHHHHHHHHHc
Q 028466          155 AGFN-IKALFRKIAAAL  170 (208)
Q Consensus       155 ~~~~-v~~~~~~l~~~~  170 (208)
                      ++++ ++++|..+.+..
T Consensus       159 ~~~~~v~~~F~~~~~~~  175 (178)
T cd04131         159 TSEKSVRDIFHVATMAC  175 (178)
T ss_pred             cCCcCHHHHHHHHHHHH
Confidence            9995 999999998854

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=2e-33  Score=200.67  Aligned_cols=162  Identities=31%  Similarity=0.598  Sum_probs=147.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+++|++|||||||+++|+++.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999998888999998888888888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcC-----CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTERG-----SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFR  164 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~-----~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~  164 (208)
                      |++++++++.+..|+..+.....     .+.|+++|+||.|+.+.......+...++...+++++++||+++.|++++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999877653     4689999999999976566778888888888889999999999999999999


Q ss_pred             HHHHHcC
Q 028466          165 KIAAALP  171 (208)
Q Consensus       165 ~l~~~~~  171 (208)
                      +|.+.+.
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998763

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=3.3e-33  Score=199.40  Aligned_cols=162  Identities=41%  Similarity=0.705  Sum_probs=146.9

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      +.+||+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999999999888888888878877888888887899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~l  166 (208)
                      |||++++++++.+..|+..+......+.|+++|+||+|+...++....++..+++.++. .++++|+++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l  161 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM  161 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999876666799999999999977777777888888888885 78999999999999999999


Q ss_pred             HHH
Q 028466          167 AAA  169 (208)
Q Consensus       167 ~~~  169 (208)
                      .+.
T Consensus       162 ~~~  164 (165)
T cd01864         162 ATE  164 (165)
T ss_pred             HHh
Confidence            875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=1.4e-33  Score=204.02  Aligned_cols=166  Identities=23%  Similarity=0.512  Sum_probs=144.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+++|..|||||||+++|+++.+...+.++.+.++....+..++..+.+.+||++|++.|..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998888999988888788888888889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc-----cCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK-----RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFR  164 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~  164 (208)
                      |++++++++.+..|+..+........| ++|+||.|+...     .+....+...++...++.++++||+++.|++++|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999998876555566 678999998521     11224566778888889999999999999999999


Q ss_pred             HHHHHcCCCccC
Q 028466          165 KIAAALPGMETL  176 (208)
Q Consensus       165 ~l~~~~~~~~~~  176 (208)
                      ++.+.+.+.+..
T Consensus       160 ~l~~~l~~~~~~  171 (182)
T cd04128         160 IVLAKAFDLPLT  171 (182)
T ss_pred             HHHHHHHhcCCC
Confidence            999988765443

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=1.8e-33  Score=203.53  Aligned_cols=164  Identities=39%  Similarity=0.652  Sum_probs=146.6

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC----------CeEEEEEEEecCCchhhccchhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE----------DRTVRLQLWDTAGQERFRSLIPS   77 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~~   77 (208)
                      +.+||+++|++|||||||++++..+.+...+.++.+.++....+.+.          +..+.+.+|||||++.+...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            56999999999999999999999999988888888877776666554          35678999999999999999999


Q ss_pred             hhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCC
Q 028466           78 YIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAG  156 (208)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  156 (208)
                      +++++|++|+|||+++++++..+..|+..+..... .+.|+++|+||.|+.+.+.....++..++..++++++++||+++
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~  162 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG  162 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence            99999999999999999999999999998876543 57899999999999877777888899999999999999999999


Q ss_pred             CCHHHHHHHHHHHcC
Q 028466          157 FNIKALFRKIAAALP  171 (208)
Q Consensus       157 ~~v~~~~~~l~~~~~  171 (208)
                      .|++++|++|.+.+.
T Consensus       163 ~~v~~l~~~l~~~~~  177 (180)
T cd04127         163 TNVEKAVERLLDLVM  177 (180)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999998763

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=3.1e-33  Score=198.88  Aligned_cols=160  Identities=44%  Similarity=0.772  Sum_probs=152.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (208)
                      ||+++|++|||||||+++|.++.+...+.++.+.+.....+..++..+.+.+||++|++.+..+...+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999998889999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHHc
Q 028466           91 VASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~  170 (208)
                      ++++++++.+..|+..+......+.|++||+||.|+.+.+++..++++.+++++++.|+++|++++.|+.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999988876799999999999988788999999999999999999999999999999999999876

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=4.8e-33  Score=198.51  Aligned_cols=163  Identities=37%  Similarity=0.747  Sum_probs=148.6

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      ..+||+++|.+|||||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..++++++++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            35899999999999999999999999887888888888888888888888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      |||++++.++..+..|+..+......+.|+++|+||.|+...++....+...++...++.++++||+++.|++++|++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999998877666799999999999977677777888888888889999999999999999999998


Q ss_pred             HHc
Q 028466          168 AAL  170 (208)
Q Consensus       168 ~~~  170 (208)
                      +.+
T Consensus       162 ~~i  164 (165)
T cd01868         162 TEI  164 (165)
T ss_pred             HHh
Confidence            765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=3.3e-33  Score=198.82  Aligned_cols=161  Identities=36%  Similarity=0.576  Sum_probs=141.3

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      ++||+++|.+|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+|||||++.|..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   79 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence            47999999999999999999999988777777765 44456677888888999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           89 YDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      ||++++++++.+..|+..+..... .+.|+++|+||.|+.+.......+...+++.++.+++++||+++.|++++|++|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04136          80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999988876543 5789999999999976666667777778888889999999999999999999998


Q ss_pred             HHc
Q 028466          168 AAL  170 (208)
Q Consensus       168 ~~~  170 (208)
                      +.+
T Consensus       160 ~~~  162 (163)
T cd04136         160 RQI  162 (163)
T ss_pred             Hhc
Confidence            765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=6.9e-33  Score=205.20  Aligned_cols=162  Identities=25%  Similarity=0.503  Sum_probs=140.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      ++||+|+|..|||||+|+.+|..+.++..+.++.+..+. ..+.+++..+.+.||||+|++.|..++..+++++|++|+|
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv   79 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC   79 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence            479999999999999999999999999888898875553 5677888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcCC-eEEEeecC
Q 028466           89 YDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELNV-MFIETSAK  154 (208)
Q Consensus        89 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~  154 (208)
                      ||++++++|+.+ ..|...+.. ...+.|++||+||+|+.++            ..+..++...++++.++ .|+++||+
T Consensus        80 fdis~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk  158 (222)
T cd04173          80 FDISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR  158 (222)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence            999999999998 456665544 3467999999999999542            13567789999999996 89999999


Q ss_pred             CCCC-HHHHHHHHHHHcCC
Q 028466          155 AGFN-IKALFRKIAAALPG  172 (208)
Q Consensus       155 ~~~~-v~~~~~~l~~~~~~  172 (208)
                      ++.+ |+++|.........
T Consensus       159 ~~~~~V~~~F~~~~~~~~~  177 (222)
T cd04173         159 SSERSVRDVFHVATVASLG  177 (222)
T ss_pred             cCCcCHHHHHHHHHHHHHh
Confidence            9985 99999999986544

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=6.4e-33  Score=197.09  Aligned_cols=161  Identities=40%  Similarity=0.730  Sum_probs=147.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888888788888888889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA  169 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (208)
                      |+++++++..+..|+..+......+.|+++|+||.|+.+..+....++..++...+..++++|++++.|++++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998877766789999999999998777778888899999999999999999999999999999875


Q ss_pred             c
Q 028466          170 L  170 (208)
Q Consensus       170 ~  170 (208)
                      +
T Consensus       161 ~  161 (161)
T cd04113         161 I  161 (161)
T ss_pred             C
Confidence            3

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=9.5e-33  Score=201.88  Aligned_cols=164  Identities=37%  Similarity=0.656  Sum_probs=142.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      +||+|+|.+|||||||+++|+++.+.. .+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999998874 5778887777777888888888999999999999999998999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc----cCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHH
Q 028466           89 YDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK----RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFR  164 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~  164 (208)
                      ||++++++++.+..|+..+.... .+.|+++|+||.|+.+.    .++...++..++..+++.++++|++++.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999998887643 46899999999998542    23445667788888889999999999999999999


Q ss_pred             HHHHHcCCCc
Q 028466          165 KIAAALPGME  174 (208)
Q Consensus       165 ~l~~~~~~~~  174 (208)
                      +|.+.+....
T Consensus       160 ~i~~~~~~~~  169 (193)
T cd04118         160 KVAEDFVSRA  169 (193)
T ss_pred             HHHHHHHHhc
Confidence            9999886443

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=1.1e-32  Score=204.19  Aligned_cols=170  Identities=38%  Similarity=0.653  Sum_probs=145.1

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      ...+||+|+|.+|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus        12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v   90 (211)
T PLN03118         12 DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII   90 (211)
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            35799999999999999999999988774 45677777777777778888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHH-HHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHH
Q 028466           87 IVYDVASRQSFLNTTK-WVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFR  164 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~  164 (208)
                      +|||++++++++.+.. |...+.... ..+.|+++|+||.|+.........+...++..+++.|+++|++++.|++++|+
T Consensus        91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~  170 (211)
T PLN03118         91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFE  170 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999866 545444332 24578999999999977667777788888888899999999999999999999


Q ss_pred             HHHHHcCCCccCC
Q 028466          165 KIAAALPGMETLS  177 (208)
Q Consensus       165 ~l~~~~~~~~~~~  177 (208)
                      +|.+.+.+.+..-
T Consensus       171 ~l~~~~~~~~~~~  183 (211)
T PLN03118        171 ELALKIMEVPSLL  183 (211)
T ss_pred             HHHHHHHhhhhhh
Confidence            9999997765443

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=8.6e-33  Score=197.83  Aligned_cols=163  Identities=39%  Similarity=0.725  Sum_probs=148.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      .+||+|+|.+|+|||||++++.++.+...+.++.+.++....+..++....+.+||+||++.+..+...+++.+|++++|
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v   83 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   83 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999988877778888888778888888888999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466           89 YDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA  168 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (208)
                      ||+++++++..+..|+..+......+.|+++|+||.|+.........+.+.++...++.++++|++++.|++++|.++.+
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~  163 (168)
T cd01866          84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAK  163 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998776678999999999999766677788888899999999999999999999999999998


Q ss_pred             HcC
Q 028466          169 ALP  171 (208)
Q Consensus       169 ~~~  171 (208)
                      .+.
T Consensus       164 ~~~  166 (168)
T cd01866         164 EIY  166 (168)
T ss_pred             HHH
Confidence            764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=6.5e-33  Score=206.09  Aligned_cols=164  Identities=32%  Similarity=0.589  Sum_probs=145.6

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      +..+||+++|.+|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.|..++..+++++|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            77899999999999999999999999998888999988888877777777889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      +|||++++++++.+..|+..+.... .+.|+++|+||.|+.. ......++ .+++..++.|+++||+++.|++++|.+|
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l  167 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence            9999999999999999999988654 5799999999999853 33334444 6677778999999999999999999999


Q ss_pred             HHHcCCC
Q 028466          167 AAALPGM  173 (208)
Q Consensus       167 ~~~~~~~  173 (208)
                      .+.+.+.
T Consensus       168 ~~~~~~~  174 (219)
T PLN03071        168 ARKLAGD  174 (219)
T ss_pred             HHHHHcC
Confidence            9988654

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=8.1e-33  Score=198.23  Aligned_cols=163  Identities=37%  Similarity=0.631  Sum_probs=144.2

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (208)
                      ||+++|.+|||||||+++++++.+...+.++.+.++....+.+++..+.+.+|||||++.|..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999998899999888887888888888899999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccC--cCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           91 VASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQ--VSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      +++++++..+..|+..+..... ...|+++|+||.|+.+...  ....+...++.+++.+++++||+++.|++++|+.|.
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999998865543 4578999999999865433  335566778888889999999999999999999999


Q ss_pred             HHcCCC
Q 028466          168 AALPGM  173 (208)
Q Consensus       168 ~~~~~~  173 (208)
                      +.+.++
T Consensus       162 ~~~~~~  167 (170)
T cd04108         162 ALTFEL  167 (170)
T ss_pred             HHHHHc
Confidence            988543

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=6.3e-33  Score=201.85  Aligned_cols=166  Identities=31%  Similarity=0.462  Sum_probs=140.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC-CeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      +||+|+|.+|+|||||+++|.++.+...+.++.+.++... +... +..+.+.+|||||++.+..++..+++++|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            5899999999999999999999999888888877665443 4444 6678899999999999999999999999999999


Q ss_pred             EeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCcc----CcCHHHHHHHHHHcCC-eEEEeecCCCCCHHHH
Q 028466           89 YDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKR----QVSIEEGEAKARELNV-MFIETSAKAGFNIKAL  162 (208)
Q Consensus        89 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~  162 (208)
                      ||++++++++.+. .|+..+... ..+.|+++|+||.|+....    .+...++.+++..+++ .++++||+++.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999975 587776644 3578999999999986532    4567788889999988 9999999999999999


Q ss_pred             HHHHHHHcCCCccCC
Q 028466          163 FRKIAAALPGMETLS  177 (208)
Q Consensus       163 ~~~l~~~~~~~~~~~  177 (208)
                      |..+.+.+.......
T Consensus       159 f~~l~~~~~~~~~~~  173 (187)
T cd04132         159 FDTAIEEALKKEGKA  173 (187)
T ss_pred             HHHHHHHHHhhhhhh
Confidence            999999986444333

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=6.6e-33  Score=197.65  Aligned_cols=162  Identities=33%  Similarity=0.569  Sum_probs=142.3

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      ++||+++|.+|+|||||+++++.+.+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++++|++|+|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            47999999999999999999999888777777776443 45677788888999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           89 YDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      ||++++++++.+..|+..+.... ..+.|+++|+||.|+.+.......+...+++.++++++++||+++.|++++|.+|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999887654 36799999999999977666667777888888889999999999999999999999


Q ss_pred             HHcC
Q 028466          168 AALP  171 (208)
Q Consensus       168 ~~~~  171 (208)
                      +.+.
T Consensus       160 ~~l~  163 (164)
T cd04175         160 RQIN  163 (164)
T ss_pred             HHhh
Confidence            8763

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=1.5e-32  Score=195.26  Aligned_cols=159  Identities=40%  Similarity=0.724  Sum_probs=143.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC--CeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE--DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      +||+++|.+|+|||||+++++++.+...+.++.+.++....+.+.  +..+.+.+|||||++.+...+..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999999888888888888877777776  677899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      |||++++++++.+..|+..+.... .+.|+++|+||.|+..+..+..+++..+++.++++++++|++++.|++++|++|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999998886544 5799999999999977777777888899999999999999999999999999997


Q ss_pred             HH
Q 028466          168 AA  169 (208)
Q Consensus       168 ~~  169 (208)
                      ..
T Consensus       160 ~~  161 (162)
T cd04106         160 EK  161 (162)
T ss_pred             Hh
Confidence            64

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.5e-32  Score=196.24  Aligned_cols=162  Identities=34%  Similarity=0.606  Sum_probs=141.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+......++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999999888888888888887777777888889999999999999998889999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA  169 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (208)
                      |+++++++..+..|+..+..... +.|+++|+||.|+.. .... .+...++...++.++++||+++.|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99999999999999999987664 799999999999963 2332 34455666777899999999999999999999998


Q ss_pred             cCCCc
Q 028466          170 LPGME  174 (208)
Q Consensus       170 ~~~~~  174 (208)
                      +.+.+
T Consensus       158 ~~~~~  162 (166)
T cd00877         158 LLGNP  162 (166)
T ss_pred             HHhcc
Confidence            86544

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.5e-34  Score=189.95  Aligned_cols=163  Identities=40%  Similarity=0.695  Sum_probs=154.8

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      .-+||+++|..|+|||+|++++..+-|++.-..++++++..+++++++..+++.||||+|+++|+++...|++.++++|+
T Consensus         6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil   85 (213)
T KOG0095|consen    6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (213)
T ss_pred             eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence            35899999999999999999999999998888999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      |||++...+|+-+.+|+.++.++....+.-|+|+||+|+.+.+++.....+.+......-|+++|+++.+|++.+|..+.
T Consensus        86 vydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a  165 (213)
T KOG0095|consen   86 VYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLA  165 (213)
T ss_pred             EEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHH
Confidence            99999999999999999999999988899999999999988889988889999998888999999999999999999988


Q ss_pred             HHc
Q 028466          168 AAL  170 (208)
Q Consensus       168 ~~~  170 (208)
                      ..+
T Consensus       166 ~rl  168 (213)
T KOG0095|consen  166 CRL  168 (213)
T ss_pred             HHH
Confidence            665

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=2.1e-32  Score=194.32  Aligned_cols=160  Identities=85%  Similarity=1.238  Sum_probs=146.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+++|.+|||||||++++++..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|++|+||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999998888888888888888888887789999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA  169 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (208)
                      |+++++++..+..|+..+......+.|+++++||.|+....+....+....+...++.++++|++++.|+++++++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999999877665579999999999996666677788888888889999999999999999999999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=2.8e-32  Score=194.20  Aligned_cols=162  Identities=47%  Similarity=0.811  Sum_probs=147.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+......+++.+|++|+||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999888787888888888888888888789999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA  169 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (208)
                      |++++++++.+..|+..+......+.|+++|+||+|+....+...+.++.+++.+++.++++|+.++.|+++++++|.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999887766689999999999987666677788888888889999999999999999999999988


Q ss_pred             cC
Q 028466          170 LP  171 (208)
Q Consensus       170 ~~  171 (208)
                      +.
T Consensus       161 ~~  162 (164)
T smart00175      161 IL  162 (164)
T ss_pred             Hh
Confidence            74

Rab GTPases are implicated in vesicle trafficking.

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=2.2e-32  Score=196.86  Aligned_cols=159  Identities=33%  Similarity=0.521  Sum_probs=138.4

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      .+||+++|.+|||||||+.++..+.+...+.++.+..+. ..+..++..+.+.+|||+|++.+...+..+++++|++|+|
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            379999999999999999999999998888888876553 4566778888999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcC-CeEEEeecC
Q 028466           89 YDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELN-VMFIETSAK  154 (208)
Q Consensus        89 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S~~  154 (208)
                      ||++++++++.+. .|+..+.... .+.|++||+||.|+.+.            +.+...++++++++.+ ..|+++||+
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~  158 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL  158 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence            9999999999986 5888776543 57899999999998543            4566778888888887 689999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 028466          155 AGFNIKALFRKIAAA  169 (208)
Q Consensus       155 ~~~~v~~~~~~l~~~  169 (208)
                      +|.|++++|+.++..
T Consensus       159 tg~~v~~~f~~~~~~  173 (175)
T cd01874         159 TQKGLKNVFDEAILA  173 (175)
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999999999999874

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=5.8e-32  Score=193.86  Aligned_cols=164  Identities=39%  Similarity=0.627  Sum_probs=145.3

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      .+..+||+++|.+|||||||+++++++.+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            35679999999999999999999999999887788888777777888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcC----CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCCHH
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTERG----SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFNIK  160 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~  160 (208)
                      |+|||++++++++.+..|+..+.....    .+.|+++|+||.|+. .......++++++++++. .++++||+++.|+.
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  160 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA  160 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence            999999999999999999988766442    468999999999985 456667888899888884 89999999999999


Q ss_pred             HHHHHHHHHc
Q 028466          161 ALFRKIAAAL  170 (208)
Q Consensus       161 ~~~~~l~~~~  170 (208)
                      ++|+++.+.+
T Consensus       161 ~~~~~~~~~~  170 (170)
T cd04116         161 AAFEEAVRRV  170 (170)
T ss_pred             HHHHHHHhhC
Confidence            9999998653

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=8e-34  Score=191.25  Aligned_cols=168  Identities=40%  Similarity=0.685  Sum_probs=156.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      ...+|++++|..-||||||+=+++.++|......+..-.+..+.+++.+....+.||||+|+++|..+-+.|++.+++++
T Consensus        11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal   90 (218)
T KOG0088|consen   11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL   90 (218)
T ss_pred             ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence            35799999999999999999999999998877777777778888888888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      +|||++|.++|+.++.|...++...+..+-+++|+||+|+.+++.+...+++..+...|+.|+++||+++.|+.++|+.|
T Consensus        91 LVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~L  170 (218)
T KOG0088|consen   91 LVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESL  170 (218)
T ss_pred             EEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHH
Confidence            99999999999999999999999988888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCc
Q 028466          167 AAALPGME  174 (208)
Q Consensus       167 ~~~~~~~~  174 (208)
                      ...+.+..
T Consensus       171 t~~MiE~~  178 (218)
T KOG0088|consen  171 TAKMIEHS  178 (218)
T ss_pred             HHHHHHHh
Confidence            87765543

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=7e-32  Score=192.04  Aligned_cols=162  Identities=49%  Similarity=0.842  Sum_probs=147.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      ++||+++|++|+|||||++++.++.+...+.++.+..+....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            48999999999999999999999998877778888777778888888888999999999999999888899999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466           89 YDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA  168 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (208)
                      +|+++++++.....|+..+........|+++++||.|+.+.......+...++...++.++++|++++.|+++++++|.+
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999988776677999999999999766667777888888888999999999999999999999998


Q ss_pred             Hc
Q 028466          169 AL  170 (208)
Q Consensus       169 ~~  170 (208)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            76

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=3.9e-32  Score=193.46  Aligned_cols=161  Identities=35%  Similarity=0.586  Sum_probs=141.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      ++||+++|.+|+|||||++++..+.+...+.++.+ +.....+..++..+.+.||||||++.|..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            48999999999999999999999999877777664 45556677788778899999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           89 YDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      ||++++++++.+..|+..+..... .+.|+++|+||.|+.........+...++...+++++++||+++.|++++|.++.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999988876543 5799999999999976666666677888888888999999999999999999998


Q ss_pred             HHc
Q 028466          168 AAL  170 (208)
Q Consensus       168 ~~~  170 (208)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            765

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-32  Score=180.87  Aligned_cols=206  Identities=32%  Similarity=0.587  Sum_probs=172.7

Q ss_pred             CCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccC
Q 028466            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   82 (208)
Q Consensus         3 ~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   82 (208)
                      |-+...-+|.+++|.-|+|||+|+.++...+|-..-..++++++....+...+..+++.||||+|+++|+...+.|++.+
T Consensus         5 pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrga   84 (215)
T KOG0097|consen    5 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA   84 (215)
T ss_pred             ccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence            45556789999999999999999999999999888888999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHH
Q 028466           83 SVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL  162 (208)
Q Consensus        83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~  162 (208)
                      .+.+.|||++.+.++..+-.|+...+....++..+++++||.|+...+.+..+++++++.+.++.|+++|+++|+++++.
T Consensus        85 agalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nveda  164 (215)
T KOG0097|consen   85 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDA  164 (215)
T ss_pred             cceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence            99999999999999999999999999998889999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHcC-CCccCCcccccccccccccCCCCC----CCCCCCCCCCCcC
Q 028466          163 FRKIAAALP-GMETLSSTKQEDLVDVNLKSSNTN----TSQSQPQSGGCAC  208 (208)
Q Consensus       163 ~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~c~~  208 (208)
                      |-.-.+.++ ..+..+-.-...-...--+++...    ++....++.+|.|
T Consensus       165 fle~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l~se~~~~kd~c~c  215 (215)
T KOG0097|consen  165 FLETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSLSSEATGAKDQCSC  215 (215)
T ss_pred             HHHHHHHHHHhhhcCcccccchhccCcCCCCCCCccccccCCCCccccCCC
Confidence            766555543 333333322222222222222211    3455567778988

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=7e-32  Score=193.47  Aligned_cols=163  Identities=38%  Similarity=0.647  Sum_probs=146.3

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc-cchhhhhccCCEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSSVAV   86 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i   86 (208)
                      +.+||+++|++|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|++|
T Consensus         1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i   80 (170)
T cd04115           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (170)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence            35899999999999999999999999888888888888888888888888999999999999886 46788899999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCC---CCCHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKA---GFNIKAL  162 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~---~~~v~~~  162 (208)
                      +|||+++++++..+..|+..+.... ..+.|+++|+||.|+....++...+...++...++.|+++||++   +.+++++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~  160 (170)
T cd04115          81 FVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI  160 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence            9999999999999999998887654 35799999999999987777778888889988889999999999   8899999


Q ss_pred             HHHHHHHc
Q 028466          163 FRKIAAAL  170 (208)
Q Consensus       163 ~~~l~~~~  170 (208)
                      |..+.+.+
T Consensus       161 f~~l~~~~  168 (170)
T cd04115         161 FMTLAHKL  168 (170)
T ss_pred             HHHHHHHh
Confidence            99998766

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=5.4e-32  Score=193.15  Aligned_cols=159  Identities=34%  Similarity=0.524  Sum_probs=137.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+++|.+|||||||+++++++.+...+.++.+..+ ...+..+...+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999998777777765433 444556677789999999999999998888999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcC---CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTERG---SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      |++++++++.+..|+..+.....   .+.|+++|+||.|+.+.+++...+...++..+++.++++||++|.|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            99999999999999887776542   568999999999997666677777788888888999999999999999999999


Q ss_pred             HHH
Q 028466          167 AAA  169 (208)
Q Consensus       167 ~~~  169 (208)
                      ..+
T Consensus       161 ~~~  163 (165)
T cd04140         161 LNL  163 (165)
T ss_pred             Hhc
Confidence            865

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=5e-32  Score=193.03  Aligned_cols=161  Identities=38%  Similarity=0.596  Sum_probs=140.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+|+|++|||||||++++.++.+...+.++.+ +........++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999988777767665 333455667777889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA  168 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (208)
                      |++++++++.+..|+..+..... .+.|+++|+||.|+.+.......++..++..++++++++||+++.|++++|++|.+
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            99999999999999888766543 46899999999999776666777888888888999999999999999999999998


Q ss_pred             HcC
Q 028466          169 ALP  171 (208)
Q Consensus       169 ~~~  171 (208)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            763

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=1.1e-31  Score=191.24  Aligned_cols=161  Identities=34%  Similarity=0.570  Sum_probs=140.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      .+||+++|.+|+|||||+++++++.+...+.++.+..+ .....+++..+.+.+|||||++++..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            58999999999999999999999888776666665333 44456777778999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           89 YDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      ||++++++++.+..|+..+.... ..+.|+++|+||+|+.........+..+++..++++++++||+++.|++++|++|.
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999998887653 35789999999999976666667778888888889999999999999999999998


Q ss_pred             HHc
Q 028466          168 AAL  170 (208)
Q Consensus       168 ~~~  170 (208)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            765

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=1e-31  Score=190.82  Aligned_cols=160  Identities=32%  Similarity=0.562  Sum_probs=138.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      ++||+++|.+|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            47999999999999999999999998777777766433 45566777778899999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           89 YDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      ||+++..+++.+..|+..+..... .+.|+++|+||.|+.+ ......+...++..++++++++||+++.|++++|++|.
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999988876643 5789999999999865 45556777888888899999999999999999999998


Q ss_pred             HHc
Q 028466          168 AAL  170 (208)
Q Consensus       168 ~~~  170 (208)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04138         159 REI  161 (162)
T ss_pred             HHh
Confidence            764

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=9.6e-32  Score=193.33  Aligned_cols=158  Identities=34%  Similarity=0.549  Sum_probs=137.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+++|.+|||||||+.+++.+.+...+.++.. +.....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            7999999999999999999999999888888875 344455667888889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcCC-eEEEeecCC
Q 028466           90 DVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELNV-MFIETSAKA  155 (208)
Q Consensus        90 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~~  155 (208)
                      |++++++|+.+. .|+..+.... .+.|++||+||.|+.+.            ..+...++..++.+++. .++++||++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  159 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999985 6887776543 57999999999999542            24677888899999984 999999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028466          156 GFNIKALFRKIAAA  169 (208)
Q Consensus       156 ~~~v~~~~~~l~~~  169 (208)
                      |.|++++|+.+.+.
T Consensus       160 ~~~i~~~f~~l~~~  173 (174)
T cd01871         160 QKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=1.2e-31  Score=195.28  Aligned_cols=160  Identities=34%  Similarity=0.559  Sum_probs=137.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      .||+|+|.+|||||||+++|.++.+...+.++.+..+. ..+..++..+.+.||||+|++.+..++..+++++|++|+||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            38999999999999999999999998888888765543 44556777789999999999999999988999999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCcc------------CcCHHHHHHHHHHcC-CeEEEeecCC
Q 028466           90 DVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKR------------QVSIEEGEAKARELN-VMFIETSAKA  155 (208)
Q Consensus        90 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~S~~~  155 (208)
                      |++++++|+.+. .|+..+.... .+.|+++|+||.|+.+..            .+...+...++...+ +.|+++||++
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999875 5888887654 579999999999996543            234566777887777 6899999999


Q ss_pred             CCCHHHHHHHHHHHcC
Q 028466          156 GFNIKALFRKIAAALP  171 (208)
Q Consensus       156 ~~~v~~~~~~l~~~~~  171 (208)
                      +.|++++|.+|.+.+.
T Consensus       159 ~~~v~e~f~~l~~~~~  174 (189)
T cd04134         159 NRGVNEAFTEAARVAL  174 (189)
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999999885

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=1.7e-31  Score=189.89  Aligned_cols=159  Identities=30%  Similarity=0.546  Sum_probs=137.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+++|.+|||||||+++++.+.+.+.+.++.+.+........++..+.+.+|||+|++.|..++..+++++|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999988777777776666667777888889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA  169 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (208)
                      |++++.+++.+..|+..+.... .+.|+++|+||.|+...   ...+...++...+++++++||+++.|++++|+.+.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999999887543 46899999999998432   1334556666778899999999999999999999987


Q ss_pred             cCC
Q 028466          170 LPG  172 (208)
Q Consensus       170 ~~~  172 (208)
                      +.+
T Consensus       157 ~~~  159 (161)
T cd04124         157 AVS  159 (161)
T ss_pred             HHh
Confidence            754

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.1e-34  Score=191.93  Aligned_cols=170  Identities=37%  Similarity=0.581  Sum_probs=154.6

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC---------CeEEEEEEEecCCchhhccchhh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE---------DRTVRLQLWDTAGQERFRSLIPS   77 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~~~~~   77 (208)
                      ..-+|.+.+|.+|||||+|+.++..+.|......++++++..+.+.++         +..+.+.+|||+|+++|++++..
T Consensus         7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA   86 (219)
T KOG0081|consen    7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA   86 (219)
T ss_pred             HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence            455788999999999999999999999999999999999999888764         24578899999999999999999


Q ss_pred             hhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCC
Q 028466           78 YIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAG  156 (208)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  156 (208)
                      +++++.+++++||+++..+|..+..|+.++..+.- +++.+++++||.|+.+.+.+..+++.+++++++++|+++||.+|
T Consensus        87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg  166 (219)
T KOG0081|consen   87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTG  166 (219)
T ss_pred             HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence            99999999999999999999999999999987664 67779999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHcCCCccC
Q 028466          157 FNIKALFRKIAAALPGMETL  176 (208)
Q Consensus       157 ~~v~~~~~~l~~~~~~~~~~  176 (208)
                      .||++..+.|...+++.-+.
T Consensus       167 ~Nv~kave~LldlvM~Rie~  186 (219)
T KOG0081|consen  167 TNVEKAVELLLDLVMKRIEQ  186 (219)
T ss_pred             cCHHHHHHHHHHHHHHHHHH
Confidence            99999999998887655433

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=2.2e-31  Score=194.86  Aligned_cols=163  Identities=25%  Similarity=0.375  Sum_probs=136.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc--------chhhhhcc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIRD   81 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~   81 (208)
                      +||+|+|.+|||||||+++|+++.+...+.++.+.+.....+.+++..+.+.+|||||...+..        ....++++
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999999888888887666666677888888999999999765422        13345789


Q ss_pred             CCEEEEEEeCCChhhHHhHHHHHHHHHhhc---CCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-HcCCeEEEeecCCCC
Q 028466           82 SSVAVIVYDVASRQSFLNTTKWVEEVRTER---GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-ELNVMFIETSAKAGF  157 (208)
Q Consensus        82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~  157 (208)
                      +|++|+|||++++++++.+..|+..+....   ..++|+++|+||+|+...+.....+...++. ..+++|+++||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999998887654   3679999999999997665556666666654 557899999999999


Q ss_pred             CHHHHHHHHHHHcCC
Q 028466          158 NIKALFRKIAAALPG  172 (208)
Q Consensus       158 ~v~~~~~~l~~~~~~  172 (208)
                      |++++|+.+.+.+..
T Consensus       161 ~v~~lf~~i~~~~~~  175 (198)
T cd04142         161 HILLLFKELLISATT  175 (198)
T ss_pred             CHHHHHHHHHHHhhc
Confidence            999999999988763

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=5.4e-31  Score=187.04  Aligned_cols=161  Identities=40%  Similarity=0.716  Sum_probs=142.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+++|.+|+|||||+++|+++.+...+.++.+.......+...+..+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999999887766667666666666777777778999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA  169 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (208)
                      |++++++++.+..|+..+......+.|+++|+||.|+....+....++.+.+...+..++++|++++.|+++++++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999998887766679999999999997666777778888888889999999999999999999999876


Q ss_pred             c
Q 028466          170 L  170 (208)
Q Consensus       170 ~  170 (208)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            4

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=5.2e-31  Score=187.79  Aligned_cols=160  Identities=37%  Similarity=0.608  Sum_probs=139.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC--CCCCCccceeeeeeeEEEEEEC-CeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      +||+++|.+|||||||++++..+  .+...+.++.+.++.......+ +..+.+.+|||||++.+..++..+++++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  5777888888877766666564 46689999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      +|||+++++++..+..|+..+.... .+.|+++|+||.|+.+..+....+...+...++..++++|++++.|++++|+.|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999999887664 568999999999997766666666677777788899999999999999999999


Q ss_pred             HHHc
Q 028466          167 AAAL  170 (208)
Q Consensus       167 ~~~~  170 (208)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04101         160 ARAF  163 (164)
T ss_pred             HHHh
Confidence            8865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=8.4e-31  Score=197.45  Aligned_cols=161  Identities=29%  Similarity=0.482  Sum_probs=140.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+++|.+|||||||+++|+++.+...+.++.+ ++....+.+++..+.+.||||+|++.|..+...++.++|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999999877777775 556667788888899999999999999888888899999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhh---------cCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-cCCeEEEeecCCCCCH
Q 028466           90 DVASRQSFLNTTKWVEEVRTE---------RGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-LNVMFIETSAKAGFNI  159 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~---------~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~v  159 (208)
                      |++++++|+.+..|+..+...         ...+.|+++|+||+|+...+++...++.+++.. .++.++++||+++.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999998888654         224789999999999976566777788777764 3678999999999999


Q ss_pred             HHHHHHHHHHcC
Q 028466          160 KALFRKIAAALP  171 (208)
Q Consensus       160 ~~~~~~l~~~~~  171 (208)
                      +++|++|.....
T Consensus       160 ~elf~~L~~~~~  171 (247)
T cd04143         160 DEMFRALFSLAK  171 (247)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998764

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=4.8e-31  Score=192.89  Aligned_cols=156  Identities=31%  Similarity=0.573  Sum_probs=138.7

Q ss_pred             EcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCCh
Q 028466           15 LGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASR   94 (208)
Q Consensus        15 vG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   94 (208)
                      +|..|||||||+++++.+.+...+.++.+.++....+.+++..+.+.||||+|++.|..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999999888889998888888888888889999999999999999999999999999999999999


Q ss_pred             hhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHHcCCC
Q 028466           95 QSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGM  173 (208)
Q Consensus        95 ~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~~~~  173 (208)
                      .+++.+..|+..+.... .+.|+++|+||+|+.. +...... ..++...++.|+++||+++.|++++|++|.+.+...
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999998764 5799999999999853 3343333 467777889999999999999999999999888554

Ran is involved in the active transport of proteins through nuclear pores.

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=1.7e-30  Score=184.63  Aligned_cols=160  Identities=43%  Similarity=0.745  Sum_probs=141.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+......+++++|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999887777788887777777777777789999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA  168 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (208)
                      |++++++++.+..|+..+..... .+.|+++|+||.|+. .......+...++...++.++++|+++|.|++++++.+.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            99999999999999988877653 678999999999996 3455567788888888999999999999999999999987


Q ss_pred             Hc
Q 028466          169 AL  170 (208)
Q Consensus       169 ~~  170 (208)
                      .+
T Consensus       160 ~~  161 (161)
T cd01863         160 KI  161 (161)
T ss_pred             hC
Confidence            53

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=1.7e-30  Score=186.37  Aligned_cols=164  Identities=40%  Similarity=0.679  Sum_probs=143.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+++|++|||||||++++.+..+...+.++.+.++....+...+..+.+.+||+||++.+..++..+++++|++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999888777788887787777888888889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcC----CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC-CeEEEeecCCCCCHHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTERG----SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALFR  164 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~~~  164 (208)
                      |++++++++....|...+.....    .+.|+++|+||+|+.........+.+.+....+ ..++++|++++.|++++++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999988888887665543    368999999999997555566777788888887 7999999999999999999


Q ss_pred             HHHHHcCCC
Q 028466          165 KIAAALPGM  173 (208)
Q Consensus       165 ~l~~~~~~~  173 (208)
                      +|.+.+.+.
T Consensus       161 ~i~~~~~~~  169 (172)
T cd01862         161 TIARKALEQ  169 (172)
T ss_pred             HHHHHHHhc
Confidence            999877544

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=3.3e-30  Score=184.53  Aligned_cols=163  Identities=39%  Similarity=0.692  Sum_probs=144.0

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      ..++|+++|++|+|||||++++..+.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   85 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL   85 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            45999999999999999999999888877777888878878788888888889999999999999998999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      |||++++.+++.+..|+..+......+.|+++|+||.|+....++.....+.+.+.....++++|++++.|++++|++|.
T Consensus        86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  165 (169)
T cd04114          86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA  165 (169)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999888776666799999999999976666666666777777778999999999999999999998


Q ss_pred             HHc
Q 028466          168 AAL  170 (208)
Q Consensus       168 ~~~  170 (208)
                      +.+
T Consensus       166 ~~~  168 (169)
T cd04114         166 CRL  168 (169)
T ss_pred             HHh
Confidence            764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd00154 Rab Rab family

Probab=99.98  E-value=2.1e-30  Score=183.04  Aligned_cols=159  Identities=51%  Similarity=0.877  Sum_probs=144.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+++|++|+|||||++++.++.+...+.++.+.++....+..++....+.+||+||+..+...+..+++++|++|+|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998887888888888888888888889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA  168 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (208)
                      |++++++++.+..|+..+........|+++++||+|+.........+.+.++...+.+++++|++++.|+++++++|.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  159 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE  159 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence            9999999999999999988876567999999999999755666788888899888999999999999999999999863

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04177 RSR1 RSR1 subgroup

Probab=99.98  E-value=2.1e-30  Score=185.47  Aligned_cols=161  Identities=34%  Similarity=0.538  Sum_probs=140.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      ++||+++|.+|+|||||++++.++.+...+.++.+.. ....+.+++..+.+.+|||||++.|..++..+++.++++++|
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv   79 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV   79 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence            4799999999999999999999999877777776633 356667788888999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHH
Q 028466           89 YDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      ||++++++++.+..|+..+.... ..+.|+++++||.|+.+.+....++...+++.++ ++++++||+++.|++++|+++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i  159 (168)
T cd04177          80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL  159 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999988887644 3579999999999997766677777788888887 799999999999999999999


Q ss_pred             HHHc
Q 028466          167 AAAL  170 (208)
Q Consensus       167 ~~~~  170 (208)
                      ...+
T Consensus       160 ~~~~  163 (168)
T cd04177         160 VRQI  163 (168)
T ss_pred             HHHH
Confidence            8754

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.98  E-value=1.3e-30  Score=190.18  Aligned_cols=158  Identities=31%  Similarity=0.397  Sum_probs=128.5

Q ss_pred             ceeEEEEcCCCCcHHHHHH-HhhcCC-----CCCCccceeee-eeeEEE--------EEECCeEEEEEEEecCCchhhcc
Q 028466            9 KYKLVFLGDQSVGKTSIIT-RFMYDK-----FDNTYQATIGI-DFLSKT--------MYLEDRTVRLQLWDTAGQERFRS   73 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~   73 (208)
                      .+||+++|..|||||||+. ++.++.     +...+.|+.+. +.....        ..+++..+.+.+|||+|++..  
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence            4899999999999999996 555443     34556677642 322221        246788899999999999753  


Q ss_pred             chhhhhccCCEEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcC-------------------ccCcC
Q 028466           74 LIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD-------------------KRQVS  133 (208)
Q Consensus        74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~-------------------~~~~~  133 (208)
                      ....+++++|++|+|||++++++++.+. .|+..+.... .+.|+++|+||.|+.+                   .+.+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4456789999999999999999999986 5888887654 4789999999999853                   35678


Q ss_pred             HHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466          134 IEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA  169 (208)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (208)
                      ..+++++++++++.|+++||+++.||+++|+.+.+.
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            889999999999999999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01892 Miro2 Miro2 subfamily

Probab=99.98  E-value=8.2e-31  Score=187.68  Aligned_cols=162  Identities=23%  Similarity=0.291  Sum_probs=138.6

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      +.+||+++|.+|||||||+++|+++.+. ..+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|+++
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l   82 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC   82 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence            5799999999999999999999999998 788888887777777778888788999999999999988999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~  165 (208)
                      +|||++++++++.+..|+..+...  .+.|+++|+||.|+.+.......+...++..++. .++++||+++.|++++|+.
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~  160 (169)
T cd01892          83 LVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK  160 (169)
T ss_pred             EEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence            999999999999888888765332  3689999999999965544333445666777776 4799999999999999999


Q ss_pred             HHHHcC
Q 028466          166 IAAALP  171 (208)
Q Consensus       166 l~~~~~  171 (208)
                      |.+.+.
T Consensus       161 l~~~~~  166 (169)
T cd01892         161 LATAAQ  166 (169)
T ss_pred             HHHHhh
Confidence            998864

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04148 RGK RGK subfamily

Probab=99.98  E-value=1.8e-30  Score=193.27  Aligned_cols=164  Identities=32%  Similarity=0.483  Sum_probs=138.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhc-cCCEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR-DSSVAVI   87 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~i~   87 (208)
                      +||+++|.+|||||||+++|..+.+. ..+.++.+.++....+.+++..+.+.+|||+|++.+  ....++. ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence            58999999999999999999988886 566666655667777788888889999999999822  3344566 9999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      |||++++++++.+..|+..+..... .+.|+++|+||.|+.+..++...+.++++..+++.++++||+++.|++++|++|
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999988876542 579999999999997777777777888888889999999999999999999999


Q ss_pred             HHHcCCCcc
Q 028466          167 AAALPGMET  175 (208)
Q Consensus       167 ~~~~~~~~~  175 (208)
                      .+.+.....
T Consensus       159 ~~~~~~~~~  167 (221)
T cd04148         159 VRQIRLRRD  167 (221)
T ss_pred             HHHHHhhhc
Confidence            998854333

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.98  E-value=2.1e-30  Score=186.46  Aligned_cols=158  Identities=34%  Similarity=0.563  Sum_probs=136.1

Q ss_pred             EEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeC
Q 028466           12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDV   91 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   91 (208)
                      |+|+|.+|||||||+++|.++.+...+.++....+ ...+.+++..+.+.+|||||++.+..++..+++++|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            58999999999999999999999887777765443 44566788888999999999999999999999999999999999


Q ss_pred             CChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCcc------------CcCHHHHHHHHHHcCC-eEEEeecCCCC
Q 028466           92 ASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKR------------QVSIEEGEAKARELNV-MFIETSAKAGF  157 (208)
Q Consensus        92 ~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S~~~~~  157 (208)
                      +++++++.+. .|+..+.... .+.|+++|+||.|+.+..            .+...++.+++...+. .++++||+++.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999985 5888877654 579999999999986432            2667778889999986 99999999999


Q ss_pred             CHHHHHHHHHHHcC
Q 028466          158 NIKALFRKIAAALP  171 (208)
Q Consensus       158 ~v~~~~~~l~~~~~  171 (208)
                      |++++|+.+.+.+.
T Consensus       159 ~v~~lf~~l~~~~~  172 (174)
T smart00174      159 GVREVFEEAIRAAL  172 (174)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.98  E-value=1.3e-30  Score=185.96  Aligned_cols=160  Identities=31%  Similarity=0.536  Sum_probs=135.5

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh-hccchhhhhccCCEEEEEE
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~v~   89 (208)
                      ||+++|++|+|||||+++++.+.+...+.++....+ ...+.+++..+.+.+||+||++. +......+++.+|++|+||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            689999999999999999999888766666654333 45566778788899999999985 3456777899999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhc--CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCC-CCHHHHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTER--GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAG-FNIKALFRKI  166 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~-~~v~~~~~~l  166 (208)
                      |++++++++.+..|+..+....  ..+.|+++|+||+|+.....+...++..++..++..|+++|++++ .|++++|..|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999988887654  357999999999999766677778888899999999999999999 5999999999


Q ss_pred             HHHcC
Q 028466          167 AAALP  171 (208)
Q Consensus       167 ~~~~~  171 (208)
                      .+.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            98763

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.98  E-value=2.5e-30  Score=183.01  Aligned_cols=153  Identities=18%  Similarity=0.386  Sum_probs=129.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+++|+.|||||||+.+++.+.+...+.++.+ .+ ...+.+++..+.+.+||++|++.     ..+++++|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            5899999999999999999999988766544432 33 46677888888899999999975     34678899999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCc--CccCcCHHHHHHHHHHc-CCeEEEeecCCCCCHHHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLV--DKRQVSIEEGEAKAREL-NVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      |++++++|+.+..|+..+..... .+.|+++|+||.|+.  ..+++...++++++++. ++.|+++||+++.|++++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999887654 568999999999985  34667778888888876 489999999999999999999


Q ss_pred             HHHH
Q 028466          166 IAAA  169 (208)
Q Consensus       166 l~~~  169 (208)
                      +.+.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            9864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04135 Tc10 TC10 subfamily

Probab=99.97  E-value=7.3e-30  Score=183.59  Aligned_cols=159  Identities=31%  Similarity=0.528  Sum_probs=135.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+++|++|+|||||+++|..+.+...+.++.. +.....+.+++..+.+.+|||+|++.+...+..+++.+|++|+||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999998777766664 334446677888888999999999999999999999999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcCC-eEEEeecCC
Q 028466           90 DVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELNV-MFIETSAKA  155 (208)
Q Consensus        90 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~~  155 (208)
                      |++++++++.+. .|+..+... ..+.|+++|+||+|+.+.            ..+...++..+++.++. .++++||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999875 577777655 567999999999998543            24556788888888885 799999999


Q ss_pred             CCCHHHHHHHHHHHc
Q 028466          156 GFNIKALFRKIAAAL  170 (208)
Q Consensus       156 ~~~v~~~~~~l~~~~  170 (208)
                      +.|++++|+.+.+.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998765

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.97  E-value=7.6e-30  Score=183.41  Aligned_cols=157  Identities=34%  Similarity=0.562  Sum_probs=135.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +|++++|.+|+|||||+.++.++.+...+.++. .+.....+.+++..+.+.+|||||++.+..++..+++++|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999998888777765 3455556777887889999999999999999988999999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcC------------ccCcCHHHHHHHHHHcCC-eEEEeecCC
Q 028466           90 DVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD------------KRQVSIEEGEAKARELNV-MFIETSAKA  155 (208)
Q Consensus        90 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S~~~  155 (208)
                      |++++++++.+. .|+..+.... .+.|+++|+||.|+.+            .+.+...++..+++..+. .++++||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999874 6887776533 4689999999999853            345677788899999887 999999999


Q ss_pred             CCCHHHHHHHHHH
Q 028466          156 GFNIKALFRKIAA  168 (208)
Q Consensus       156 ~~~v~~~~~~l~~  168 (208)
                      +.|++++|+.+.-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998763

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=4.8e-32  Score=177.78  Aligned_cols=173  Identities=39%  Similarity=0.667  Sum_probs=158.6

Q ss_pred             EEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCC
Q 028466           14 FLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA   92 (208)
Q Consensus        14 vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   92 (208)
                      ++|.+++|||+|+-++..+.|. ....+++++++..+.+..++..+++.+|||+|+++|++....|++++|+++++||+.
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            6899999999999999888775 466789999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466           93 SRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPG  172 (208)
Q Consensus        93 ~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~~~  172 (208)
                      +..+|+..+.|+.++..+....+.+.+++||+|+..++.+..++.+.++..++++|+++|+++|.|++..|-.|.+.+..
T Consensus        82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k  161 (192)
T KOG0083|consen   82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK  161 (192)
T ss_pred             cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence            99999999999999999888888999999999998888888999999999999999999999999999999999999887


Q ss_pred             CccCCccccccccc
Q 028466          173 METLSSTKQEDLVD  186 (208)
Q Consensus       173 ~~~~~~~~~~~~~~  186 (208)
                      .....+...+-..+
T Consensus       162 ~~~~~~~~~~~~~~  175 (192)
T KOG0083|consen  162 LKMGAPPEGEFADH  175 (192)
T ss_pred             hccCCCCCCccccc
Confidence            77776665554333

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=2.7e-29  Score=178.74  Aligned_cols=161  Identities=35%  Similarity=0.571  Sum_probs=139.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+++|.+|+|||||+++++...+...+.++... ........++..+.+.+||+||+..+......+++.+|++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            58999999999999999999998887776666553 33455667888889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA  168 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (208)
                      |++++.++.....|+..+..... .+.|+++|+||+|+....+....+.......++++++++|++++.|++++|++|.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999999999888887643 57999999999999765556677778888888899999999999999999999998


Q ss_pred             HcC
Q 028466          169 ALP  171 (208)
Q Consensus       169 ~~~  171 (208)
                      .+.
T Consensus       160 ~~~  162 (164)
T cd04139         160 EIR  162 (164)
T ss_pred             HHH
Confidence            763

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd00876 Ras Ras family

Probab=99.97  E-value=3.1e-29  Score=177.66  Aligned_cols=159  Identities=40%  Similarity=0.619  Sum_probs=140.0

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (208)
                      ||+++|++|+|||||++++++..+...+.++.. +.....+..++..+.+.+||+||+..+......+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998887777666665 5555666677777899999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466           91 VASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA  169 (208)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (208)
                      +++++++..+..|+..+..... ...|+++|+||+|+.........++..++..++++++++|++++.|+++++++|.+.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999999988887665 579999999999997766677788888888888999999999999999999999875


Q ss_pred             c
Q 028466          170 L  170 (208)
Q Consensus       170 ~  170 (208)
                      +
T Consensus       160 i  160 (160)
T cd00876         160 I  160 (160)
T ss_pred             C
Confidence            3

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=2.8e-29  Score=184.21  Aligned_cols=162  Identities=31%  Similarity=0.505  Sum_probs=134.5

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (208)
                      ||+++|.+|||||||+++|+++.+...+.++.. +.....+.+.+..+.+.+||+||+..+..++..++..+|++|+|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999988776666654 4455567777777899999999999999888889999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcC-ccCcCHHHHHHHHH-HcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           91 VASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVD-KRQVSIEEGEAKAR-ELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      ++++++++.+..|+..+..... .+.|+++|+||.|+.. ..........+... ..+..++++|+++|.|++++|++|.
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988877654 5799999999999865 34444444444433 4567899999999999999999999


Q ss_pred             HHcCCC
Q 028466          168 AALPGM  173 (208)
Q Consensus       168 ~~~~~~  173 (208)
                      +.+...
T Consensus       160 ~~~~~~  165 (198)
T cd04147         160 RQANLP  165 (198)
T ss_pred             HHhhcc
Confidence            987543

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=1.3e-29  Score=183.95  Aligned_cols=164  Identities=38%  Similarity=0.607  Sum_probs=152.8

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      +.+||+++|.+|||||+|..++.++.|.+.|.|+++ +.+.+.+.+++..+.+.|+||+|++.|..+...+++++|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            569999999999999999999999999999999998 6677778888999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      ||++++..||+.+..++..+..... ...|+++|+||+|+...+++..++.+.++..+++.|+++||+.+.+++++|..|
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            9999999999999999999955444 567999999999998889999999999999999999999999999999999999


Q ss_pred             HHHcCC
Q 028466          167 AAALPG  172 (208)
Q Consensus       167 ~~~~~~  172 (208)
                      .+.+..
T Consensus       161 ~r~~~~  166 (196)
T KOG0395|consen  161 VREIRL  166 (196)
T ss_pred             HHHHHh
Confidence            998854

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=7.2e-29  Score=179.39  Aligned_cols=162  Identities=35%  Similarity=0.502  Sum_probs=138.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      .||+|+|.+|+|||||++++.+..+...+.++....+ ...+..++..+.+.+||+||++.+...+..++..+|++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            6899999999999999999999888776666654333 455567777788999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA  168 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (208)
                      |+++.++++.+..|+..+..... .+.|+++|+||+|+.........+...++..++..++++|++++.|+.+++.+|.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999998888876543 56899999999999765566666677777888889999999999999999999999


Q ss_pred             HcCC
Q 028466          169 ALPG  172 (208)
Q Consensus       169 ~~~~  172 (208)
                      .+..
T Consensus       161 ~~~~  164 (180)
T cd04137         161 EIEK  164 (180)
T ss_pred             HHHH
Confidence            8843

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=1.6e-28  Score=182.40  Aligned_cols=172  Identities=31%  Similarity=0.571  Sum_probs=149.2

Q ss_pred             CCCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhc
Q 028466            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (208)
Q Consensus         1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   80 (208)
                      |+.+..+..+||+++|++|||||||+++++.+.+...+.++.+.++....+..+++.+.+.+|||+|++.+...+..++.
T Consensus         1 ~~~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~   80 (215)
T PTZ00132          1 MQQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYI   80 (215)
T ss_pred             CccccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhc
Confidence            56677888999999999999999999999988888888899998888888888888899999999999999988889999


Q ss_pred             cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466           81 DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK  160 (208)
Q Consensus        81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (208)
                      +++++|+|||+++..++..+..|+..+.... .+.|+++++||.|+.+. +... +...++...++.++++|++++.|++
T Consensus        81 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~  157 (215)
T PTZ00132         81 KGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKA-RQITFHRKKNLQYYDISAKSNYNFE  157 (215)
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCH-HHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            9999999999999999999999998887654 57899999999998542 3322 3345667778899999999999999


Q ss_pred             HHHHHHHHHcCCCcc
Q 028466          161 ALFRKIAAALPGMET  175 (208)
Q Consensus       161 ~~~~~l~~~~~~~~~  175 (208)
                      +.|.+|.+.+...+.
T Consensus       158 ~~f~~ia~~l~~~p~  172 (215)
T PTZ00132        158 KPFLWLARRLTNDPN  172 (215)
T ss_pred             HHHHHHHHHHhhccc
Confidence            999999998865444

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=2.1e-29  Score=180.20  Aligned_cols=155  Identities=21%  Similarity=0.347  Sum_probs=123.3

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.+||+++|.+|+|||||+++|..+.+.. +.++.+.++.  .+..  ..+.+.+|||||++.+...+..+++++|++|
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii   81 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   81 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            467999999999999999999998877653 4566665543  2333  3478999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-----cCCeEEEeecCCCCCHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-----LNVMFIETSAKAGFNIK  160 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~v~  160 (208)
                      +|||++++.+++....|+..+.... ..+.|++||+||+|+.+.  ...+++..+...     ....++++||++|.|++
T Consensus        82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~  159 (168)
T cd04149          82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  159 (168)
T ss_pred             EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence            9999999999998888777765432 356899999999998542  345555555421     22468999999999999


Q ss_pred             HHHHHHHH
Q 028466          161 ALFRKIAA  168 (208)
Q Consensus       161 ~~~~~l~~  168 (208)
                      ++|++|.+
T Consensus       160 ~~~~~l~~  167 (168)
T cd04149         160 EGLTWLSS  167 (168)
T ss_pred             HHHHHHhc
Confidence            99999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=1.3e-28  Score=177.20  Aligned_cols=160  Identities=34%  Similarity=0.557  Sum_probs=132.9

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      +.||+|+|++|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..++.++|++++|
T Consensus         1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   79 (175)
T cd01870           1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   79 (175)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence            36899999999999999999999998877777776444 34566778888999999999999998888889999999999


Q ss_pred             EeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcCC-eEEEeecC
Q 028466           89 YDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELNV-MFIETSAK  154 (208)
Q Consensus        89 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~  154 (208)
                      ||++++++++.+. .|+..+.... .+.|+++|+||.|+.+.            ..+...+.++++...+. .++++||+
T Consensus        80 ~~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  158 (175)
T cd01870          80 FSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK  158 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence            9999999998874 5777776543 47899999999998542            22335667777777764 89999999


Q ss_pred             CCCCHHHHHHHHHHHc
Q 028466          155 AGFNIKALFRKIAAAL  170 (208)
Q Consensus       155 ~~~~v~~~~~~l~~~~  170 (208)
                      +|.|++++|++|.+.+
T Consensus       159 ~~~~v~~lf~~l~~~~  174 (175)
T cd01870         159 TKEGVREVFEMATRAA  174 (175)
T ss_pred             cCcCHHHHHHHHHHHh
Confidence            9999999999998754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=7.6e-29  Score=179.26  Aligned_cols=158  Identities=20%  Similarity=0.339  Sum_probs=123.5

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.+||+++|..|||||||++++..+.+. .+.++.+.++.  .+...  .+.+.+||+||++.+..++..+++++|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45789999999999999999999987775 35677665543  33443  378999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC-----CeEEEeecCCCCCHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN-----VMFIETSAKAGFNIK  160 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~  160 (208)
                      +|+|+++++++.....++..+.... ..+.|++||+||.|+...  ...+++...+.-..     ..++++||++|+|++
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            9999999999998887777765432 257899999999998543  23333333322111     245689999999999


Q ss_pred             HHHHHHHHHcC
Q 028466          161 ALFRKIAAALP  171 (208)
Q Consensus       161 ~~~~~l~~~~~  171 (208)
                      ++|++|.+.+.
T Consensus       168 e~~~~l~~~~~  178 (181)
T PLN00223        168 EGLDWLSNNIA  178 (181)
T ss_pred             HHHHHHHHHHh
Confidence            99999998774

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=2.6e-29  Score=182.12  Aligned_cols=163  Identities=25%  Similarity=0.366  Sum_probs=128.4

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEE-CCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      +.+||+++|.+|||||||++++..+.+... .++.+.+.....+.. ++..+.+.+|||||++.+...+..+++++|++|
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            458999999999999999999998887644 566665555544443 335678999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHH--Hc----CCeEEEeecCCCCCH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR--EL----NVMFIETSAKAGFNI  159 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~--~~----~~~~~~~S~~~~~~v  159 (208)
                      +|+|++++++++....|+..+.... ..+.|+++|+||.|+...  ....+...+..  ..    ++.++++||+++.|+
T Consensus        81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  158 (183)
T cd04152          81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGL  158 (183)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence            9999999989988888887776543 256899999999998542  33334444332  11    246899999999999


Q ss_pred             HHHHHHHHHHcCCC
Q 028466          160 KALFRKIAAALPGM  173 (208)
Q Consensus       160 ~~~~~~l~~~~~~~  173 (208)
                      ++++++|.+.+.+.
T Consensus       159 ~~l~~~l~~~l~~~  172 (183)
T cd04152         159 QEGLEKLYEMILKR  172 (183)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999888533

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=8.8e-30  Score=181.49  Aligned_cols=152  Identities=21%  Similarity=0.285  Sum_probs=124.6

Q ss_pred             EEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeC
Q 028466           12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDV   91 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   91 (208)
                      |+++|.+|||||||+++|.++.+...+.++.+.+.    ..++...+.+.+||++|++.+...+..+++++|++|+|||+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            79999999999999999999888777777776543    22334457899999999999999999999999999999999


Q ss_pred             CChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCH----HHHHHHHHHcCCeEEEeecCC------CCCHHH
Q 028466           92 ASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSI----EEGEAKARELNVMFIETSAKA------GFNIKA  161 (208)
Q Consensus        92 ~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~S~~~------~~~v~~  161 (208)
                      +++.++.....|+..+.... .+.|+++|+||.|+........    ..+..++.+.++.++++||++      ++||++
T Consensus        78 t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~  156 (164)
T cd04162          78 ADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKD  156 (164)
T ss_pred             CCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHH
Confidence            99999999888888876543 5799999999999865543321    223455556678899999998      999999


Q ss_pred             HHHHHHH
Q 028466          162 LFRKIAA  168 (208)
Q Consensus       162 ~~~~l~~  168 (208)
                      +|+.++.
T Consensus       157 ~~~~~~~  163 (164)
T cd04162         157 LLSQLIN  163 (164)
T ss_pred             HHHHHhc
Confidence            9998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=2e-29  Score=181.50  Aligned_cols=157  Identities=22%  Similarity=0.319  Sum_probs=123.1

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.+||+++|.+|||||||++++..+.+. .+.++.+.++..  ....  .+.+.+||+||++.+...+..+++++|++|
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii   85 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLI   85 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            45799999999999999999999877774 356666655432  3333  378999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-----cCCeEEEeecCCCCCHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-----LNVMFIETSAKAGFNIK  160 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~v~  160 (208)
                      +|||++++++++....|+..+.... ..+.|++||+||.|+.+..  ...++......     ..+.++++||++|.|++
T Consensus        86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (175)
T smart00177       86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY  163 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence            9999999999999888888775432 3568999999999985432  22333332221     12357789999999999


Q ss_pred             HHHHHHHHHc
Q 028466          161 ALFRKIAAAL  170 (208)
Q Consensus       161 ~~~~~l~~~~  170 (208)
                      ++|++|.+.+
T Consensus       164 e~~~~l~~~~  173 (175)
T smart00177      164 EGLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHHh
Confidence            9999998765

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=2.4e-28  Score=177.75  Aligned_cols=160  Identities=34%  Similarity=0.586  Sum_probs=133.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      +.||+|+|++|+|||||++++..+.+...+.++....+ ...+.+++..+.+.+||++|++.+......++..+|+++++
T Consensus         1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv   79 (187)
T cd04129           1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG   79 (187)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence            36999999999999999999998888776666654443 34556677778899999999998887777788999999999


Q ss_pred             EeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcC----------ccCcCHHHHHHHHHHcCC-eEEEeecCCC
Q 028466           89 YDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD----------KRQVSIEEGEAKARELNV-MFIETSAKAG  156 (208)
Q Consensus        89 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~S~~~~  156 (208)
                      ||+++.++++.+. .|+..+.... .+.|+++|+||.|+.+          .+.....+...+++..+. .++++||+++
T Consensus        80 ~~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  158 (187)
T cd04129          80 FAVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence            9999999999985 5888887654 4699999999999853          234456678888888885 8999999999


Q ss_pred             CCHHHHHHHHHHHc
Q 028466          157 FNIKALFRKIAAAL  170 (208)
Q Consensus       157 ~~v~~~~~~l~~~~  170 (208)
                      .|++++|+++.+.+
T Consensus       159 ~~v~~~f~~l~~~~  172 (187)
T cd04129         159 EGVDDVFEAATRAA  172 (187)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999999877

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=1e-28  Score=176.89  Aligned_cols=157  Identities=22%  Similarity=0.370  Sum_probs=126.2

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (208)
                      ||+++|.+|||||||+++|.+..+.. +.++.+.++.  .+...  .+.+.+||+||++.+...+..+++++|++++|+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999887653 5666654443  33343  4789999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC------CeEEEeecCCCCCHHHHH
Q 028466           91 VASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN------VMFIETSAKAGFNIKALF  163 (208)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~S~~~~~~v~~~~  163 (208)
                      ++++++++.+..|+..+.... ..+.|++||+||.|+..  .....+++.++....      +.++++||++|.|++++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            999999999999888887543 24589999999999853  345566666554222      368899999999999999


Q ss_pred             HHHHHHcCCCc
Q 028466          164 RKIAAALPGME  174 (208)
Q Consensus       164 ~~l~~~~~~~~  174 (208)
                      ++|.+.+.+.+
T Consensus       154 ~~l~~~~~~~~  164 (169)
T cd04158         154 DWLSRQLVAAG  164 (169)
T ss_pred             HHHHHHHhhcc
Confidence            99998876543

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=5.2e-28  Score=176.83  Aligned_cols=148  Identities=22%  Similarity=0.354  Sum_probs=126.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC-----CeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-----DRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (208)
                      +||+++|..|||||||++++.++.+...+.++++.++....+.++     +..+.+.||||+|++.|..+...+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988888888877766666653     466889999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhc-------------------CCCCeEEEEEeCCCCcCccCcCHH----HHHHHH
Q 028466           85 AVIVYDVASRQSFLNTTKWVEEVRTER-------------------GSDVIIVLVGNKTDLVDKRQVSIE----EGEAKA  141 (208)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~~iivv~nK~D~~~~~~~~~~----~~~~~~  141 (208)
                      +|+|||++++++++.+..|+..+....                   ..+.|++||+||.|+.+++.....    ....++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999987642                   246899999999999765444333    345667


Q ss_pred             HHcCCeEEEeecCCCC
Q 028466          142 RELNVMFIETSAKAGF  157 (208)
Q Consensus       142 ~~~~~~~~~~S~~~~~  157 (208)
                      .+.+++.++.++.+..
T Consensus       161 ~~~~~~~i~~~c~~~~  176 (202)
T cd04102         161 EQGNAEEINLNCTNGR  176 (202)
T ss_pred             HhcCCceEEEecCCcc
Confidence            8889999999998764

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd00157 Rho Rho (Ras homology) family

Probab=99.96  E-value=5e-28  Score=173.43  Aligned_cols=157  Identities=37%  Similarity=0.590  Sum_probs=130.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+++|.+|+|||||+++|+++.+...+.++.. +.........+..+.+.+||+||++.+......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            5899999999999999999999988666666654 334445567788889999999999988888888889999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCcc-----------CcCHHHHHHHHHHcCC-eEEEeecCCC
Q 028466           90 DVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKR-----------QVSIEEGEAKARELNV-MFIETSAKAG  156 (208)
Q Consensus        90 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~S~~~~  156 (208)
                      |+++++++.... .|+..+.... .+.|+++|+||.|+.+..           .+...+...+...++. .++++|++++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            999999998854 5666665543 479999999999986544           2346677788888887 9999999999


Q ss_pred             CCHHHHHHHHHH
Q 028466          157 FNIKALFRKIAA  168 (208)
Q Consensus       157 ~~v~~~~~~l~~  168 (208)
                      .|+++++++|.+
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.96  E-value=3.3e-29  Score=177.64  Aligned_cols=152  Identities=22%  Similarity=0.355  Sum_probs=117.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+++|.+|||||||++++..+.+. .+.++.+.++.  .+...  .+.+.+||+||++.+...+..+++++|++|+|+
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            48999999999999999999888776 35666665442  23333  478999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhh-cCCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCCCCHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAGFNIKALF  163 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v~~~~  163 (208)
                      |++++.+++....++..+... ...+.|++|++||.|+.+..  ...++.....     ...+.++++||++|.|++++|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            999999999988877776543 22468999999999985432  2223222221     123457899999999999999


Q ss_pred             HHHHH
Q 028466          164 RKIAA  168 (208)
Q Consensus       164 ~~l~~  168 (208)
                      ++|.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=2.9e-28  Score=175.17  Aligned_cols=155  Identities=23%  Similarity=0.351  Sum_probs=123.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      +..++|+++|++|+|||||+++|.+..+. .+.++.+.  ....+.+++  +.+.+||+||++.+...+..+++++|+++
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   86 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGF--QIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALI   86 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            56799999999999999999999987543 44555553  333444543  68999999999999989999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhh-cCCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCCCCHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAGFNIK  160 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v~  160 (208)
                      +|+|+++++++.....|+..+... ...+.|+++|+||+|+.+..  ...++..+..     ..+++++++||++|.|++
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  164 (173)
T cd04154          87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLL  164 (173)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence            999999999999888888777543 23579999999999986432  3445555443     235689999999999999


Q ss_pred             HHHHHHHH
Q 028466          161 ALFRKIAA  168 (208)
Q Consensus       161 ~~~~~l~~  168 (208)
                      ++|++|..
T Consensus       165 ~l~~~l~~  172 (173)
T cd04154         165 QGIDWLVD  172 (173)
T ss_pred             HHHHHHhc
Confidence            99999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=4.6e-28  Score=175.37  Aligned_cols=158  Identities=20%  Similarity=0.330  Sum_probs=121.7

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+++||+++|++|||||||++++..+.+.. +.++.+.++.  .+...  .+.+.+|||||++.+...+..+++++|++|
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI   89 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLI   89 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            356999999999999999999998887764 4566665443  33333  478999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhh-cCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-----cCCeEEEeecCCCCCHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-----LNVMFIETSAKAGFNIK  160 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~v~  160 (208)
                      +|+|++++++++....++..+... ...+.|++||+||.|+.+..  ...++......     ..+.++++||++|.|++
T Consensus        90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~  167 (182)
T PTZ00133         90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY  167 (182)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence            999999999999888777766433 22468999999999985422  22222222111     12356799999999999


Q ss_pred             HHHHHHHHHcC
Q 028466          161 ALFRKIAAALP  171 (208)
Q Consensus       161 ~~~~~l~~~~~  171 (208)
                      ++|++|.+.+.
T Consensus       168 e~~~~l~~~i~  178 (182)
T PTZ00133        168 EGLDWLSANIK  178 (182)
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>PTZ00099 rab6; Provisional

Probab=99.96  E-value=1.4e-27  Score=171.58  Aligned_cols=145  Identities=70%  Similarity=1.080  Sum_probs=130.8

Q ss_pred             CCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 028466           32 DKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTER  111 (208)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  111 (208)
                      +.|.+.+.+|++.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++++|+.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            46777888999999988888899999999999999999999999999999999999999999999999999999987766


Q ss_pred             CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHHcCCCccC
Q 028466          112 GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETL  176 (208)
Q Consensus       112 ~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~~~~~~~  176 (208)
                      ..+.|++||+||+|+...+.+...++..++..++..|+++||+++.|++++|++|.+.+++.+..
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~  147 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS  147 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence            56789999999999976667778888888888899999999999999999999999999776544

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=2.2e-27  Score=169.50  Aligned_cols=159  Identities=26%  Similarity=0.384  Sum_probs=123.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+++|..|+|||||+++|.++.+...+..+..  .......+++..+.+.+|||||++.+...+..++..+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP--EITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc--ceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            4899999999999999999999988665433221  22333445566789999999999988887888889999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC--HHHHHHHHHHcC--CeEEEeecCCCCCHHHHHH
Q 028466           90 DVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS--IEEGEAKARELN--VMFIETSAKAGFNIKALFR  164 (208)
Q Consensus        90 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--~~~~~~~~~~~~--~~~~~~S~~~~~~v~~~~~  164 (208)
                      |++++++++.+. .|+..+.... .+.|+++|+||+|+.+.....  ..+.......+.  ..++++||+++.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999975 6777776544 479999999999996554321  223333333332  3799999999999999999


Q ss_pred             HHHHHcC
Q 028466          165 KIAAALP  171 (208)
Q Consensus       165 ~l~~~~~  171 (208)
                      .+.+.+.
T Consensus       158 ~~~~~~~  164 (166)
T cd01893         158 YAQKAVL  164 (166)
T ss_pred             HHHHHhc
Confidence            9988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.96  E-value=4e-30  Score=176.83  Aligned_cols=173  Identities=35%  Similarity=0.556  Sum_probs=158.3

Q ss_pred             CCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccC
Q 028466            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   82 (208)
Q Consensus         3 ~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   82 (208)
                      |..-..-+|++|+|..++||||+|.+++.+-|...+-.+++.++....+.++...+...+||++|+++|..+...|++++
T Consensus        14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrga   93 (246)
T KOG4252|consen   14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGA   93 (246)
T ss_pred             chhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccc
Confidence            33445789999999999999999999999999999999999999888887877777889999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHH
Q 028466           83 SVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL  162 (208)
Q Consensus        83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~  162 (208)
                      .+.++||+-+|..+|+...+|++.+.... ..+|.++|-||+|+.++..+...+++.+++.++..+|-+|+++..|+.++
T Consensus        94 qa~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~v  172 (246)
T KOG4252|consen   94 QASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHV  172 (246)
T ss_pred             cceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHH
Confidence            99999999999999999999999998766 46999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCccC
Q 028466          163 FRKIAAALPGMETL  176 (208)
Q Consensus       163 ~~~l~~~~~~~~~~  176 (208)
                      |..|.+.+.+....
T Consensus       173 F~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  173 FAYLAEKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999887654433

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=3.3e-27  Score=169.84  Aligned_cols=155  Identities=22%  Similarity=0.366  Sum_probs=120.8

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.++|+++|.+|+|||||++++..+.+.. +.++.+.++.  .+..+.  ..+.+||+||++.+...+..+++.+|++|
T Consensus        13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   87 (174)
T cd04153          13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVI   87 (174)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence            356899999999999999999999888764 3556554432  334443  68999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHH-----HHcCCeEEEeecCCCCCHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKA-----RELNVMFIETSAKAGFNIK  160 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~  160 (208)
                      +|+|+++++++.....++..+.... ..+.|+++++||+|+.+.  ....++.+..     ...+++++++||++++|++
T Consensus        88 ~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~  165 (174)
T cd04153          88 LVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLP  165 (174)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHH
Confidence            9999999988888777777665433 256899999999998542  2233332222     2234579999999999999


Q ss_pred             HHHHHHHH
Q 028466          161 ALFRKIAA  168 (208)
Q Consensus       161 ~~~~~l~~  168 (208)
                      ++|++|.+
T Consensus       166 e~~~~l~~  173 (174)
T cd04153         166 EGLDWIAS  173 (174)
T ss_pred             HHHHHHhc
Confidence            99999964

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04157 Arl6 Arl6 subfamily

Probab=99.95  E-value=2.2e-27  Score=168.64  Aligned_cols=152  Identities=18%  Similarity=0.257  Sum_probs=116.9

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCC-CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +|+++|.+|||||||+++|.+..+ ...+.++.+....  .+..  ..+.+.+|||||++.+...+..+++++|++|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998764 4455666654332  2333  3468999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhc---CCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCCCCHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTER---GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAGFNIKA  161 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v~~  161 (208)
                      |++++.++.....|+..+....   ..+.|+++|+||+|+.+...  ..+......     .....++++||+++.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            9999999988888887775532   24799999999999864322  222222211     1124689999999999999


Q ss_pred             HHHHHHH
Q 028466          162 LFRKIAA  168 (208)
Q Consensus       162 ~~~~l~~  168 (208)
                      +|++|.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd00879 Sar1 Sar1 subfamily

Probab=99.95  E-value=9.2e-27  Score=169.79  Aligned_cols=157  Identities=22%  Similarity=0.321  Sum_probs=125.1

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.+||+++|++|||||||++++.++.+. .+.++.+..  ...+.+++  ..+.+||+||+..+...+..+++++|+++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45799999999999999999999988764 345555433  33445554  67899999999999888899999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHH----------------cCCeEE
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARE----------------LNVMFI  149 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~  149 (208)
                      +|+|+++.+++.....++..+..... .+.|+++++||+|+..  .....+++.....                ....++
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF  169 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence            99999999899888888877765433 5689999999999853  3445666665543                124689


Q ss_pred             EeecCCCCCHHHHHHHHHHHc
Q 028466          150 ETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       150 ~~S~~~~~~v~~~~~~l~~~~  170 (208)
                      ++||++++|++++|++|.+.+
T Consensus       170 ~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         170 MCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             EeEecCCCChHHHHHHHHhhC
Confidence            999999999999999998753

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.95  E-value=5.8e-27  Score=167.44  Aligned_cols=153  Identities=20%  Similarity=0.246  Sum_probs=119.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (208)
                      +|+++|.+|||||||++++.++ +...+.++.+..  ...+...+  +.+.+||+||+..+..++..+++++|++|+|+|
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999976 655666776644  33444443  679999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHH----HHHHHHHHcC--CeEEEeecCCC------C
Q 028466           91 VASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIE----EGEAKARELN--VMFIETSAKAG------F  157 (208)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~----~~~~~~~~~~--~~~~~~S~~~~------~  157 (208)
                      ++++.+++.+..|+..+..... .+.|+++|+||.|+.........    .+..++.+.+  +.++++||++|      .
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            9999999999999888875532 57899999999998654321111    1122222222  46888999998      8


Q ss_pred             CHHHHHHHHHH
Q 028466          158 NIKALFRKIAA  168 (208)
Q Consensus       158 ~v~~~~~~l~~  168 (208)
                      |+.+.|+||.+
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=3.7e-27  Score=167.25  Aligned_cols=152  Identities=24%  Similarity=0.404  Sum_probs=117.3

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (208)
                      +|+++|++|||||||+++|.++.+... .++.+.++.  .+.. +..+.+.+||+||++.+...+..++..+|++|+|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcceE--EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999999887643 455554332  2333 234689999999999999889999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHH------HHcCCeEEEeecCCCCCHHHHH
Q 028466           91 VASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKA------RELNVMFIETSAKAGFNIKALF  163 (208)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~S~~~~~~v~~~~  163 (208)
                      ++++.++.....|+..+.... ..+.|+++|+||.|+....  ...++....      ...+++++++||++|+|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            999988988888887776543 2579999999999985322  122232221      1224579999999999999999


Q ss_pred             HHHHH
Q 028466          164 RKIAA  168 (208)
Q Consensus       164 ~~l~~  168 (208)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=7.5e-27  Score=166.76  Aligned_cols=152  Identities=24%  Similarity=0.405  Sum_probs=117.4

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCC------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (208)
                      +|+|+|++|+|||||+++|.+...      ...+.++.+.+.  ..+.+++  ..+.+|||||++.+...+..+++.+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999976432      223344444443  3344443  689999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-------cCCeEEEeecCCC
Q 028466           85 AVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-------LNVMFIETSAKAG  156 (208)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~S~~~~  156 (208)
                      +++|+|+++++++.....++..+.... ..+.|+++++||+|+...  ....+...+...       .+++++++||++|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            999999999888888888887776543 257899999999998543  333444444333       2458999999999


Q ss_pred             CCHHHHHHHHHH
Q 028466          157 FNIKALFRKIAA  168 (208)
Q Consensus       157 ~~v~~~~~~l~~  168 (208)
                      .|+++++++|.+
T Consensus       155 ~gv~e~~~~l~~  166 (167)
T cd04160         155 TGVREGIEWLVE  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999965

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.95  E-value=3.1e-27  Score=168.25  Aligned_cols=167  Identities=33%  Similarity=0.536  Sum_probs=149.3

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC-CeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      +..+|++|||...+|||+|+-.+..+.|+..|.|+.. +.+...+..+ ++.+.+.+|||+|+++|.+++...+.++|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            4568999999999999999999999999999999998 6667777784 9999999999999999999887889999999


Q ss_pred             EEEEeCCChhhHHh-HHHHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcC-CeEEEe
Q 028466           86 VIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELN-VMFIET  151 (208)
Q Consensus        86 i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  151 (208)
                      +++|++.++++++. ...|+.++..++ +++|+|+|++|.|+..+            ..+...+....+++.| ..|+++
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            99999999999999 578999888776 78999999999999742            3567888999999999 589999


Q ss_pred             ecCCCCCHHHHHHHHHHHcCCCcc
Q 028466          152 SAKAGFNIKALFRKIAAALPGMET  175 (208)
Q Consensus       152 S~~~~~~v~~~~~~l~~~~~~~~~  175 (208)
                      ||++..|++++|+.........+.
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhcccc
Confidence            999999999999999988865554

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=5.8e-26  Score=163.28  Aligned_cols=157  Identities=24%  Similarity=0.357  Sum_probs=125.8

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.+||+++|..|+|||||++++..+.... ..||.+.  ....+.+.+  +.+.+||.+|+..++..|..|+.++|++|
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~--~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGF--NIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSE--EEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc-cCccccc--ccceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence            678999999999999999999998765543 4555554  344455655  67999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH------cCCeEEEeecCCCCCH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE------LNVMFIETSAKAGFNI  159 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~S~~~~~~v  159 (208)
                      ||+|.++++.+.+....+..+.... ..+.|+++++||.|+.+.  ....++......      ..+.++.+|+.+|+|+
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv  164 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV  164 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred             EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence            9999999988888887777776543 257999999999998653  334445444332      2346899999999999


Q ss_pred             HHHHHHHHHHc
Q 028466          160 KALFRKIAAAL  170 (208)
Q Consensus       160 ~~~~~~l~~~~  170 (208)
                      .+.++||.+.+
T Consensus       165 ~e~l~WL~~~~  175 (175)
T PF00025_consen  165 DEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=3.4e-26  Score=175.19  Aligned_cols=141  Identities=21%  Similarity=0.373  Sum_probs=121.8

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECC-------------eEEEEEEEecCCchhhc
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-------------RTVRLQLWDTAGQERFR   72 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~G~~~~~   72 (208)
                      ....+||+|+|..|||||||+++|.++.+...+.++++.++....+.+++             ..+.+.||||+|++.|.
T Consensus        18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr   97 (334)
T PLN00023         18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK   97 (334)
T ss_pred             CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence            46789999999999999999999999999888889998887777666642             45789999999999999


Q ss_pred             cchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC------------CCCeEEEEEeCCCCcCccC------cCH
Q 028466           73 SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG------------SDVIIVLVGNKTDLVDKRQ------VSI  134 (208)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~iivv~nK~D~~~~~~------~~~  134 (208)
                      .++..+++++|++|+|||+++.++++.+..|+..+.....            .++|++||+||+|+...+.      ...
T Consensus        98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~  177 (334)
T PLN00023         98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLV  177 (334)
T ss_pred             hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccH
Confidence            9999999999999999999999999999999999987531            3589999999999965421      357


Q ss_pred             HHHHHHHHHcCC
Q 028466          135 EEGEAKARELNV  146 (208)
Q Consensus       135 ~~~~~~~~~~~~  146 (208)
                      +++++++.+.++
T Consensus       178 e~a~~~A~~~g~  189 (334)
T PLN00023        178 DAARQWVEKQGL  189 (334)
T ss_pred             HHHHHHHHHcCC
Confidence            899999998874

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=2.2e-26  Score=163.02  Aligned_cols=151  Identities=21%  Similarity=0.323  Sum_probs=113.3

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (208)
                      ||+++|.+++|||||++++..+.+.. +.++.+.+..  .+.+.  ...+.+|||||++.+...+..++..+|++|+|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998777653 3455444332  33333  3689999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHh-hcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHH
Q 028466           91 VASRQSFLNTTKWVEEVRT-ERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAGFNIKALFR  164 (208)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v~~~~~  164 (208)
                      ++++.++.....++..+.+ ....+.|+++|+||+|+.+..  ...++.....     ..+.+++++|++++.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            9998888776666655433 222468999999999985432  1222222211     1134699999999999999999


Q ss_pred             HHHH
Q 028466          165 KIAA  168 (208)
Q Consensus       165 ~l~~  168 (208)
                      +|.+
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9975

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=1.6e-26  Score=163.71  Aligned_cols=151  Identities=23%  Similarity=0.332  Sum_probs=119.0

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (208)
                      ||+++|.+|||||||++++++..+. .+.++.+...  ..+.+..  ..+.+||+||+..+...+..+++.+|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcce--EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            6899999999999999999988743 3445554333  3344443  689999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-----cCCeEEEeecCCCCCHHHHHH
Q 028466           91 VASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-----LNVMFIETSAKAGFNIKALFR  164 (208)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~v~~~~~  164 (208)
                      +++++++.....++..+.... ..+.|+++|+||+|+....  ..++.......     ...+++++|+++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            999999999888887776543 3578999999999986533  23333333332     345899999999999999999


Q ss_pred             HHHH
Q 028466          165 KIAA  168 (208)
Q Consensus       165 ~l~~  168 (208)
                      +|..
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.94  E-value=1.1e-25  Score=163.34  Aligned_cols=156  Identities=17%  Similarity=0.249  Sum_probs=120.9

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.++|+++|.+|+|||||++++.++.+.. +.++.+...  ..+..++  +++.+||+||+..+...+..++.++|++|
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            456999999999999999999999876643 344443322  2333443  68999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH------------cCCeEEEeec
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE------------LNVMFIETSA  153 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~S~  153 (208)
                      +|+|+++++++.....++..+.+.. ..+.|+++|+||.|+..  .....++++...-            ....++++||
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            9999999999988887777765432 25689999999999853  3344455444321            1235899999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 028466          154 KAGFNIKALFRKIAAA  169 (208)
Q Consensus       154 ~~~~~v~~~~~~l~~~  169 (208)
                      +++.|++++++||.+.
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=2e-25  Score=157.58  Aligned_cols=152  Identities=24%  Similarity=0.382  Sum_probs=120.0

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (208)
                      .|+++|++|+|||||++++.+..+...+.++.+.+...  +...+  +.+.+||+||++.+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            37999999999999999999999887777777655543  33333  689999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHH-----HHcCCeEEEeecCCCCCHHHHHH
Q 028466           91 VASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKA-----RELNVMFIETSAKAGFNIKALFR  164 (208)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~~~~  164 (208)
                      +++++++.....++..+.... ..+.|+++|+||.|+.....  ..+.....     ....+.++++|++++.|++++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  154 (159)
T cd04159          77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD  154 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence            999888888777777765432 25689999999999864322  22222221     12236789999999999999999


Q ss_pred             HHHH
Q 028466          165 KIAA  168 (208)
Q Consensus       165 ~l~~  168 (208)
                      +|.+
T Consensus       155 ~l~~  158 (159)
T cd04159         155 WLIK  158 (159)
T ss_pred             HHhh
Confidence            9975

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.94  E-value=3.2e-25  Score=150.51  Aligned_cols=161  Identities=22%  Similarity=0.342  Sum_probs=128.4

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .++++|+++|..|+||||++++|.+.. .+...|+.+  +..++..+..  +++++||.+|+..++..|..|+..+|++|
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglI   88 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLI   88 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence            468999999999999999999998776 333345554  5555555655  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHh-hcCCCCeEEEEEeCCCCcCccCcCH----HHHHHHHHHcCCeEEEeecCCCCCHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRT-ERGSDVIIVLVGNKTDLVDKRQVSI----EEGEAKARELNVMFIETSAKAGFNIKA  161 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~S~~~~~~v~~  161 (208)
                      ||+|.+|+..+++-...+..+.. ......|++|++||.|+.+.-....    ...+..+.....+++.||+.+|+++.+
T Consensus        89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~  168 (185)
T KOG0073|consen   89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLE  168 (185)
T ss_pred             EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHH
Confidence            99999999999886666666543 3335689999999999975432221    223445566678999999999999999


Q ss_pred             HHHHHHHHcCC
Q 028466          162 LFRKIAAALPG  172 (208)
Q Consensus       162 ~~~~l~~~~~~  172 (208)
                      -++||...+.+
T Consensus       169 gidWL~~~l~~  179 (185)
T KOG0073|consen  169 GIDWLCDDLMS  179 (185)
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=3.4e-25  Score=158.35  Aligned_cols=156  Identities=18%  Similarity=0.176  Sum_probs=108.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc---------chhhhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---------LIPSYIR   80 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~~~~   80 (208)
                      .+|+++|.+|+|||||+++|.+..+.....+..+.+.........  .+.+.+|||||+.....         .......
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            379999999999999999999887743322333333333333333  36899999999742110         0111123


Q ss_pred             cCCEEEEEEeCCChhh--HHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466           81 DSSVAVIVYDVASRQS--FLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN  158 (208)
Q Consensus        81 ~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (208)
                      .+|++++|+|+++..+  ++....|+..+.... .+.|+++|+||+|+....+..  ....+....+..++++||+++.|
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEG  155 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCC
Confidence            3689999999997654  355566777776443 368999999999996543322  24455555567899999999999


Q ss_pred             HHHHHHHHHHHc
Q 028466          159 IKALFRKIAAAL  170 (208)
Q Consensus       159 v~~~~~~l~~~~  170 (208)
                      +++++++|.+.+
T Consensus       156 i~~l~~~l~~~~  167 (168)
T cd01897         156 VDEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=5.3e-25  Score=158.97  Aligned_cols=155  Identities=19%  Similarity=0.263  Sum_probs=111.7

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC-------CCCCccc------eeeeeeeEEE--EEE---CCeEEEEEEEecCCchhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK-------FDNTYQA------TIGIDFLSKT--MYL---EDRTVRLQLWDTAGQERFR   72 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~-------~~~~~~~------~~~~~~~~~~--~~~---~~~~~~~~i~D~~G~~~~~   72 (208)
                      +|+++|..++|||||+++|++..       +...+.+      +.++++....  ..+   ++..+.+.+|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998632       1111111      1122332222  222   5567889999999999999


Q ss_pred             cchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC---eEE
Q 028466           73 SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV---MFI  149 (208)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~  149 (208)
                      ..+..+++.+|++|+|+|++++.+......|....    ..++|+++|+||+|+.+..  ......+++..+++   .++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence            99999999999999999999865555555543322    2358899999999985422  12223445555555   489


Q ss_pred             EeecCCCCCHHHHHHHHHHHcC
Q 028466          150 ETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       150 ~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      ++||++|.|+++++++|.+.++
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhCC
Confidence            9999999999999999998763

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.93  E-value=1.7e-24  Score=152.48  Aligned_cols=158  Identities=28%  Similarity=0.439  Sum_probs=126.5

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      ++||+++|.+|+|||||++++....+...+.++.+.+.....+..++..+.+.+||+||+..+...+..+.++++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            47999999999999999999999988777788888888777777777668899999999999988888889999999999


Q ss_pred             EeCCCh-hhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           89 YDVASR-QSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        89 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      +|.... .++.... .|...+......+.|+++++||.|+.... ........+.......++++|+.++.|+.+++++|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            999866 5665543 66666665544478999999999996543 22222233333335689999999999999999987


Q ss_pred             H
Q 028466          167 A  167 (208)
Q Consensus       167 ~  167 (208)
                      .
T Consensus       160 ~  160 (161)
T TIGR00231       160 E  160 (161)
T ss_pred             h
Confidence            4

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01898 Obg Obg subfamily

Probab=99.93  E-value=7e-25  Score=156.96  Aligned_cols=158  Identities=18%  Similarity=0.184  Sum_probs=112.3

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh----hccchhhh---hccCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPSY---IRDSS   83 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d   83 (208)
                      +|+++|.+|+|||||+++|.+........+..+.+.....+.+.+. ..+.+|||||+..    +..+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            6899999999999999999876542222222233333333334432 3799999999642    22223333   45699


Q ss_pred             EEEEEEeCCCh-hhHHhHHHHHHHHHhhcC--CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc-CCeEEEeecCCCCCH
Q 028466           84 VAVIVYDVASR-QSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL-NVMFIETSAKAGFNI  159 (208)
Q Consensus        84 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~v  159 (208)
                      ++++|+|++++ ++++.+..|+..+.....  .+.|+++|+||+|+.+.... ......+.... +.+++++|++++.|+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999998 788888888888766532  36899999999998654433 33444555553 678999999999999


Q ss_pred             HHHHHHHHHHc
Q 028466          160 KALFRKIAAAL  170 (208)
Q Consensus       160 ~~~~~~l~~~~  170 (208)
                      +++|++|.+.+
T Consensus       160 ~~l~~~i~~~~  170 (170)
T cd01898         160 DELLRKLAELL  170 (170)
T ss_pred             HHHHHHHHhhC
Confidence            99999998753

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.93  E-value=7.9e-25  Score=171.11  Aligned_cols=162  Identities=16%  Similarity=0.135  Sum_probs=121.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh-------hccchhhhhccC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRDS   82 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~   82 (208)
                      ..|+|+|.+|+|||||+++|+.........+..|.......+.+.. ...+.+||+||...       ....+...++.+
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            4689999999999999999997654333334445555555555532 24699999999642       222334456789


Q ss_pred             CEEEEEEeCCChhhHHhHHHHHHHHHhhcC--CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466           83 SVAVIVYDVASRQSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK  160 (208)
Q Consensus        83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (208)
                      +++|+|+|+++.++++.+..|...+..+..  .+.|+++|+||+|+.+..+......+.++...+.+++++||++++|++
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~  317 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD  317 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence            999999999987788888888888876543  468999999999997554443444555556667899999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028466          161 ALFRKIAAALPG  172 (208)
Q Consensus       161 ~~~~~l~~~~~~  172 (208)
                      +++++|.+.+.+
T Consensus       318 eL~~~L~~~l~~  329 (335)
T PRK12299        318 ELLRALWELLEE  329 (335)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998754

>cd01878 HflX HflX subfamily

Probab=99.93  E-value=7.6e-25  Score=161.44  Aligned_cols=157  Identities=21%  Similarity=0.241  Sum_probs=114.1

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh---------hccchhh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPS   77 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~   77 (208)
                      ...++|+|+|++|||||||++++++..+.....+..+.+.....+.+.+. ..+.+|||||...         +.... .
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            34589999999999999999999988754333333444444444445443 2799999999732         22221 2


Q ss_pred             hhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCC
Q 028466           78 YIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGF  157 (208)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  157 (208)
                      .+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+.+....     ...+...+.+++++|++++.
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~  191 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGE  191 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCC
Confidence            3678999999999998888777767766665544456899999999998654322     13444556789999999999


Q ss_pred             CHHHHHHHHHHHc
Q 028466          158 NIKALFRKIAAAL  170 (208)
Q Consensus       158 ~v~~~~~~l~~~~  170 (208)
                      |+++++++|.+.+
T Consensus       192 gi~~l~~~L~~~~  204 (204)
T cd01878         192 GLDELLEAIEELL  204 (204)
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999998753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.93  E-value=3.5e-24  Score=143.90  Aligned_cols=174  Identities=24%  Similarity=0.312  Sum_probs=144.9

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCC--CccceeeeeeeEEEE-EECCeEEEEEEEecCCchhh-ccchhhhhccCC
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN--TYQATIGIDFLSKTM-YLEDRTVRLQLWDTAGQERF-RSLIPSYIRDSS   83 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d   83 (208)
                      +..|++++|..++|||+++++++.++...  ++.+|++. ++...+ +..+..-.+.++||.|...+ ..+...|+.-+|
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiED-iY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIED-IYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhh-heeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            56899999999999999999999776643  45566663 334333 34455568999999997776 557788899999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHH
Q 028466           84 VAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL  162 (208)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~  162 (208)
                      ++++||+..+++||+.+...-..|..... ..+||+|++||.|+.+..++..+.+..|+....+.++++++.++.++-+.
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep  166 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP  166 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence            99999999999999987766666655443 67899999999999988899999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCccCCccccc
Q 028466          163 FRKIAAALPGMETLSSTKQE  182 (208)
Q Consensus       163 ~~~l~~~~~~~~~~~~~~~~  182 (208)
                      |..+...+...+.++.....
T Consensus       167 f~~l~~rl~~pqskS~Fpl~  186 (198)
T KOG3883|consen  167 FTYLASRLHQPQSKSTFPLS  186 (198)
T ss_pred             HHHHHHhccCCcccccCcch
Confidence            99999999888777776655

>cd04155 Arl3 Arl3 subfamily

Probab=99.93  E-value=2.8e-24  Score=154.37  Aligned_cols=155  Identities=21%  Similarity=0.333  Sum_probs=115.7

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.++|+++|++|+|||||++++.+..+.. +.++.+.+.  ..+..++  ..+.+||+||+..+...+..+++.+|+++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii   86 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLI   86 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence            457999999999999999999999876542 344544333  2333444  57999999999999888888999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC-----CeEEEeecCCCCCHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN-----VMFIETSAKAGFNIK  160 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~  160 (208)
                      +|+|+++..++.....++..+.... ..+.|+++++||.|+.....  ..++........     ..++++||++++|++
T Consensus        87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~  164 (173)
T cd04155          87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEEIAEALNLHDLRDRTWHIQACSAKTGEGLQ  164 (173)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHHHHHHcCCcccCCCeEEEEEeECCCCCCHH
Confidence            9999999888887777766654332 24689999999999854322  222222211111     247899999999999


Q ss_pred             HHHHHHHH
Q 028466          161 ALFRKIAA  168 (208)
Q Consensus       161 ~~~~~l~~  168 (208)
                      ++|+||.+
T Consensus       165 ~~~~~l~~  172 (173)
T cd04155         165 EGMNWVCK  172 (173)
T ss_pred             HHHHHHhc
Confidence            99999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04171 SelB SelB subfamily

Probab=99.93  E-value=1.2e-24  Score=154.71  Aligned_cols=155  Identities=21%  Similarity=0.166  Sum_probs=107.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC---CCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD---KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      +.|+++|.+|+|||||+++|++.   .+...+.++.+++.....+.+.+ ...+.+|||||++.+......++.++|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            36899999999999999999864   33333344555555555555542 357999999999999877777889999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC--cCHHHHHHHHHH---cCCeEEEeecCCCCCHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ--VSIEEGEAKARE---LNVMFIETSAKAGFNIKA  161 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~S~~~~~~v~~  161 (208)
                      +|+|+++.. .......+..+. ..+ ..|+++|+||+|+.+...  ....+..+....   .+.+++++|++++.|+++
T Consensus        80 ~V~d~~~~~-~~~~~~~~~~~~-~~~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  156 (164)
T cd04171          80 LVVAADEGI-MPQTREHLEILE-LLG-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEE  156 (164)
T ss_pred             EEEECCCCc-cHhHHHHHHHHH-HhC-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHH
Confidence            999998621 111122222222 111 248999999999964321  112344444444   357899999999999999


Q ss_pred             HHHHHHH
Q 028466          162 LFRKIAA  168 (208)
Q Consensus       162 ~~~~l~~  168 (208)
                      +++.|.+
T Consensus       157 l~~~l~~  163 (164)
T cd04171         157 LKEYLDE  163 (164)
T ss_pred             HHHHHhh
Confidence            9998864

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=2e-23  Score=155.50  Aligned_cols=167  Identities=43%  Similarity=0.615  Sum_probs=136.4

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      +..+||+++|+.|+|||||+++|.++.+...+.++.+..+...........+.+.+|||+|++.++..+..++.++++++
T Consensus         3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l   82 (219)
T COG1100           3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL   82 (219)
T ss_pred             cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence            44599999999999999999999999999999999887777777777666788999999999999999999999999999


Q ss_pred             EEEeCCChhhHH-hHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc------------CcCHHHHHHHHHHc---CCeEEE
Q 028466           87 IVYDVASRQSFL-NTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR------------QVSIEEGEAKAREL---NVMFIE  150 (208)
Q Consensus        87 ~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~  150 (208)
                      +++|..+..++. ....|...+........|+++|+||+|+....            ..............   ...+++
T Consensus        83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (219)
T COG1100          83 IVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLE  162 (219)
T ss_pred             EEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeE
Confidence            999999854544 47888888887765679999999999997653            22222222222222   334899


Q ss_pred             eecC--CCCCHHHHHHHHHHHcCCC
Q 028466          151 TSAK--AGFNIKALFRKIAAALPGM  173 (208)
Q Consensus       151 ~S~~--~~~~v~~~~~~l~~~~~~~  173 (208)
                      +|+.  ++.+++++|..+...+...
T Consensus       163 ~s~~~~~~~~v~~~~~~~~~~~~~~  187 (219)
T COG1100         163 TSAKSLTGPNVNELFKELLRKLLEE  187 (219)
T ss_pred             eecccCCCcCHHHHHHHHHHHHHHh
Confidence            9999  9999999999999888544

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.92  E-value=7.6e-24  Score=151.25  Aligned_cols=157  Identities=18%  Similarity=0.179  Sum_probs=110.3

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC-CeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      .|+|+|.+|+|||||+++|....+.....++.+.+.....+... ...+.+.+|||||++.+...+..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            58999999999999999999888766554555544444444443 13468999999999999888888899999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCH-HHHHHHHH------HcCCeEEEeecCCCCCHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSI-EEGEAKAR------ELNVMFIETSAKAGFNIKAL  162 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~-~~~~~~~~------~~~~~~~~~S~~~~~~v~~~  162 (208)
                      |+++..... ....+..+..   .+.|+++|+||+|+........ ........      ...++++++|+++++|++++
T Consensus        82 d~~~~~~~~-~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQ-TIEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHH-HHHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            998742211 1112222222   3589999999999864321111 11111111      11357999999999999999


Q ss_pred             HHHHHHHcC
Q 028466          163 FRKIAAALP  171 (208)
Q Consensus       163 ~~~l~~~~~  171 (208)
                      +++|.+...
T Consensus       158 ~~~l~~~~~  166 (168)
T cd01887         158 LEAILLLAE  166 (168)
T ss_pred             HHHHHHhhh
Confidence            999988754

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.92  E-value=3e-24  Score=149.40  Aligned_cols=134  Identities=19%  Similarity=0.276  Sum_probs=99.2

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCch-----hhccchhhhhccCCEE
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-----RFRSLIPSYIRDSSVA   85 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~   85 (208)
                      ||+++|.+|||||||+++|.+..+.  +.++.+.+       +.     -.+|||||..     .+..+.. .++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------YN-----DGAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------Ec-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            8999999999999999999987652  23333222       11     1589999972     3433333 57899999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCCHHHHHH
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFNIKALFR  164 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~  164 (208)
                      |+|||++++.++.. ..|...+      ..|+++|+||+|+.+ .....++.++++...+. +++++||+++.|++++|+
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            99999999887754 2333221      248999999999864 33445666777777776 799999999999999999


Q ss_pred             HHH
Q 028466          165 KIA  167 (208)
Q Consensus       165 ~l~  167 (208)
                      +|.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.6e-24  Score=149.71  Aligned_cols=160  Identities=21%  Similarity=0.330  Sum_probs=131.3

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      .-++.+|+++|..++||||++.+|..++.... .||++...  ..+.+.+  +.+.+||.+|+++++..|..|+++.+++
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnV--E~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNV--ETVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccce--eEEEEcc--eEEEEEecCCCcccccchhhhccCCcEE
Confidence            45789999999999999999999988887655 67766444  4455554  7899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc-----CCeEEEeecCCCCCH
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL-----NVMFIETSAKAGFNI  159 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~v  159 (208)
                      |||+|.+|++.+.+.+..+..+..+.. .+.|+++++||.|+.....  ..++.+.....     .-.+..++|.+|+|+
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als--~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL  166 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS--AAEITNKLGLHSLRSRNWHIQSTCAISGEGL  166 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC--HHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence            999999999999998888888776664 6899999999999976543  33443333333     346888999999999


Q ss_pred             HHHHHHHHHHcCC
Q 028466          160 KALFRKIAAALPG  172 (208)
Q Consensus       160 ~~~~~~l~~~~~~  172 (208)
                      .+.++||.+.+..
T Consensus       167 ~egl~wl~~~~~~  179 (181)
T KOG0070|consen  167 YEGLDWLSNNLKK  179 (181)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998753

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.92  E-value=3.3e-24  Score=149.10  Aligned_cols=148  Identities=20%  Similarity=0.297  Sum_probs=109.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc------cchhhhh--cc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYI--RD   81 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~--~~   81 (208)
                      ++|+++|.||||||||+|+|++.+......|..|++.....+.+.+  ..+.++|+||.-...      .....++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            5899999999999999999999987666678888888888888877  579999999943322      2233343  58


Q ss_pred             CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHH
Q 028466           82 SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKA  161 (208)
Q Consensus        82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~  161 (208)
                      .|++|+|.|+++.+   .-.....++..   .+.|+++++||+|......... ....+.+.++++++++||++++|+++
T Consensus        79 ~D~ii~VvDa~~l~---r~l~l~~ql~e---~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNLE---RNLYLTLQLLE---LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGHH---HHHHHHHHHHH---TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCHH---HHHHHHHHHHH---cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            99999999998643   22233333433   3599999999999876544433 46777778899999999999999999


Q ss_pred             HHHHH
Q 028466          162 LFRKI  166 (208)
Q Consensus       162 ~~~~l  166 (208)
                      +++.|
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            99875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.92  E-value=3.5e-23  Score=144.52  Aligned_cols=153  Identities=48%  Similarity=0.785  Sum_probs=121.4

Q ss_pred             EEcCCCCcHHHHHHHhhcCCC-CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCC
Q 028466           14 FLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA   92 (208)
Q Consensus        14 vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   92 (208)
                      |+|++|+|||||++++.+... .....++. .+..............+.+||+||+..+......+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998877 44555555 6777777777677789999999999988888888899999999999999


Q ss_pred             ChhhHHhHHHHH-HHHHhhcCCCCeEEEEEeCCCCcCccCcCHHH-HHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           93 SRQSFLNTTKWV-EEVRTERGSDVIIVLVGNKTDLVDKRQVSIEE-GEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        93 ~~~s~~~~~~~~-~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      ++.++..+..|. .........+.|+++|+||+|+.......... .........++++++|+.++.|+++++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            998888877762 22333344679999999999986544333222 3444455568999999999999999999986

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.92  E-value=2e-23  Score=147.54  Aligned_cols=148  Identities=19%  Similarity=0.229  Sum_probs=111.8

Q ss_pred             EEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc------hhhhhc--cCCEE
Q 028466           14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYIR--DSSVA   85 (208)
Q Consensus        14 vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~~--~~d~~   85 (208)
                      |+|.+|+|||||++++.+..+.....++.+.+.....+.+++  ..+.+|||||+..+...      ...++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998875545556666666666676765  47999999999876642      455554  89999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      |+|+|+++++...   .+...+..   .++|+++|+||+|+.+...... ....+...++.+++++|+.++.|+++++++
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            9999998754432   33333332   3589999999999965443332 345666777889999999999999999999


Q ss_pred             HHHHc
Q 028466          166 IAAAL  170 (208)
Q Consensus       166 l~~~~  170 (208)
                      |.+..
T Consensus       152 l~~~~  156 (158)
T cd01879         152 IAELA  156 (158)
T ss_pred             HHHHh
Confidence            98764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK04213 GTP-binding protein; Provisional

Probab=99.91  E-value=7e-24  Score=155.95  Aligned_cols=155  Identities=24%  Similarity=0.272  Sum_probs=105.6

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCC-----------chhhcc
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-----------QERFRS   73 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~   73 (208)
                      .+...++|+++|.+|+|||||+++|.+..+.....++.+.+  ...+.+.    .+.+|||||           ++.++.
T Consensus         5 ~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~   78 (201)
T PRK04213          5 RPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKD   78 (201)
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec----ceEEEeCCccccccccCHHHHHHHHH
Confidence            33467899999999999999999999888765555554433  3333332    589999999           455665


Q ss_pred             chhhhhc----cCCEEEEEEeCCChhhHH----------hHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHH
Q 028466           74 LIPSYIR----DSSVAVIVYDVASRQSFL----------NTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEA  139 (208)
Q Consensus        74 ~~~~~~~----~~d~~i~v~d~~~~~s~~----------~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~  139 (208)
                      .+..++.    .++++++|+|.++...+.          ........+.   ..+.|+++|+||+|+.+..   .....+
T Consensus        79 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~  152 (201)
T PRK04213         79 EIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDE  152 (201)
T ss_pred             HHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHH
Confidence            5555543    457889999986432110          0011112222   2468999999999986433   234444


Q ss_pred             HHHHcCC---------eEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466          140 KARELNV---------MFIETSAKAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       140 ~~~~~~~---------~~~~~S~~~~~~v~~~~~~l~~~~~~  172 (208)
                      +...++.         .++++||++| |+++++++|.+.+.+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        153 IAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             HHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            5555554         4899999999 999999999998754

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.91  E-value=4.1e-23  Score=162.69  Aligned_cols=153  Identities=22%  Similarity=0.216  Sum_probs=112.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCc---------hhhccchhhhh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ---------ERFRSLIPSYI   79 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~~~   79 (208)
                      .++|+++|.+|+|||||+|+|++..+.....+..+.+.....+.+.+. ..+.+|||+|.         +.|...+ ..+
T Consensus       189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~  266 (351)
T TIGR03156       189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EEV  266 (351)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence            489999999999999999999988764444455556666666666433 47999999997         2233222 347


Q ss_pred             ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCH
Q 028466           80 RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNI  159 (208)
Q Consensus        80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v  159 (208)
                      .++|++++|+|++++.+.+....|...+......+.|+++|+||+|+.+...     .... ......++++||+++.|+
T Consensus       267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~-~~~~~~~i~iSAktg~GI  340 (351)
T TIGR03156       267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERL-EEGYPEAVFVSAKTGEGL  340 (351)
T ss_pred             HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHH-HhCCCCEEEEEccCCCCH
Confidence            8999999999999988777766665555544435689999999999964321     1111 122346899999999999


Q ss_pred             HHHHHHHHHH
Q 028466          160 KALFRKIAAA  169 (208)
Q Consensus       160 ~~~~~~l~~~  169 (208)
                      ++++++|.+.
T Consensus       341 ~eL~~~I~~~  350 (351)
T TIGR03156       341 DLLLEAIAER  350 (351)
T ss_pred             HHHHHHHHhh
Confidence            9999999765

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.91  E-value=5.9e-23  Score=160.47  Aligned_cols=159  Identities=16%  Similarity=0.121  Sum_probs=114.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh-------ccchhhhhccC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRDS   82 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~   82 (208)
                      ..|+|+|.+++|||||+++|+.........+..+.......+.+++ ...+.+||+||....       .....+.+..+
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            4689999999999999999997654322223334444444444543 247899999997421       22233345679


Q ss_pred             CEEEEEEeCCCh---hhHHhHHHHHHHHHhhcC--CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCC
Q 028466           83 SVAVIVYDVASR---QSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGF  157 (208)
Q Consensus        83 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  157 (208)
                      +++++|+|+++.   +.++.+..|...+..+..  .+.|+++|+||+|+.+... .....+.+...++..++++||++++
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~  315 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGE  315 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCc
Confidence            999999999976   567777777777765432  4689999999999965432 2334455555667889999999999


Q ss_pred             CHHHHHHHHHHHc
Q 028466          158 NIKALFRKIAAAL  170 (208)
Q Consensus       158 ~v~~~~~~l~~~~  170 (208)
                      |+++++++|.+.+
T Consensus       316 GI~eL~~~I~~~l  328 (329)
T TIGR02729       316 GLDELLYALAELL  328 (329)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK15494 era GTPase Era; Provisional

Probab=99.91  E-value=1.1e-22  Score=160.02  Aligned_cols=163  Identities=21%  Similarity=0.298  Sum_probs=113.3

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCCchhh-ccc-------hhh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-RSL-------IPS   77 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~-------~~~   77 (208)
                      .+.++|+++|.+|||||||+|+|++..+.. ...+..+.+.....+..++  .++.||||||.... ..+       ...
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            456799999999999999999999887742 1122233344444455555  46899999998432 221       123


Q ss_pred             hhccCCEEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC--CeEEEeecC
Q 028466           78 YIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN--VMFIETSAK  154 (208)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~  154 (208)
                      ++.++|++++|+|..+  ++.... .++..+..   .+.|.++|+||+|+...   ...++.+++...+  ..++++||+
T Consensus       128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk  199 (339)
T PRK15494        128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL  199 (339)
T ss_pred             HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence            4779999999999864  444443 34444432   23567788999998542   2445556655544  579999999


Q ss_pred             CCCCHHHHHHHHHHHcCCCccCCcc
Q 028466          155 AGFNIKALFRKIAAALPGMETLSST  179 (208)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~~~~~~~  179 (208)
                      +|.|+++++++|.+.+++.+-..+.
T Consensus       200 tg~gv~eL~~~L~~~l~~~~~~~~~  224 (339)
T PRK15494        200 SGKNIDGLLEYITSKAKISPWLYAE  224 (339)
T ss_pred             CccCHHHHHHHHHHhCCCCCCCCCC
Confidence            9999999999999999876554443

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.91  E-value=3e-23  Score=151.72  Aligned_cols=146  Identities=18%  Similarity=0.255  Sum_probs=101.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc--CCCCCCc------------cceeeeeeeEEEEEECCeEEEEEEEecCCchhhccch
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY--DKFDNTY------------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI   75 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   75 (208)
                      -+|+++|.+++|||||+++|+.  +.+...+            ..+.+.+.......+....+.+.+|||||++.|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4899999999999999999997  4443322            1223333444444444455789999999999999999


Q ss_pred             hhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC-cCHHHHHHHHHH-------cCCe
Q 028466           76 PSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ-VSIEEGEAKARE-------LNVM  147 (208)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~~~  147 (208)
                      ..+++++|++++|+|+++. .......++..+..   .+.|+++|+||+|+..... ....++..+...       .+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            9999999999999999863 22223333333332   3588999999999964322 113334444322       3678


Q ss_pred             EEEeecCCCCCH
Q 028466          148 FIETSAKAGFNI  159 (208)
Q Consensus       148 ~~~~S~~~~~~v  159 (208)
                      ++++|+++|.|+
T Consensus       159 iv~~Sa~~g~~~  170 (194)
T cd01891         159 VLYASAKNGWAS  170 (194)
T ss_pred             EEEeehhccccc
Confidence            999999999765

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.91  E-value=3.1e-23  Score=149.11  Aligned_cols=156  Identities=21%  Similarity=0.188  Sum_probs=108.5

Q ss_pred             EEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh----hccc---hhhhhccCCEEE
Q 028466           14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSL---IPSYIRDSSVAV   86 (208)
Q Consensus        14 vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~---~~~~~~~~d~~i   86 (208)
                      ++|++|+|||||+++|.+........+..+.+.....+.+.. ...+.+|||||...    ...+   ...+++.+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999998865222223333344444444441 25789999999742    1222   234578899999


Q ss_pred             EEEeCCCh------hhHHhHHHHHHHHHhhcC-------CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeec
Q 028466           87 IVYDVASR------QSFLNTTKWVEEVRTERG-------SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSA  153 (208)
Q Consensus        87 ~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~  153 (208)
                      +|+|++++      .++.....|...+.....       .+.|+++|+||+|+..................+..++++|+
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA  159 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence            99999987      467777777776654432       36899999999999654433332223344444678999999


Q ss_pred             CCCCCHHHHHHHHHHHc
Q 028466          154 KAGFNIKALFRKIAAAL  170 (208)
Q Consensus       154 ~~~~~v~~~~~~l~~~~  170 (208)
                      +++.|++++++++...+
T Consensus       160 ~~~~gl~~l~~~l~~~~  176 (176)
T cd01881         160 KTEEGLDELIRAIYELL  176 (176)
T ss_pred             hhhcCHHHHHHHHHhhC
Confidence            99999999999987653

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR00436 era GTP-binding protein Era

Probab=99.91  E-value=9.6e-23  Score=156.16  Aligned_cols=159  Identities=19%  Similarity=0.102  Sum_probs=108.2

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc--------chhhhhcc
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIRD   81 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~   81 (208)
                      +|+|+|.+|+|||||+|+|++.++.. ...+..+.+........++  .++.+|||||......        ....++..
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            68999999999999999999887642 2223333332222222222  4699999999754211        23456789


Q ss_pred             CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCCHH
Q 028466           82 SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFNIK  160 (208)
Q Consensus        82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~  160 (208)
                      +|++++|+|+++..+.+  ..++..+..   .+.|+++|+||+|+..... .......+....+. +++++||++|.|++
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~  153 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS  153 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence            99999999999765543  333333332   3589999999999863222 12233344443343 79999999999999


Q ss_pred             HHHHHHHHHcCCCccCC
Q 028466          161 ALFRKIAAALPGMETLS  177 (208)
Q Consensus       161 ~~~~~l~~~~~~~~~~~  177 (208)
                      +++++|.+.+++.+...
T Consensus       154 ~L~~~l~~~l~~~~~~~  170 (270)
T TIGR00436       154 FLAAFIEVHLPEGPFRY  170 (270)
T ss_pred             HHHHHHHHhCCCCCCCC
Confidence            99999999987765433

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01889 SelB_euk SelB subfamily

Probab=99.90  E-value=5.5e-23  Score=150.12  Aligned_cols=158  Identities=20%  Similarity=0.204  Sum_probs=105.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC-------CCCCCccceeeeeeeEEEEEEC------------CeEEEEEEEecCCchh
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD-------KFDNTYQATIGIDFLSKTMYLE------------DRTVRLQLWDTAGQER   70 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~   70 (208)
                      ++|+++|+.++|||||+++|+..       ....+..++.+++.....+.+.            ...+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999862       1122223334444433333333            2356899999999987


Q ss_pred             hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC--cCHHHHHHHHH------
Q 028466           71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ--VSIEEGEAKAR------  142 (208)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~------  142 (208)
                      +..........+|++++|+|+++.........+.  +...  .+.|+++|+||+|+.....  ....+.++.+.      
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            6555555667889999999998643222222221  2222  2478999999999864322  11222322221      


Q ss_pred             -HcCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          143 -ELNVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       143 -~~~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                       ..+++++++|+++++|+++++++|...+.
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence             13578999999999999999999999875

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.90  E-value=2.7e-22  Score=141.47  Aligned_cols=146  Identities=21%  Similarity=0.226  Sum_probs=108.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc--------hhhhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSYIR   80 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~   80 (208)
                      ++|+++|++|+|||||++++.+.... ....++.+.+.....+...+  ..+.+|||||...+...        ....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            68999999999999999999987652 22334444455555555554  57899999997654332        234677


Q ss_pred             cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466           81 DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK  160 (208)
Q Consensus        81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (208)
                      .+|++++|+|++++.+......+..      ....|+++|+||+|+.+....       .......+++++|++++.|++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            9999999999998766655443322      346899999999999754432       233445789999999999999


Q ss_pred             HHHHHHHHHc
Q 028466          161 ALFRKIAAAL  170 (208)
Q Consensus       161 ~~~~~l~~~~  170 (208)
                      +++++|.+.+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999998765

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=1.7e-22  Score=165.71  Aligned_cols=176  Identities=19%  Similarity=0.180  Sum_probs=119.2

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchh--------hccchhhhh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSYI   79 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~   79 (208)
                      ..+|+|+|.+|||||||+|+|++.... ....++.+.+.......+++  ..+.+|||||++.        +......++
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~  115 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAM  115 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence            368999999999999999999987643 34455666666666666666  4588999999762        334456678


Q ss_pred             ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCC
Q 028466           80 RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFN  158 (208)
Q Consensus        80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~  158 (208)
                      +.+|++|+|+|+++..+... ..+...+..   .+.|+++|+||+|+....   ......+  ..+. ..+++||++|.|
T Consensus       116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~g  186 (472)
T PRK03003        116 RTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGRG  186 (472)
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCCC
Confidence            99999999999997644432 233333332   468999999999985321   1111222  2332 457999999999


Q ss_pred             HHHHHHHHHHHcCCCccCCc-ccccccccccccCCCCC
Q 028466          159 IKALFRKIAAALPGMETLSS-TKQEDLVDVNLKSSNTN  195 (208)
Q Consensus       159 v~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  195 (208)
                      +++++++|.+.+.+...... ......+.+-+.+..++
T Consensus       187 i~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGK  224 (472)
T PRK03003        187 VGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGK  224 (472)
T ss_pred             cHHHHHHHHhhcccccccccccccceEEEEECCCCCCH
Confidence            99999999999866322111 12233455555555444

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.90  E-value=1.3e-22  Score=136.90  Aligned_cols=114  Identities=32%  Similarity=0.561  Sum_probs=87.2

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCC--CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFD--NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      ||+|+|++|||||||+++|.+..+.  ..+....+.++.............+.+||++|++.+...+..++..+|++|+|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999988876  12223333444444556666666799999999999888888889999999999


Q ss_pred             EeCCChhhHHhHHHH---HHHHHhhcCCCCeEEEEEeCCC
Q 028466           89 YDVASRQSFLNTTKW---VEEVRTERGSDVIIVLVGNKTD  125 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~~iivv~nK~D  125 (208)
                      ||++++++++.+.++   +..+... ..+.|++||+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence            999999999987555   4444433 35699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.90  E-value=6.5e-23  Score=138.17  Aligned_cols=171  Identities=24%  Similarity=0.507  Sum_probs=148.6

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .-.+||.++|.+..|||||+-.++++.+.+++..+.++.+..+++.+.+..+.+.|||.+|++++..+.+..-+++-+++
T Consensus        18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl   97 (205)
T KOG1673|consen   18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL   97 (205)
T ss_pred             ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence            45799999999999999999999999999888899999999999999999999999999999999999998899999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc-----CcCHHHHHHHHHHcCCeEEEeecCCCCCHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR-----QVSIEEGEAKARELNVMFIETSAKAGFNIKA  161 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~  161 (208)
                      |+||++.+.++..+.+||.+.+......+| |+|++|.|..-..     +.-..+++..++..++.++.+|+....|+++
T Consensus        98 FmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~K  176 (205)
T KOG1673|consen   98 FMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQK  176 (205)
T ss_pred             EEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHH
Confidence            999999999999999999999877766566 5679999974221     2223456777777899999999999999999


Q ss_pred             HHHHHHHHcCCCccCCc
Q 028466          162 LFRKIAAALPGMETLSS  178 (208)
Q Consensus       162 ~~~~l~~~~~~~~~~~~  178 (208)
                      +|..+...+..++-..+
T Consensus       177 IFK~vlAklFnL~~ti~  193 (205)
T KOG1673|consen  177 IFKIVLAKLFNLPWTIP  193 (205)
T ss_pred             HHHHHHHHHhCCceecc
Confidence            99999988876654443

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.89  E-value=4.3e-22  Score=165.66  Aligned_cols=154  Identities=20%  Similarity=0.220  Sum_probs=115.5

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+..+|+++|+.++|||||+++|.+..+.....++.+.+.....+.+++.. .+.|||||||+.|..++.+.+..+|++|
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            467899999999999999999999888876666666666666666665432 7899999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC---------CeEEEeecCCCC
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN---------VMFIETSAKAGF  157 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~S~~~~~  157 (208)
                      +|+|+++....+ ..+.+   ......++|+++++||+|+.+.   ...++...+..++         ..++++||++|.
T Consensus       164 LVVda~dgv~~q-T~e~i---~~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe  236 (587)
T TIGR00487       164 LVVAADDGVMPQ-TIEAI---SHAKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD  236 (587)
T ss_pred             EEEECCCCCCHh-HHHHH---HHHHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence            999998632111 11112   2222246899999999998542   2333444433332         469999999999


Q ss_pred             CHHHHHHHHHH
Q 028466          158 NIKALFRKIAA  168 (208)
Q Consensus       158 ~v~~~~~~l~~  168 (208)
                      |+++++++|..
T Consensus       237 GI~eLl~~I~~  247 (587)
T TIGR00487       237 GIDELLDMILL  247 (587)
T ss_pred             ChHHHHHhhhh
Confidence            99999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.89  E-value=4.9e-22  Score=160.78  Aligned_cols=152  Identities=21%  Similarity=0.233  Sum_probs=114.8

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCC-CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc--------hhhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY   78 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~   78 (208)
                      ..++|+++|.+|+|||||+|+|++... .....++.+.++....+.+++  ..+.+|||||+..+...        ...+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            468999999999999999999998754 223345666777777777876  56899999998654432        2356


Q ss_pred             hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466           79 IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN  158 (208)
Q Consensus        79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (208)
                      ++++|++++|+|++++.+++..  |+..+..   .+.|+++|+||+|+...      ....+...++.+++.+|+++ .|
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g  347 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK  347 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence            8899999999999987776654  5554432   36899999999998543      12344556677899999998 68


Q ss_pred             HHHHHHHHHHHcCCC
Q 028466          159 IKALFRKIAAALPGM  173 (208)
Q Consensus       159 v~~~~~~l~~~~~~~  173 (208)
                      ++++++.|.+.+.+.
T Consensus       348 I~~~~~~L~~~i~~~  362 (442)
T TIGR00450       348 IKALVDLLTQKINAF  362 (442)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999988888877543

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.89  E-value=2.4e-22  Score=163.38  Aligned_cols=149  Identities=25%  Similarity=0.279  Sum_probs=113.9

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc--------hhhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY   78 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~   78 (208)
                      ..++|+++|.+|+|||||+|+|++.... ....++.+.++....+.+++  ..+.+|||||...+...        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            3589999999999999999999987652 34455666677777777766  56899999998754432        2346


Q ss_pred             hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466           79 IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN  158 (208)
Q Consensus        79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (208)
                      +.++|++++|+|++++.+++....|..      ..+.|+++|+||+|+.+.....        ...+..++++|++++.|
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G  357 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG  357 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence            889999999999998876665433322      3468999999999996533221        23456899999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 028466          159 IKALFRKIAAALPG  172 (208)
Q Consensus       159 v~~~~~~l~~~~~~  172 (208)
                      +++++++|.+.+..
T Consensus       358 I~~L~~~L~~~l~~  371 (449)
T PRK05291        358 IDELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998854

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.89  E-value=4.5e-22  Score=144.59  Aligned_cols=155  Identities=25%  Similarity=0.268  Sum_probs=110.6

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCcc----------------ceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQ----------------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL   74 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   74 (208)
                      +|+|+|.+|+|||||+++|.+........                .+.+.+.........  ...+.+|||||+..+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence            58999999999999999998776654321                122223333333333  367999999999999888


Q ss_pred             hhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc--CHHHHHHHHHH---------
Q 028466           75 IPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV--SIEEGEAKARE---------  143 (208)
Q Consensus        75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~---------  143 (208)
                      +..+++.+|++++|+|++++.... ...++..+..   .+.|+++|+||+|+......  ...++.+....         
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQ-TREHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE  154 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence            889999999999999998754332 2233333332   46899999999999642221  12233333332         


Q ss_pred             -----cCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          144 -----LNVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       144 -----~~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                           ...+++++|++++.|+++++++|.+.++
T Consensus       155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             hcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence                 2468999999999999999999999874

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=1.3e-22  Score=166.49  Aligned_cols=169  Identities=23%  Similarity=0.236  Sum_probs=119.4

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCch----------hhccch-
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRSLI-   75 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~-   75 (208)
                      ..++|+|+|.+|+|||||+|+|++.... ....++.+.+.....+..++.  .+.+|||||..          .+.... 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence            4589999999999999999999988652 344566666666666777664  57899999953          232222 


Q ss_pred             hhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC--HHHHHHHHH-HcCCeEEEee
Q 028466           76 PSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS--IEEGEAKAR-ELNVMFIETS  152 (208)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--~~~~~~~~~-~~~~~~~~~S  152 (208)
                      ..+++.+|++|+|+|++++.++.... ++..+.   ..+.|+++|+||+|+.+.....  ..++..... ...++++++|
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~---~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S  363 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVI---EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS  363 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHH---HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence            34578999999999999876666543 333333   2468999999999996432110  111222112 2246899999


Q ss_pred             cCCCCCHHHHHHHHHHHcCCCccCCccccc
Q 028466          153 AKAGFNIKALFRKIAAALPGMETLSSTKQE  182 (208)
Q Consensus       153 ~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~  182 (208)
                      |++|.|++++|+.+.+.+.....+-++.+.
T Consensus       364 Ak~g~gv~~lf~~i~~~~~~~~~~i~t~~l  393 (472)
T PRK03003        364 AKTGRAVDKLVPALETALESWDTRIPTGRL  393 (472)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhcccCCHHHH
Confidence            999999999999999988766666555443

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.89  E-value=3.1e-22  Score=141.53  Aligned_cols=147  Identities=18%  Similarity=0.217  Sum_probs=103.2

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCch----hhccchhhhhccCCEEE
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----RFRSLIPSYIRDSSVAV   86 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i   86 (208)
                      +|+++|.+|+|||||++++.+.... . ..+.+       +.+...    .+|||||..    .+.......+..+|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~-~-~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL-A-RKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc-C-ccceE-------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            7999999999999999998754321 1 12222       122221    269999972    22222233478999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC--eEEEeecCCCCCHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV--MFIETSAKAGFNIKALFR  164 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~S~~~~~~v~~~~~  164 (208)
                      +|+|+++.+++..  .|+..+    ..+.|+++++||.|+..   ........++...+.  +++++|+++++|++++|+
T Consensus        70 ~v~d~~~~~s~~~--~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~  140 (158)
T PRK15467         70 YVHGANDPESRLP--AGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD  140 (158)
T ss_pred             EEEeCCCcccccC--HHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence            9999998765532  333332    23578999999999854   235566777777774  899999999999999999


Q ss_pred             HHHHHcCCCccCCcc
Q 028466          165 KIAAALPGMETLSST  179 (208)
Q Consensus       165 ~l~~~~~~~~~~~~~  179 (208)
                      .|.+.+.+......+
T Consensus       141 ~l~~~~~~~~~~~~~  155 (158)
T PRK15467        141 YLASLTKQEEAGEKT  155 (158)
T ss_pred             HHHHhchhhhccccc
Confidence            999998766555443

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.89  E-value=2.7e-23  Score=138.73  Aligned_cols=153  Identities=24%  Similarity=0.368  Sum_probs=126.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      ++.+.++|..++|||||+|.+..+.+.+...|+.+....    ++..+.+.+.+||.||++.|+.+|.+|.+.++++++|
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            678999999999999999999999998888888875443    3445567899999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc--------CCeEEEeecCCCCCH
Q 028466           89 YDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL--------NVMFIETSAKAGFNI  159 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~--------~~~~~~~S~~~~~~v  159 (208)
                      +|+.+++.+...+..+..+..... .+.|++|++||.|+.++-.  .   ..+..+.        .+-.|.+|+++..|+
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~--~---~~li~rmgL~sitdREvcC~siScke~~Ni  170 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS--K---IALIERMGLSSITDREVCCFSISCKEKVNI  170 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc--H---HHHHHHhCccccccceEEEEEEEEcCCccH
Confidence            999999988887777777665433 6799999999999976422  2   2222222        245799999999999


Q ss_pred             HHHHHHHHHHc
Q 028466          160 KALFRKIAAAL  170 (208)
Q Consensus       160 ~~~~~~l~~~~  170 (208)
                      +-+.+||.+.-
T Consensus       171 d~~~~Wli~hs  181 (186)
T KOG0075|consen  171 DITLDWLIEHS  181 (186)
T ss_pred             HHHHHHHHHHh
Confidence            99999999875

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.89  E-value=5.8e-22  Score=145.81  Aligned_cols=161  Identities=18%  Similarity=0.187  Sum_probs=106.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCC---CCCccceeeeeeeEEEEEEC---------------------------C----
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLSKTMYLE---------------------------D----   55 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~----   55 (208)
                      ++|+++|+.|+|||||++.+.+-..   ..+.....++........+.                           +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4799999999999999999975421   22222222222221111111                           0    


Q ss_pred             eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc--C
Q 028466           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV--S  133 (208)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~  133 (208)
                      ....+.||||||++.|.......+..+|++++|+|++++.........+..+...  ...|+++|+||+|+......  .
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence            1157999999999999888888889999999999998632111222222223222  12578899999999643211  1


Q ss_pred             HHHHHHHHHHc---CCeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466          134 IEEGEAKAREL---NVMFIETSAKAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       134 ~~~~~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~~~~  172 (208)
                      ..+++.++..+   +++++++||++++|+++++++|.+.+++
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            23344444432   5689999999999999999999998865

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd01894 EngA1 EngA1 subfamily

Probab=99.89  E-value=8.4e-22  Score=138.97  Aligned_cols=147  Identities=22%  Similarity=0.203  Sum_probs=101.7

Q ss_pred             EEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc--------chhhhhccCC
Q 028466           13 VFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIRDSS   83 (208)
Q Consensus        13 ~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d   83 (208)
                      +++|.+|+|||||+++|.+.... ....+..+.+........++  ..+.+|||||+..+..        .....++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            47999999999999999977531 12233334444444455554  5799999999887543        3445678999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCCHHHH
Q 028466           84 VAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFNIKAL  162 (208)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~  162 (208)
                      ++++|+|+.++.+.... .....+. .  .+.|+++|+||+|+.+....     .......+. .++++|++++.|++++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~-~--~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLR-K--SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHH-h--cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence            99999999865333321 1222222 2  25899999999998654322     223334555 7899999999999999


Q ss_pred             HHHHHHHc
Q 028466          163 FRKIAAAL  170 (208)
Q Consensus       163 ~~~l~~~~  170 (208)
                      +++|.+.+
T Consensus       150 ~~~l~~~~  157 (157)
T cd01894         150 LDAILELL  157 (157)
T ss_pred             HHHHHhhC
Confidence            99998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.89  E-value=1.3e-21  Score=163.50  Aligned_cols=158  Identities=19%  Similarity=0.229  Sum_probs=114.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCC-------CCCCcc------ceeeeeeeE--EEEEE---CCeEEEEEEEecCCchhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDK-------FDNTYQ------ATIGIDFLS--KTMYL---EDRTVRLQLWDTAGQERF   71 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~-------~~~~~~------~~~~~~~~~--~~~~~---~~~~~~~~i~D~~G~~~~   71 (208)
                      -+|+++|+.++|||||+++|+...       +...+.      +..++++..  ..+.+   ++..+.++||||||+.+|
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            589999999999999999998542       111111      122333333  33333   456689999999999999


Q ss_pred             ccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC---eE
Q 028466           72 RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV---MF  148 (208)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~  148 (208)
                      ...+..+++.+|++|+|+|+++..+......|...+.    .+.|+++|+||+|+.....  .....++...++.   .+
T Consensus        84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~~--~~~~~el~~~lg~~~~~v  157 (595)
T TIGR01393        84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSADP--ERVKKEIEEVIGLDASEA  157 (595)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccCH--HHHHHHHHHHhCCCcceE
Confidence            9999999999999999999998655555555544332    3578999999999854321  2222344444554   48


Q ss_pred             EEeecCCCCCHHHHHHHHHHHcCCC
Q 028466          149 IETSAKAGFNIKALFRKIAAALPGM  173 (208)
Q Consensus       149 ~~~S~~~~~~v~~~~~~l~~~~~~~  173 (208)
                      +++||++|.|+++++++|.+.++..
T Consensus       158 i~vSAktG~GI~~Lle~I~~~lp~p  182 (595)
T TIGR01393       158 ILASAKTGIGIEEILEAIVKRVPPP  182 (595)
T ss_pred             EEeeccCCCCHHHHHHHHHHhCCCC
Confidence            9999999999999999999988654

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=2.6e-21  Score=154.98  Aligned_cols=160  Identities=19%  Similarity=0.142  Sum_probs=114.7

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh----hccc---hhhhhccCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSL---IPSYIRDSS   83 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~---~~~~~~~~d   83 (208)
                      .|+|+|.+|+|||||+++|++........+..+.......+.++. ...+.+||+||...    ...+   ....+..++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~  238 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR  238 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence            799999999999999999997764322234444444444444441 24799999999642    1122   233456699


Q ss_pred             EEEEEEeCCCh---hhHHhHHHHHHHHHhhcC--CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466           84 VAVIVYDVASR---QSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN  158 (208)
Q Consensus        84 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (208)
                      ++|+|+|+++.   +.++....|...+..+..  .+.|++||+||+|+...    ...++.+...++.+++++||++++|
T Consensus       239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tgeG  314 (424)
T PRK12297        239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQG  314 (424)
T ss_pred             EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCCC
Confidence            99999999864   566666777777665432  46899999999998422    3344556666667899999999999


Q ss_pred             HHHHHHHHHHHcCCCcc
Q 028466          159 IKALFRKIAAALPGMET  175 (208)
Q Consensus       159 v~~~~~~l~~~~~~~~~  175 (208)
                      +++++++|.+.+...+.
T Consensus       315 I~eL~~~L~~~l~~~~~  331 (424)
T PRK12297        315 LDELLYAVAELLEETPE  331 (424)
T ss_pred             HHHHHHHHHHHHHhCcc
Confidence            99999999998866543

>PRK11058 GTPase HflX; Provisional

Probab=99.88  E-value=9.8e-22  Score=158.24  Aligned_cols=156  Identities=21%  Similarity=0.215  Sum_probs=111.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh--ccch------hhhhcc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--RSLI------PSYIRD   81 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~------~~~~~~   81 (208)
                      .+|+|+|.+|+|||||+|+|++........++.+.+.....+.+.+.. .+.+|||+|....  ...+      ...++.
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~-~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG-ETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC-eEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            589999999999999999999877654444555666665566565432 6889999997321  1112      234689


Q ss_pred             CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCe-EEEeecCCCCCHH
Q 028466           82 SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIK  160 (208)
Q Consensus        82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~v~  160 (208)
                      +|++|+|+|++++.+++.+..|...+......+.|+++|+||+|+.+...   ....  ....+.+ ++.+||++|.|++
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId  351 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP  351 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence            99999999999987777765554444443335689999999999864311   1111  1123444 5889999999999


Q ss_pred             HHHHHHHHHcC
Q 028466          161 ALFRKIAAALP  171 (208)
Q Consensus       161 ~~~~~l~~~~~  171 (208)
                      +++++|.+.+.
T Consensus       352 eL~e~I~~~l~  362 (426)
T PRK11058        352 LLFQALTERLS  362 (426)
T ss_pred             HHHHHHHHHhh
Confidence            99999999874

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=2e-21  Score=157.60  Aligned_cols=164  Identities=18%  Similarity=0.101  Sum_probs=114.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh-------hccchhhhhccC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRDS   82 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~   82 (208)
                      ..|+|||.+|+|||||+++|++........+..|+......+.+.+  ..+.+||+||...       ......+.+..+
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera  237 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC  237 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            5799999999999999999997665433345555555555565655  5799999999532       111234456789


Q ss_pred             CEEEEEEeCCCh----hhHHhHHHHHHHHHhhc-----------CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCe
Q 028466           83 SVAVIVYDVASR----QSFLNTTKWVEEVRTER-----------GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVM  147 (208)
Q Consensus        83 d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~-----------~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (208)
                      |++|+|+|+++.    +.+..+..+...+..+.           ..+.|+|||+||+|+.+..+. ...........+++
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~~  316 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGWP  316 (500)
T ss_pred             CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCCe
Confidence            999999999753    23444444444443322           236899999999999654332 22333344455789


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHcCCCccC
Q 028466          148 FIETSAKAGFNIKALFRKIAAALPGMETL  176 (208)
Q Consensus       148 ~~~~S~~~~~~v~~~~~~l~~~~~~~~~~  176 (208)
                      ++++|+++++|+++++.+|.+.+...+..
T Consensus       317 Vf~ISA~tgeGLdEL~~~L~ell~~~r~~  345 (500)
T PRK12296        317 VFEVSAASREGLRELSFALAELVEEARAA  345 (500)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhhhcc
Confidence            99999999999999999999998776543

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.88  E-value=2.1e-21  Score=142.10  Aligned_cols=160  Identities=23%  Similarity=0.206  Sum_probs=105.7

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCc----------hhhccch
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSLI   75 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~   75 (208)
                      ....++|+++|.+|+|||||+++|++..+.....++.+.+........   ...+.+|||||.          +.+....
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~   97 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI   97 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence            345689999999999999999999987654343444333222222222   257999999994          3344444


Q ss_pred             hhhhccC---CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC--HHHHHHHHHHcCCeEEE
Q 028466           76 PSYIRDS---SVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS--IEEGEAKARELNVMFIE  150 (208)
Q Consensus        76 ~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~  150 (208)
                      ..+++..   +++++|+|++++.....  .++..+...  .+.|+++++||.|+.+..+..  ..++..........+++
T Consensus        98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~  173 (196)
T PRK00454         98 EEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVIL  173 (196)
T ss_pred             HHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEE
Confidence            5555544   67888999876433222  111122222  358899999999986543221  22344444444678999


Q ss_pred             eecCCCCCHHHHHHHHHHHcCC
Q 028466          151 TSAKAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       151 ~S~~~~~~v~~~~~~l~~~~~~  172 (208)
                      +|++++.|++++++.|.+.+.+
T Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        174 FSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             EEcCCCCCHHHHHHHHHHHhcC
Confidence            9999999999999999988753

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.88  E-value=1.4e-21  Score=153.81  Aligned_cols=177  Identities=18%  Similarity=0.137  Sum_probs=130.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh---------ccchhhhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPSYI   79 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~   79 (208)
                      ..|+|+|.||||||||+|+|++.... .+..|+.|.|..+....+.+.  .+.++||+|.+..         .......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            68999999999999999999988774 456788888888888888874  5999999996632         22445568


Q ss_pred             ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCH
Q 028466           80 RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNI  159 (208)
Q Consensus        80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v  159 (208)
                      ..||++|||+|...  ......+.+..+..  ..++|+++|+||+|-...    ....-++........+.+||..|.|+
T Consensus        82 ~eADvilfvVD~~~--Git~~D~~ia~~Lr--~~~kpviLvvNK~D~~~~----e~~~~efyslG~g~~~~ISA~Hg~Gi  153 (444)
T COG1160          82 EEADVILFVVDGRE--GITPADEEIAKILR--RSKKPVILVVNKIDNLKA----EELAYEFYSLGFGEPVPISAEHGRGI  153 (444)
T ss_pred             HhCCEEEEEEeCCC--CCCHHHHHHHHHHH--hcCCCEEEEEEcccCchh----hhhHHHHHhcCCCCceEeehhhccCH
Confidence            89999999999874  23333333333333  235999999999997421    22223333333358999999999999


Q ss_pred             HHHHHHHHHHcCCCccCCccc---ccccccccccCCCCCCC
Q 028466          160 KALFRKIAAALPGMETLSSTK---QEDLVDVNLKSSNTNTS  197 (208)
Q Consensus       160 ~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  197 (208)
                      .++++.+.+.++ ........   +.-++++-++++.+++|
T Consensus       154 ~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSs  193 (444)
T COG1160         154 GDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSS  193 (444)
T ss_pred             HHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchH
Confidence            999999999986 33332222   45788888998888754

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.88  E-value=2.1e-21  Score=162.16  Aligned_cols=157  Identities=21%  Similarity=0.229  Sum_probs=120.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc---CCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY---DKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      +.|+++|+.++|||||+++|++   ..+++++.++++++.....+..++  ..+.+||+||++.|......++.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            4689999999999999999996   344556667778787777777766  68999999999999998888999999999


Q ss_pred             EEEeCCC---hhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccCc--CHHHHHHHHHHc----CCeEEEeecCCC
Q 028466           87 IVYDVAS---RQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQV--SIEEGEAKAREL----NVMFIETSAKAG  156 (208)
Q Consensus        87 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~S~~~~  156 (208)
                      +|+|+++   +++.+.    +..+. .  .++| +++|+||+|+.+....  ...+++.++..+    +++++++|+++|
T Consensus        79 LVVDa~~G~~~qT~eh----l~il~-~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG  151 (581)
T TIGR00475        79 LVVDADEGVMTQTGEH----LAVLD-L--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG  151 (581)
T ss_pred             EEEECCCCCcHHHHHH----HHHHH-H--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence            9999987   333332    22222 2  2466 9999999999654322  133445555544    478999999999


Q ss_pred             CCHHHHHHHHHHHcCCCcc
Q 028466          157 FNIKALFRKIAAALPGMET  175 (208)
Q Consensus       157 ~~v~~~~~~l~~~~~~~~~  175 (208)
                      .|++++++.|.+.+.....
T Consensus       152 ~GI~eL~~~L~~l~~~~~~  170 (581)
T TIGR00475       152 QGIGELKKELKNLLESLDI  170 (581)
T ss_pred             CCchhHHHHHHHHHHhCCC
Confidence            9999999999888766544

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=2e-21  Score=158.52  Aligned_cols=173  Identities=20%  Similarity=0.173  Sum_probs=116.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchh--------hccchhhhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSYIR   80 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~   80 (208)
                      ++|+|+|.+|||||||+|+|.+.... ....+..+.+.......+++  ..+.+|||||+..        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999987642 23345556666666666766  6799999999876        2333456788


Q ss_pred             cCCEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCC
Q 028466           81 DSSVAVIVYDVASRQSFL--NTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGF  157 (208)
Q Consensus        81 ~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~  157 (208)
                      .+|++|+|+|+.++.+..  .+..|+.    .  .+.|+++|+||+|..+.    ...... +..++. .++++||.++.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~----~--~~~piilv~NK~D~~~~----~~~~~~-~~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILR----K--SNKPVILVVNKVDGPDE----EADAYE-FYSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHH----H--cCCcEEEEEECccCccc----hhhHHH-HHhcCCCCCEEEEeeCCC
Confidence            999999999998642222  2333332    2  25899999999997431    112222 234555 58999999999


Q ss_pred             CHHHHHHHHHHHcCCCccCCcccccccccccccCCCCC
Q 028466          158 NIKALFRKIAAALPGMETLSSTKQEDLVDVNLKSSNTN  195 (208)
Q Consensus       158 ~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (208)
                      |++++++.|................-.+.+-+.+..++
T Consensus       149 gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GK  186 (435)
T PRK00093        149 GIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGK  186 (435)
T ss_pred             CHHHHHHHHHhhCCccccccccccceEEEEECCCCCCH
Confidence            99999999998543322211122233455555555444

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.88  E-value=2.9e-21  Score=164.39  Aligned_cols=154  Identities=18%  Similarity=0.211  Sum_probs=114.5

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+...|+|+|+.++|||||+++|....+.....++++.+.....+.+++  ..++||||||++.|..++.+++..+|++|
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            5678999999999999999999998877665556666666555666655  57999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHH-------HHHcC--CeEEEeecCCCC
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAK-------ARELN--VMFIETSAKAGF  157 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~S~~~~~  157 (208)
                      +|+|+++.-......    .+......++|+||++||+|+....   ..++...       ...++  ++++++||++|.
T Consensus       366 LVVdAddGv~~qT~e----~i~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~  438 (787)
T PRK05306        366 LVVAADDGVMPQTIE----AINHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGE  438 (787)
T ss_pred             EEEECCCCCCHhHHH----HHHHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCC
Confidence            999998631111111    1222223468999999999995431   2222221       22223  689999999999


Q ss_pred             CHHHHHHHHHHH
Q 028466          158 NIKALFRKIAAA  169 (208)
Q Consensus       158 ~v~~~~~~l~~~  169 (208)
                      |+++++++|...
T Consensus       439 GI~eLle~I~~~  450 (787)
T PRK05306        439 GIDELLEAILLQ  450 (787)
T ss_pred             CchHHHHhhhhh
Confidence            999999999864

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=4.2e-21  Score=152.97  Aligned_cols=163  Identities=18%  Similarity=0.132  Sum_probs=115.8

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh-------ccchhhhhccCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRDSS   83 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~d   83 (208)
                      .|+|||.+|+|||||+|+|++.+......+..|.......+.+... ..+.++||||...-       .......+..+|
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            6999999999999999999977654344455555555555555432 35999999996531       122334578899


Q ss_pred             EEEEEEeCC---ChhhHHhHHHHHHHHHhhcC--CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC--CeEEEeecCCC
Q 028466           84 VAVIVYDVA---SRQSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN--VMFIETSAKAG  156 (208)
Q Consensus        84 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~  156 (208)
                      ++++|+|++   +.+.++....|+..+.....  .+.|+++|+||+|+....+. ...+..+....+  ..++.+||+++
T Consensus       240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg  318 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASG  318 (390)
T ss_pred             EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence            999999998   44566666677776665432  35899999999998643322 233344444433  47899999999


Q ss_pred             CCHHHHHHHHHHHcCCCcc
Q 028466          157 FNIKALFRKIAAALPGMET  175 (208)
Q Consensus       157 ~~v~~~~~~l~~~~~~~~~  175 (208)
                      .|++++++.|.+.+++.+.
T Consensus       319 ~GIdeLl~~I~~~L~~~~~  337 (390)
T PRK12298        319 LGVKELCWDLMTFIEENPR  337 (390)
T ss_pred             cCHHHHHHHHHHHhhhCcc
Confidence            9999999999999876544

>cd01895 EngA2 EngA2 subfamily

Probab=99.88  E-value=6.3e-21  Score=136.52  Aligned_cols=155  Identities=22%  Similarity=0.262  Sum_probs=104.9

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-----------chh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----------LIP   76 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~   76 (208)
                      .++|+++|.+|+|||||+++|++.... ....+..+.......+..++  ..+.+|||||......           ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            489999999999999999999987642 22233444444444455554  3588999999654311           112


Q ss_pred             hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-Hc----CCeEEEe
Q 028466           77 SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-EL----NVMFIET  151 (208)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~~----~~~~~~~  151 (208)
                      ..+..+|++++|+|++++.+.... .++..+..   .+.|+++++||+|+............+... .+    ..+++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            346789999999999987554432 22222222   358999999999986543222333233332 22    3689999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q 028466          152 SAKAGFNIKALFRKIAAA  169 (208)
Q Consensus       152 S~~~~~~v~~~~~~l~~~  169 (208)
                      |++++.|++++++.+.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999998865

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.88  E-value=3.3e-21  Score=162.75  Aligned_cols=157  Identities=18%  Similarity=0.227  Sum_probs=113.8

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEE--EEEECCeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSK--TMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (208)
                      .+..+|+|+|+.++|||||+++|....+.....++.+.+....  .+..++....++||||||++.|..++.+++..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            3668999999999999999999998877655555554443333  33333445789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-------HcC--CeEEEeecCC
Q 028466           85 AVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-------ELN--VMFIETSAKA  155 (208)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-------~~~--~~~~~~S~~~  155 (208)
                      +|+|+|+++.-....... +..+   ...+.|+||++||+|+....   ..++...+.       .++  ++++++||++
T Consensus       322 aILVVDA~dGv~~QT~E~-I~~~---k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt  394 (742)
T CHL00189        322 AILIIAADDGVKPQTIEA-INYI---QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQ  394 (742)
T ss_pred             EEEEEECcCCCChhhHHH-HHHH---HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence            999999986322211111 1222   23468999999999986432   223322222       223  6899999999


Q ss_pred             CCCHHHHHHHHHHHc
Q 028466          156 GFNIKALFRKIAAAL  170 (208)
Q Consensus       156 ~~~v~~~~~~l~~~~  170 (208)
                      |.|+++++++|....
T Consensus       395 G~GIdeLle~I~~l~  409 (742)
T CHL00189        395 GTNIDKLLETILLLA  409 (742)
T ss_pred             CCCHHHHHHhhhhhh
Confidence            999999999998764

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=6e-21  Score=126.57  Aligned_cols=158  Identities=25%  Similarity=0.393  Sum_probs=126.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      -++++|+.+|..++||||++..|..+... ...||.+  +...++.+.+  ..+++||.+|++..+..|..|+....++|
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvG--FnvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglI   89 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI   89 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCCc-ccccccc--eeEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEE
Confidence            46899999999999999999999876643 3356655  4555555655  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCCCCHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAGFNIK  160 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v~  160 (208)
                      ||+|..+.+.+++.+..+..+.++.. .+.|++|.+||.|+..+..  ..++.....     ....-+.++++.+++|+.
T Consensus        90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~--pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~  167 (180)
T KOG0071|consen   90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK--PQEIQDKLELERIRDRNWYVQPSCALSGDGLK  167 (180)
T ss_pred             EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC--HHHHHHHhccccccCCccEeeccccccchhHH
Confidence            99999988888888877777765544 6789999999999976543  334433332     223457899999999999


Q ss_pred             HHHHHHHHHcC
Q 028466          161 ALFRKIAAALP  171 (208)
Q Consensus       161 ~~~~~l~~~~~  171 (208)
                      +-|.||...+.
T Consensus       168 eglswlsnn~~  178 (180)
T KOG0071|consen  168 EGLSWLSNNLK  178 (180)
T ss_pred             HHHHHHHhhcc
Confidence            99999988764

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.87  E-value=1.8e-21  Score=141.69  Aligned_cols=160  Identities=24%  Similarity=0.319  Sum_probs=108.7

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCC------------------CCccceeeeeeeEEEEEECCeEEEEEEEecCCch
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD------------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   69 (208)
                      +.++|+++|+.++|||||+++|+.....                  .+.....+++.....+........++++||||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            3578999999999999999999844321                  1112233344444444411333689999999999


Q ss_pred             hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC-cCHHHHH-HHHHHc---
Q 028466           70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ-VSIEEGE-AKAREL---  144 (208)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~-~~~~~~---  144 (208)
                      .|.......+..+|++|+|+|+.++-. ....+.+..+..   .+.|+++|+||+|+...+- ....++. .+.+.+   
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~-~~~~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~  157 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQ-PQTEEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN  157 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBST-HHHHHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ceeecccceecccccceeeeecccccc-cccccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence            999999999999999999999985422 122333333333   3588999999999972211 1112222 232333   


Q ss_pred             ---CCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          145 ---NVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       145 ---~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                         .++++++|+++|.|++++++.|.+.++
T Consensus       158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  158 GEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             TTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             ccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence               257999999999999999999999875

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.87  E-value=6.9e-21  Score=155.16  Aligned_cols=165  Identities=21%  Similarity=0.198  Sum_probs=113.9

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc-----------h
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-----------I   75 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~   75 (208)
                      ..++|+++|.+|+|||||+|+|++.... ....++.+.+.....+..++  ..+.+|||||+..+...           .
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHHH
Confidence            4589999999999999999999987642 23345555555555555655  36899999997544322           1


Q ss_pred             hhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-----cCCeEEE
Q 028466           76 PSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-----LNVMFIE  150 (208)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~  150 (208)
                      ..+++.+|++|+|+|++++.+..... ++..+..   .+.|+++|+||+|+.+. .....+.......     .++++++
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi~  323 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIVF  323 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceEE
Confidence            34678999999999999765544432 2222222   36899999999999621 1112222222222     1468999


Q ss_pred             eecCCCCCHHHHHHHHHHHcCCCccCCcc
Q 028466          151 TSAKAGFNIKALFRKIAAALPGMETLSST  179 (208)
Q Consensus       151 ~S~~~~~~v~~~~~~l~~~~~~~~~~~~~  179 (208)
                      +||++|.|++++|+++.+.+.......++
T Consensus       324 ~SA~~g~~v~~l~~~i~~~~~~~~~~i~t  352 (429)
T TIGR03594       324 ISALTGQGVDKLLDAIDEVYENANRRIST  352 (429)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHhcCcCCH
Confidence            99999999999999999887655444433

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00089 era GTPase Era; Reviewed

Probab=99.87  E-value=9.8e-21  Score=146.82  Aligned_cols=163  Identities=18%  Similarity=0.251  Sum_probs=108.5

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCc-cceeeeeeeEEEEEECCeEEEEEEEecCCchhhc--------cchhh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR--------SLIPS   77 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~   77 (208)
                      ++.-.|+|+|.+|+|||||+|+|++....... .+..+..........+  ..++.+|||||.....        .....
T Consensus         3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~   80 (292)
T PRK00089          3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWS   80 (292)
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHH
Confidence            35567999999999999999999988764322 2222222222222222  2689999999965432        23344


Q ss_pred             hhccCCEEEEEEeCCChhhHHhHHHHH-HHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC-CeEEEeecCC
Q 028466           78 YIRDSSVAVIVYDVASRQSFLNTTKWV-EEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN-VMFIETSAKA  155 (208)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~  155 (208)
                      .+..+|++++|+|++++  +.....++ ..+.   ..+.|+++|+||+|+.............+....+ ..++++|+++
T Consensus        81 ~~~~~D~il~vvd~~~~--~~~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~  155 (292)
T PRK00089         81 SLKDVDLVLFVVDADEK--IGPGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALK  155 (292)
T ss_pred             HHhcCCEEEEEEeCCCC--CChhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCC
Confidence            67899999999999872  22222222 2222   2358999999999996332222334444444333 6899999999


Q ss_pred             CCCHHHHHHHHHHHcCCCccC
Q 028466          156 GFNIKALFRKIAAALPGMETL  176 (208)
Q Consensus       156 ~~~v~~~~~~l~~~~~~~~~~  176 (208)
                      +.|+++++++|.+.+++.+..
T Consensus       156 ~~gv~~L~~~L~~~l~~~~~~  176 (292)
T PRK00089        156 GDNVDELLDVIAKYLPEGPPY  176 (292)
T ss_pred             CCCHHHHHHHHHHhCCCCCCC
Confidence            999999999999998765543

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.87  E-value=1.5e-20  Score=138.21  Aligned_cols=117  Identities=20%  Similarity=0.366  Sum_probs=88.5

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccC-CEEEEEE
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS-SVAVIVY   89 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~i~v~   89 (208)
                      +|+++|++|+|||+|+++|..+.+...+.++ +...........+....+.+||+||+..++..+..+++.+ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6899999999999999999998876654433 2222222222113346799999999999999888899998 9999999


Q ss_pred             eCCCh-hhHHhHHHHHHHHHhh---cCCCCeEEEEEeCCCCcC
Q 028466           90 DVASR-QSFLNTTKWVEEVRTE---RGSDVIIVLVGNKTDLVD  128 (208)
Q Consensus        90 d~~~~-~s~~~~~~~~~~~~~~---~~~~~~iivv~nK~D~~~  128 (208)
                      |+.+. .++.....|+..+...   .....|+++++||.|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            99987 6777766666555432   225799999999999854

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>COG1159 Era GTPase [General function prediction only]

Probab=99.87  E-value=5.3e-21  Score=143.10  Aligned_cols=168  Identities=18%  Similarity=0.228  Sum_probs=115.9

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCcccee-eeeeeEEEEEECCeEEEEEEEecCCchhhcc--------chh
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI-GIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIP   76 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~   76 (208)
                      .++---|+++|.||+|||||+|++++.+..-...... |.......++.+  ..++.|+||||...-.+        ...
T Consensus         3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~   80 (298)
T COG1159           3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAAR   80 (298)
T ss_pred             CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence            4566789999999999999999999998854333333 333333333333  36899999999554333        334


Q ss_pred             hhhccCCEEEEEEeCCChhhHHhHHHHH-HHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc--CCeEEEeec
Q 028466           77 SYIRDSSVAVIVYDVASRQSFLNTTKWV-EEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL--NVMFIETSA  153 (208)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~S~  153 (208)
                      ..+..+|+++||+|+.++  +..-.+++ +.+..   .+.|+++++||+|........ ....+.....  +..++++||
T Consensus        81 ~sl~dvDlilfvvd~~~~--~~~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l-~~~~~~~~~~~~f~~ivpiSA  154 (298)
T COG1159          81 SALKDVDLILFVVDADEG--WGPGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVL-LKLIAFLKKLLPFKEIVPISA  154 (298)
T ss_pred             HHhccCcEEEEEEecccc--CCccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHH-HHHHHHHHhhCCcceEEEeec
Confidence            457899999999999853  32233333 33332   357999999999987654421 2333333322  358999999


Q ss_pred             CCCCCHHHHHHHHHHHcCCCccCCcccc
Q 028466          154 KAGFNIKALFRKIAAALPGMETLSSTKQ  181 (208)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~~~~~~~~~  181 (208)
                      +.+.|++.+.+.+...+++.+...+...
T Consensus       155 ~~g~n~~~L~~~i~~~Lpeg~~~yp~d~  182 (298)
T COG1159         155 LKGDNVDTLLEIIKEYLPEGPWYYPEDQ  182 (298)
T ss_pred             cccCCHHHHHHHHHHhCCCCCCcCChhh
Confidence            9999999999999999988876665543

>cd04163 Era Era subfamily

Probab=99.87  E-value=1.4e-20  Score=133.78  Aligned_cols=156  Identities=19%  Similarity=0.204  Sum_probs=102.7

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCcc-ceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc--------chhhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSY   78 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~   78 (208)
                      ...+|+++|++|+|||||++++.+........ +..+.......  .......+.+|||||......        .....
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   79 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI--YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSA   79 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE--EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHH
Confidence            45899999999999999999999876532221 11111111111  222235799999999654322        33445


Q ss_pred             hccCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc-CCeEEEeecCCC
Q 028466           79 IRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL-NVMFIETSAKAG  156 (208)
Q Consensus        79 ~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~  156 (208)
                      +..+|++++|+|++++  +... ..+...+..   .+.|+++|+||.|+....+............. ..+++++|++++
T Consensus        80 ~~~~d~i~~v~d~~~~--~~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  154 (168)
T cd04163          80 LKDVDLVLFVVDASEP--IGEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKG  154 (168)
T ss_pred             HHhCCEEEEEEECCCc--cCchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccC
Confidence            7889999999999976  2222 222232322   25889999999999643332233334444444 368999999999


Q ss_pred             CCHHHHHHHHHHHc
Q 028466          157 FNIKALFRKIAAAL  170 (208)
Q Consensus       157 ~~v~~~~~~l~~~~  170 (208)
                      .|+++++++|.+.+
T Consensus       155 ~~~~~l~~~l~~~~  168 (168)
T cd04163         155 ENVDELLEEIVKYL  168 (168)
T ss_pred             CChHHHHHHHHhhC
Confidence            99999999998753

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.87  E-value=7.5e-21  Score=154.93  Aligned_cols=153  Identities=23%  Similarity=0.223  Sum_probs=110.4

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCc--------hhhccchhhhhcc
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ--------ERFRSLIPSYIRD   81 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~~   81 (208)
                      +|+|+|.+|||||||+|+|++.... ....++.+.+.......+++  ..+.+|||||.        +.+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            5899999999999999999987642 23345566666666666666  46999999996        3445556677899


Q ss_pred             CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCCHH
Q 028466           82 SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFNIK  160 (208)
Q Consensus        82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~  160 (208)
                      +|++++|+|+.++-.... ..+...+..   .+.|+++|+||+|+......    . ..+..++. .++++||.++.|+.
T Consensus        79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~-~~~~~lg~~~~~~vSa~~g~gv~  149 (429)
T TIGR03594        79 ADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----A-AEFYSLGFGEPIPISAEHGRGIG  149 (429)
T ss_pred             CCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----H-HHHHhcCCCCeEEEeCCcCCChH
Confidence            999999999986422221 112222222   25899999999998643321    1 22345565 79999999999999


Q ss_pred             HHHHHHHHHcCCCc
Q 028466          161 ALFRKIAAALPGME  174 (208)
Q Consensus       161 ~~~~~l~~~~~~~~  174 (208)
                      ++++++.+.+....
T Consensus       150 ~ll~~i~~~l~~~~  163 (429)
T TIGR03594       150 DLLDAILELLPEEE  163 (429)
T ss_pred             HHHHHHHHhcCccc
Confidence            99999999986643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.87  E-value=1.3e-20  Score=157.65  Aligned_cols=159  Identities=18%  Similarity=0.204  Sum_probs=112.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCC--CC-------------CCccceeeeeeeEEEEEE---CCeEEEEEEEecCCchh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDK--FD-------------NTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQER   70 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~--~~-------------~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~   70 (208)
                      --+++|+|+.++|||||+++|+...  ..             .+..+..++......+.+   ++..+.+++|||||+.+
T Consensus         7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d   86 (600)
T PRK05433          7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD   86 (600)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence            3589999999999999999997521  10             011223333332333333   45568899999999999


Q ss_pred             hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC---e
Q 028466           71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV---M  147 (208)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~  147 (208)
                      |...+..++..+|++|+|+|+++.........|....    ..+.|+++|+||+|+.....  .....++...+++   .
T Consensus        87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~~~  160 (600)
T PRK05433         87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDASD  160 (600)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCcce
Confidence            9999999999999999999999764444444443322    13688999999999854321  1122333333454   3


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHcCCC
Q 028466          148 FIETSAKAGFNIKALFRKIAAALPGM  173 (208)
Q Consensus       148 ~~~~S~~~~~~v~~~~~~l~~~~~~~  173 (208)
                      ++++||++|.|+++++++|.+.++..
T Consensus       161 vi~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        161 AVLVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             EEEEecCCCCCHHHHHHHHHHhCccc
Confidence            89999999999999999999988654

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.86  E-value=1.2e-20  Score=136.35  Aligned_cols=148  Identities=20%  Similarity=0.226  Sum_probs=96.7

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCch----------hhccch
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRSLI   75 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~   75 (208)
                      ..+.++|+|+|.+|+|||||+++|++..+.....++.+.+.....+..++   .+.+|||||..          .+....
T Consensus        15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~   91 (179)
T TIGR03598        15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI   91 (179)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence            35679999999999999999999998764333333333222222233332   58999999953          344444


Q ss_pred             hhhhcc---CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc--CcCHHHHHHHHHHcC--CeE
Q 028466           76 PSYIRD---SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR--QVSIEEGEAKARELN--VMF  148 (208)
Q Consensus        76 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~--~~~  148 (208)
                      ..+++.   +|++++|+|++++-+.... .++..+..   .+.|+++++||+|+.+..  +....+++..+...+  ..+
T Consensus        92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v  167 (179)
T TIGR03598        92 EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV  167 (179)
T ss_pred             HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence            455553   5899999999864333322 22222322   358999999999986432  223445555555554  479


Q ss_pred             EEeecCCCCCHH
Q 028466          149 IETSAKAGFNIK  160 (208)
Q Consensus       149 ~~~S~~~~~~v~  160 (208)
                      +++||++|+|++
T Consensus       168 ~~~Sa~~g~gi~  179 (179)
T TIGR03598       168 QLFSSLKKTGID  179 (179)
T ss_pred             EEEECCCCCCCC
Confidence            999999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.86  E-value=4.5e-20  Score=157.78  Aligned_cols=155  Identities=17%  Similarity=0.201  Sum_probs=115.5

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc----------hh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL----------IP   76 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~   76 (208)
                      |+.++|+++|.+|||||||+|+|++........+..+++.....+..+  ..++.+|||||+..+...          ..
T Consensus         1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~--~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~   78 (772)
T PRK09554          1 MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTT--DHQVTLVDLPGTYSLTTISSQTSLDEQIAC   78 (772)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcC--ceEEEEEECCCccccccccccccHHHHHHH
Confidence            456899999999999999999999876644445666665555555444  367999999998766432          12


Q ss_pred             hhh--ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecC
Q 028466           77 SYI--RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAK  154 (208)
Q Consensus        77 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  154 (208)
                      .++  ..+|++++|+|+++.+...   .+..++.+   .+.|+++++||+|+.+.... ....+++.+.++++++++|+.
T Consensus        79 ~~l~~~~aD~vI~VvDat~ler~l---~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~  151 (772)
T PRK09554         79 HYILSGDADLLINVVDASNLERNL---YLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVST  151 (772)
T ss_pred             HHHhccCCCEEEEEecCCcchhhH---HHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEee
Confidence            232  4789999999998754432   23333332   35899999999998654443 345677778889999999999


Q ss_pred             CCCCHHHHHHHHHHHc
Q 028466          155 AGFNIKALFRKIAAAL  170 (208)
Q Consensus       155 ~~~~v~~~~~~l~~~~  170 (208)
                      +++|++++.+.+.+..
T Consensus       152 ~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        152 RGRGIEALKLAIDRHQ  167 (772)
T ss_pred             cCCCHHHHHHHHHHhh
Confidence            9999999999998765

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.86  E-value=1.8e-20  Score=156.71  Aligned_cols=146  Identities=17%  Similarity=0.225  Sum_probs=111.4

Q ss_pred             cCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc------hhhhh--ccCCEEEE
Q 028466           16 GDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYI--RDSSVAVI   87 (208)
Q Consensus        16 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~   87 (208)
                      |.+|||||||+|++++........++.+.+.....+.+++  .++.+|||||+..+...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999998877555667777777777777766  45899999999876553      23333  37899999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      |+|+++.+..   ..+..++.   ..+.|+++|+||+|+.+..... .+.+.+.+.++++++++|+++++|++++++++.
T Consensus        79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            9999864322   22222222   2468999999999986544443 346777788899999999999999999999998


Q ss_pred             HHc
Q 028466          168 AAL  170 (208)
Q Consensus       168 ~~~  170 (208)
                      +..
T Consensus       152 ~~~  154 (591)
T TIGR00437       152 KAI  154 (591)
T ss_pred             HHh
Confidence            764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.86  E-value=3.4e-20  Score=158.73  Aligned_cols=154  Identities=20%  Similarity=0.172  Sum_probs=108.5

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchh--------hccchhhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSY   78 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~   78 (208)
                      ...+|+|+|.+|||||||+|+|++.... ....++.+.+.......+++  ..+.+|||||.+.        +......+
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            3478999999999999999999987642 23345666666655556655  4689999999763        33444567


Q ss_pred             hccCCEEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCC
Q 028466           79 IRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAG  156 (208)
Q Consensus        79 ~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~  156 (208)
                      +..+|++|+|+|+++.  +.... .|...+..   .+.|+++|+||+|+....    .....+ ...+. ..+++||++|
T Consensus       352 ~~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSA~~g  421 (712)
T PRK09518        352 VSLADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEF-WKLGLGEPYPISAMHG  421 (712)
T ss_pred             HHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccch----hhHHHH-HHcCCCCeEEEECCCC
Confidence            8899999999999753  22222 33333332   468999999999985321    111222 12232 4679999999


Q ss_pred             CCHHHHHHHHHHHcCCC
Q 028466          157 FNIKALFRKIAAALPGM  173 (208)
Q Consensus       157 ~~v~~~~~~l~~~~~~~  173 (208)
                      .|+.+++++|.+.+...
T Consensus       422 ~GI~eLl~~i~~~l~~~  438 (712)
T PRK09518        422 RGVGDLLDEALDSLKVA  438 (712)
T ss_pred             CCchHHHHHHHHhcccc
Confidence            99999999999998653

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.85  E-value=1.5e-20  Score=152.77  Aligned_cols=156  Identities=19%  Similarity=0.224  Sum_probs=105.9

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcCCC-------------------------------CCCccceeeeeeeEEEEEE
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKF-------------------------------DNTYQATIGIDFLSKTMYL   53 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~   53 (208)
                      +..+.++|+++|+.++|||||+++|+...-                               .++..+..+++.....+..
T Consensus         2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~   81 (425)
T PRK12317          2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET   81 (425)
T ss_pred             CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec
Confidence            445679999999999999999999973211                               1223455566666555555


Q ss_pred             CCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC--
Q 028466           54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ--  131 (208)
Q Consensus        54 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--  131 (208)
                      ++  +.+.+|||||++.|.......+..+|++++|+|++++.++.....+...+....+ ..++++++||+|+.+..+  
T Consensus        82 ~~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~  158 (425)
T PRK12317         82 DK--YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-INQLIVAINKMDAVNYDEKR  158 (425)
T ss_pred             CC--eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-CCeEEEEEEccccccccHHH
Confidence            44  6899999999998887766778899999999999863123222222222222222 246899999999964221  


Q ss_pred             --cCHHHHHHHHHHcC-----CeEEEeecCCCCCHHHHH
Q 028466          132 --VSIEEGEAKARELN-----VMFIETSAKAGFNIKALF  163 (208)
Q Consensus       132 --~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~~~  163 (208)
                        ....++..++...+     ++++++||++|+|+++..
T Consensus       159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence              11234455555444     479999999999998743

>cd00880 Era_like Era (E

Probab=99.85  E-value=3.1e-20  Score=130.82  Aligned_cols=152  Identities=20%  Similarity=0.182  Sum_probs=104.4

Q ss_pred             EEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-------chhhhhccCCEE
Q 028466           14 FLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPSYIRDSSVA   85 (208)
Q Consensus        14 vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~d~~   85 (208)
                      |+|+.|+|||||++++.+.... .......+............ ...+.+||+||...+..       ....++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999977554 33333333333333333332 35799999999776543       334578899999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHH---HHHHHHHHcCCeEEEeecCCCCCHHHH
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIE---EGEAKARELNVMFIETSAKAGFNIKAL  162 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~S~~~~~~v~~~  162 (208)
                      ++|+|++++....... +.....   ..+.|+++|+||.|+.........   .........+.+++++|+.++.|++++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999876555543 222222   246899999999998754332221   112223334578999999999999999


Q ss_pred             HHHHHHHc
Q 028466          163 FRKIAAAL  170 (208)
Q Consensus       163 ~~~l~~~~  170 (208)
                      +++|.+.+
T Consensus       156 ~~~l~~~~  163 (163)
T cd00880         156 REALIEAL  163 (163)
T ss_pred             HHHHHhhC
Confidence            99998753

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.84  E-value=4.5e-20  Score=149.88  Aligned_cols=153  Identities=18%  Similarity=0.231  Sum_probs=106.6

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhc--CCC-----------------------------CCCccceeeeeeeEEEEEEC
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMY--DKF-----------------------------DNTYQATIGIDFLSKTMYLE   54 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   54 (208)
                      +.+.++|+++|+.++|||||+++|+.  +..                             ..+..++.+++.....+..+
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            34579999999999999999999974  211                             11233455666666555554


Q ss_pred             CeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHh--HHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC-
Q 028466           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN--TTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ-  131 (208)
Q Consensus        55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-  131 (208)
                      +  +.+.||||||++.|.......+..+|++|+|+|++++++...  ...++ .+....+ ..+++|++||+|+.+..+ 
T Consensus        84 ~--~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~~-~~~iIVviNK~Dl~~~~~~  159 (426)
T TIGR00483        84 K--YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHA-FLARTLG-INQLIVAINKMDSVNYDEE  159 (426)
T ss_pred             C--eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHH-HHHHHcC-CCeEEEEEEChhccCccHH
Confidence            4  689999999999988777777899999999999998643211  11111 2222222 357899999999964222 


Q ss_pred             ---cCHHHHHHHHHHcC-----CeEEEeecCCCCCHHHH
Q 028466          132 ---VSIEEGEAKARELN-----VMFIETSAKAGFNIKAL  162 (208)
Q Consensus       132 ---~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~~  162 (208)
                         ....++..++...+     ++++++||+++.|+.+.
T Consensus       160 ~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~  198 (426)
T TIGR00483       160 EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKK  198 (426)
T ss_pred             HHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccc
Confidence               11345556666554     57999999999999863

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.8e-20  Score=130.46  Aligned_cols=172  Identities=32%  Similarity=0.554  Sum_probs=144.8

Q ss_pred             CCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhcc
Q 028466            2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD   81 (208)
Q Consensus         2 ~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   81 (208)
                      .|......++++++|..|.||||++++++.+.|...+.++.+.....-.+.-+.+.+++..|||.|++.+..+...++-+
T Consensus         3 ~p~~~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~   82 (216)
T KOG0096|consen    3 SPPQQGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQ   82 (216)
T ss_pred             CCccccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEe
Confidence            34444568999999999999999999999999999999999988877776665556899999999999999999999999


Q ss_pred             CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHH
Q 028466           82 SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKA  161 (208)
Q Consensus        82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~  161 (208)
                      +...|++||+...-.+..+..|...+.... .++||++++||.|... ++ .......+.+..++.+|++|++.+-|++.
T Consensus        83 ~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~-r~-~k~k~v~~~rkknl~y~~iSaksn~Nfek  159 (216)
T KOG0096|consen   83 GQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKA-RK-VKAKPVSFHRKKNLQYYEISAKSNYNFER  159 (216)
T ss_pred             cceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccc-cc-cccccceeeecccceeEEeeccccccccc
Confidence            999999999998888888999999988776 4699999999999743 22 12333444555678999999999999999


Q ss_pred             HHHHHHHHcCCCccC
Q 028466          162 LFRKIAAALPGMETL  176 (208)
Q Consensus       162 ~~~~l~~~~~~~~~~  176 (208)
                      .|-|+.+.+.+.+..
T Consensus       160 PFl~LarKl~G~p~L  174 (216)
T KOG0096|consen  160 PFLWLARKLTGDPSL  174 (216)
T ss_pred             chHHHhhhhcCCCCe
Confidence            999999998765543

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.84  E-value=2.2e-19  Score=146.56  Aligned_cols=161  Identities=22%  Similarity=0.231  Sum_probs=110.0

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCC-CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-----------ch
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----------LI   75 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~   75 (208)
                      ..++|+|+|.+|+|||||+|+|++... .....++.+.+.....+..++  ..+.+|||||......           ..
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            469999999999999999999997653 233445555555555555555  4688999999643221           12


Q ss_pred             hhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-H----cCCeEEE
Q 028466           76 PSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-E----LNVMFIE  150 (208)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~~  150 (208)
                      ..+++.+|++|+|+|++++.+.... .+...+..   .+.|+++|+||+|+.+...  ..+...... .    ..+++++
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~  323 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVF  323 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEE
Confidence            3467899999999999976444433 22222222   3589999999999863321  122222222 1    2478999


Q ss_pred             eecCCCCCHHHHHHHHHHHcCCCccC
Q 028466          151 TSAKAGFNIKALFRKIAAALPGMETL  176 (208)
Q Consensus       151 ~S~~~~~~v~~~~~~l~~~~~~~~~~  176 (208)
                      +||+++.|++++++.+.+.+.....+
T Consensus       324 ~SA~~~~gv~~l~~~i~~~~~~~~~~  349 (435)
T PRK00093        324 ISALTGQGVDKLLEAIDEAYENANRR  349 (435)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHHcCc
Confidence            99999999999999998876544433

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.84  E-value=1.1e-19  Score=155.65  Aligned_cols=165  Identities=22%  Similarity=0.259  Sum_probs=115.4

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchh----------hccc-h
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSL-I   75 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~   75 (208)
                      ..++|+++|.+|||||||+|+|++.... ....++.+.+.....+.+++.  .+.+|||||...          +..+ .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence            4589999999999999999999988752 233455566666666667664  477999999532          2221 1


Q ss_pred             hhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-Hc----CCeEEE
Q 028466           76 PSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-EL----NVMFIE  150 (208)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~~----~~~~~~  150 (208)
                      ..+++.+|++++|+|+++..+..... ++..+..   .+.|+++|+||+|+.+...  ....+.... .+    ..++++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~  600 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN  600 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence            33478999999999999876665543 2333322   4689999999999965322  122222222 11    356799


Q ss_pred             eecCCCCCHHHHHHHHHHHcCCCccCCccc
Q 028466          151 TSAKAGFNIKALFRKIAAALPGMETLSSTK  180 (208)
Q Consensus       151 ~S~~~~~~v~~~~~~l~~~~~~~~~~~~~~  180 (208)
                      +||++|.|++++++.+.+.+.....+-++.
T Consensus       601 iSAktg~gv~~L~~~i~~~~~~~~~~i~T~  630 (712)
T PRK09518        601 LSAKTGWHTNRLAPAMQEALESWDQRIPTG  630 (712)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHhcccCChH
Confidence            999999999999999999987666555553

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=2.6e-20  Score=127.98  Aligned_cols=162  Identities=23%  Similarity=0.338  Sum_probs=123.6

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcC---CC----CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhh
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYD---KF----DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY   78 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~   78 (208)
                      .-..+.++|+|..++|||||+.++...   .+    +..-.++.+.......+.  +  ..+.+||.+|++..+++|..|
T Consensus        14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~--~--~~l~fwdlgGQe~lrSlw~~y   89 (197)
T KOG0076|consen   14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC--N--APLSFWDLGGQESLRSLWKKY   89 (197)
T ss_pred             hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec--c--ceeEEEEcCChHHHHHHHHHH
Confidence            345689999999999999999987532   11    223345555555554443  3  469999999999999999999


Q ss_pred             hccCCEEEEEEeCCChhhHHhHHHHHHHH-HhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHH------HcCCeEEEe
Q 028466           79 IRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR------ELNVMFIET  151 (208)
Q Consensus        79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~-~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~  151 (208)
                      +..+|++|+++|+++++.|+.....+..+ .+..-.++|+++.+||.|+....  ..++++....      +...++.++
T Consensus        90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~--~~~El~~~~~~~e~~~~rd~~~~pv  167 (197)
T KOG0076|consen   90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM--EAAELDGVFGLAELIPRRDNPFQPV  167 (197)
T ss_pred             HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh--hHHHHHHHhhhhhhcCCccCccccc
Confidence            99999999999999999998866655554 34444789999999999985442  2334433333      123579999


Q ss_pred             ecCCCCCHHHHHHHHHHHcCCC
Q 028466          152 SAKAGFNIKALFRKIAAALPGM  173 (208)
Q Consensus       152 S~~~~~~v~~~~~~l~~~~~~~  173 (208)
                      |+.+|+||++-..|+...+.+.
T Consensus       168 Sal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  168 SALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhhcccHHHHHHHHHHHHhhc
Confidence            9999999999999999998765

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.83  E-value=1.4e-19  Score=145.95  Aligned_cols=163  Identities=22%  Similarity=0.189  Sum_probs=109.0

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCC---CCCccceeeeeeeEEEEE--------------E----CC------eEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLSKTMY--------------L----ED------RTVR   59 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~--------------~----~~------~~~~   59 (208)
                      ++.++|+++|+.++|||||+++|.+...   .++..+..+++.....+.              .    +.      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            4579999999999999999999975322   122222233222211110              0    11      1357


Q ss_pred             EEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc--CHHHH
Q 028466           60 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV--SIEEG  137 (208)
Q Consensus        60 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~  137 (208)
                      +.+|||||++.|...+......+|++++|+|++++....+..+.+..+. ..+ ..++++++||+|+.+....  ...++
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~g-i~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALE-IIG-IKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHH-HcC-CCeEEEEEEccccCCHHHHHHHHHHH
Confidence            9999999999999888888889999999999986421222333333332 221 2568899999999653221  12344


Q ss_pred             HHHHHHc---CCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          138 EAKAREL---NVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       138 ~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      ..+....   +++++++|+++++|+++++++|...++
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            4444443   568999999999999999999998765

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.83  E-value=5.1e-19  Score=123.17  Aligned_cols=158  Identities=21%  Similarity=0.284  Sum_probs=118.8

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCC--------CCc----cceeeeeeeEEEEEECCeEEEEEEEecCCchhh
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFD--------NTY----QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~--------~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (208)
                      ...+.+.||+|.|+.++||||+++++......        .++    ..|...++.......   ...++++|||||++|
T Consensus         5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~---~~~v~LfgtPGq~RF   81 (187)
T COG2229           5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE---DTGVHLFGTPGQERF   81 (187)
T ss_pred             cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC---cceEEEecCCCcHHH
Confidence            45678999999999999999999999876531        111    123334444444322   246899999999999


Q ss_pred             ccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc--CCeEE
Q 028466           72 RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL--NVMFI  149 (208)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~  149 (208)
                      ..+|..+.++++++|+++|.+.+..+ +....+.-+....  .+|++|.+||.|+.....  .+.+++.....  .++.+
T Consensus        82 ~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~p--pe~i~e~l~~~~~~~~vi  156 (187)
T COG2229          82 KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDALP--PEKIREALKLELLSVPVI  156 (187)
T ss_pred             HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCCCC--HHHHHHHHHhccCCCcee
Confidence            99999999999999999999988777 4444444443332  299999999999976543  33444444433  78999


Q ss_pred             EeecCCCCCHHHHHHHHHHH
Q 028466          150 ETSAKAGFNIKALFRKIAAA  169 (208)
Q Consensus       150 ~~S~~~~~~v~~~~~~l~~~  169 (208)
                      +.++.++++..+.++.+...
T Consensus       157 ~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         157 EIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             eeecccchhHHHHHHHHHhh
Confidence            99999999999999998877

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.83  E-value=2.6e-19  Score=148.96  Aligned_cols=156  Identities=19%  Similarity=0.174  Sum_probs=104.4

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC----------------CeEEEEEEEecCCchhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE----------------DRTVRLQLWDTAGQERF   71 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~   71 (208)
                      +..-|+++|++++|||||+++|.+..+......+.+.+.....+..+                .....+.||||||++.|
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            45679999999999999999999887754433323222211111111                00123889999999999


Q ss_pred             ccchhhhhccCCEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc------------CHHH
Q 028466           72 RSLIPSYIRDSSVAVIVYDVAS---RQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV------------SIEE  136 (208)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~------------~~~~  136 (208)
                      ..++..+++.+|++++|+|+++   +++++.+.    .+.   ..+.|+++++||+|+.+....            ....
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~---~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~  155 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN----ILR---MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ  155 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHH---HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence            9999999999999999999986   34443332    122   136899999999999642110            0000


Q ss_pred             H------------HHHHH------------Hc--CCeEEEeecCCCCCHHHHHHHHHHHc
Q 028466          137 G------------EAKAR------------EL--NVMFIETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       137 ~------------~~~~~------------~~--~~~~~~~S~~~~~~v~~~~~~l~~~~  170 (208)
                      +            .++..            ++  .++++++||++|+|+++++.+|....
T Consensus       156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence            0            01110            11  25899999999999999999987543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.83  E-value=2.9e-19  Score=141.22  Aligned_cols=154  Identities=24%  Similarity=0.273  Sum_probs=117.0

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccch--------hhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------PSY   78 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~   78 (208)
                      ..++++++|.||+|||||+|.|++.... .+..++.|.|.....+.+++  +.+.++||+|..+-...+        ...
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            4689999999999999999999987663 46678888999999999988  789999999976544433        334


Q ss_pred             hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466           79 IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN  158 (208)
Q Consensus        79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (208)
                      +.++|.+++|+|++.+.+-... ..+.    ....++|+++|.||.|+.........     ....+..++.+|+++++|
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~-~~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~G  363 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDL-ALIE----LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEG  363 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhH-HHHH----hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccC
Confidence            7899999999999975221111 1111    23356899999999999765432111     112234689999999999


Q ss_pred             HHHHHHHHHHHcCCC
Q 028466          159 IKALFRKIAAALPGM  173 (208)
Q Consensus       159 v~~~~~~l~~~~~~~  173 (208)
                      ++.+.+.|.+.+...
T Consensus       364 l~~L~~~i~~~~~~~  378 (454)
T COG0486         364 LDALREAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999998665

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.83  E-value=1.7e-19  Score=133.17  Aligned_cols=148  Identities=23%  Similarity=0.279  Sum_probs=97.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCC-------------------------------CCccceeeeeeeEEEEEECCeEEE
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFD-------------------------------NTYQATIGIDFLSKTMYLEDRTVR   59 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~   59 (208)
                      +|+|+|++|+|||||+++|+...-.                               .+..+..+++.....+.+.+  .+
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence            6899999999999999999743211                               11124444555444444444  57


Q ss_pred             EEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc----CHH
Q 028466           60 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV----SIE  135 (208)
Q Consensus        60 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~----~~~  135 (208)
                      +.+|||||+..|...+...+..+|++|+|+|++++.. ........ +....+ ..++|+|+||+|+......    ...
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-~~~~~~~~-~~~~~~-~~~iIvviNK~D~~~~~~~~~~~i~~  155 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-EQTRRHSY-ILSLLG-IRHVVVAVNKMDLVDYSEEVFEEIVA  155 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-HhHHHHHH-HHHHcC-CCcEEEEEEchhcccCCHHHHHHHHH
Confidence            8999999999887777777899999999999986421 11112112 222221 2457888999998643221    123


Q ss_pred             HHHHHHHHcC---CeEEEeecCCCCCHHHHH
Q 028466          136 EGEAKARELN---VMFIETSAKAGFNIKALF  163 (208)
Q Consensus       136 ~~~~~~~~~~---~~~~~~S~~~~~~v~~~~  163 (208)
                      +++.++..++   .+++++||+++.|+.+..
T Consensus       156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~  186 (208)
T cd04166         156 DYLAFAAKLGIEDITFIPISALDGDNVVSRS  186 (208)
T ss_pred             HHHHHHHHcCCCCceEEEEeCCCCCCCccCC
Confidence            4444555555   358999999999988543

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.83  E-value=1.2e-18  Score=130.45  Aligned_cols=152  Identities=21%  Similarity=0.250  Sum_probs=103.9

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc-------cchhhhhccCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRDSS   83 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d   83 (208)
                      +|+++|.+|+|||||+++|.+........+..+.+.....+.+++  ..+.+||+||.....       .....+++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            789999999999999999998764333334444455555555655  579999999975322       23345789999


Q ss_pred             EEEEEEeCCChh-hHHhHHHHHHH----------------------------------------HHhhc-----------
Q 028466           84 VAVIVYDVASRQ-SFLNTTKWVEE----------------------------------------VRTER-----------  111 (208)
Q Consensus        84 ~~i~v~d~~~~~-s~~~~~~~~~~----------------------------------------~~~~~-----------  111 (208)
                      ++++|+|+++++ ....+...+..                                        +....           
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998754 22222222211                                        11000           


Q ss_pred             --------------CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          112 --------------GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       112 --------------~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                                    ....|+++|+||+|+..     ..+...++..  ..++++||+++.|++++++.|.+.+.
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L~  226 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKLG  226 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence                          12368899999999853     2333344433  35899999999999999999998763

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.82  E-value=9.5e-20  Score=121.07  Aligned_cols=160  Identities=19%  Similarity=0.255  Sum_probs=120.4

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+++||+++|-.++|||||+.+|.+.... ...|+.+  +....+..++ .+++++||.+|+...+..|..|+.++|++|
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lI   90 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLI   90 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChh-hccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEE
Confidence            57899999999999999999999765542 2344444  4455555544 368999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHH---HcCCeEEEeecCCCCCHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR---ELNVMFIETSAKAGFNIKAL  162 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~S~~~~~~v~~~  162 (208)
                      +|+|.+|...|+++-+.+..+.... ...+|+++.+||.|+.-+........+.-..   ..-..+-++|+.+++|+..-
T Consensus        91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg  170 (185)
T KOG0074|consen   91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDG  170 (185)
T ss_pred             EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCc
Confidence            9999999888988766666665443 3679999999999986443332222211111   11246788999999999999


Q ss_pred             HHHHHHHc
Q 028466          163 FRKIAAAL  170 (208)
Q Consensus       163 ~~~l~~~~  170 (208)
                      .+|+....
T Consensus       171 ~~wv~sn~  178 (185)
T KOG0074|consen  171 SDWVQSNP  178 (185)
T ss_pred             chhhhcCC
Confidence            98887654

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.82  E-value=4.8e-19  Score=142.76  Aligned_cols=165  Identities=21%  Similarity=0.211  Sum_probs=107.7

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCC---CCCCccceeeeeeeEEEEEE------------------C------CeEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGIDFLSKTMYL------------------E------DRTV   58 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~------------------~------~~~~   58 (208)
                      ..+.++|+++|+.++|||||+.+|.+..   ..++..+..+++.....+.+                  +      +...
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR   85 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence            3457999999999999999999996531   12222333443332211111                  0      0125


Q ss_pred             EEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc--CHHH
Q 028466           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV--SIEE  136 (208)
Q Consensus        59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~  136 (208)
                      .++||||||++.|..........+|++++|+|++++....+....+..+.. .+ ..|+++|+||+|+.+..+.  ...+
T Consensus        86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~-i~~iiVVlNK~Dl~~~~~~~~~~~~  163 (411)
T PRK04000         86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IG-IKNIVIVQNKIDLVSKERALENYEQ  163 (411)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cC-CCcEEEEEEeeccccchhHHHHHHH
Confidence            799999999999887777777788999999999854211111222222222 21 2468899999999653321  1234


Q ss_pred             HHHHHHHc---CCeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466          137 GEAKAREL---NVMFIETSAKAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       137 ~~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~~~~  172 (208)
                      +..++..+   +.+++++|+++++|++++++.|...+..
T Consensus       164 i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        164 IKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             HHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            44444432   4689999999999999999999987754

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.82  E-value=6.1e-19  Score=147.91  Aligned_cols=158  Identities=18%  Similarity=0.166  Sum_probs=111.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC---CCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD---KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      -|.++|+.++|||||+++|++.   .+.++..+.++++.....+...+. ..+.||||||++.|.......+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g-~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG-RVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC-cEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            5789999999999999999863   344455566666665555443322 358999999999998888888999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccCc--CHHHHHHHHHHcC---CeEEEeecCCCCCHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQV--SIEEGEAKARELN---VMFIETSAKAGFNIKA  161 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~S~~~~~~v~~  161 (208)
                      |+|+.+. ...+..+.+..+ ...  +.| ++||+||+|+.+....  ...++..++...+   .+++++|+++|.|+++
T Consensus        81 VVda~eg-~~~qT~ehl~il-~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~  156 (614)
T PRK10512         81 VVACDDG-VMAQTREHLAIL-QLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA  156 (614)
T ss_pred             EEECCCC-CcHHHHHHHHHH-HHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence            9999862 112222222222 222  344 5789999999643221  1234445554444   6899999999999999


Q ss_pred             HHHHHHHHcCCC
Q 028466          162 LFRKIAAALPGM  173 (208)
Q Consensus       162 ~~~~l~~~~~~~  173 (208)
                      +++.|.+.....
T Consensus       157 L~~~L~~~~~~~  168 (614)
T PRK10512        157 LREHLLQLPERE  168 (614)
T ss_pred             HHHHHHHhhccc
Confidence            999999876543

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.82  E-value=8.3e-19  Score=127.83  Aligned_cols=145  Identities=17%  Similarity=0.130  Sum_probs=97.3

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCC----------------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   72 (208)
                      .++|+++|+.++|||||+++|++...                ..+..+..+++...  ..+.....++.++||||+..|.
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~--~~~~~~~~~i~~iDtPG~~~~~   79 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAH--VEYETANRHYAHVDCPGHADYI   79 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeee--eEecCCCeEEEEEECcCHHHHH
Confidence            48999999999999999999975310                11123344444433  3344444678999999999998


Q ss_pred             cchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccCc---CHHHHHHHHHHc----
Q 028466           73 SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQV---SIEEGEAKAREL----  144 (208)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~---~~~~~~~~~~~~----  144 (208)
                      ......+..+|++++|+|+...-. ......+..+..   .+.| +|+++||+|+....+.   ...+++......    
T Consensus        80 ~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~  155 (195)
T cd01884          80 KNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG  155 (195)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence            888888999999999999985311 122233333332   2455 7788999998632221   123445555444    


Q ss_pred             -CCeEEEeecCCCCCH
Q 028466          145 -NVMFIETSAKAGFNI  159 (208)
Q Consensus       145 -~~~~~~~S~~~~~~v  159 (208)
                       +++++++|+++|.++
T Consensus       156 ~~v~iipiSa~~g~n~  171 (195)
T cd01884         156 DNTPIVRGSALKALEG  171 (195)
T ss_pred             cCCeEEEeeCccccCC
Confidence             368999999999885

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.82  E-value=3.7e-19  Score=148.59  Aligned_cols=157  Identities=17%  Similarity=0.256  Sum_probs=112.4

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc--CCCCC--------------CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY--DKFDN--------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL   74 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   74 (208)
                      +|+|+|+.++|||||+++|+.  +.+..              +..+.+++......+.+.  .+.+++|||||+.+|...
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~--~~kinlIDTPGh~DF~~e   80 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYN--GTKINIVDTPGHADFGGE   80 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEEC--CEEEEEEECCCHHHHHHH
Confidence            799999999999999999985  22211              112233333333344454  478999999999999999


Q ss_pred             hhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC-cCHHHHHHHHH-------HcCC
Q 028466           75 IPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ-VSIEEGEAKAR-------ELNV  146 (208)
Q Consensus        75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~  146 (208)
                      +..+++.+|++++|+|+.+. ...+...|+..+..   .+.|+++|+||+|+...+. ....++..++.       +..+
T Consensus        81 v~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~  156 (594)
T TIGR01394        81 VERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF  156 (594)
T ss_pred             HHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence            99999999999999999863 33444555555543   3588899999999854321 11233333332       2346


Q ss_pred             eEEEeecCCCC----------CHHHHHHHHHHHcCCC
Q 028466          147 MFIETSAKAGF----------NIKALFRKIAAALPGM  173 (208)
Q Consensus       147 ~~~~~S~~~~~----------~v~~~~~~l~~~~~~~  173 (208)
                      +++.+|++++.          |+..+|+.|.+.++..
T Consensus       157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence            79999999995          8999999999998754

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.81  E-value=6e-19  Score=120.17  Aligned_cols=135  Identities=21%  Similarity=0.309  Sum_probs=101.3

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCC----chhhccchhhhhccCCEEE
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----QERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~~~~~~~~~~~~~~d~~i   86 (208)
                      ||+++|+.|+|||||+++|.+...  .+..|..+.+            .=.++||||    +..|.+.......++|+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~------------~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY------------YDNTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe------------cccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999988665  3444544332            123589999    4456666666678999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~  165 (208)
                      +|.|++++.+.-.     ..+...  .+.|+|-|+||+|+.. ...+.++++++.+..|+ .+|++|+.+++|++++.++
T Consensus        69 ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   69 LLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             EEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            9999997643221     111111  2588999999999963 34467788888888887 6899999999999999998


Q ss_pred             HH
Q 028466          166 IA  167 (208)
Q Consensus       166 l~  167 (208)
                      |.
T Consensus       141 L~  142 (143)
T PF10662_consen  141 LE  142 (143)
T ss_pred             Hh
Confidence            85

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.81  E-value=1.3e-18  Score=137.14  Aligned_cols=169  Identities=24%  Similarity=0.222  Sum_probs=124.7

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-----------ch
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----------LI   75 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~   75 (208)
                      ..+||+|+|.|++|||||+|+|++.+-. ....++.|++.....+.+++  ..+.++||+|...-..           -.
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence            4699999999999999999999987653 45567777888888888877  4588999999543222           22


Q ss_pred             hhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc-----CCeEEE
Q 028466           76 PSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL-----NVMFIE  150 (208)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~  150 (208)
                      ...+..+|++++|+|++.+  +.++...+..+...  .+.++++|+||.|+.+..+...++.+...+..     +++++.
T Consensus       255 ~~aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~--~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~  330 (444)
T COG1160         255 LKAIERADVVLLVIDATEG--ISEQDLRIAGLIEE--AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF  330 (444)
T ss_pred             HhHHhhcCEEEEEEECCCC--chHHHHHHHHHHHH--cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence            3457789999999999954  44444434444333  35788999999999876545555554444432     468999


Q ss_pred             eecCCCCCHHHHHHHHHHHcCCCccCCccccc
Q 028466          151 TSAKAGFNIKALFRKIAAALPGMETLSSTKQE  182 (208)
Q Consensus       151 ~S~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~  182 (208)
                      +||+++.++.++|+.+.+.+.....+-++...
T Consensus       331 iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~L  362 (444)
T COG1160         331 ISALTGQGLDKLFEAIKEIYECATRRISTSLL  362 (444)
T ss_pred             EEecCCCChHHHHHHHHHHHHHhccccCHHHH
Confidence            99999999999999999988766666555443

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.81  E-value=1.6e-18  Score=144.64  Aligned_cols=156  Identities=22%  Similarity=0.254  Sum_probs=102.6

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC------CeE-----E-----EEEEEecCCchh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE------DRT-----V-----RLQLWDTAGQER   70 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-----~-----~~~i~D~~G~~~   70 (208)
                      .+...|+++|+.++|||||+++|.+...........+.+........+      +..     .     .++||||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            566789999999999999999998765543332222222211111110      111     1     278999999999


Q ss_pred             hccchhhhhccCCEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc--C----------HH
Q 028466           71 FRSLIPSYIRDSSVAVIVYDVAS---RQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV--S----------IE  135 (208)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~----------~~  135 (208)
                      |..++...+..+|++++|+|+++   +++++.+..    +.   ..++|+++++||+|+.+....  .          ..
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~---~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~  156 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LK---RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ  156 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HH---HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence            99998888999999999999986   444443321    22   136899999999998532110  0          00


Q ss_pred             -----------HHHHHHHHc---------------CCeEEEeecCCCCCHHHHHHHHHHH
Q 028466          136 -----------EGEAKAREL---------------NVMFIETSAKAGFNIKALFRKIAAA  169 (208)
Q Consensus       136 -----------~~~~~~~~~---------------~~~~~~~S~~~~~~v~~~~~~l~~~  169 (208)
                                 ++.......               .+.++++|+++|+|++++++.+...
T Consensus       157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~  216 (586)
T PRK04004        157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL  216 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence                       011111111               2579999999999999999888653

>PRK10218 GTP-binding protein; Provisional

Probab=99.81  E-value=2e-18  Score=144.13  Aligned_cols=161  Identities=18%  Similarity=0.268  Sum_probs=113.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhc--CCCCCC------------ccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMY--DKFDNT------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL   74 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   74 (208)
                      -.+|+|+|+.++|||||+++|+.  +.+...            .+...++++......+....+.+.+|||||+.+|...
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            46899999999999999999986  333221            1223444555555445555588999999999999999


Q ss_pred             hhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC-cCHHHHHHHHHH-------cCC
Q 028466           75 IPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ-VSIEEGEAKARE-------LNV  146 (208)
Q Consensus        75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~~  146 (208)
                      +..+++.+|++|+|+|+.+.. ..+...++..+..   .+.|.++++||+|+...+. ....++......       ..+
T Consensus        85 v~~~l~~aDg~ILVVDa~~G~-~~qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~  160 (607)
T PRK10218         85 VERVMSMVDSVLLVVDAFDGP-MPQTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF  160 (607)
T ss_pred             HHHHHHhCCEEEEEEecccCc-cHHHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence            999999999999999998632 2223333333332   3588899999999864322 112333333322       235


Q ss_pred             eEEEeecCCCC----------CHHHHHHHHHHHcCCC
Q 028466          147 MFIETSAKAGF----------NIKALFRKIAAALPGM  173 (208)
Q Consensus       147 ~~~~~S~~~~~----------~v~~~~~~l~~~~~~~  173 (208)
                      +++.+|+.+|.          ++..+++.|.+.++..
T Consensus       161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence            78999999997          6899999999998754

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.81  E-value=1.6e-21  Score=135.33  Aligned_cols=168  Identities=35%  Similarity=0.551  Sum_probs=143.6

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeE-EEEEEEecCCchhhccchhhhhccCCEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      ..-++++|+|.-|+|||+++.+++...+...|..+++.++..+...++... +++.+||..|++.|..+..-|++.+++.
T Consensus        23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~  102 (229)
T KOG4423|consen   23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA  102 (229)
T ss_pred             hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence            446899999999999999999999999988889999999988888777644 4789999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhc----CCCCeEEEEEeCCCCcCccC-cCHHHHHHHHHHcCC-eEEEeecCCCCCH
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTER----GSDVIIVLVGNKTDLVDKRQ-VSIEEGEAKARELNV-MFIETSAKAGFNI  159 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~-~~~~~S~~~~~~v  159 (208)
                      ++|||+++.-+|+....|.+.+....    +...|+++.+||+|+...-. .......++.++++. ..+++|++.+.++
T Consensus       103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni  182 (229)
T KOG4423|consen  103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNI  182 (229)
T ss_pred             EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccCh
Confidence            99999999999999999998875432    24567899999999854322 224677788888875 7999999999999


Q ss_pred             HHHHHHHHHHcCCCc
Q 028466          160 KALFRKIAAALPGME  174 (208)
Q Consensus       160 ~~~~~~l~~~~~~~~  174 (208)
                      .|+-..|.+++....
T Consensus       183 ~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  183 PEAQRELVEKILVND  197 (229)
T ss_pred             hHHHHHHHHHHHhhc
Confidence            999999999987655

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.81  E-value=4.8e-19  Score=131.75  Aligned_cols=146  Identities=21%  Similarity=0.220  Sum_probs=96.0

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC---------------------------C----CCCccceeeeeeeEEEEEECCeEEE
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK---------------------------F----DNTYQATIGIDFLSKTMYLEDRTVR   59 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~---------------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~   59 (208)
                      +|+++|+.++|||||+.+|+...                           +    ..+..+..+++.....+.+.+  +.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence            58999999999999999986220                           0    112233444555555555544  67


Q ss_pred             EEEEecCCchhhccchhhhhccCCEEEEEEeCCChh-----hH-HhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc--cC
Q 028466           60 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ-----SF-LNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK--RQ  131 (208)
Q Consensus        60 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-----s~-~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~  131 (208)
                      +.+|||||+..|.......+..+|++|+|+|++++.     .. .+....+... ... ...|+++++||+|+...  .+
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~iiivvNK~Dl~~~~~~~  156 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL-GVKQLIVAVNKMDDVTVNWSE  156 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc-CCCeEEEEEEccccccccccH
Confidence            999999999888887777888999999999998742     11 1122222222 222 23688989999999632  11


Q ss_pred             cC----HHHHHHHHHHcC-----CeEEEeecCCCCCHH
Q 028466          132 VS----IEEGEAKARELN-----VMFIETSAKAGFNIK  160 (208)
Q Consensus       132 ~~----~~~~~~~~~~~~-----~~~~~~S~~~~~~v~  160 (208)
                      ..    ..++.......+     ++++++||++|+|++
T Consensus       157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            11    222233344433     569999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.80  E-value=2.1e-18  Score=122.79  Aligned_cols=151  Identities=25%  Similarity=0.335  Sum_probs=97.8

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh----------hccchhhhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSLIPSYIR   80 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~   80 (208)
                      .|+++|.+|+|||||++.+.++.......++.+.+.....+..+.   .+.+|||||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            489999999999999999996655444444444333333333333   789999999533          3334444444


Q ss_pred             ---cCCEEEEEEeCCChhhH--HhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc--CHHHHHHHHH--HcCCeEEEe
Q 028466           81 ---DSSVAVIVYDVASRQSF--LNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV--SIEEGEAKAR--ELNVMFIET  151 (208)
Q Consensus        81 ---~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~--~~~~~~~~~  151 (208)
                         +.+++++++|.......  ..+..|+..      .+.|+++|+||+|+....+.  ..........  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               45788999998754221  223333322      24889999999998543221  1122222232  234589999


Q ss_pred             ecCCCCCHHHHHHHHHHHc
Q 028466          152 SAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       152 S~~~~~~v~~~~~~l~~~~  170 (208)
                      |++++.++.+++++|.+.+
T Consensus       152 Sa~~~~~~~~l~~~l~~~~  170 (170)
T cd01876         152 SSLKGQGIDELRALIEKWL  170 (170)
T ss_pred             ecCCCCCHHHHHHHHHHhC
Confidence            9999999999999998753

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.80  E-value=6.6e-18  Score=126.72  Aligned_cols=111  Identities=20%  Similarity=0.227  Sum_probs=79.0

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCC--------------C----CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFD--------------N----TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~--------------~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   72 (208)
                      +|+++|+.|+|||||+++|+...-.              +    +..+..++......+.+.+  +++.+|||||+..|.
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~--~~i~liDTPG~~~f~   78 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED--TKVNLIDTPGHMDFI   78 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC--EEEEEEeCCCccchH
Confidence            5899999999999999999753110              0    1112222333334444444  689999999999999


Q ss_pred             cchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466           73 SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV  127 (208)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~  127 (208)
                      ..+..+++.+|++++|+|+++.-.. ....++..+..   .+.|+++++||+|+.
T Consensus        79 ~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~  129 (237)
T cd04168          79 AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence            9999999999999999999864322 23444444433   358999999999985

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=1.7e-19  Score=120.23  Aligned_cols=160  Identities=22%  Similarity=0.305  Sum_probs=117.9

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      ++.+|+++|..|+||++++-++.-++.... .|+++.  ....+.+  ++.++.+||.+|+...+..|+.|+.+.|++|+
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvtt-kPtigf--nve~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGF--NVETVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCc--Ccccccc--ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            789999999999999999999876665433 455443  2333334  44889999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHh-hcCCCCeEEEEEeCCCCcCccCcCH---HHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRT-ERGSDVIIVLVGNKTDLVDKRQVSI---EEGEAKARELNVMFIETSAKAGFNIKALF  163 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (208)
                      |+|.+|.+.+......+..+.+ ....+..++|++||.|........+   .......++.-..++++||.+|+|++..+
T Consensus        92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~  171 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM  171 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence            9999998877765444444433 3335577889999999854321111   11111222223679999999999999999


Q ss_pred             HHHHHHcCC
Q 028466          164 RKIAAALPG  172 (208)
Q Consensus       164 ~~l~~~~~~  172 (208)
                      +||.+.+..
T Consensus       172 DWL~~~l~~  180 (182)
T KOG0072|consen  172 DWLQRPLKS  180 (182)
T ss_pred             HHHHHHHhc
Confidence            999988753

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.78  E-value=8.3e-18  Score=138.25  Aligned_cols=159  Identities=18%  Similarity=0.214  Sum_probs=124.0

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc------chhhhh-
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSYI-   79 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~-   79 (208)
                      ++..+|+++|.||||||||+|+|++.+..-...++.|++.....+...++  .+.++|.||.-....      ..+.|+ 
T Consensus         1 ~~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll   78 (653)
T COG0370           1 MKKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLL   78 (653)
T ss_pred             CCcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHh
Confidence            35678999999999999999999998887778899999998888888774  499999999543322      233443 


Q ss_pred             -ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466           80 -RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN  158 (208)
Q Consensus        80 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (208)
                       ...|++|-|.|+++.+....+.-.   +   ...+.|++++.|+.|..+.+-+ ....+++.+.+|+++++++|++|.|
T Consensus        79 ~~~~D~ivnVvDAtnLeRnLyltlQ---L---lE~g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G  151 (653)
T COG0370          79 EGKPDLIVNVVDATNLERNLYLTLQ---L---LELGIPMILALNMIDEAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEG  151 (653)
T ss_pred             cCCCCEEEEEcccchHHHHHHHHHH---H---HHcCCCeEEEeccHhhHHhcCC-cccHHHHHHHhCCCEEEEEeecCCC
Confidence             357999999999976544433222   2   2236889999999998654433 4466778888999999999999999


Q ss_pred             HHHHHHHHHHHcCCCc
Q 028466          159 IKALFRKIAAALPGME  174 (208)
Q Consensus       159 v~~~~~~l~~~~~~~~  174 (208)
                      ++++...+.+......
T Consensus       152 ~~~l~~~i~~~~~~~~  167 (653)
T COG0370         152 LEELKRAIIELAESKT  167 (653)
T ss_pred             HHHHHHHHHHhccccc
Confidence            9999999998765544

>cd04167 Snu114p Snu114p subfamily

Probab=99.78  E-value=4.8e-18  Score=125.96  Aligned_cols=113  Identities=24%  Similarity=0.297  Sum_probs=79.3

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCC-------------------ccceeeeeeeEEEEEE---CCeEEEEEEEecCCc
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNT-------------------YQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQ   68 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~   68 (208)
                      +|+|+|+.|+|||||+++|+.......                   .....++......+.+   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            689999999999999999986543211                   1111222222222222   345678999999999


Q ss_pred             hhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466           69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV  127 (208)
Q Consensus        69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~  127 (208)
                      ..|......++..+|++++|+|+++..+... ..++..+..   .+.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            9998888889999999999999986544432 333333322   348999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.78  E-value=1.4e-17  Score=133.81  Aligned_cols=159  Identities=18%  Similarity=0.180  Sum_probs=108.1

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCC----------------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (208)
                      .+.++|+++|+.++|||||+++|++...                .++..+..+++..  ...+......+.++||||+++
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~--~~~~~~~~~~i~~iDtPGh~~   87 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTA--HVEYETEKRHYAHVDCPGHAD   87 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEE--eeEecCCCcEEEEEECCCHHH
Confidence            3568999999999999999999975210                1122344444443  334444446789999999999


Q ss_pred             hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccCcC---HHHHHHHHHHcC-
Q 028466           71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQVS---IEEGEAKARELN-  145 (208)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~---~~~~~~~~~~~~-  145 (208)
                      |.......+..+|++++|+|+...- ..+..+.+..+..   .+.| +|+++||+|+.+..+..   ..++..++...+ 
T Consensus        88 f~~~~~~~~~~~d~~llVvd~~~g~-~~~t~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~  163 (394)
T PRK12736         88 YVKNMITGAAQMDGAILVVAATDGP-MPQTREHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCC-chhHHHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence            9887777788999999999998531 1122233333332   2466 67889999986432221   234455555444 


Q ss_pred             ----CeEEEeecCCCC--------CHHHHHHHHHHHcC
Q 028466          146 ----VMFIETSAKAGF--------NIKALFRKIAAALP  171 (208)
Q Consensus       146 ----~~~~~~S~~~~~--------~v~~~~~~l~~~~~  171 (208)
                          ++++++|++++.        ++.++++.|.+.++
T Consensus       164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence                579999999983        67888888888775

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.78  E-value=1.4e-17  Score=133.98  Aligned_cols=146  Identities=17%  Similarity=0.138  Sum_probs=98.1

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcC----------------CCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCch
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYD----------------KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   69 (208)
                      ..+.++|+++|+.++|||||+++|++.                ...++..+..+++...  +.+......+.||||||++
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~--~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAH--VEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEE--EEEcCCCEEEEEEECCchH
Confidence            356799999999999999999999732                0112223445555433  4444445679999999999


Q ss_pred             hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeE-EEEEeCCCCcCccCcC---HHHHHHHHHHcC
Q 028466           70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVII-VLVGNKTDLVDKRQVS---IEEGEAKARELN  145 (208)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i-ivv~nK~D~~~~~~~~---~~~~~~~~~~~~  145 (208)
                      +|..........+|++++|+|+...-. ....+.+..+..   .+.|. ++++||+|+.+..+..   ..+++.++..++
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~  162 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence            998777777889999999999986311 112233333332   24564 4678999986532211   235566666654


Q ss_pred             -----CeEEEeecCCCC
Q 028466          146 -----VMFIETSAKAGF  157 (208)
Q Consensus       146 -----~~~~~~S~~~~~  157 (208)
                           ++++++|+.++.
T Consensus       163 ~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       163 FPGDDTPIIRGSALKAL  179 (394)
T ss_pred             CCccCccEEECcccccc
Confidence                 689999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.77  E-value=1.5e-17  Score=118.29  Aligned_cols=159  Identities=21%  Similarity=0.222  Sum_probs=107.0

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCC----------chhhccchh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSLIP   76 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~   76 (208)
                      .....|+++|.+|||||||||+|++.+-......+.+.+.....+.+++   .+.++|.||          .+.+..+..
T Consensus        22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~~~i~   98 (200)
T COG0218          22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWKKLIE   98 (200)
T ss_pred             CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHHHHHH
Confidence            3557899999999999999999999774333344555555556666666   378999999          334555666


Q ss_pred             hhhcc---CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCH--HHHHHHHH-HcCCe--E
Q 028466           77 SYIRD---SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSI--EEGEAKAR-ELNVM--F  148 (208)
Q Consensus        77 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~--~~~~~~~~-~~~~~--~  148 (208)
                      .|++.   -.++++++|+..+-  ......+..+...  .+.|++|++||+|.....+...  ..+.+... .....  +
T Consensus        99 ~YL~~R~~L~~vvlliD~r~~~--~~~D~em~~~l~~--~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~  174 (200)
T COG0218          99 EYLEKRANLKGVVLLIDARHPP--KDLDREMIEFLLE--LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWV  174 (200)
T ss_pred             HHHhhchhheEEEEEEECCCCC--cHHHHHHHHHHHH--cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceE
Confidence            67664   46888899987542  2222223333333  2599999999999876433221  22221111 12222  8


Q ss_pred             EEeecCCCCCHHHHHHHHHHHcCC
Q 028466          149 IETSAKAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       149 ~~~S~~~~~~v~~~~~~l~~~~~~  172 (208)
                      +.+|+..+.|++++...|.+.+..
T Consensus       175 ~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         175 VLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             EEEecccccCHHHHHHHHHHHhhc
Confidence            889999999999999999988753

>PRK12735 elongation factor Tu; Reviewed

Probab=99.77  E-value=2.4e-17  Score=132.55  Aligned_cols=159  Identities=17%  Similarity=0.161  Sum_probs=107.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcC-------CC---------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYD-------KF---------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (208)
                      .+.++|+++|+.++|||||+++|++.       .+         ..+..+..+++....  .+.....++.|+||||+..
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~--~~~~~~~~i~~iDtPGh~~   87 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHV--EYETANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeee--EEcCCCcEEEEEECCCHHH
Confidence            45799999999999999999999852       10         112234444444333  3333445789999999999


Q ss_pred             hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEE-EEEeCCCCcCccCc---CHHHHHHHHHHcC-
Q 028466           71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIV-LVGNKTDLVDKRQV---SIEEGEAKARELN-  145 (208)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~~~~~~~---~~~~~~~~~~~~~-  145 (208)
                      |.......+..+|++++|+|+.+.. ..+..+++..+..   .++|.+ +++||+|+.+..+.   ...+++.++..++ 
T Consensus        88 f~~~~~~~~~~aD~~llVvda~~g~-~~qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~  163 (396)
T PRK12735         88 YVKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF  163 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCC-chhHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence            8887778888999999999998532 1222233333322   346754 57899999643221   1224555555543 


Q ss_pred             ----CeEEEeecCCCC----------CHHHHHHHHHHHcC
Q 028466          146 ----VMFIETSAKAGF----------NIKALFRKIAAALP  171 (208)
Q Consensus       146 ----~~~~~~S~~~~~----------~v~~~~~~l~~~~~  171 (208)
                          ++++++|+.++.          ++..+++.|...++
T Consensus       164 ~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        164 PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence                679999999984          67888888887765

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.77  E-value=2.6e-17  Score=131.86  Aligned_cols=160  Identities=19%  Similarity=0.267  Sum_probs=123.6

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECC-eEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      .+..-|.++|+-..|||||+..+............+|..+....+..+. ....++|+|||||+.|..+..+...-+|++
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa   82 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA   82 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence            3557799999999999999999998888777777777777777776652 224699999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC---------CeEEEeecCCC
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN---------VMFIETSAKAG  156 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~S~~~~  156 (208)
                      |+|+++.+.  +.  .+..+.+......++|++|.+||+|..+.   +.........+++         ..++++||++|
T Consensus        83 ILVVa~dDG--v~--pQTiEAI~hak~a~vP~iVAiNKiDk~~~---np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg  155 (509)
T COG0532          83 ILVVAADDG--VM--PQTIEAINHAKAAGVPIVVAINKIDKPEA---NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTG  155 (509)
T ss_pred             EEEEEccCC--cc--hhHHHHHHHHHHCCCCEEEEEecccCCCC---CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCC
Confidence            999999863  22  22233344444467999999999999743   3444444444443         46899999999


Q ss_pred             CCHHHHHHHHHHHcCCC
Q 028466          157 FNIKALFRKIAAALPGM  173 (208)
Q Consensus       157 ~~v~~~~~~l~~~~~~~  173 (208)
                      +|+.++++.+.-.....
T Consensus       156 ~Gi~eLL~~ill~aev~  172 (509)
T COG0532         156 EGIDELLELILLLAEVL  172 (509)
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999988665433

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.76  E-value=5.1e-18  Score=136.45  Aligned_cols=168  Identities=26%  Similarity=0.355  Sum_probs=125.7

Q ss_pred             CCCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhc
Q 028466            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (208)
Q Consensus         1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   80 (208)
                      |+....++.+||+++|..|+||||||-.++...+++...+-...-.....  .....+..+|+|++....-+......++
T Consensus         1 ~~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPad--vtPe~vpt~ivD~ss~~~~~~~l~~Eir   78 (625)
T KOG1707|consen    1 MSDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPAD--VTPENVPTSIVDTSSDSDDRLCLRKEIR   78 (625)
T ss_pred             CCCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCc--cCcCcCceEEEecccccchhHHHHHHHh
Confidence            56667788999999999999999999999999997665443322112222  2233356899999866555555677799


Q ss_pred             cCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcC--CCCeEEEEEeCCCCcCccCcCHHH-HHHHHHHcC-C-eEEEeecC
Q 028466           81 DSSVAVIVYDVASRQSFLNT-TKWVEEVRTERG--SDVIIVLVGNKTDLVDKRQVSIEE-GEAKARELN-V-MFIETSAK  154 (208)
Q Consensus        81 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~-~~~~~~~~~-~-~~~~~S~~  154 (208)
                      .+|++++||+.+++++++.+ ..|+-.+++..+  .++|+|+|+||.|.........+. ..-...++. + ..+++||+
T Consensus        79 kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~  158 (625)
T KOG1707|consen   79 KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSAL  158 (625)
T ss_pred             hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhh
Confidence            99999999999999999995 678888887664  679999999999997665542222 233333332 2 57899999


Q ss_pred             CCCCHHHHHHHHHHHc
Q 028466          155 AGFNIKALFRKIAAAL  170 (208)
Q Consensus       155 ~~~~v~~~~~~l~~~~  170 (208)
                      +-.++.++|-.-.+.+
T Consensus       159 ~~~n~~e~fYyaqKaV  174 (625)
T KOG1707|consen  159 TLANVSELFYYAQKAV  174 (625)
T ss_pred             hhhhhHhhhhhhhhee
Confidence            9999999998877664

>CHL00071 tufA elongation factor Tu

Probab=99.76  E-value=3.3e-17  Score=132.27  Aligned_cols=146  Identities=16%  Similarity=0.148  Sum_probs=98.9

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCC----------------CCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDK----------------FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (208)
                      .+.++|+++|+.++|||||+++|++..                ...+..+..+++.....  +.....++.++||||+..
T Consensus        10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~--~~~~~~~~~~iDtPGh~~   87 (409)
T CHL00071         10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVE--YETENRHYAHVDCPGHAD   87 (409)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEE--EccCCeEEEEEECCChHH
Confidence            457999999999999999999998531                11223344444444333  333345788999999999


Q ss_pred             hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccCc---CHHHHHHHHHHcC-
Q 028466           71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQV---SIEEGEAKARELN-  145 (208)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~---~~~~~~~~~~~~~-  145 (208)
                      |.......+..+|++++|+|+...- ..+..+.+..+..   .+.| +|+++||+|+.+..+.   ...++..++...+ 
T Consensus        88 ~~~~~~~~~~~~D~~ilVvda~~g~-~~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~  163 (409)
T CHL00071         88 YVKNMITGAAQMDGAILVVSAADGP-MPQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF  163 (409)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCC-cHHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            8888888889999999999998531 1222333333332   2467 7788999999753221   1234555555543 


Q ss_pred             ----CeEEEeecCCCCC
Q 028466          146 ----VMFIETSAKAGFN  158 (208)
Q Consensus       146 ----~~~~~~S~~~~~~  158 (208)
                          ++++++|+.++.+
T Consensus       164 ~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        164 PGDDIPIVSGSALLALE  180 (409)
T ss_pred             CCCcceEEEcchhhccc
Confidence                6899999998863

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.76  E-value=1.1e-17  Score=134.94  Aligned_cols=147  Identities=24%  Similarity=0.273  Sum_probs=97.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCC---------------------------------CCCccceeeeeeeEEEEEECCe
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKF---------------------------------DNTYQATIGIDFLSKTMYLEDR   56 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~   56 (208)
                      ++|+++|+.++|||||+++|+...-                                 .++..+..+++.....+..++ 
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~-   79 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK-   79 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence            5899999999999999999862210                                 112233444555555554544 


Q ss_pred             EEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCH--
Q 028466           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSI--  134 (208)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~--  134 (208)
                       .++.|+||||++.|.......+..+|++++|+|+...-.. +..+.+..+. ..+ ..++++++||+|+....+...  
T Consensus        80 -~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~-qt~~~~~~~~-~~~-~~~iivviNK~D~~~~~~~~~~~  155 (406)
T TIGR02034        80 -RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLE-QTRRHSYIAS-LLG-IRHVVLAVNKMDLVDYDEEVFEN  155 (406)
T ss_pred             -eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcc-ccHHHHHHHH-HcC-CCcEEEEEEecccccchHHHHHH
Confidence             5799999999999987777788999999999999853211 1122222222 222 245888999999864332212  


Q ss_pred             --HHHHHHHHHcC---CeEEEeecCCCCCHHH
Q 028466          135 --EEGEAKARELN---VMFIETSAKAGFNIKA  161 (208)
Q Consensus       135 --~~~~~~~~~~~---~~~~~~S~~~~~~v~~  161 (208)
                        .+...+....+   ++++++|+++|+|+.+
T Consensus       156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence              22233334333   4699999999999885

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.76  E-value=2e-17  Score=123.06  Aligned_cols=155  Identities=14%  Similarity=0.162  Sum_probs=97.7

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCcc--------------ceeeeeeeEEEE----------------------EEC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQ--------------ATIGIDFLSKTM----------------------YLE   54 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~--------------~~~~~~~~~~~~----------------------~~~   54 (208)
                      ||+++|+.++|||||+++|..+.+.....              ...+.......+                      .+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            68999999999999999999765533211              111110000000                      011


Q ss_pred             CeEEEEEEEecCCchhhccchhhhhc--cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc
Q 028466           55 DRTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV  132 (208)
Q Consensus        55 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~  132 (208)
                      .....+.++||||++.|.......+.  .+|++++|+|+..+.. ....+++..+..   .+.|+++|+||+|+.+....
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~  156 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVTKIDLAPANIL  156 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence            12357899999999999776665554  6899999999975322 222333333332   34789999999998543221


Q ss_pred             --CHHHHHHHHHH--------------------------cCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466          133 --SIEEGEAKARE--------------------------LNVMFIETSAKAGFNIKALFRKIAAA  169 (208)
Q Consensus       133 --~~~~~~~~~~~--------------------------~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (208)
                        ...++.+....                          ..++++.+|+.+|+|+++++..|...
T Consensus       157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l  221 (224)
T cd04165         157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL  221 (224)
T ss_pred             HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence              12222222221                          12489999999999999999888654

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>COG2262 HflX GTPases [General function prediction only]

Probab=99.75  E-value=6.3e-17  Score=125.98  Aligned_cols=158  Identities=20%  Similarity=0.220  Sum_probs=117.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCch---------hhccchhhhh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLIPSYI   79 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~   79 (208)
                      -..|.++|-.|+|||||+|+|++...........|.+.....+.+.+. ..+.+.||.|.-         .|.+... ..
T Consensus       192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g-~~vlLtDTVGFI~~LP~~LV~AFksTLE-E~  269 (411)
T COG2262         192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDG-RKVLLTDTVGFIRDLPHPLVEAFKSTLE-EV  269 (411)
T ss_pred             CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCC-ceEEEecCccCcccCChHHHHHHHHHHH-Hh
Confidence            468999999999999999999977766555666667777777777653 479999999922         2333332 36


Q ss_pred             ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCH
Q 028466           80 RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNI  159 (208)
Q Consensus        80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v  159 (208)
                      ..+|+++.|+|+++|.....+......+.......+|+|+|.||+|+..+..     ....+....-..+.+||++++|+
T Consensus       270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~~~gl  344 (411)
T COG2262         270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKTGEGL  344 (411)
T ss_pred             hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEeccCcCH
Confidence            7899999999999997666666666666655446699999999999865433     11111111115899999999999


Q ss_pred             HHHHHHHHHHcCCC
Q 028466          160 KALFRKIAAALPGM  173 (208)
Q Consensus       160 ~~~~~~l~~~~~~~  173 (208)
                      +.+++.|.+.+...
T Consensus       345 ~~L~~~i~~~l~~~  358 (411)
T COG2262         345 DLLRERIIELLSGL  358 (411)
T ss_pred             HHHHHHHHHHhhhc
Confidence            99999999988644

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.75  E-value=4.6e-17  Score=122.48  Aligned_cols=155  Identities=17%  Similarity=0.182  Sum_probs=114.9

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh-------ccchhhhhccCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRDSS   83 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~d   83 (208)
                      .+.+||.||+|||||++.+...+......+..|......++.++... .+++-|.||.-+-       .....+.+..++
T Consensus       198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~  276 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCK  276 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhc
Confidence            57899999999999999999777654444555555555566666544 5999999995432       223345577899


Q ss_pred             EEEEEEeCCCh---hhHHhHHHHHHHHHhhcC--CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC-CeEEEeecCCCC
Q 028466           84 VAVIVYDVASR---QSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN-VMFIETSAKAGF  157 (208)
Q Consensus        84 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~  157 (208)
                      +++||+|++.+   ..+++++....++..+..  .+.|.++|+||+|+.+..   ...+.++++.+. .+++++||+.++
T Consensus       277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~e  353 (366)
T KOG1489|consen  277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSGE  353 (366)
T ss_pred             eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeecccc
Confidence            99999999987   777777776666655443  678899999999985322   223456666554 469999999999


Q ss_pred             CHHHHHHHHHHH
Q 028466          158 NIKALFRKIAAA  169 (208)
Q Consensus       158 ~v~~~~~~l~~~  169 (208)
                      ++.++++.|.+.
T Consensus       354 gl~~ll~~lr~~  365 (366)
T KOG1489|consen  354 GLEELLNGLREL  365 (366)
T ss_pred             chHHHHHHHhhc
Confidence            999999988764

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.75  E-value=6.8e-17  Score=122.37  Aligned_cols=159  Identities=21%  Similarity=0.194  Sum_probs=114.7

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh-----hcc---chhh
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-----FRS---LIPS   77 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----~~~---~~~~   77 (208)
                      ++....|+|.|.||||||||++.+++-+..-...|..|..+....+..+.  .+++++||||.-+     ...   ....
T Consensus       165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~  242 (346)
T COG1084         165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAIL  242 (346)
T ss_pred             CCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHH
Confidence            34567899999999999999999998888655566666666666665554  5799999999332     111   1111


Q ss_pred             hhc-cCCEEEEEEeCCC--hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeec
Q 028466           78 YIR-DSSVAVIVYDVAS--RQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSA  153 (208)
Q Consensus        78 ~~~-~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~  153 (208)
                      .++ -.++++|++|++.  ..+.+.+...+..+.....  .|+++|+||.|+.+....  .++.......+. ....+++
T Consensus       243 AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~  318 (346)
T COG1084         243 ALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISA  318 (346)
T ss_pred             HHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHH--HHHHHHHHhhccccccceee
Confidence            222 3688999999984  5677888888888887764  899999999998654333  333333444443 4788899


Q ss_pred             CCCCCHHHHHHHHHHHc
Q 028466          154 KAGFNIKALFRKIAAAL  170 (208)
Q Consensus       154 ~~~~~v~~~~~~l~~~~  170 (208)
                      ..+.+++.+...+....
T Consensus       319 ~~~~~~d~~~~~v~~~a  335 (346)
T COG1084         319 TKGCGLDKLREEVRKTA  335 (346)
T ss_pred             eehhhHHHHHHHHHHHh
Confidence            99999998888887774

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.75  E-value=2.5e-17  Score=134.80  Aligned_cols=151  Identities=23%  Similarity=0.261  Sum_probs=98.3

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCC--C-------------------------------CCccceeeeeeeEEEEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--D-------------------------------NTYQATIGIDFLSKTMYL   53 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~--~-------------------------------~~~~~~~~~~~~~~~~~~   53 (208)
                      ...++|+++|+.++|||||+++|+...-  .                               ++..+.++++.....+..
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            4579999999999999999999873311  0                               111223445554444444


Q ss_pred             CCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC
Q 028466           54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS  133 (208)
Q Consensus        54 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~  133 (208)
                      +  ..++.|+||||++.|.......+..+|++++|+|+...-. .+..+.+. +....+ ..++++++||+|+....+..
T Consensus       105 ~--~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~-~qt~~~~~-l~~~lg-~~~iIvvvNKiD~~~~~~~~  179 (474)
T PRK05124        105 E--KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVL-DQTRRHSF-IATLLG-IKHLVVAVNKMDLVDYSEEV  179 (474)
T ss_pred             C--CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-ccchHHHH-HHHHhC-CCceEEEEEeeccccchhHH
Confidence            4  3579999999999987777777899999999999975311 11111111 222222 24688899999996433222


Q ss_pred             HHHHH----HHHHHc----CCeEEEeecCCCCCHHHH
Q 028466          134 IEEGE----AKAREL----NVMFIETSAKAGFNIKAL  162 (208)
Q Consensus       134 ~~~~~----~~~~~~----~~~~~~~S~~~~~~v~~~  162 (208)
                      ..++.    .+....    .++++++|+++++|+.++
T Consensus       180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            22222    222332    368999999999998764

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.75  E-value=3.3e-17  Score=121.43  Aligned_cols=158  Identities=20%  Similarity=0.284  Sum_probs=100.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCc-cceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-----chhhhhccCCE
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----LIPSYIRDSSV   84 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~   84 (208)
                      ||+++|+.++||||+.+.+..+-.+.+. .-..|.+.....+...+ ...+.+||+||+..+..     .....++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~-~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLS-FLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTT-SCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCC-CcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            7999999999999999988877554332 22334444444444333 25899999999875544     35667899999


Q ss_pred             EEEEEeCCChhh---HHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC------cCHHHHHHHHHHcC---CeEEEee
Q 028466           85 AVIVYDVASRQS---FLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ------VSIEEGEAKARELN---VMFIETS  152 (208)
Q Consensus        85 ~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~------~~~~~~~~~~~~~~---~~~~~~S  152 (208)
                      +|+|+|+.+.+.   +..+...+..+.+. .++..+.++++|+|+..+..      ....++...+...+   +.++.+|
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS  158 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS  158 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence            999999984333   33334444444433 36788999999999864321      11334445555556   7899999


Q ss_pred             cCCCCCHHHHHHHHHHHcC
Q 028466          153 AKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       153 ~~~~~~v~~~~~~l~~~~~  171 (208)
                      .++ +.+-++|..+.+.+-
T Consensus       159 I~D-~Sly~A~S~Ivq~Li  176 (232)
T PF04670_consen  159 IWD-ESLYEAWSKIVQKLI  176 (232)
T ss_dssp             TTS-THHHHHHHHHHHTTS
T ss_pred             CcC-cHHHHHHHHHHHHHc
Confidence            999 578888888777764

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.75  E-value=3.1e-17  Score=133.28  Aligned_cols=149  Identities=18%  Similarity=0.240  Sum_probs=102.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCC-------------------------------CCCCccceeeeeeeEEEEEECC
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDK-------------------------------FDNTYQATIGIDFLSKTMYLED   55 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   55 (208)
                      -+.++|+++|+.++|||||+.+|+...                               ..++.....+++.....  +..
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~--~~~   82 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWK--FET   82 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEE--ecC
Confidence            346899999999999999999886310                               01223334444444433  444


Q ss_pred             eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHH-------hHHHHHHHHHhhcCCCC-eEEEEEeCCCCc
Q 028466           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFL-------NTTKWVEEVRTERGSDV-IIVLVGNKTDLV  127 (208)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~-~iivv~nK~D~~  127 (208)
                      ..+.++++|+|||++|.......+..+|++|+|+|+.+ ..++       +..+.+..+..   .++ ++|+++||+|+.
T Consensus        83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~  158 (447)
T PLN00043         83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDAT  158 (447)
T ss_pred             CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCC
Confidence            45789999999999999999999999999999999986 2332       23333222222   245 478889999985


Q ss_pred             Cc--cC----cCHHHHHHHHHHcC-----CeEEEeecCCCCCHHH
Q 028466          128 DK--RQ----VSIEEGEAKARELN-----VMFIETSAKAGFNIKA  161 (208)
Q Consensus       128 ~~--~~----~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~  161 (208)
                      +.  .+    ....+++.++...+     ++++++|+++|+|+.+
T Consensus       159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            21  11    12345566666655     6799999999999853

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.74  E-value=1.3e-16  Score=119.56  Aligned_cols=165  Identities=17%  Similarity=0.198  Sum_probs=106.5

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh------------hcc
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER------------FRS   73 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------------~~~   73 (208)
                      +-+-+.|+|+|.||+|||||.|.+++.+.........++....--+ +.....++.|+||||.-.            +..
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq  147 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ  147 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence            4578999999999999999999999998866554444433333223 334446899999999221            111


Q ss_pred             chhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc-------------CcCH--HHHH
Q 028466           74 LIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR-------------QVSI--EEGE  138 (208)
Q Consensus        74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-------------~~~~--~~~~  138 (208)
                      .....+..+|.+++|+|+++...... ...+..+..+.  +.|-++|.||.|.....             +...  .+..
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~  224 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ  224 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence            33455778999999999996322111 11222233232  48889999999975321             1111  1111


Q ss_pred             HHHHHc--------------CCeEEEeecCCCCCHHHHHHHHHHHcCCCc
Q 028466          139 AKAREL--------------NVMFIETSAKAGFNIKALFRKIAAALPGME  174 (208)
Q Consensus       139 ~~~~~~--------------~~~~~~~S~~~~~~v~~~~~~l~~~~~~~~  174 (208)
                      +.....              +-.+|.+||++|+|++++.++|....+..+
T Consensus       225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp  274 (379)
T KOG1423|consen  225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP  274 (379)
T ss_pred             HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence            111111              114899999999999999999998875443

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.74  E-value=7.4e-17  Score=130.88  Aligned_cols=167  Identities=17%  Similarity=0.147  Sum_probs=111.6

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcCCC---CCCccceeeeeeeEEEEE---------------ECC-----------
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLSKTMY---------------LED-----------   55 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~---------------~~~-----------   55 (208)
                      .....++|.++|+-..|||||+.+|++-..   .++..+.++++.......               ...           
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            335679999999999999999999986433   334444444433322110               000           


Q ss_pred             -----eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466           56 -----RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR  130 (208)
Q Consensus        56 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~  130 (208)
                           ....+.|+|+||++.|.......+..+|++++|+|+..+....+..+.+. +....+ -.++|+|+||+|+.+..
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lg-i~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIMK-LKHIIILQNKIDLVKEA  187 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHcC-CCcEEEEEecccccCHH
Confidence                 02368999999999998888888899999999999985311222233332 222222 24688899999996432


Q ss_pred             C--cCHHHHHHHHHH---cCCeEEEeecCCCCCHHHHHHHHHHHcCCC
Q 028466          131 Q--VSIEEGEAKARE---LNVMFIETSAKAGFNIKALFRKIAAALPGM  173 (208)
Q Consensus       131 ~--~~~~~~~~~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~~~~~  173 (208)
                      .  ....+++.+...   .+.+++++|+++|+|++.+++.|.+.++..
T Consensus       188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~  235 (460)
T PTZ00327        188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP  235 (460)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence            1  112333443333   257899999999999999999999866543

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=4.6e-17  Score=126.70  Aligned_cols=154  Identities=24%  Similarity=0.326  Sum_probs=109.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcC-------------------------------CCCCCccceeeeeeeEEEEEECC
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYD-------------------------------KFDNTYQATIGIDFLSKTMYLED   55 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~   55 (208)
                      ...++++++|+..+|||||+-+|+..                               ...+++.++.+++.....+..+ 
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~-   83 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD-   83 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC-
Confidence            45699999999999999999998732                               1123344555555555555444 


Q ss_pred             eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChh---hH--HhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ---SF--LNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR  130 (208)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~  130 (208)
                       .+.++|+|+|||..|-......+.++|+.|+|+|+.+.+   +|  ..+......+....+ -..+||++||+|..+.+
T Consensus        84 -k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wd  161 (428)
T COG5256          84 -KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWD  161 (428)
T ss_pred             -CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccC
Confidence             478999999999999999988999999999999999753   11  112222222333333 24578888999998876


Q ss_pred             CcCHHHHHHHHHHc---------CCeEEEeecCCCCCHHHHH
Q 028466          131 QVSIEEGEAKAREL---------NVMFIETSAKAGFNIKALF  163 (208)
Q Consensus       131 ~~~~~~~~~~~~~~---------~~~~~~~S~~~~~~v~~~~  163 (208)
                      +..++++......+         ++.|+++|+..|+|+.+.-
T Consensus       162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s  203 (428)
T COG5256         162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS  203 (428)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC
Confidence            66666665544433         2579999999999987654

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.74  E-value=9.2e-17  Score=130.60  Aligned_cols=151  Identities=20%  Similarity=0.212  Sum_probs=100.7

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcC--C-----------------------------CCCCccceeeeeeeEEEEEEC
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYD--K-----------------------------FDNTYQATIGIDFLSKTMYLE   54 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~   54 (208)
                      ..+.++|+++|+.++|||||+.+|+..  .                             ..++..+..+++.....+.. 
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-   82 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-   82 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-
Confidence            345699999999999999999998741  0                             01223344455554444444 


Q ss_pred             CeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChh---hH---HhHHHHHHHHHhhcCCCCe-EEEEEeCCCCc
Q 028466           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ---SF---LNTTKWVEEVRTERGSDVI-IVLVGNKTDLV  127 (208)
Q Consensus        55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~  127 (208)
                       ..+.++|+|||||.+|.......+..+|++++|+|+....   .+   .+..+.+..+..   .++| +|+++||+|..
T Consensus        83 -~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~  158 (446)
T PTZ00141         83 -PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDK  158 (446)
T ss_pred             -CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccccc
Confidence             4468999999999999998888899999999999998531   11   123333333322   2455 67889999943


Q ss_pred             --CccCcCH----HHHHHHHHHc-----CCeEEEeecCCCCCHHH
Q 028466          128 --DKRQVSI----EEGEAKAREL-----NVMFIETSAKAGFNIKA  161 (208)
Q Consensus       128 --~~~~~~~----~~~~~~~~~~-----~~~~~~~S~~~~~~v~~  161 (208)
                        +..+...    .++...+...     .++++++|+.+|+|+.+
T Consensus       159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence              2222222    3334443333     35799999999999864

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=1e-16  Score=128.23  Aligned_cols=158  Identities=18%  Similarity=0.174  Sum_probs=124.0

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      ++..-|.|+|+-..|||||+..|...........+++..+....+....+ -.++|.|||||..|..+..+...-+|+++
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvV  229 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVV  229 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEE
Confidence            46678999999999999999999988887666677777777777766644 58999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC---------CeEEEeecCCCC
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN---------VMFIETSAKAGF  157 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~S~~~~~  157 (208)
                      +|+.+.|. -   +.+..+.+......++|++|.+||+|.++.   ..+.+.+....++         +.++++|+++|+
T Consensus       230 LVVAadDG-V---mpQT~EaIkhAk~A~VpiVvAinKiDkp~a---~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~  302 (683)
T KOG1145|consen  230 LVVAADDG-V---MPQTLEAIKHAKSANVPIVVAINKIDKPGA---NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE  302 (683)
T ss_pred             EEEEccCC-c---cHhHHHHHHHHHhcCCCEEEEEeccCCCCC---CHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence            99999873 1   222334444455568999999999997643   3445555555543         458999999999


Q ss_pred             CHHHHHHHHHHHcCC
Q 028466          158 NIKALFRKIAAALPG  172 (208)
Q Consensus       158 ~v~~~~~~l~~~~~~  172 (208)
                      |++.+.+.+.-...-
T Consensus       303 nl~~L~eaill~Ae~  317 (683)
T KOG1145|consen  303 NLDLLEEAILLLAEV  317 (683)
T ss_pred             ChHHHHHHHHHHHHH
Confidence            999999988766433

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.73  E-value=8e-17  Score=119.40  Aligned_cols=113  Identities=19%  Similarity=0.259  Sum_probs=79.3

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCC----------------CCCccceeeeeeeEEEEEEC--------CeEEEEEEEecC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLE--------DRTVRLQLWDTA   66 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~   66 (208)
                      +|+++|+.++|||||+++|+...-                ..+..+..+++.....+.+.        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            689999999999999999974321                01112233333333333343        336789999999


Q ss_pred             CchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466           67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV  127 (208)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~  127 (208)
                      |+..|......+++.+|++++|+|+.+...... ...+..+.   ..+.|+++|+||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~---~~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQAL---KERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHH---HcCCCEEEEEECCCcc
Confidence            999999999999999999999999986533332 22222222   2357899999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.73  E-value=1.2e-16  Score=117.00  Aligned_cols=156  Identities=15%  Similarity=0.198  Sum_probs=94.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeee---eeeEEEEEECCeEEEEEEEecCCchhhccchhhh-----hc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGI---DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----IR   80 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----~~   80 (208)
                      +++|+++|.+|+|||||+|.|++...........+.   ......+... ....+.+|||||..........+     +.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            479999999999999999999986654322222111   1111111111 12368999999976433322222     56


Q ss_pred             cCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCccC-----------cCHHHHHHHHH----Hc
Q 028466           81 DSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ-----------VSIEEGEAKAR----EL  144 (208)
Q Consensus        81 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-----------~~~~~~~~~~~----~~  144 (208)
                      .+|++++|.+.    .+... ..++..+...   +.|+++|+||+|+....+           ....++++.+.    ..
T Consensus        80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~  152 (197)
T cd04104          80 EYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA  152 (197)
T ss_pred             CcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence            78999998542    23333 3344444432   478999999999843111           11112222222    22


Q ss_pred             C---CeEEEeecC--CCCCHHHHHHHHHHHcCC
Q 028466          145 N---VMFIETSAK--AGFNIKALFRKIAAALPG  172 (208)
Q Consensus       145 ~---~~~~~~S~~--~~~~v~~~~~~l~~~~~~  172 (208)
                      +   ..+|.+|+.  .+-++..+.+.|...+++
T Consensus       153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~  185 (197)
T cd04104         153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA  185 (197)
T ss_pred             CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence            2   368999998  568999999999998865

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PLN03126 Elongation factor Tu; Provisional

Probab=99.72  E-value=3.4e-16  Score=127.85  Aligned_cols=145  Identities=17%  Similarity=0.135  Sum_probs=98.8

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCC----------------CCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDK----------------FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (208)
                      .+.++|+++|+.++|||||+++|++..                ...+..+..+++.....+..++  ..+.++|+||+++
T Consensus        79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh~~  156 (478)
T PLN03126         79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD  156 (478)
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCHHH
Confidence            456899999999999999999998521                1223334445544444444433  5789999999999


Q ss_pred             hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccCc---CHHHHHHHHHHc--
Q 028466           71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQV---SIEEGEAKAREL--  144 (208)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~---~~~~~~~~~~~~--  144 (208)
                      |.......+..+|++++|+|+.+.. ..+..+++..+..   .++| +++++||+|+.+..+.   ...++..++...  
T Consensus       157 f~~~~~~g~~~aD~ailVVda~~G~-~~qt~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~  232 (478)
T PLN03126        157 YVKNMITGAAQMDGAILVVSGADGP-MPQTKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF  232 (478)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence            9888888889999999999998542 2222333333332   2466 7788999999653221   122445555543  


Q ss_pred             ---CCeEEEeecCCCC
Q 028466          145 ---NVMFIETSAKAGF  157 (208)
Q Consensus       145 ---~~~~~~~S~~~~~  157 (208)
                         .++++++|+.++.
T Consensus       233 ~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        233 PGDDIPIISGSALLAL  248 (478)
T ss_pred             CcCcceEEEEEccccc
Confidence               4679999998874

>PRK00049 elongation factor Tu; Reviewed

Probab=99.72  E-value=4e-16  Score=125.46  Aligned_cols=159  Identities=17%  Similarity=0.164  Sum_probs=106.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCC----------------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (208)
                      .+.++|+++|+.++|||||+++|++...                .++..+..+++...  ..+.....++.++||||+.+
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~--~~~~~~~~~i~~iDtPG~~~   87 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAH--VEYETEKRHYAHVDCPGHAD   87 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeE--EEEcCCCeEEEEEECCCHHH
Confidence            4679999999999999999999986211                12224444555443  33433446789999999999


Q ss_pred             hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEE-EEEeCCCCcCccCc---CHHHHHHHHHHc--
Q 028466           71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIV-LVGNKTDLVDKRQV---SIEEGEAKAREL--  144 (208)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~~~~~~~---~~~~~~~~~~~~--  144 (208)
                      |.......+..+|++++|+|+..+- ......++..+..   .+.|.+ +++||+|+.+..+.   ...++..+....  
T Consensus        88 f~~~~~~~~~~aD~~llVVDa~~g~-~~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~  163 (396)
T PRK00049         88 YVKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF  163 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCC-chHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence            8888878889999999999998531 1222333333332   247765 57899999642221   122344444443  


Q ss_pred             ---CCeEEEeecCCCC----------CHHHHHHHHHHHcC
Q 028466          145 ---NVMFIETSAKAGF----------NIKALFRKIAAALP  171 (208)
Q Consensus       145 ---~~~~~~~S~~~~~----------~v~~~~~~l~~~~~  171 (208)
                         +++++++|++++.          ++..+++.|...++
T Consensus       164 ~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        164 PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence               3689999999875          46677777777654

>cd01850 CDC_Septin CDC/Septin

Probab=99.72  E-value=1.5e-16  Score=121.83  Aligned_cols=143  Identities=13%  Similarity=0.173  Sum_probs=95.4

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCC----------ccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc----
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL----   74 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----   74 (208)
                      .++|+|+|.+|+|||||+|+|++..+...          ..++.++......+..++..+.+.+|||||.......    
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~   83 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW   83 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence            58999999999999999999998876433          2344455556666677777789999999995432110    


Q ss_pred             ----------------------hhhhhc--cCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCc
Q 028466           75 ----------------------IPSYIR--DSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK  129 (208)
Q Consensus        75 ----------------------~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~  129 (208)
                                            ....+.  .+|+++++++.+.. .+... ...+..+.    ..+|+++|+||+|+...
T Consensus        84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~----~~v~vi~VinK~D~l~~  158 (276)
T cd01850          84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS----KRVNIIPVIAKADTLTP  158 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh----ccCCEEEEEECCCcCCH
Confidence                                  001223  36777777776641 12111 22233332    25899999999998652


Q ss_pred             --cCcCHHHHHHHHHHcCCeEEEeecCCC
Q 028466          130 --RQVSIEEGEAKARELNVMFIETSAKAG  156 (208)
Q Consensus       130 --~~~~~~~~~~~~~~~~~~~~~~S~~~~  156 (208)
                        .......+.+.+..+++.++.....+.
T Consensus       159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~~~  187 (276)
T cd01850         159 EELKEFKQRIMEDIEEHNIKIYKFPEDEE  187 (276)
T ss_pred             HHHHHHHHHHHHHHHHcCCceECCCCCcc
Confidence              233456677888888999998776443

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.72  E-value=9.7e-17  Score=136.14  Aligned_cols=151  Identities=25%  Similarity=0.275  Sum_probs=97.5

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCC--C-------------------------------CCccceeeeeeeEEEEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF--D-------------------------------NTYQATIGIDFLSKTMY   52 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~--~-------------------------------~~~~~~~~~~~~~~~~~   52 (208)
                      ....++|+++|++++|||||+++|+...-  .                               ++.....+++.....+.
T Consensus        21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~  100 (632)
T PRK05506         21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA  100 (632)
T ss_pred             CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence            34568999999999999999999984321  0                               01122334444444444


Q ss_pred             ECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc
Q 028466           53 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV  132 (208)
Q Consensus        53 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~  132 (208)
                      .++  .++.|+||||++.|.......+..+|++++|+|+...-. .+..+.+..+... + ..+++|++||+|+.+..+.
T Consensus       101 ~~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~~~~-~-~~~iivvvNK~D~~~~~~~  175 (632)
T PRK05506        101 TPK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSFIASLL-G-IRHVVLAVNKMDLVDYDQE  175 (632)
T ss_pred             cCC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHHHHh-C-CCeEEEEEEecccccchhH
Confidence            443  578899999999887766677899999999999975321 1112222222222 1 2578889999999642221


Q ss_pred             CHH----HHHHHHHHcC---CeEEEeecCCCCCHHH
Q 028466          133 SIE----EGEAKARELN---VMFIETSAKAGFNIKA  161 (208)
Q Consensus       133 ~~~----~~~~~~~~~~---~~~~~~S~~~~~~v~~  161 (208)
                      ...    ++..+...++   ++++++|+++|+|+.+
T Consensus       176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            122    2233334444   4699999999999874

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=2.2e-16  Score=126.39  Aligned_cols=168  Identities=18%  Similarity=0.220  Sum_probs=121.7

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcC---------------CCCCCccceeeeeeeEEEEEE-CCeEEEEEEEecCCchhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYD---------------KFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERF   71 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~---------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~   71 (208)
                      +--++.|+.+-..|||||..+|+..               +..-++++++|+.-....+.+ ++..+.++++|||||-+|
T Consensus        59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF  138 (650)
T KOG0462|consen   59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF  138 (650)
T ss_pred             hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence            4457899999999999999998722               112235566666555544433 356688999999999999


Q ss_pred             ccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc-CHHHHHHHHHHcCCeEEE
Q 028466           72 RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV-SIEEGEAKARELNVMFIE  150 (208)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~  150 (208)
                      ...+.+.+.-+|++++|+|++..-..+....++..+.    .+.-+|.|+||+|+..++.. -..++.+.+.....+.+.
T Consensus       139 s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~  214 (650)
T KOG0462|consen  139 SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIY  214 (650)
T ss_pred             cceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEE
Confidence            9999999999999999999996433333333433333    35778999999999765421 133344444444558999


Q ss_pred             eecCCCCCHHHHHHHHHHHcCCCccCCcc
Q 028466          151 TSAKAGFNIKALFRKIAAALPGMETLSST  179 (208)
Q Consensus       151 ~S~~~~~~v~~~~~~l~~~~~~~~~~~~~  179 (208)
                      +||++|-|++++++.|++.++.-......
T Consensus       215 vSAK~G~~v~~lL~AII~rVPpP~~~~d~  243 (650)
T KOG0462|consen  215 VSAKTGLNVEELLEAIIRRVPPPKGIRDA  243 (650)
T ss_pred             EEeccCccHHHHHHHHHhhCCCCCCCCCc
Confidence            99999999999999999999766554433

>cd04169 RF3 RF3 subfamily

Probab=99.72  E-value=4.9e-16  Score=118.53  Aligned_cols=116  Identities=24%  Similarity=0.280  Sum_probs=78.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCC-C----------------Cc---cceeeeeeeEEEEEECCeEEEEEEEecCCch
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFD-N----------------TY---QATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~-~----------------~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   69 (208)
                      -+|+|+|+.|+|||||+++|+...-. .                .+   +...++.+......+....+.+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            47999999999999999999742110 0                00   0011222333333344445789999999999


Q ss_pred             hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc
Q 028466           70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK  129 (208)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~  129 (208)
                      +|......+++.+|++|+|+|+++.-. .....++....   ..++|+++++||+|+...
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~---~~~~P~iivvNK~D~~~a  138 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCR---LRGIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHH---hcCCCEEEEEECCccCCC
Confidence            998888888999999999999986422 12223333222   236899999999998543

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.71  E-value=6.6e-16  Score=125.49  Aligned_cols=159  Identities=18%  Similarity=0.154  Sum_probs=103.7

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcC------C----------CCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYD------K----------FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (208)
                      .+.++|+++|+.++|||||+++|.+-      .          ..++..+..+++.....  +.....++.++||||+.+
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~--~~~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVE--YETAKRHYAHVDCPGHAD  136 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEE--EcCCCeEEEEEECCCccc
Confidence            35689999999999999999999621      1          11233355555554444  444446789999999999


Q ss_pred             hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccCcC---HHHHHHHHHHc--
Q 028466           71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQVS---IEEGEAKAREL--  144 (208)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~---~~~~~~~~~~~--  144 (208)
                      |.......+..+|++++|+|+.+.- ..+..+.+..+..   .+.| +|+++||+|+.+..+..   ..++..+...+  
T Consensus       137 f~~~~~~g~~~aD~allVVda~~g~-~~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~  212 (447)
T PLN03127        137 YVKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF  212 (447)
T ss_pred             hHHHHHHHHhhCCEEEEEEECCCCC-chhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence            8887777778899999999997532 1222333333322   2477 57789999997532211   11233333332  


Q ss_pred             ---CCeEEEeecC---CCCC-------HHHHHHHHHHHcC
Q 028466          145 ---NVMFIETSAK---AGFN-------IKALFRKIAAALP  171 (208)
Q Consensus       145 ---~~~~~~~S~~---~~~~-------v~~~~~~l~~~~~  171 (208)
                         .++++++|+.   ++.|       +..+++.|...++
T Consensus       213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence               2578888875   4544       6788888887765

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.71  E-value=4e-16  Score=119.13  Aligned_cols=112  Identities=21%  Similarity=0.274  Sum_probs=80.9

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC--C----------------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK--F----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   72 (208)
                      +|+++|++|+|||||+++|+...  .                +.+..+..+++.....+.+.+  +++++|||||+..|.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence            58999999999999999996311  0                122334555555555666655  679999999999999


Q ss_pred             cchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466           73 SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD  128 (208)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~  128 (208)
                      ..+..+++.+|++|+|+|+.+...- .....+..+..   .++|+++++||+|+..
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~~~---~~~p~ivviNK~D~~~  130 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEP-QTETVWRQADR---YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            8899999999999999999864211 12233333322   3588999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=1.5e-16  Score=121.98  Aligned_cols=152  Identities=14%  Similarity=0.176  Sum_probs=97.7

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCC------------------ccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNT------------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   72 (208)
                      +|+++|++|+|||||+++|+.......                  .....++......+.+++  +.+.+|||||+..|.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence            589999999999999999974321100                  011222222333344444  679999999999988


Q ss_pred             cchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHH-HHHHHHHcCCeE--E
Q 028466           73 SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEE-GEAKARELNVMF--I  149 (208)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~--~  149 (208)
                      ..+..++..+|++++|+|+++......... +..+.   ..+.|.++++||+|....   ...+ ...+...++..+  +
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~-~~~~~---~~~~p~iivvNK~D~~~~---~~~~~~~~l~~~~~~~~~~~  151 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTEKL-WEFAD---EAGIPRIIFINKMDRERA---DFDKTLAALQEAFGRPVVPL  151 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHHHH-HHHHH---HcCCCEEEEEECCccCCC---CHHHHHHHHHHHhCCCeEEE
Confidence            888889999999999999987543332222 22222   235889999999998643   2222 233333345443  4


Q ss_pred             EeecCCCCCHHHHHHHHHHHcC
Q 028466          150 ETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       150 ~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      .++..++.++..+.+.+.....
T Consensus       152 ~ip~~~~~~~~~~vd~~~~~~~  173 (268)
T cd04170         152 QLPIGEGDDFKGVVDLLTEKAY  173 (268)
T ss_pred             EecccCCCceeEEEEcccCEEE
Confidence            4556777777766666655543

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.69  E-value=1.1e-15  Score=126.44  Aligned_cols=117  Identities=23%  Similarity=0.277  Sum_probs=79.3

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhc--CCC------C---------C---CccceeeeeeeEEEEEECCeEEEEEEEecC
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMY--DKF------D---------N---TYQATIGIDFLSKTMYLEDRTVRLQLWDTA   66 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~--~~~------~---------~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   66 (208)
                      .+..+|+|+|+.++|||||.++|+.  +..      .         .   ..+...++.+......+....+.+++||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            3567999999999999999999963  110      0         0   001112223333333333344789999999


Q ss_pred             CchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466           67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV  127 (208)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~  127 (208)
                      |+.+|......+++.+|++|+|+|+++.-. .....++....   ..++|+++++||+|+.
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~---~~~iPiiv~iNK~D~~  144 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCR---LRDTPIFTFINKLDRD  144 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHH---hcCCCEEEEEECCccc
Confidence            999999888889999999999999986421 12233333322   2468999999999974

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.69  E-value=1.4e-15  Score=118.19  Aligned_cols=162  Identities=20%  Similarity=0.260  Sum_probs=100.1

Q ss_pred             EEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEE---------------------ECC-eEEEEEEEecCCc-
Q 028466           12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMY---------------------LED-RTVRLQLWDTAGQ-   68 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~G~-   68 (208)
                      |+++|.++||||||+|+|++........+..+++.......                     .++ ..+.+.+||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            57999999999999999998875422223333222221111                     122 3367999999997 


Q ss_pred             ---hhhccchhh---hhccCCEEEEEEeCCC---------------h-hhHHh----HHHH-------------------
Q 028466           69 ---ERFRSLIPS---YIRDSSVAVIVYDVAS---------------R-QSFLN----TTKW-------------------  103 (208)
Q Consensus        69 ---~~~~~~~~~---~~~~~d~~i~v~d~~~---------------~-~s~~~----~~~~-------------------  103 (208)
                         ..+..+...   .++++|++++|+|++.               | +.++.    +..|                   
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               334443333   5899999999999973               1 11111    1111                   


Q ss_pred             -----------H----------HHHHhh----------------------cCCCCeEEEEEeCCCCcCccCcCHHHHHHH
Q 028466          104 -----------V----------EEVRTE----------------------RGSDVIIVLVGNKTDLVDKRQVSIEEGEAK  140 (208)
Q Consensus       104 -----------~----------~~~~~~----------------------~~~~~~iivv~nK~D~~~~~~~~~~~~~~~  140 (208)
                                 +          ..+...                      ....+|+|+|+||.|+....+.    ....
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~----~~~l  236 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENN----ISKL  236 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHH----HHHH
Confidence                       0          000000                      0124699999999997532221    1112


Q ss_pred             HHHc-CCeEEEeecCCCCCHHHHHH-HHHHHcCCCccCC
Q 028466          141 AREL-NVMFIETSAKAGFNIKALFR-KIAAALPGMETLS  177 (208)
Q Consensus       141 ~~~~-~~~~~~~S~~~~~~v~~~~~-~l~~~~~~~~~~~  177 (208)
                      .... +..++.+||+.+.++.++.+ .+.+.+++.+...
T Consensus       237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~  275 (318)
T cd01899         237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFE  275 (318)
T ss_pred             HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCce
Confidence            1222 46899999999999999998 6999998765443

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.68  E-value=1.6e-15  Score=119.76  Aligned_cols=163  Identities=18%  Similarity=0.203  Sum_probs=122.3

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcC---------------CCCCCccceeeeeeeEEEEEE---CCeEEEEEEEecCCc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYD---------------KFDNTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQ   68 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~---------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~   68 (208)
                      .+--+..++.+-..|||||..|++..               ...-++++++|+......+.+   ++..|.++++|||||
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH   86 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   86 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence            34457788999999999999998732               112245667777666666655   347789999999999


Q ss_pred             hhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-HcCC-
Q 028466           69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-ELNV-  146 (208)
Q Consensus        69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~~~~-  146 (208)
                      -+|.-.+.+.+.-+.+.++|+|+++.=.-+.+...|..+.+    +.-++-|+||+|++...   .++.++... -.|+ 
T Consensus        87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Ad---pervk~eIe~~iGid  159 (603)
T COG0481          87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAAD---PERVKQEIEDIIGID  159 (603)
T ss_pred             cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCC---HHHHHHHHHHHhCCC
Confidence            99999999999999999999999965444445666665543    56688889999997543   233333333 3344 


Q ss_pred             --eEEEeecCCCCCHHHHHHHHHHHcCCCccC
Q 028466          147 --MFIETSAKAGFNIKALFRKIAAALPGMETL  176 (208)
Q Consensus       147 --~~~~~S~~~~~~v~~~~~~l~~~~~~~~~~  176 (208)
                        ..+.+||++|.|++++++.|.+.++.....
T Consensus       160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~  191 (603)
T COG0481         160 ASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGD  191 (603)
T ss_pred             cchheeEecccCCCHHHHHHHHHhhCCCCCCC
Confidence              578999999999999999999999766543

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=2.7e-16  Score=107.47  Aligned_cols=156  Identities=19%  Similarity=0.254  Sum_probs=116.1

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      +.=|++++|-.|+|||||++.|..+...+. .||.  ...+..+.+.+  .+++.+|.+||...+..+..|+..+|++++
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qh-vPTl--HPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~   93 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQH-VPTL--HPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY   93 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHcccccccc-CCCc--CCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence            446899999999999999999986655322 2221  12233344544  679999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc--------------C---CeEE
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL--------------N---VMFI  149 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~--------------~---~~~~  149 (208)
                      .+|+-|.+.+.+.+..++.+.... -.++|+++.+||+|...+.  .+++.+....-+              +   +.++
T Consensus        94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf  171 (193)
T KOG0077|consen   94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF  171 (193)
T ss_pred             eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence            999999999999888777766544 3679999999999986543  233322221111              1   2478


Q ss_pred             EeecCCCCCHHHHHHHHHHHc
Q 028466          150 ETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       150 ~~S~~~~~~v~~~~~~l~~~~  170 (208)
                      .+|...+.+.-+.|.|+...+
T Consensus       172 mcsi~~~~gy~e~fkwl~qyi  192 (193)
T KOG0077|consen  172 MCSIVRKMGYGEGFKWLSQYI  192 (193)
T ss_pred             EEEEEccCccceeeeehhhhc
Confidence            889999999888888887665

>PRK13351 elongation factor G; Reviewed

Probab=99.68  E-value=1.2e-15  Score=130.73  Aligned_cols=116  Identities=21%  Similarity=0.297  Sum_probs=82.8

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCC--------C-----C-----CccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--------D-----N-----TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~--------~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (208)
                      .+..+|+|+|+.|+|||||+++|+...-        .     .     +.....++......+.+.+  +.+.+|||||+
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~   83 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTPGH   83 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECCCc
Confidence            4568999999999999999999974311        0     0     0112223333334444544  68999999999


Q ss_pred             hhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466           69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD  128 (208)
Q Consensus        69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~  128 (208)
                      .+|...+..+++.+|++|+|+|+++.........| ..+..   .++|+++++||+|+..
T Consensus        84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~  139 (687)
T PRK13351         84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence            99999999999999999999999876444433333 22322   3689999999999853

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.68  E-value=2.2e-15  Score=101.09  Aligned_cols=106  Identities=20%  Similarity=0.262  Sum_probs=70.0

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCC-CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh---------ccchhhhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPSYIR   80 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~   80 (208)
                      +|+|+|.+|+|||||+|+|++.+. .....+..+.......+.+++.  .+.++||||...-         .......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            689999999999999999998643 2222334444444455556664  4679999995421         112333458


Q ss_pred             cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeC
Q 028466           81 DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK  123 (208)
Q Consensus        81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK  123 (208)
                      .+|++++|+|++++.. +.....+..+.    .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            8999999999876311 22233333342    46999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.67  E-value=1.6e-16  Score=113.07  Aligned_cols=118  Identities=17%  Similarity=0.332  Sum_probs=74.4

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEE-CCeEEEEEEEecCCchhhccchhhh---hccCC
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSY---IRDSS   83 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~---~~~~d   83 (208)
                      +.-.|+|+|+.|+|||+|+.+|..+...+...+. ....   .... ......+.++|+|||++.+......   ...+.
T Consensus         2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k   77 (181)
T PF09439_consen    2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAK   77 (181)
T ss_dssp             ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEE
T ss_pred             CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCC
Confidence            3457999999999999999999998665443333 1111   1111 1222368999999999988765554   88999


Q ss_pred             EEEEEEeCCC-hhhHHhHHHHHHHHHhhc---CCCCeEEEEEeCCCCcCc
Q 028466           84 VAVIVYDVAS-RQSFLNTTKWVEEVRTER---GSDVIIVLVGNKTDLVDK  129 (208)
Q Consensus        84 ~~i~v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~  129 (208)
                      ++|||+|.+. ...+....+++..+....   ...+|++|++||.|+...
T Consensus        78 ~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   78 GIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            9999999974 445666555555554332   367899999999998654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.67  E-value=6.3e-15  Score=111.51  Aligned_cols=154  Identities=23%  Similarity=0.242  Sum_probs=110.9

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh-------hccchhhhhc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIR   80 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~   80 (208)
                      -.-.++++|+|++|||||++.|++-+......+..|.+.....+.+++  .+++++|+||.-.       ........++
T Consensus        62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R  139 (365)
T COG1163          62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR  139 (365)
T ss_pred             CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence            356899999999999999999998877655567777778888888887  6799999998331       2234566789


Q ss_pred             cCCEEEEEEeCCChhh-HHhHHHHHHHHHhh-------------------------------------------------
Q 028466           81 DSSVAVIVYDVASRQS-FLNTTKWVEEVRTE-------------------------------------------------  110 (208)
Q Consensus        81 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~-------------------------------------------------  110 (208)
                      +||++|+|+|+..+.. .+.+...+...--.                                                 
T Consensus       140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~  219 (365)
T COG1163         140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL  219 (365)
T ss_pred             cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence            9999999999985443 32232222221100                                                 


Q ss_pred             ----------------cCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHHc
Q 028466          111 ----------------RGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       111 ----------------~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~  170 (208)
                                      .-..+|.++|.||.|+..     .++...+.+..  ..+.+||+.+.|++++.+.|.+.+
T Consensus       220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             EecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence                            001246788889999865     22333343333  789999999999999999999987

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.67  E-value=1.4e-15  Score=115.78  Aligned_cols=163  Identities=17%  Similarity=0.094  Sum_probs=110.2

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh-------hccchhhhhccCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRDSS   83 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~d   83 (208)
                      -|.+||.|++|||||++.+..-+..-...+..|....--.+.... ...+.+-|.||.-+       ......+.+..+-
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            367899999999999999997766544445555544444444432 23699999999432       2223344567789


Q ss_pred             EEEEEEeCCChhh---HHhHHHHHHHHHhhc--CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCe-EEEeecCCCC
Q 028466           84 VAVIVYDVASRQS---FLNTTKWVEEVRTER--GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVM-FIETSAKAGF  157 (208)
Q Consensus        84 ~~i~v~d~~~~~s---~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~  157 (208)
                      ++++|+|++..+.   .+.......++..+.  ..+.|.+||+||+|+....+......+.+....+.. ++.+|+.++.
T Consensus       240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~  319 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTRE  319 (369)
T ss_pred             eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhccc
Confidence            9999999985332   333344444444332  257899999999997655554444455555555532 2239999999


Q ss_pred             CHHHHHHHHHHHcCCCc
Q 028466          158 NIKALFRKIAAALPGME  174 (208)
Q Consensus       158 ~v~~~~~~l~~~~~~~~  174 (208)
                      |++++...+.+.+....
T Consensus       320 g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         320 GLDELLRALAELLEETK  336 (369)
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999999887665

>TIGR00503 prfC peptide chain release factor 3

Probab=99.66  E-value=4.2e-15  Score=122.94  Aligned_cols=116  Identities=22%  Similarity=0.244  Sum_probs=80.4

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhc-CCCCC-------------------CccceeeeeeeEEEEEECCeEEEEEEEecC
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMY-DKFDN-------------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTA   66 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   66 (208)
                      .+..+|+|+|+.++|||||+++|+. .....                   ..+...++.+......++...+.+.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            4567999999999999999999862 11100                   011122333334334444445789999999


Q ss_pred             CchhhccchhhhhccCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466           67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLV  127 (208)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~  127 (208)
                      |+..|......+++.+|++|+|+|+++.  ++. ...++.... .  .++|+++++||+|+.
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~-~--~~~PiivviNKiD~~  145 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVTR-L--RDTPIFTFMNKLDRD  145 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHH-h--cCCCEEEEEECcccc
Confidence            9999988888889999999999999863  222 233333222 2  468999999999984

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.65  E-value=9.8e-15  Score=106.88  Aligned_cols=159  Identities=13%  Similarity=0.129  Sum_probs=100.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCc--cceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-------ch----h
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTY--QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LI----P   76 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~----~   76 (208)
                      ++|+++|.+|+|||||+|.+++.......  .+..+.+.......+++  ..+.++||||......       ..    .
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            47999999999999999999987654322  22334444444444544  4799999999654321       11    1


Q ss_pred             hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCC--CCeEEEEEeCCCCcCccCc------CHHHHHHHHHHcCCeE
Q 028466           77 SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS--DVIIVLVGNKTDLVDKRQV------SIEEGEAKARELNVMF  148 (208)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~  148 (208)
                      ....+.|++++|+++.+. +- .....+..+....+.  -.++++|.|+.|.......      .....+......+..+
T Consensus        79 ~~~~g~~~illVi~~~~~-t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGRF-TE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCCc-CH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            124578999999998762 11 122333444433331  2467888899986543211      1234455555556666


Q ss_pred             EEeec-----CCCCCHHHHHHHHHHHcCC
Q 028466          149 IETSA-----KAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       149 ~~~S~-----~~~~~v~~~~~~l~~~~~~  172 (208)
                      +.++.     ..+.++.++++.|.+++.+
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            66664     4567899999999998865

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK12739 elongation factor G; Reviewed

Probab=99.65  E-value=1.4e-14  Score=124.06  Aligned_cols=118  Identities=19%  Similarity=0.214  Sum_probs=85.6

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcCCC------------------CCCccceeeeeeeEEEEEECCeEEEEEEEecC
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKF------------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   66 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   66 (208)
                      ...+..+|+|+|+.++|||||+++|+...-                  ..+..+.++++.....+.+++  ++++++|||
T Consensus         4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTP   81 (691)
T PRK12739          4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTP   81 (691)
T ss_pred             CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCC
Confidence            344667899999999999999999974210                  112344566666666676755  679999999


Q ss_pred             CchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466           67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD  128 (208)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~  128 (208)
                      |+..|...+...++.+|++|+|+|+.+.-... ....+..+.   ..+.|+|+++||+|+..
T Consensus        82 G~~~f~~e~~~al~~~D~~ilVvDa~~g~~~q-t~~i~~~~~---~~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         82 GHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQ-SETVWRQAD---KYGVPRIVFVNKMDRIG  139 (691)
T ss_pred             CHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHH---HcCCCEEEEEECCCCCC
Confidence            99999888999999999999999998642221 122222222   23588899999999863

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=1.8e-15  Score=119.86  Aligned_cols=166  Identities=19%  Similarity=0.224  Sum_probs=112.1

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc---------chhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---------LIPS   77 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~   77 (208)
                      ..+.|+|+|.||+|||||+|.|...... ....++.|.|.....+++++  +++.+.||+|..+-..         ....
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence            4689999999999999999999977663 45567777777777777777  7899999999765111         1233


Q ss_pred             hhccCCEEEEEEeCC--ChhhHHhHHHHHHHHHhhcC------CCCeEEEEEeCCCCcCc-cCcCHHHHH-H--HHHHcC
Q 028466           78 YIRDSSVAVIVYDVA--SRQSFLNTTKWVEEVRTERG------SDVIIVLVGNKTDLVDK-RQVSIEEGE-A--KARELN  145 (208)
Q Consensus        78 ~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~------~~~~iivv~nK~D~~~~-~~~~~~~~~-~--~~~~~~  145 (208)
                      .+..+|++++|+|+.  +-++-..+.+.+.....-..      ...+++++.||.|+... .+....-.. .  ......
T Consensus       345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~  424 (531)
T KOG1191|consen  345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVF  424 (531)
T ss_pred             HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCccc
Confidence            477899999999993  33333333444444332221      23688999999999754 222211111 1  111112


Q ss_pred             CeEEEeecCCCCCHHHHHHHHHHHcCCCcc
Q 028466          146 VMFIETSAKAGFNIKALFRKIAAALPGMET  175 (208)
Q Consensus       146 ~~~~~~S~~~~~~v~~~~~~l~~~~~~~~~  175 (208)
                      -.+.++|+.+++|++.+...|.+.+.....
T Consensus       425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  425 PIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             ceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence            245669999999999999999988754433

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.64  E-value=5.5e-15  Score=126.59  Aligned_cols=122  Identities=17%  Similarity=0.156  Sum_probs=87.0

Q ss_pred             CCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCC------------------CCCccceeeeeeeEEEEEECCeEEEEEEE
Q 028466            2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKF------------------DNTYQATIGIDFLSKTMYLEDRTVRLQLW   63 (208)
Q Consensus         2 ~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   63 (208)
                      .+....+-.+|+|+|+.++|||||+++|+...-                  ..+..+.++++.....+.+++  +++.+|
T Consensus         3 ~~~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~li   80 (689)
T TIGR00484         3 RTTDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINII   80 (689)
T ss_pred             CcCccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEE
Confidence            344445567999999999999999999973211                  011234455555566666655  689999


Q ss_pred             ecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc
Q 028466           64 DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK  129 (208)
Q Consensus        64 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~  129 (208)
                      ||||+.++...+..+++.+|++|+|+|+.+...... ..++..+..   .+.|+++++||+|+...
T Consensus        81 DTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        81 DTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQANR---YEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             ECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCCEEEEEECCCCCCC
Confidence            999999988888899999999999999986433322 222232322   35889999999998653

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.62  E-value=8.6e-15  Score=111.81  Aligned_cols=149  Identities=24%  Similarity=0.324  Sum_probs=109.7

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCC---------------------------------CCCccceeeeeeeEEEEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF---------------------------------DNTYQATIGIDFLSKTMYL   53 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~   53 (208)
                      -..+|++-+|.-.-||||||-||+...-                                 ..+++-+++++..+..+  
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF--   81 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF--   81 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec--
Confidence            3468999999999999999999874311                                 11222344555555444  


Q ss_pred             CCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC
Q 028466           54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS  133 (208)
Q Consensus        54 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~  133 (208)
                      .....+|+|-|||||+.|.+........+|+.|+++|+-  ..+.++......+....+. ..++|.+||+||.+..+..
T Consensus        82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QTrRHs~I~sLLGI-rhvvvAVNKmDLvdy~e~~  158 (431)
T COG2895          82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQTRRHSFIASLLGI-RHVVVAVNKMDLVDYSEEV  158 (431)
T ss_pred             ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHhHHHHHHHHHhCC-cEEEEEEeeecccccCHHH
Confidence            444568999999999999999988899999999999995  5666665555666666543 3477788999998876655


Q ss_pred             HHHH----HHHHHHcCC---eEEEeecCCCCCHH
Q 028466          134 IEEG----EAKARELNV---MFIETSAKAGFNIK  160 (208)
Q Consensus       134 ~~~~----~~~~~~~~~---~~~~~S~~~~~~v~  160 (208)
                      ++++    ..++.++++   .++++||+.|+|+-
T Consensus       159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         159 FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            5544    455666664   79999999999865

>PRK09866 hypothetical protein; Provisional

Probab=99.61  E-value=3.7e-14  Score=116.85  Aligned_cols=109  Identities=18%  Similarity=0.214  Sum_probs=73.6

Q ss_pred             EEEEEecCCchhh-----ccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC
Q 028466           59 RLQLWDTAGQERF-----RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS  133 (208)
Q Consensus        59 ~~~i~D~~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~  133 (208)
                      ++.|+||||....     .......+..+|+++||+|+...-+... ...+..+... +.+.|+++|+||+|+.+.....
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreedd  308 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSDD  308 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccch
Confidence            5789999997542     2234457899999999999986422222 2223333322 2235999999999986433333


Q ss_pred             HHHHHHHHHHc-------CCeEEEeecCCCCCHHHHHHHHHHH
Q 028466          134 IEEGEAKAREL-------NVMFIETSAKAGFNIKALFRKIAAA  169 (208)
Q Consensus       134 ~~~~~~~~~~~-------~~~~~~~S~~~~~~v~~~~~~l~~~  169 (208)
                      .+.+..+....       ...+|++||+.|.|++.+++.|...
T Consensus       309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence            44555554322       3479999999999999999999874

>PRK00007 elongation factor G; Reviewed

Probab=99.60  E-value=1e-13  Score=118.80  Aligned_cols=116  Identities=19%  Similarity=0.204  Sum_probs=82.9

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhc--CCC----------------CCCccceeeeeeeEEEEEECCeEEEEEEEecCC
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMY--DKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (208)
                      ..+-.+|+|+|+.++|||||+++|+.  +..                ..+..+..+++.....+.+.+  +.++++||||
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG   84 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPG   84 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCC
Confidence            44567999999999999999999973  111                011244555666566666655  6799999999


Q ss_pred             chhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466           68 QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV  127 (208)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~  127 (208)
                      +..|.......+..+|++|+|+|+...-.... ...+..+..   .+.|.++++||+|+.
T Consensus        85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~---~~~p~iv~vNK~D~~  140 (693)
T PRK00007         85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK---YKVPRIAFVNKMDRT  140 (693)
T ss_pred             cHHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH---cCCCEEEEEECCCCC
Confidence            99988888888999999999999875422222 222222322   357889999999985

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.59  E-value=1.2e-13  Score=110.59  Aligned_cols=166  Identities=20%  Similarity=0.277  Sum_probs=101.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEE---------------------EC-CeEEEEEEEecCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMY---------------------LE-DRTVRLQLWDTAG   67 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~i~D~~G   67 (208)
                      ++|+|+|.+++|||||+|+|++........+..+++.......                     .+ .....+.+||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            6899999999999999999998776533233333333322211                     11 1225789999999


Q ss_pred             ch----hhccchhhh---hccCCEEEEEEeCCC---------------hh-hHHh----HHHH-----------------
Q 028466           68 QE----RFRSLIPSY---IRDSSVAVIVYDVAS---------------RQ-SFLN----TTKW-----------------  103 (208)
Q Consensus        68 ~~----~~~~~~~~~---~~~~d~~i~v~d~~~---------------~~-s~~~----~~~~-----------------  103 (208)
                      .-    ....+-..+   ++++|++++|+|+..               |. .++.    +..|                 
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~  161 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQ  161 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            42    222333333   889999999999971               11 1100    0000                 


Q ss_pred             -----------------------HHHHHh-h---------------------cCCCCeEEEEEeCCCCcCccCcCHHHHH
Q 028466          104 -----------------------VEEVRT-E---------------------RGSDVIIVLVGNKTDLVDKRQVSIEEGE  138 (208)
Q Consensus       104 -----------------------~~~~~~-~---------------------~~~~~~iivv~nK~D~~~~~~~~~~~~~  138 (208)
                                             +..+.. .                     ....+|+++|+||.|...... ....+.
T Consensus       162 ~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~-~l~~i~  240 (396)
T PRK09602        162 AEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEE-NIERLK  240 (396)
T ss_pred             cCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchH-HHHHHH
Confidence                                   000000 0                     012479999999999753221 122222


Q ss_pred             HHHHHcCCeEEEeecCCCCCHHH-HHHHHHHHcCCCccCCcc
Q 028466          139 AKARELNVMFIETSAKAGFNIKA-LFRKIAAALPGMETLSST  179 (208)
Q Consensus       139 ~~~~~~~~~~~~~S~~~~~~v~~-~~~~l~~~~~~~~~~~~~  179 (208)
                      ++   .+..++.+||..+.++.+ +.+.+.+.+++.+.-...
T Consensus       241 ~~---~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~  279 (396)
T PRK09602        241 EE---KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEIL  279 (396)
T ss_pred             hc---CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCcc
Confidence            22   356799999999999999 889999988776544433

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.59  E-value=1.4e-14  Score=107.50  Aligned_cols=161  Identities=18%  Similarity=0.319  Sum_probs=105.9

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEE-EEECCeEEEEEEEecCCchh-------hccchhhh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKT-MYLEDRTVRLQLWDTAGQER-------FRSLIPSY   78 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~   78 (208)
                      ...++|+++|..|+|||||+|+|+++...+-..-..+.+..... ..++.  -.+++||+||.++       ++.....+
T Consensus        37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~  114 (296)
T COG3596          37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDY  114 (296)
T ss_pred             cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHH
Confidence            45799999999999999999999976664433222222222211 12333  3699999999665       77777888


Q ss_pred             hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc-------CcCHHHHHHHHHH--------
Q 028466           79 IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR-------QVSIEEGEAKARE--------  143 (208)
Q Consensus        79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-------~~~~~~~~~~~~~--------  143 (208)
                      +...|.++++.++.|+.--. -.+++..+.... .+.++++++|..|....-       ......++++...        
T Consensus       115 l~~~DLvL~l~~~~draL~~-d~~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~  192 (296)
T COG3596         115 LPKLDLVLWLIKADDRALGT-DEDFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL  192 (296)
T ss_pred             hhhccEEEEeccCCCccccC-CHHHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999998763211 233344444333 348899999999975320       1111112222111        


Q ss_pred             cC--CeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          144 LN--VMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       144 ~~--~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      ..  -+++..+...+=|++++...+++.++
T Consensus       193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         193 FQEVKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             HhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence            11  26788888999999999999999886

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.59  E-value=1.4e-14  Score=94.62  Aligned_cols=137  Identities=22%  Similarity=0.295  Sum_probs=98.8

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCC----chhhccchhhhhccCCEEE
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----QERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~~~~~~~~~~~~~~d~~i   86 (208)
                      ||+++|..|+|||||.+.|.+....  +..+..+++       +..    -.+||||    +..+.+.......++|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve~-------~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVEF-------NDK----GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhh--hcccceeec-------cCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            7899999999999999999877552  333433322       221    1569998    3333333445577899999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~  165 (208)
                      +|-.++++++.-.-.     +...  ...|+|-|++|.|+.+  ..+....+.+..+.|. ++|++|+.++.|++++++.
T Consensus        70 ~v~~and~~s~f~p~-----f~~~--~~k~vIgvVTK~DLae--d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~  140 (148)
T COG4917          70 YVHAANDPESRFPPG-----FLDI--GVKKVIGVVTKADLAE--DADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY  140 (148)
T ss_pred             eeecccCccccCCcc-----cccc--cccceEEEEecccccc--hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence            999999875432211     1111  2355888899999975  3457788999999997 7999999999999999999


Q ss_pred             HHHH
Q 028466          166 IAAA  169 (208)
Q Consensus       166 l~~~  169 (208)
                      |...
T Consensus       141 L~~~  144 (148)
T COG4917         141 LASL  144 (148)
T ss_pred             HHhh
Confidence            8754

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=4.5e-14  Score=100.83  Aligned_cols=156  Identities=23%  Similarity=0.341  Sum_probs=103.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhc---cCCEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR---DSSVA   85 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~~   85 (208)
                      .-.|+++|+.+||||+|+-+|..+.+.....+   ++.....+...+.  .++++|.|||.+.+.-...+++   .+-++
T Consensus        38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS---iepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akai  112 (238)
T KOG0090|consen   38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTS---IEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAI  112 (238)
T ss_pred             CCcEEEEecCCCCceeeeeehhcCCccCeeee---eccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence            35799999999999999999998855433222   2223333334333  3889999999998887777777   78999


Q ss_pred             EEEEeCCC-hhhHHhHHHHHHHHHhhc---CCCCeEEEEEeCCCCcCccCcC------HHHH------HH----------
Q 028466           86 VIVYDVAS-RQSFLNTTKWVEEVRTER---GSDVIIVLVGNKTDLVDKRQVS------IEEG------EA----------  139 (208)
Q Consensus        86 i~v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~~~~------~~~~------~~----------  139 (208)
                      |||+|..- ......+.+++..+....   ...+|+++++||.|+.-+....      +.++      +.          
T Consensus       113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~  192 (238)
T KOG0090|consen  113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI  192 (238)
T ss_pred             EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence            99999862 334444444554444333   3668899999999985321100      0000      00          


Q ss_pred             --------------HHH--HcCCeEEEeecCCCCCHHHHHHHHHHHc
Q 028466          140 --------------KAR--ELNVMFIETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       140 --------------~~~--~~~~~~~~~S~~~~~~v~~~~~~l~~~~  170 (208)
                                    |.+  ...+.|.+.|++++ +++++.+||.+.+
T Consensus       193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l  238 (238)
T KOG0090|consen  193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL  238 (238)
T ss_pred             cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence                          000  01356888999988 8999999998753

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.58  E-value=2.8e-14  Score=112.54  Aligned_cols=161  Identities=20%  Similarity=0.288  Sum_probs=115.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCC--CC------------CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccch
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDK--FD------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI   75 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   75 (208)
                      -+|+|+.+-..|||||+..|+.+.  |.            ...+...++++..+..-+....+.++|+|||||.+|...+
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV   85 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV   85 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence            579999999999999999998432  11            1122344555666655555555889999999999999999


Q ss_pred             hhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC-HHHHHHHHHHc-------CCe
Q 028466           76 PSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS-IEEGEAKAREL-------NVM  147 (208)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~-~~~~~~~~~~~-------~~~  147 (208)
                      .+.+..+|++++++|+... .+.+.+..+......   +.+.|||+||+|...++... .++...++.++       ..+
T Consensus        86 ERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~~---gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP  161 (603)
T COG1217          86 ERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALAL---GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP  161 (603)
T ss_pred             hhhhhhcceEEEEEEcccC-CCCchhhhHHHHHHc---CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence            9999999999999999852 344445544444432   45567778999987654322 22333333333       457


Q ss_pred             EEEeecCCC----------CCHHHHHHHHHHHcCCCc
Q 028466          148 FIETSAKAG----------FNIKALFRKIAAALPGME  174 (208)
Q Consensus       148 ~~~~S~~~~----------~~v~~~~~~l~~~~~~~~  174 (208)
                      ++..|+..|          +++.-+|+.|.+.++...
T Consensus       162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         162 IVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             EEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence            888998876          468999999999997665

>PRK12740 elongation factor G; Reviewed

Probab=99.56  E-value=8.6e-14  Score=119.20  Aligned_cols=107  Identities=20%  Similarity=0.197  Sum_probs=76.2

Q ss_pred             EcCCCCcHHHHHHHhhcCCC------------------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchh
Q 028466           15 LGDQSVGKTSIITRFMYDKF------------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP   76 (208)
Q Consensus        15 vG~~~~GKStli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   76 (208)
                      +|+.++|||||+++|+...-                  ..+..+.+++......+.+.+  +.+.+|||||+..+...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence            69999999999999953211                  011223444555555555655  7899999999999888888


Q ss_pred             hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466           77 SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV  127 (208)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~  127 (208)
                      .++..+|++++|+|++......... .+..+..   .+.|+++|+||+|+.
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~-~~~~~~~---~~~p~iiv~NK~D~~  125 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTET-VWRQAEK---YGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHH-HHHHHHH---cCCCEEEEEECCCCC
Confidence            8999999999999998754433322 2222322   358999999999985

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.55  E-value=2e-13  Score=119.55  Aligned_cols=145  Identities=25%  Similarity=0.274  Sum_probs=100.8

Q ss_pred             CcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeE----------------EEEEEEecCCchhhccchhhhhccCC
Q 028466           20 VGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT----------------VRLQLWDTAGQERFRSLIPSYIRDSS   83 (208)
Q Consensus        20 ~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (208)
                      ++||||+.++.+-+........+|.++....+..+...                ..+.||||||++.|..+....+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            45999999999888877666777766666655554211                13899999999999888888888999


Q ss_pred             EEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC----------------HHHHH------
Q 028466           84 VAVIVYDVAS---RQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS----------------IEEGE------  138 (208)
Q Consensus        84 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~----------------~~~~~------  138 (208)
                      ++++|+|+++   +++++.+.    .+..   .+.|+++|+||+|+.......                ..+..      
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v  624 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL  624 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            9999999986   33333322    2222   358999999999996432210                01110      


Q ss_pred             -HHHHHc---------------CCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          139 -AKAREL---------------NVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       139 -~~~~~~---------------~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                       ....+.               .+.++++||++|+|+++++.+|.....
T Consensus       625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence             001111               357999999999999999998875543

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=1.1e-13  Score=111.86  Aligned_cols=151  Identities=26%  Similarity=0.379  Sum_probs=107.9

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcC-------------------------------CCCCCccceeeeeeeEEEEEECCe
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYD-------------------------------KFDNTYQATIGIDFLSKTMYLEDR   56 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~   56 (208)
                      .-+.++++|+-.+|||||+.+++..                               +..+++.++++.+.  ....++..
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v--~~~~fes~  253 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDV--KTTWFESK  253 (603)
T ss_pred             cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEe--eeEEEecC
Confidence            3588999999999999999998621                               11223344444444  44445566


Q ss_pred             EEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChh---hHH---hHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ---SFL---NTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR  130 (208)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~  130 (208)
                      ...++|+|+|||..|-........++|+.|+|+|++..+   +|+   +.++. ..+.+..+ -..++|++||+|+++..
T Consensus       254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEh-a~llr~Lg-i~qlivaiNKmD~V~Ws  331 (603)
T KOG0458|consen  254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREH-ALLLRSLG-ISQLIVAINKMDLVSWS  331 (603)
T ss_pred             ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHH-HHHHHHcC-cceEEEEeecccccCcc
Confidence            678999999999999999988899999999999998631   222   12332 23333333 24578888999999888


Q ss_pred             CcCHHHHHHHHHHc----------CCeEEEeecCCCCCHHHH
Q 028466          131 QVSIEEGEAKAREL----------NVMFIETSAKAGFNIKAL  162 (208)
Q Consensus       131 ~~~~~~~~~~~~~~----------~~~~~~~S~~~~~~v~~~  162 (208)
                      +..+++++.....+          .+.|+++|+..|+|+...
T Consensus       332 q~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  332 QDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            77777776555443          357999999999997655

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.52  E-value=7.7e-13  Score=100.30  Aligned_cols=171  Identities=19%  Similarity=0.287  Sum_probs=122.7

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECC--eEEEEEEEecCCchhhccchhhhhccC---
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED--RTVRLQLWDTAGQERFRSLIPSYIRDS---   82 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~---   82 (208)
                      ..-+|+|+|..++|||||+.+|.+.+   ..-+..+..|.+..+.-+.  ...++.+|-..|..-+..+....+...   
T Consensus        51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a  127 (473)
T KOG3905|consen   51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA  127 (473)
T ss_pred             CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence            45689999999999999999998765   3445555666655553322  223677887778766665555443332   


Q ss_pred             -CEEEEEEeCCChhhH-HhHHHHHHHHHhhc-------------------------------------------------
Q 028466           83 -SVAVIVYDVASRQSF-LNTTKWVEEVRTER-------------------------------------------------  111 (208)
Q Consensus        83 -d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-------------------------------------------------  111 (208)
                       -++|++.|.++|+.+ +.+..|...+.++.                                                 
T Consensus       128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~  207 (473)
T KOG3905|consen  128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH  207 (473)
T ss_pred             ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence             478889999999554 44677776655431                                                 


Q ss_pred             ------------CCCCeEEEEEeCCCCcC----ccC-------cCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466          112 ------------GSDVIIVLVGNKTDLVD----KRQ-------VSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA  168 (208)
Q Consensus       112 ------------~~~~~iivv~nK~D~~~----~~~-------~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (208)
                                  +.++|++||++|+|...    +.+       .....+++|+..+|+.++.+|+++..|++-+..+|.+
T Consensus       208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh  287 (473)
T KOG3905|consen  208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH  287 (473)
T ss_pred             cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence                        11358899999999842    111       1234668888899999999999999999999999999


Q ss_pred             HcCCCccCCcccc
Q 028466          169 ALPGMETLSSTKQ  181 (208)
Q Consensus       169 ~~~~~~~~~~~~~  181 (208)
                      ..++.+...+..-
T Consensus       288 r~yG~~fttpAlV  300 (473)
T KOG3905|consen  288 RSYGFPFTTPALV  300 (473)
T ss_pred             HhcCcccCCcceE
Confidence            9999877765543

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.49  E-value=1.9e-13  Score=117.56  Aligned_cols=116  Identities=20%  Similarity=0.195  Sum_probs=78.7

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcC---------------CCC-CCccceeeeee--eEEEEEECCeEEEEEEEecCCch
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYD---------------KFD-NTYQATIGIDF--LSKTMYLEDRTVRLQLWDTAGQE   69 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~---------------~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~G~~   69 (208)
                      +..+|+++|+.++|||||+++|+..               .+. .+..+..+++.  ......+++..+.+.+|||||+.
T Consensus        18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~   97 (720)
T TIGR00490        18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV   97 (720)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence            4579999999999999999999742               111 11112222222  22223355666889999999999


Q ss_pred             hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466           70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV  127 (208)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~  127 (208)
                      .|......+++.+|++|+|+|+.+.-.... ...+..+.   ..+.|+++++||+|..
T Consensus        98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~---~~~~p~ivviNKiD~~  151 (720)
T TIGR00490        98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQAL---KENVKPVLFINKVDRL  151 (720)
T ss_pred             ccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHH---HcCCCEEEEEEChhcc
Confidence            998888899999999999999975321111 12122222   2356778999999985

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.48  E-value=2e-12  Score=99.17  Aligned_cols=121  Identities=12%  Similarity=0.153  Sum_probs=71.6

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCC-ccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccch-------h
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI-------P   76 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------~   76 (208)
                      .+...++|+|+|.+|+||||++|+|++...... .....+..........++  ..+.++||||........       .
T Consensus        34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik  111 (313)
T TIGR00991        34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIK  111 (313)
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHH
Confidence            456789999999999999999999998765321 111112121122222343  679999999966432211       1


Q ss_pred             hhh--ccCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcC--CCCeEEEEEeCCCCcC
Q 028466           77 SYI--RDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERG--SDVIIVLVGNKTDLVD  128 (208)
Q Consensus        77 ~~~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~--~~~~iivv~nK~D~~~  128 (208)
                      .++  ...|++++|..++.. .+.. -...+..+....+  .-.++||+.|+.|..+
T Consensus       112 ~~l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991       112 RFLLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP  167 (313)
T ss_pred             HHhhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence            111  258999999665422 1221 1223333433332  1245888899999753

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.47  E-value=3.7e-13  Score=107.15  Aligned_cols=164  Identities=18%  Similarity=0.129  Sum_probs=114.7

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc----cchh-----
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR----SLIP-----   76 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~-----   76 (208)
                      ++..-.++|+|.++||||||+|.++.........++.+.-.....+.+..  ..+.++||||.-+.-    ....     
T Consensus       165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsIT  242 (620)
T KOG1490|consen  165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIIT  242 (620)
T ss_pred             CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHH
Confidence            56778999999999999999999988777655555555444444443333  578999999944211    1111     


Q ss_pred             hhhccCCEEEEEEeCC--ChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHH---HHHHHHHHcCCeEEEe
Q 028466           77 SYIRDSSVAVIVYDVA--SRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIE---EGEAKARELNVMFIET  151 (208)
Q Consensus        77 ~~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~  151 (208)
                      ....--.+++++.|++  +..++.++...+..+.... .+.|+|+|+||+|+.....+...   .+......-+++++++
T Consensus       243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t  321 (620)
T KOG1490|consen  243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT  321 (620)
T ss_pred             HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence            1112235788888988  3567888888888888766 57899999999998755444432   3334444445899999


Q ss_pred             ecCCCCCHHHHHHHHHHHcCC
Q 028466          152 SAKAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       152 S~~~~~~v~~~~~~l~~~~~~  172 (208)
                      |+.+.+|+.++.....+.+..
T Consensus       322 S~~~eegVm~Vrt~ACe~LLa  342 (620)
T KOG1490|consen  322 SCVQEEGVMDVRTTACEALLA  342 (620)
T ss_pred             cccchhceeeHHHHHHHHHHH
Confidence            999999999888777766543

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=4.1e-13  Score=101.63  Aligned_cols=171  Identities=20%  Similarity=0.187  Sum_probs=116.0

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcC---CCCCCccceeeeeeeEEEEEE------------------C------CeEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYD---KFDNTYQATIGIDFLSKTMYL------------------E------DRTVR   59 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~------------------~------~~~~~   59 (208)
                      ..+++|.++|+-..|||||..+|.+-   .+.++..+.+++...+....+                  .      .-...
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            45899999999999999999998753   333444444444433322111                  1      11247


Q ss_pred             EEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC--cCHHHH
Q 028466           60 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ--VSIEEG  137 (208)
Q Consensus        60 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~  137 (208)
                      ++|+|+|||+-..........-.|+.++|++++.+..--+..+.+-.+. ..+ -..++++-||+|++...+  ..+.++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Ale-Iig-ik~iiIvQNKIDlV~~E~AlE~y~qI  165 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALE-IIG-IKNIIIVQNKIDLVSRERALENYEQI  165 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHh-hhc-cceEEEEecccceecHHHHHHHHHHH
Confidence            8999999999777666566666799999999986432222333222222 111 145888899999975432  335667


Q ss_pred             HHHHHHc---CCeEEEeecCCCCCHHHHHHHHHHHcCCCccCCcc
Q 028466          138 EAKAREL---NVMFIETSAKAGFNIKALFRKIAAALPGMETLSST  179 (208)
Q Consensus       138 ~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~~~~~~~~~~~  179 (208)
                      ++|.+..   +++++++||..+.|++.+++.|.+.++........
T Consensus       166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~  210 (415)
T COG5257         166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDK  210 (415)
T ss_pred             HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCC
Confidence            7776654   57999999999999999999999999765444333

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.46  E-value=2.8e-12  Score=96.75  Aligned_cols=119  Identities=15%  Similarity=0.129  Sum_probs=72.8

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCc-cceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc----------ch
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------LI   75 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~   75 (208)
                      ...++|+|+|.+|+|||||+|.|++....... ....+..........++  ..+.+|||||......          ..
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I  106 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI  106 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence            45799999999999999999999987653221 22223333333334444  5799999999664421          12


Q ss_pred             hhhhc--cCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCC--CCeEEEEEeCCCCcC
Q 028466           76 PSYIR--DSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGS--DVIIVLVGNKTDLVD  128 (208)
Q Consensus        76 ~~~~~--~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~--~~~iivv~nK~D~~~  128 (208)
                      ..++.  ..|++++|..++.. .+.. -...+..+....+.  -.++++|.||.|...
T Consensus       107 ~~~l~~~~idvIL~V~rlD~~-r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~  163 (249)
T cd01853         107 KRYLKKKTPDVVLYVDRLDMY-RRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP  163 (249)
T ss_pred             HHHHhccCCCEEEEEEcCCCC-CCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence            22333  57888888766532 1111 12333444433332  245899999999853

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.46  E-value=5e-12  Score=102.81  Aligned_cols=170  Identities=21%  Similarity=0.337  Sum_probs=119.1

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECC--eEEEEEEEecCCchhhccchhhhhcc---
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED--RTVRLQLWDTAGQERFRSLIPSYIRD---   81 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~---   81 (208)
                      ...-.|+|+|..++|||||+.+|.+..   ...++.+.+|.+..+.-+.  ...++.+|-..|...+..+....+..   
T Consensus        23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l   99 (472)
T PF05783_consen   23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL   99 (472)
T ss_pred             CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence            345789999999999999999997654   3345666667666553332  22368899888866676666554442   


Q ss_pred             -CCEEEEEEeCCChhhHH-hHHHHHHHHHhh-------------------------------c-----------------
Q 028466           82 -SSVAVIVYDVASRQSFL-NTTKWVEEVRTE-------------------------------R-----------------  111 (208)
Q Consensus        82 -~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~-------------------------------~-----------------  111 (208)
                       --++|+|.|.+.|+.+- .+..|+..+..+                               .                 
T Consensus       100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~  179 (472)
T PF05783_consen  100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD  179 (472)
T ss_pred             cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence             25788899999987553 244444333221                               0                 


Q ss_pred             --------------CCCCeEEEEEeCCCCcCcc-------C----cCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466          112 --------------GSDVIIVLVGNKTDLVDKR-------Q----VSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus       112 --------------~~~~~iivv~nK~D~~~~~-------~----~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                                    ..++|++||++|.|.....       +    ....-++.++..+|+.++.+|++...+++.++.+|
T Consensus       180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi  259 (472)
T PF05783_consen  180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI  259 (472)
T ss_pred             ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence                          0126899999999975311       1    11234678888899999999999999999999999


Q ss_pred             HHHcCCCccCCcc
Q 028466          167 AAALPGMETLSST  179 (208)
Q Consensus       167 ~~~~~~~~~~~~~  179 (208)
                      .+.+++.+...+.
T Consensus       260 ~h~l~~~~f~~~~  272 (472)
T PF05783_consen  260 LHRLYGFPFKTPA  272 (472)
T ss_pred             HHHhccCCCCCCc
Confidence            9999888776443

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>cd00066 G-alpha G protein alpha subunit

Probab=99.45  E-value=2.4e-12  Score=100.71  Aligned_cols=116  Identities=18%  Similarity=0.250  Sum_probs=83.1

Q ss_pred             EEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCCh----------hhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCC
Q 028466           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASR----------QSFLNTTKWVEEVRTERG-SDVIIVLVGNKTD  125 (208)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D  125 (208)
                      .+.+.+||++|+...+..|..++.+++++|+|+|+++.          ..+.+....+..+..... .+.|++|++||.|
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D  239 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD  239 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence            36789999999999999999999999999999999874          345554444444444322 6799999999999


Q ss_pred             CcCc----------------cCcCHHHHHHHHHHc----------CCeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466          126 LVDK----------------RQVSIEEGEAKAREL----------NVMFIETSAKAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       126 ~~~~----------------~~~~~~~~~~~~~~~----------~~~~~~~S~~~~~~v~~~~~~l~~~~~~  172 (208)
                      +..+                .......+..+....          .+..+.++|.+..++..+|+.+.+.+..
T Consensus       240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~  312 (317)
T cd00066         240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQ  312 (317)
T ss_pred             HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHH
Confidence            7421                022333443333321          2445778899999999999888887643

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK13768 GTPase; Provisional

Probab=99.45  E-value=1.1e-12  Score=99.52  Aligned_cols=114  Identities=23%  Similarity=0.227  Sum_probs=70.6

Q ss_pred             EEEEEecCCchhh---ccchhhh---hcc--CCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCeEEEEEeCCCCcCc
Q 028466           59 RLQLWDTAGQERF---RSLIPSY---IRD--SSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVDK  129 (208)
Q Consensus        59 ~~~i~D~~G~~~~---~~~~~~~---~~~--~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~  129 (208)
                      .+.+||+||+.+.   +.....+   +..  .+++++|+|+........ ...++..+......+.|+++|+||+|+...
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            5899999997653   2222222   222  899999999965332222 122222211111246899999999998654


Q ss_pred             cCcCH--HHHH------------------------HHHHHcC--CeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466          130 RQVSI--EEGE------------------------AKARELN--VMFIETSAKAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       130 ~~~~~--~~~~------------------------~~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~~~~  172 (208)
                      .+...  ....                        +..++.+  .+++++|+++++|+++++++|.+.++.
T Consensus       178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~  248 (253)
T PRK13768        178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG  248 (253)
T ss_pred             hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence            32211  0000                        1122334  588999999999999999999998854

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.45  E-value=1e-12  Score=97.26  Aligned_cols=161  Identities=12%  Similarity=0.107  Sum_probs=94.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCcc--ceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-------chh----
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQ--ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIP----   76 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~----   76 (208)
                      ++|+|+|..|+||||++|.+++........  ...+..........++  ..+.|+||||..+...       ...    
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999887754432  2333344444445666  5689999999433211       111    


Q ss_pred             hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCC--CeEEEEEeCCCCcCccCcC-------HHHHHHHHHHcCCe
Q 028466           77 SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD--VIIVLVGNKTDLVDKRQVS-------IEEGEAKARELNVM  147 (208)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~  147 (208)
                      ....+.|++++|+.+.... - .....+..+....+..  ..++||.|..|......+.       ...++.+....+-.
T Consensus        79 ~~~~g~ha~llVi~~~r~t-~-~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRFT-E-EDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETTB-S-H-HHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecCcch-H-HHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            1234689999999987321 1 1122233333333321  3477777888865443311       12245556666778


Q ss_pred             EEEeecC------CCCCHHHHHHHHHHHcCCCc
Q 028466          148 FIETSAK------AGFNIKALFRKIAAALPGME  174 (208)
Q Consensus       148 ~~~~S~~------~~~~v~~~~~~l~~~~~~~~  174 (208)
                      |+.++..      +...+.++++.|-+++.+..
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            8877777      34568888888888875443

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.45  E-value=1.8e-12  Score=111.78  Aligned_cols=116  Identities=20%  Similarity=0.200  Sum_probs=77.9

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCC----------------CCCccceeeeeeeEEEEE--ECCeEEEEEEEecCCch
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMY--LEDRTVRLQLWDTAGQE   69 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~D~~G~~   69 (208)
                      +..+|+++|+.++|||||+++|+...-                ..+..+.++++.....+.  +++..+.++++||||+.
T Consensus        19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~   98 (731)
T PRK07560         19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV   98 (731)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence            345799999999999999999974211                011122233333333332  34456789999999999


Q ss_pred             hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466           70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV  127 (208)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~  127 (208)
                      +|.......++.+|++|+|+|+...-.. +....+..+..   .+.|.|+++||+|..
T Consensus        99 df~~~~~~~l~~~D~avlVvda~~g~~~-~t~~~~~~~~~---~~~~~iv~iNK~D~~  152 (731)
T PRK07560         99 DFGGDVTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALR---ERVKPVLFINKVDRL  152 (731)
T ss_pred             ChHHHHHHHHHhcCEEEEEEECCCCCCc-cHHHHHHHHHH---cCCCeEEEEECchhh
Confidence            9998889999999999999999753211 12222222222   235778889999975

>TIGR00101 ureG urease accessory protein UreG

Probab=99.44  E-value=6.5e-12  Score=91.88  Aligned_cols=103  Identities=19%  Similarity=0.158  Sum_probs=65.7

Q ss_pred             EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHH
Q 028466           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEG  137 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~  137 (208)
                      ....++++.|..-...... .  -+|.+|.|+|+.+.+....  ....++.      ..=++++||+|+.+.........
T Consensus        92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPMVGADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhccccccccHHHH
Confidence            3566778888432222221 1  2688999999986544321  1112221      11277789999975333344555


Q ss_pred             HHHHHH--cCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          138 EAKARE--LNVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       138 ~~~~~~--~~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      .+.++.  .+++++++|+++|+|+++++++|.+.+.
T Consensus       161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            555555  3579999999999999999999997763

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.44  E-value=2.1e-12  Score=101.52  Aligned_cols=159  Identities=16%  Similarity=0.142  Sum_probs=83.0

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCcccee---eeeeeEEEEEECCeEEEEEEEecCCchhhccchhhh-----h
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI---GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----I   79 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----~   79 (208)
                      .+++|+|+|.+|+|||||||.|.+-...+......   +.+........ ...-.+.+||.||..-.......|     +
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            46899999999999999999998654432222111   11111112211 111259999999976433333333     5


Q ss_pred             ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc--C-----ccCcCH----HHHHHHHHH----c
Q 028466           80 RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV--D-----KRQVSI----EEGEAKARE----L  144 (208)
Q Consensus        80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~--~-----~~~~~~----~~~~~~~~~----~  144 (208)
                      ...|.+|++.+    +.|....-++....+.  .++|+++|-+|+|..  .     .+....    .++++.+.+    .
T Consensus       113 ~~yD~fiii~s----~rf~~ndv~La~~i~~--~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~  186 (376)
T PF05049_consen  113 YRYDFFIIISS----ERFTENDVQLAKEIQR--MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA  186 (376)
T ss_dssp             GG-SEEEEEES----SS--HHHHHHHHHHHH--TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred             cccCEEEEEeC----CCCchhhHHHHHHHHH--cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence            56799888887    4455544444433333  358999999999961  1     111222    233333332    2


Q ss_pred             CC---eEEEeecCCCC--CHHHHHHHHHHHcCCC
Q 028466          145 NV---MFIETSAKAGF--NIKALFRKIAAALPGM  173 (208)
Q Consensus       145 ~~---~~~~~S~~~~~--~v~~~~~~l~~~~~~~  173 (208)
                      ++   .+|-+|+.+-.  ++..+.+.|.+.++..
T Consensus       187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~  220 (376)
T PF05049_consen  187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH  220 (376)
T ss_dssp             T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred             CCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence            33   68999998865  4778989998887654

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.43  E-value=4.6e-12  Score=100.63  Aligned_cols=85  Identities=19%  Similarity=0.179  Sum_probs=61.0

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeE---------------EEEEEEecCCchh--
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQER--   70 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~--   70 (208)
                      ..++|.|+|.||+|||||+|+|++........+..|++.....+.+....               .++.++|+||.-.  
T Consensus        20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga   99 (390)
T PTZ00258         20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA   99 (390)
T ss_pred             CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence            45799999999999999999998777654445666666555555443221               2589999999532  


Q ss_pred             -----hccchhhhhccCCEEEEEEeCC
Q 028466           71 -----FRSLIPSYIRDSSVAVIVYDVA   92 (208)
Q Consensus        71 -----~~~~~~~~~~~~d~~i~v~d~~   92 (208)
                           ........++.+|++++|+|+.
T Consensus       100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258        100 SEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                 2223344578899999999984

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=8.5e-12  Score=95.48  Aligned_cols=162  Identities=21%  Similarity=0.204  Sum_probs=106.4

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhc-------CCCCCCccceeeeeeeEEEEEEC-------CeEEEEEEEecCCchhhc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMY-------DKFDNTYQATIGIDFLSKTMYLE-------DRTVRLQLWDTAGQERFR   72 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~D~~G~~~~~   72 (208)
                      +..+++.++|+-.+|||||.++|..       ++.+++.++..+.|..-..+...       +...++.++|+|||...-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            3459999999999999999999863       23345556666666555444332       344678999999998776


Q ss_pred             cchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-------c-
Q 028466           73 SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-------L-  144 (208)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-------~-  144 (208)
                      +.......-.|..++|+|+.....-+..+-.  .+.+..  ....+||+||.|..++.+.. ..+.+.+..       . 
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~~--c~klvvvinkid~lpE~qr~-ski~k~~kk~~KtLe~t~  159 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGELL--CKKLVVVINKIDVLPENQRA-SKIEKSAKKVRKTLESTG  159 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhh--hhhhhh--ccceEEEEeccccccchhhh-hHHHHHHHHHHHHHHhcC
Confidence            6666666677999999999843222222211  122222  24467777999976543221 112222111       1 


Q ss_pred             ---CCeEEEeecCCC----CCHHHHHHHHHHHcCCC
Q 028466          145 ---NVMFIETSAKAG----FNIKALFRKIAAALPGM  173 (208)
Q Consensus       145 ---~~~~~~~S~~~~----~~v~~~~~~l~~~~~~~  173 (208)
                         +.+++++|+.+|    +++.++.+.|...+.+.
T Consensus       160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P  195 (522)
T KOG0461|consen  160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP  195 (522)
T ss_pred             cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence               368999999999    88999999888887543

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.42  E-value=1.2e-12  Score=114.26  Aligned_cols=117  Identities=19%  Similarity=0.227  Sum_probs=80.5

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCC----------------CCCccceeeeeeeEEEEEEC--------------Ce
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLE--------------DR   56 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~--------------~~   56 (208)
                      .+-.+|+|+|+.++|||||+++|+...-                ..+..+..+++.....+.+.              +.
T Consensus        17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (843)
T PLN00116         17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN   96 (843)
T ss_pred             cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence            3456999999999999999999974321                11122233333333333332              23


Q ss_pred             EEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV  127 (208)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~  127 (208)
                      .+.++++|||||.+|.......++.+|++|+|+|+...-... .+..+..+.   ..+.|+++++||+|..
T Consensus        97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~-t~~~~~~~~---~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQAL---GERIRPVLTVNKMDRC  163 (843)
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCccc-HHHHHHHHH---HCCCCEEEEEECCccc
Confidence            567899999999999999999999999999999998532222 222222222   2468999999999985

>PTZ00416 elongation factor 2; Provisional

Probab=99.42  E-value=1.4e-12  Score=113.66  Aligned_cols=116  Identities=18%  Similarity=0.237  Sum_probs=80.0

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCC----------------CCCccceeeeeeeEEEEEEC--------CeEEEEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLE--------DRTVRLQLW   63 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~   63 (208)
                      +..+|+|+|+.++|||||+++|+...-                ..+..+.++++.....+.+.        ...+.++++
T Consensus        18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li   97 (836)
T PTZ00416         18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI   97 (836)
T ss_pred             CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence            445999999999999999999985211                11122233333333334443        225679999


Q ss_pred             ecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466           64 DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV  127 (208)
Q Consensus        64 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~  127 (208)
                      ||||+.+|.......++.+|++|+|+|+...-... ....+..+..   .+.|+++++||+|+.
T Consensus        98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH---cCCCEEEEEEChhhh
Confidence            99999999998999999999999999998531111 2222333322   358999999999985

>smart00275 G_alpha G protein alpha subunit

Probab=99.40  E-value=1.4e-11  Score=97.23  Aligned_cols=114  Identities=16%  Similarity=0.232  Sum_probs=81.3

Q ss_pred             EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCCh----------hhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCC
Q 028466           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASR----------QSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDL  126 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~  126 (208)
                      ..+.+||.+|+...+..|..++.+++++|||+|+++.          ..+.+....+..+.+.. ..+.|++|++||.|+
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~  263 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL  263 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence            5689999999999999999999999999999999963          24555444555554432 267899999999998


Q ss_pred             cCcc---------------CcCHHHHHHHHHHc-----------CCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          127 VDKR---------------QVSIEEGEAKAREL-----------NVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       127 ~~~~---------------~~~~~~~~~~~~~~-----------~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      ..+.               ......+..+....           .+..+.++|.+..++..+|+.+.+.+.
T Consensus       264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~  334 (342)
T smart00275      264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIIL  334 (342)
T ss_pred             HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHH
Confidence            4210               01233333333221           144577889999999999988887764

Subunit of G proteins that contains the guanine nucleotide binding site

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.40  E-value=5.7e-12  Score=85.17  Aligned_cols=114  Identities=36%  Similarity=0.416  Sum_probs=80.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCcc-ceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      +|++++|..|+|||+|+.++....+...+. ++.+                           +......+.+..+.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            589999999999999999998777754332 2222                           222233457788999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466           89 YDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK  160 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (208)
                      |+..+.++++.+  |...+....+.+.|.++++||.|+.+..+......        ..++++|++++.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence            999998888755  76666655556788999999999844333332222        235567888888874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.40  E-value=1.9e-12  Score=97.77  Aligned_cols=99  Identities=20%  Similarity=0.268  Sum_probs=79.4

Q ss_pred             hhhccchhhhhccCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCe
Q 028466           69 ERFRSLIPSYIRDSSVAVIVYDVASRQ-SFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVM  147 (208)
Q Consensus        69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (208)
                      +++..+.+.+++++|++++|+|+.++. ++..+..|+..+..   .++|+++|+||+|+.+..+......+. ....++.
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~-~~~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDI-YRNIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHH-HHHCCCe
Confidence            577788888999999999999999887 88889999876643   468999999999996544433333433 3457889


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHcC
Q 028466          148 FIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       148 ~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      ++++|++++.|++++|+.+...+.
T Consensus       100 v~~~SAktg~gi~eLf~~l~~~~~  123 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQNRIS  123 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcCCEE
Confidence            999999999999999999876543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.39  E-value=1.4e-11  Score=99.92  Aligned_cols=163  Identities=18%  Similarity=0.210  Sum_probs=120.2

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (208)
                      .+.+.+.+.++|+.++|||.|++.++++.+...+..+....+....+...+....+.+.|.+-. ....+.... ..+|+
T Consensus       421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv  498 (625)
T KOG1707|consen  421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV  498 (625)
T ss_pred             ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence            3456789999999999999999999999887766555555555555555566667788887653 222222222 67899


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCCHHHHH
Q 028466           85 AVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFNIKALF  163 (208)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~  163 (208)
                      ++++||.+++.+|......+......  ...|+++|++|.|+.+..+....+..++++++++ +.+.+|+++... .++|
T Consensus       499 ~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf  575 (625)
T KOG1707|consen  499 ACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELF  575 (625)
T ss_pred             EEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHH
Confidence            99999999999999988776655443  5699999999999976554444444889999997 456677775333 8899


Q ss_pred             HHHHHHcCC
Q 028466          164 RKIAAALPG  172 (208)
Q Consensus       164 ~~l~~~~~~  172 (208)
                      ..|..+...
T Consensus       576 ~kL~~~A~~  584 (625)
T KOG1707|consen  576 IKLATMAQY  584 (625)
T ss_pred             HHHHHhhhC
Confidence            988877643

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.38  E-value=7.3e-12  Score=97.75  Aligned_cols=104  Identities=15%  Similarity=0.087  Sum_probs=67.5

Q ss_pred             EEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC--cCH
Q 028466           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ--VSI  134 (208)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~  134 (208)
                      ++.+.|+||+|...-...   ....+|.+++|.+...++.+..+..   .+...     .-++|+||.|+.....  ...
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E~-----aDIiVVNKaDl~~~~~a~~~~  216 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIMEL-----ADLIVINKADGDNKTAARRAA  216 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhhh-----hheEEeehhcccchhHHHHHH
Confidence            367899999997633322   4677999999987544444443332   12211     1278889999864321  112


Q ss_pred             HHHHHHHHH-------cCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          135 EEGEAKARE-------LNVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       135 ~~~~~~~~~-------~~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      .+++.....       ...+++.+|+.++.|++++++.|.+.+.
T Consensus       217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            233333332       1257999999999999999999998865

>cd01882 BMS1 Bms1

Probab=99.38  E-value=1.5e-11  Score=91.88  Aligned_cols=139  Identities=13%  Similarity=0.129  Sum_probs=80.3

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+...|+|+|.+|+|||||++.+.+...........+.    ..+ ......++.++||||..   ......++.+|+++
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVl  108 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI---NAMIDIAKVADLVL  108 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH---HHHHHHHHhcCEEE
Confidence            34578999999999999999999864221111111110    111 11233578999999864   22334578899999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccCcC---HHHHHH-HHHHc--CCeEEEeecCCCC
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQVS---IEEGEA-KAREL--NVMFIETSAKAGF  157 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~---~~~~~~-~~~~~--~~~~~~~S~~~~~  157 (208)
                      +|+|++...... ....+..+. .  .+.| +++|+||.|+.+.....   ...++. +..+.  +.+++.+|+++.-
T Consensus       109 lviDa~~~~~~~-~~~i~~~l~-~--~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         109 LLIDASFGFEME-TFEFLNILQ-V--HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             EEEecCcCCCHH-HHHHHHHHH-H--cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence            999997532221 122222232 2  2356 45589999986432211   112222 22222  4689999998874

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.36  E-value=5.4e-11  Score=93.60  Aligned_cols=83  Identities=17%  Similarity=0.174  Sum_probs=58.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeE---------------EEEEEEecCCchh----
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQER----   70 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~----   70 (208)
                      ++|.++|.||+|||||+|+|++........+..|++.....+.+....               .++.++|+||.-.    
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            789999999999999999999877544444555555554444443321               2589999999432    


Q ss_pred             ---hccchhhhhccCCEEEEEEeCC
Q 028466           71 ---FRSLIPSYIRDSSVAVIVYDVA   92 (208)
Q Consensus        71 ---~~~~~~~~~~~~d~~i~v~d~~   92 (208)
                         ........++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence               1122334478999999999984

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.35  E-value=2.5e-12  Score=93.10  Aligned_cols=149  Identities=23%  Similarity=0.316  Sum_probs=95.4

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-----chhhhhccC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----LIPSYIRDS   82 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~   82 (208)
                      .-||+++|.+|+|||++-..+..+-.. +...++.++++....+.+-|. ..+.+||++|++.+-.     .....++++
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            468999999999999988766644322 234455566666655544332 4689999999985433     334568899


Q ss_pred             CEEEEEEeCCChhhHHhH---HHHHHHHHhhcCCCCeEEEEEeCCCCcCcc--CcCHHHHHHHHH----HcCCeEEEeec
Q 028466           83 SVAVIVYDVASRQSFLNT---TKWVEEVRTERGSDVIIVLVGNKTDLVDKR--QVSIEEGEAKAR----ELNVMFIETSA  153 (208)
Q Consensus        83 d~~i~v~d~~~~~s~~~~---~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~----~~~~~~~~~S~  153 (208)
                      +++++|||++..+-...+   +..++.+.++. +...+++..+|+|+....  +....+-+....    ..++.++++|.
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi  161 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI  161 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence            999999999875433333   33444444433 456677788999997542  222223233322    33467888888


Q ss_pred             CCCCCH
Q 028466          154 KAGFNI  159 (208)
Q Consensus       154 ~~~~~v  159 (208)
                      ++..-.
T Consensus       162 wDetl~  167 (295)
T KOG3886|consen  162 WDETLY  167 (295)
T ss_pred             hhHHHH
Confidence            776533

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.35  E-value=2.1e-11  Score=90.01  Aligned_cols=152  Identities=17%  Similarity=0.253  Sum_probs=84.7

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCC------ccceeeee------eeEEEEEECC--------------------
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT------YQATIGID------FLSKTMYLED--------------------   55 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~------~~~~~~~~------~~~~~~~~~~--------------------   55 (208)
                      ....|.|+|+.|+|||||+++++.......      .....+.+      .....+...+                    
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~  100 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL  100 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence            457889999999999999999874311000      00000000      0000111111                    


Q ss_pred             eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHH
Q 028466           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIE  135 (208)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~  135 (208)
                      ....+.+++|.|.-...   ..+....+..+.|+|+.+.+..  +... ...     ...|.++++||.|+.+.......
T Consensus       101 ~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~--~~~~-~~~-----~~~a~iiv~NK~Dl~~~~~~~~~  169 (207)
T TIGR00073       101 DDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDK--PLKY-PGM-----FKEADLIVINKADLAEAVGFDVE  169 (207)
T ss_pred             CCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccch--hhhh-HhH-----HhhCCEEEEEHHHccccchhhHH
Confidence            02356777777721000   1111234556677777643221  1111 111     13567899999999654333334


Q ss_pred             HHHHHHHHcC--CeEEEeecCCCCCHHHHHHHHHHHc
Q 028466          136 EGEAKARELN--VMFIETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       136 ~~~~~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~~  170 (208)
                      +.....++.+  .+++++|++++.|++++++++.+..
T Consensus       170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~  206 (207)
T TIGR00073       170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV  206 (207)
T ss_pred             HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4555555544  7899999999999999999998753

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=1e-11  Score=102.97  Aligned_cols=161  Identities=20%  Similarity=0.188  Sum_probs=108.7

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECC----------------eEEEEEEEecCCch
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED----------------RTVRLQLWDTAGQE   69 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~G~~   69 (208)
                      ..+..-++|+|+-.+|||-|+..+.+-++......+++..+....+...+                ....+.++|||||+
T Consensus       472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE  551 (1064)
T KOG1144|consen  472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE  551 (1064)
T ss_pred             hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence            35667799999999999999999988777655555554333333222210                11247899999999


Q ss_pred             hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC----------------
Q 028466           70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS----------------  133 (208)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~----------------  133 (208)
                      .|..+..+....+|++|+|+|+...  ++.  +.+..+..+...+.|+||..||+|..-.+...                
T Consensus       552 sFtnlRsrgsslC~~aIlvvdImhG--lep--qtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v  627 (1064)
T KOG1144|consen  552 SFTNLRSRGSSLCDLAILVVDIMHG--LEP--QTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDV  627 (1064)
T ss_pred             hhhhhhhccccccceEEEEeehhcc--CCc--chhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHH
Confidence            9999999999999999999999853  221  11222222333579999999999974221100                


Q ss_pred             ----HHHHHHHHHHc------------------CCeEEEeecCCCCCHHHHHHHHHHHc
Q 028466          134 ----IEEGEAKAREL------------------NVMFIETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       134 ----~~~~~~~~~~~------------------~~~~~~~S~~~~~~v~~~~~~l~~~~  170 (208)
                          ..+......++                  .+.++++||.+|+||-+++-+|+++.
T Consensus       628 ~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt  686 (1064)
T KOG1144|consen  628 QNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT  686 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence                01111111111                  13579999999999999999998775

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=2.7e-11  Score=102.65  Aligned_cols=118  Identities=20%  Similarity=0.234  Sum_probs=84.6

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcC--------C------C----CCCccceeeeeeeEEEEEECCeEEEEEEEecCC
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYD--------K------F----DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~--------~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (208)
                      ..+--+|.|+|+..+|||||.++++..        +      +    .++..+.++++-....+.+.+ .+.++++||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG   85 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG   85 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence            456678999999999999999998721        0      1    112233444444444455553 47899999999


Q ss_pred             chhhccchhhhhccCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCc
Q 028466           68 QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK  129 (208)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~  129 (208)
                      |-+|...+.+.++-.|++|+|+|+...  ++.+ +..   +++....++|.++++||+|....
T Consensus        86 HVDFt~EV~rslrvlDgavvVvdaveG--V~~QTEtv---~rqa~~~~vp~i~fiNKmDR~~a  143 (697)
T COG0480          86 HVDFTIEVERSLRVLDGAVVVVDAVEG--VEPQTETV---WRQADKYGVPRILFVNKMDRLGA  143 (697)
T ss_pred             ccccHHHHHHHHHhhcceEEEEECCCC--eeecHHHH---HHHHhhcCCCeEEEEECcccccc
Confidence            999999999999999999999999843  3322 222   22233356999999999998643

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.30  E-value=1.7e-12  Score=97.40  Aligned_cols=112  Identities=23%  Similarity=0.143  Sum_probs=58.1

Q ss_pred             EEEEEecCCchhhccchhhhh--------ccCCEEEEEEeCCChhh-HHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc
Q 028466           59 RLQLWDTAGQERFRSLIPSYI--------RDSSVAVIVYDVASRQS-FLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK  129 (208)
Q Consensus        59 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~  129 (208)
                      .+.++|||||-++-..+...-        ...-++++++|+..... ...+..++..+......+.|.+.|+||+|+.+.
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            689999999987655443332        34568888999863322 122233333333222246999999999999762


Q ss_pred             cC----------------------cCHHHHHHHHHHcC-C-eEEEeecCCCCCHHHHHHHHHHHc
Q 028466          130 RQ----------------------VSIEEGEAKARELN-V-MFIETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       130 ~~----------------------~~~~~~~~~~~~~~-~-~~~~~S~~~~~~v~~~~~~l~~~~  170 (208)
                      ..                      .....+.....+++ . .++++|+.+++|+++++..+-+.+
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            10                      00001111111123 3 799999999999999999887654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.29  E-value=3.1e-11  Score=86.09  Aligned_cols=63  Identities=19%  Similarity=0.259  Sum_probs=42.8

Q ss_pred             EEEEEecCCchh----hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCC
Q 028466           59 RLQLWDTAGQER----FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT  124 (208)
Q Consensus        59 ~~~i~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~  124 (208)
                      .+.|+||||...    ....+..++..+|++|+|.++++...-.....+.......   ...+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            478999999653    3356788889999999999999754444444444444332   23488888884

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=2.9e-11  Score=90.69  Aligned_cols=158  Identities=18%  Similarity=0.176  Sum_probs=105.2

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhc----------------CCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMY----------------DKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (208)
                      .-++|..+|+-+.|||||..+++.                ++.+++..+.  +++....+.+......+..+|+|||.+|
T Consensus        11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rG--ITIntahveyet~~rhyahVDcPGHaDY   88 (394)
T COG0050          11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARG--ITINTAHVEYETANRHYAHVDCPGHADY   88 (394)
T ss_pred             CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcC--ceeccceeEEecCCceEEeccCCChHHH
Confidence            358999999999999999988751                1122333344  4445555555555567899999999999


Q ss_pred             ccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccCc---CHHHHHHHHHHcCC-
Q 028466           72 RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQV---SIEEGEAKARELNV-  146 (208)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~---~~~~~~~~~~~~~~-  146 (208)
                      -........+.|+.|+|+.+.+. .+.+..+.+...++.   .+| ++++.||+|+.++.++   -..+++.+..+++. 
T Consensus        89 vKNMItgAaqmDgAILVVsA~dG-pmPqTrEHiLlarqv---Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~  164 (394)
T COG0050          89 VKNMITGAAQMDGAILVVAATDG-PMPQTREHILLARQV---GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP  164 (394)
T ss_pred             HHHHhhhHHhcCccEEEEEcCCC-CCCcchhhhhhhhhc---CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence            99888888999999999999873 233333333333332   354 6677899999875443   24566777777753 


Q ss_pred             ----eEEEeecCC-CC-------CHHHHHHHHHHHcC
Q 028466          147 ----MFIETSAKA-GF-------NIKALFRKIAAALP  171 (208)
Q Consensus       147 ----~~~~~S~~~-~~-------~v~~~~~~l~~~~~  171 (208)
                          +++.-|++. .+       .+.++++.+-.+++
T Consensus       165 gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip  201 (394)
T COG0050         165 GDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP  201 (394)
T ss_pred             CCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence                566666653 22       24555555555553

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.28  E-value=5.5e-11  Score=91.30  Aligned_cols=143  Identities=13%  Similarity=0.209  Sum_probs=78.4

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCC----------ccceeeeeeeEEEEEECCeEEEEEEEecCCchh--------
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------   70 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------   70 (208)
                      .++|+|+|.+|+|||||+|.|++......          ...+..+......+.-++..+.+.|+||||...        
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            58999999999999999999987654322          112333444445556677788999999999332        


Q ss_pred             ----------hccchhh---------hhccCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466           71 ----------FRSLIPS---------YIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDKR  130 (208)
Q Consensus        71 ----------~~~~~~~---------~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~  130 (208)
                                |......         .-..+|++++.++++.. .+..+ ...+..+.    ..+++|-|+.|.|.....
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls----~~vNvIPvIaKaD~lt~~  158 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLS----KRVNVIPVIAKADTLTPE  158 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHT----TTSEEEEEESTGGGS-HH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhc----ccccEEeEEecccccCHH
Confidence                      1110000         01146899999988642 12211 12223332    358899999999986433


Q ss_pred             C--cCHHHHHHHHHHcCCeEEEeecCCC
Q 028466          131 Q--VSIEEGEAKARELNVMFIETSAKAG  156 (208)
Q Consensus       131 ~--~~~~~~~~~~~~~~~~~~~~S~~~~  156 (208)
                      +  .....+...+..+++.+|.......
T Consensus       159 el~~~k~~i~~~l~~~~I~~f~f~~~~~  186 (281)
T PF00735_consen  159 ELQAFKQRIREDLEENNIKIFDFPEDDD  186 (281)
T ss_dssp             HHHHHHHHHHHHHHHTT--S--------
T ss_pred             HHHHHHHHHHHHHHHcCceeeccccccc
Confidence            2  2345666777778887776554443

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.28  E-value=4.3e-11  Score=88.99  Aligned_cols=116  Identities=20%  Similarity=0.200  Sum_probs=67.4

Q ss_pred             EEEEEEecCCchhh------ccchhhhhc--cCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466           58 VRLQLWDTAGQERF------RSLIPSYIR--DSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVD  128 (208)
Q Consensus        58 ~~~~i~D~~G~~~~------~~~~~~~~~--~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~  128 (208)
                      +.+.++||||+-+.      ..+....+.  .--++++|.|.....+... +-..+....-......|+|++.||+|+.+
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d  195 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSD  195 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccc
Confidence            45889999997532      112211222  3356777888754322222 22222222333346799999999999864


Q ss_pred             cc-----CcCHHHHHHHHHH---------------------cCCeEEEeecCCCCCHHHHHHHHHHHcCCC
Q 028466          129 KR-----QVSIEEGEAKARE---------------------LNVMFIETSAKAGFNIKALFRKIAAALPGM  173 (208)
Q Consensus       129 ~~-----~~~~~~~~~~~~~---------------------~~~~~~~~S~~~~~~v~~~~~~l~~~~~~~  173 (208)
                      ..     --+++..++...+                     .++..+-+|+.+|.|++++|..+.+.+.+.
T Consensus       196 ~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy  266 (366)
T KOG1532|consen  196 SEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY  266 (366)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence            31     0011111111111                     046789999999999999999998876443

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.26  E-value=3.3e-10  Score=89.59  Aligned_cols=158  Identities=16%  Similarity=0.225  Sum_probs=96.2

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcC----CCCC------------Cccce---eeee--e---eEEEEE-ECCeEEEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYD----KFDN------------TYQAT---IGID--F---LSKTMY-LEDRTVRLQLW   63 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~----~~~~------------~~~~~---~~~~--~---~~~~~~-~~~~~~~~~i~   63 (208)
                      ++-|.|+|+-++|||||+|+|.+.    +...            ...++   .|++  +   ...++. .++...++.++
T Consensus        17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI   96 (492)
T TIGR02836        17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV   96 (492)
T ss_pred             cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence            688999999999999999999877    2221            11122   1111  1   112222 23445689999


Q ss_pred             ecCCchhhcc-------c----------------------hhhhhc-cCCEEEEEE-eCC-----ChhhHHhHHHHHHHH
Q 028466           64 DTAGQERFRS-------L----------------------IPSYIR-DSSVAVIVY-DVA-----SRQSFLNTTKWVEEV  107 (208)
Q Consensus        64 D~~G~~~~~~-------~----------------------~~~~~~-~~d~~i~v~-d~~-----~~~s~~~~~~~~~~~  107 (208)
                      ||+|...-..       .                      +...+. .+|+.|+|. |.+     .....+.-..++..+
T Consensus        97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL  176 (492)
T TIGR02836        97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL  176 (492)
T ss_pred             ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence            9999432100       0                      233455 789999988 764     112223345555555


Q ss_pred             HhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCC--CCCHHHHHHHHHHHcC
Q 028466          108 RTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKA--GFNIKALFRKIAAALP  171 (208)
Q Consensus       108 ~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~--~~~v~~~~~~l~~~~~  171 (208)
                      ..   .++|+++|+|+.|....  ......+.+...++++++.+|+..  .+.+..+++.++..++
T Consensus       177 k~---~~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~EFP  237 (492)
T TIGR02836       177 KE---LNKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYEFP  237 (492)
T ss_pred             Hh---cCCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhcCC
Confidence            54   46999999999994322  133444566677888888888754  4556666666655543

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=5.8e-11  Score=93.71  Aligned_cols=155  Identities=21%  Similarity=0.156  Sum_probs=110.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCC---CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      -|...|+-..|||||+..+.+..-   ++...+.++++.........+.  .+.|+|.||++++-......+...|..++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~--~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG--VMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC--ceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            467789999999999999986543   4455567777777766666553  79999999999999988888899999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc---CCeEEEeecCCCCCHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL---NVMFIETSAKAGFNIKALFR  164 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~S~~~~~~v~~~~~  164 (208)
                      |+++++  ...........+.+..+ ....++|+||.|..+.. ......++.....   +.+++.+|+.+++|++++.+
T Consensus        80 vV~~de--Gl~~qtgEhL~iLdllg-i~~giivltk~D~~d~~-r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~  155 (447)
T COG3276          80 VVAADE--GLMAQTGEHLLILDLLG-IKNGIIVLTKADRVDEA-RIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKN  155 (447)
T ss_pred             EEeCcc--CcchhhHHHHHHHHhcC-CCceEEEEeccccccHH-HHHHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence            999963  22222111222333332 23457888999996542 1122223333322   46789999999999999999


Q ss_pred             HHHHHcC
Q 028466          165 KIAAALP  171 (208)
Q Consensus       165 ~l~~~~~  171 (208)
                      .|.++..
T Consensus       156 ~l~~L~~  162 (447)
T COG3276         156 ELIDLLE  162 (447)
T ss_pred             HHHHhhh
Confidence            9999885

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.21  E-value=9.9e-12  Score=88.19  Aligned_cols=53  Identities=32%  Similarity=0.315  Sum_probs=45.2

Q ss_pred             EEEEeCCCCcCccCcCHHHHHHHHHHcC--CeEEEeecCCCCCHHHHHHHHHHHc
Q 028466          118 VLVGNKTDLVDKRQVSIEEGEAKARELN--VMFIETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       118 ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~~  170 (208)
                      ++|+||.|+.+.-..+.+...+.+++.+  .+++++|.++|+|++++++|+....
T Consensus       146 llVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         146 LLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             EEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            6788999998877777777777777764  7999999999999999999998654

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.21  E-value=1.8e-10  Score=89.66  Aligned_cols=104  Identities=18%  Similarity=0.102  Sum_probs=65.4

Q ss_pred             EEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHH
Q 028466           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEE  136 (208)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~  136 (208)
                      ++.+.|+||+|.....   ...+..+|.++++....   +-+++......+.     ..|.++|+||+|+.+........
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~  194 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIAR  194 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHH
Confidence            4678999999964222   23467789988886543   3334333333332     36678999999986543211100


Q ss_pred             H------HHHHH---HcCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          137 G------EAKAR---ELNVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       137 ~------~~~~~---~~~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      .      .....   ....+++++|++++.|+++++++|.+...
T Consensus       195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            0      11111   12246899999999999999999998754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.21  E-value=2.9e-11  Score=91.82  Aligned_cols=151  Identities=14%  Similarity=0.126  Sum_probs=103.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCch---------hhccchhhhh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLIPSYI   79 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~   79 (208)
                      ..-|.+||-.|+|||||+++|+.-.......-.-+.|.........++. .+.+.||.|.-         .|..... ..
T Consensus       178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATLe-eV  255 (410)
T KOG0410|consen  178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATLE-EV  255 (410)
T ss_pred             CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHHH-HH
Confidence            3568999999999999999999666555545555555555555554443 68899999932         2333332 36


Q ss_pred             ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe----EEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCC
Q 028466           80 RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI----IVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKA  155 (208)
Q Consensus        80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~----iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  155 (208)
                      ..+|+++.|.|++.|+.-.+....+..+.+..-...|    ++=|-||.|..+.....+        .++  -+.+|+++
T Consensus       256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E--------~n~--~v~isalt  325 (410)
T KOG0410|consen  256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE--------KNL--DVGISALT  325 (410)
T ss_pred             hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc--------cCC--cccccccc
Confidence            7899999999999997766666666666655433233    455668888754322111        112  57789999


Q ss_pred             CCCHHHHHHHHHHHcC
Q 028466          156 GFNIKALFRKIAAALP  171 (208)
Q Consensus       156 ~~~v~~~~~~l~~~~~  171 (208)
                      |+|++++.+.+-..+.
T Consensus       326 gdgl~el~~a~~~kv~  341 (410)
T KOG0410|consen  326 GDGLEELLKAEETKVA  341 (410)
T ss_pred             CccHHHHHHHHHHHhh
Confidence            9999999999887753

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.20  E-value=1e-09  Score=85.48  Aligned_cols=122  Identities=16%  Similarity=0.273  Sum_probs=83.5

Q ss_pred             EEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhh----------HHhHHHHHHHHHhhcC-CCCe
Q 028466           48 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQS----------FLNTTKWVEEVRTERG-SDVI  116 (208)
Q Consensus        48 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~-~~~~  116 (208)
                      ...+.+.+  ..+.++|.+||...+.-|...+.+++++|||.++++.+.          +.+.......+..... .+.+
T Consensus       187 e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~ts  264 (354)
T KOG0082|consen  187 EVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTS  264 (354)
T ss_pred             EEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCc
Confidence            33444444  678999999999999999999999999999999986432          2223333444443332 6789


Q ss_pred             EEEEEeCCCCcCcc---------------CcCHHHHHHHHHHc----------CCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          117 IVLVGNKTDLVDKR---------------QVSIEEGEAKAREL----------NVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       117 iivv~nK~D~~~~~---------------~~~~~~~~~~~~~~----------~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      +|++.||.|+.++.               ....+++..+....          .+-++.+.|.+..+|+.+|+.+.+.+.
T Consensus       265 iiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii  344 (354)
T KOG0082|consen  265 IILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTII  344 (354)
T ss_pred             EEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHH
Confidence            99999999985320               01223332222211          244677799999999999999988874

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.18  E-value=5.3e-10  Score=93.08  Aligned_cols=119  Identities=13%  Similarity=0.156  Sum_probs=73.0

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCc-cceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc----------chh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------LIP   76 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~   76 (208)
                      ..++|+|+|.+|+||||++|.|++....... ....+..........++  ..+.|+||||......          ...
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik  194 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK  194 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence            4589999999999999999999987643222 11222223222233444  5799999999664311          112


Q ss_pred             hhhc--cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCC--CeEEEEEeCCCCcC
Q 028466           77 SYIR--DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD--VIIVLVGNKTDLVD  128 (208)
Q Consensus        77 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~  128 (208)
                      .++.  ..|++|+|..+........-..++..+....+..  ..+|||.|+.|..+
T Consensus       195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            2333  4799999998763222112234555555555432  34788889999764

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>smart00053 DYNc Dynamin, GTPase

Probab=99.15  E-value=6.4e-10  Score=83.25  Aligned_cols=68  Identities=22%  Similarity=0.276  Sum_probs=42.5

Q ss_pred             EEEEEEecCCchh-------------hccchhhhhcc-CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeC
Q 028466           58 VRLQLWDTAGQER-------------FRSLIPSYIRD-SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK  123 (208)
Q Consensus        58 ~~~~i~D~~G~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK  123 (208)
                      ..++++|+||...             ...+...|+++ .+++++|.|+...-.-.........+.   ....++++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence            4688999999642             22345667774 569999999864211111122222222   245889999999


Q ss_pred             CCCcC
Q 028466          124 TDLVD  128 (208)
Q Consensus       124 ~D~~~  128 (208)
                      .|..+
T Consensus       202 ~D~~~  206 (240)
T smart00053      202 LDLMD  206 (240)
T ss_pred             CCCCC
Confidence            99864

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=5.6e-10  Score=88.06  Aligned_cols=137  Identities=22%  Similarity=0.247  Sum_probs=91.4

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhh--cC--------------CCCCC----ccceeeeeeeEEEEEECCeEEEEEEEecC
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFM--YD--------------KFDNT----YQATIGIDFLSKTMYLEDRTVRLQLWDTA   66 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~--~~--------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   66 (208)
                      .++-..+|+-+|.+|||||-+.|+  ++              .+..+    .+...++.+.+..+.++.....+++.|||
T Consensus        10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP   89 (528)
T COG4108          10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP   89 (528)
T ss_pred             hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence            356778999999999999999986  11              11111    11123344444444444445789999999


Q ss_pred             CchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC
Q 028466           67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV  146 (208)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~  146 (208)
                      ||++|..-+-+.+.-+|..+.|+|+.  ..++....-+-.+...  .+.||+-++||.|.....  ..+.+.+....+++
T Consensus        90 GHeDFSEDTYRtLtAvDsAvMVIDaA--KGiE~qT~KLfeVcrl--R~iPI~TFiNKlDR~~rd--P~ELLdEiE~~L~i  163 (528)
T COG4108          90 GHEDFSEDTYRTLTAVDSAVMVIDAA--KGIEPQTLKLFEVCRL--RDIPIFTFINKLDREGRD--PLELLDEIEEELGI  163 (528)
T ss_pred             CccccchhHHHHHHhhheeeEEEecc--cCccHHHHHHHHHHhh--cCCceEEEeeccccccCC--hHHHHHHHHHHhCc
Confidence            99999998888888999999999997  4455433223333333  469999999999975432  24445555556665


Q ss_pred             eEE
Q 028466          147 MFI  149 (208)
Q Consensus       147 ~~~  149 (208)
                      ..+
T Consensus       164 ~~~  166 (528)
T COG4108         164 QCA  166 (528)
T ss_pred             cee
Confidence            544

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=2e-09  Score=83.87  Aligned_cols=84  Identities=17%  Similarity=0.199  Sum_probs=60.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC--------------C--eEEEEEEEecCCch----
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE--------------D--RTVRLQLWDTAGQE----   69 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------~--~~~~~~i~D~~G~~----   69 (208)
                      +++.|||.||||||||+|.++.........|..|++.....+...              .  ....+.|+|.+|.-    
T Consensus         3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs   82 (372)
T COG0012           3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS   82 (372)
T ss_pred             ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence            789999999999999999999887654555666665544433221              1  12368999999932    


Q ss_pred             ---hhccchhhhhccCCEEEEEEeCCC
Q 028466           70 ---RFRSLIPSYIRDSSVAVIVYDVAS   93 (208)
Q Consensus        70 ---~~~~~~~~~~~~~d~~i~v~d~~~   93 (208)
                         ........-++.+|+++.|+++..
T Consensus        83 ~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          83 KGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             cCCCcchHHHHhhhhcCeEEEEEEecC
Confidence               344455566899999999999873

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.11  E-value=8.2e-10  Score=84.34  Aligned_cols=55  Identities=24%  Similarity=0.276  Sum_probs=40.4

Q ss_pred             CeEEEEEeCCCCcCccCcCHHHHHHHHHHc--CCeEEEeecCCCCCHHHHHHHHHHH
Q 028466          115 VIIVLVGNKTDLVDKRQVSIEEGEAKAREL--NVMFIETSAKAGFNIKALFRKIAAA  169 (208)
Q Consensus       115 ~~iivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~S~~~~~~v~~~~~~l~~~  169 (208)
                      ..-++|+||+|+.+..........+..+..  +++++++|+++++|++++.+||.+.
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            334777899999753322344444555544  5789999999999999999999874

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.10  E-value=1.4e-10  Score=86.35  Aligned_cols=101  Identities=17%  Similarity=0.141  Sum_probs=64.8

Q ss_pred             EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHH
Q 028466           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEG  137 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~  137 (208)
                      +.++|++|.|...-...   ...-+|.+++|.-..-.+.++.++.-+.++.+        ++|+||.|..... ....++
T Consensus       122 ~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD--------i~vVNKaD~~gA~-~~~~~l  189 (266)
T PF03308_consen  122 FDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKAGIMEIAD--------IFVVNKADRPGAD-RTVRDL  189 (266)
T ss_dssp             -SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S--------EEEEE--SHHHHH-HHHHHH
T ss_pred             CCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhhhhhhhcc--------EEEEeCCChHHHH-HHHHHH
Confidence            67889999885443322   35678999999988766666655554444532        7777999964332 223333


Q ss_pred             HHHHHHc-------CCeEEEeecCCCCCHHHHHHHHHHHc
Q 028466          138 EAKAREL-------NVMFIETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       138 ~~~~~~~-------~~~~~~~S~~~~~~v~~~~~~l~~~~  170 (208)
                      +......       ..+++.+||.++.|++++++.|.+..
T Consensus       190 ~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  190 RSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             HHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3333322       25899999999999999999998764

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd01900 YchF YchF subfamily

Probab=99.10  E-value=2.8e-10  Score=86.78  Aligned_cols=81  Identities=16%  Similarity=0.171  Sum_probs=57.6

Q ss_pred             EEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeE---------------EEEEEEecCCchh------
Q 028466           12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQER------   70 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~------   70 (208)
                      |+|+|.+++|||||+|+|++........+..|++.....+.+.+..               .++.++|+||.-.      
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            5799999999999999999887755445666666555555554321               2589999999432      


Q ss_pred             -hccchhhhhccCCEEEEEEeCC
Q 028466           71 -FRSLIPSYIRDSSVAVIVYDVA   92 (208)
Q Consensus        71 -~~~~~~~~~~~~d~~i~v~d~~   92 (208)
                       ........++.+|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence             1122334467899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.09  E-value=1.2e-09  Score=79.98  Aligned_cols=155  Identities=12%  Similarity=0.159  Sum_probs=94.9

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCC---------CccceeeeeeeEEEEEECCeEEEEEEEecCCchhh-------
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN---------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------   71 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------   71 (208)
                      -.++|+|||.+|.|||||+|++...+...         ....+.++......+.-++...+++++||||..++       
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW  124 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW  124 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence            36899999999999999999987543321         22334455555566666777789999999993321       


Q ss_pred             -----------cc--------chhhhhcc--CCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCc--
Q 028466           72 -----------RS--------LIPSYIRD--SSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLV--  127 (208)
Q Consensus        72 -----------~~--------~~~~~~~~--~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~--  127 (208)
                                 ..        .....+.+  ++.+++-+..+. .++..+ .+++..+.    .-+.++-|+-|.|-.  
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt----~vvNvvPVIakaDtlTl  199 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLT----EVVNVVPVIAKADTLTL  199 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHh----hhheeeeeEeecccccH
Confidence                       11        11112333  455555555543 222222 12222222    225577777999964  


Q ss_pred             CccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466          128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      +++.....++++....+++.+|+-.+.+.+.=+..++.-.
T Consensus       200 eEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kv  239 (336)
T KOG1547|consen  200 EERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKV  239 (336)
T ss_pred             HHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHH
Confidence            3444446677777888899999988887765555444433

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=1.3e-09  Score=90.00  Aligned_cols=117  Identities=21%  Similarity=0.255  Sum_probs=82.5

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCc-----------------cceeeeeeeEEEEE---ECCeEEEEEEEecC
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-----------------QATIGIDFLSKTMY---LEDRTVRLQLWDTA   66 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~---~~~~~~~~~i~D~~   66 (208)
                      ....++.++|+-++|||+|+..|....++.-.                 ++..++.....++.   ..++.+-+++.|||
T Consensus       126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP  205 (971)
T KOG0468|consen  126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP  205 (971)
T ss_pred             ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence            45678999999999999999999866553321                 11122222222222   24566789999999


Q ss_pred             CchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466           67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV  127 (208)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~  127 (208)
                      ||-+|.......++.+|++++|+|+...-.+ ..+..+....+   .+.|+++|+||+|..
T Consensus       206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVml-ntEr~ikhaiq---~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  206 GHVNFSDETTASLRLSDGVVLVVDVAEGVML-NTERIIKHAIQ---NRLPIVVVINKVDRL  262 (971)
T ss_pred             CcccchHHHHHHhhhcceEEEEEEcccCcee-eHHHHHHHHHh---ccCcEEEEEehhHHH
Confidence            9999999999999999999999999753222 23333333332   469999999999963

>cd01855 YqeH YqeH

Probab=99.08  E-value=8.1e-10  Score=80.46  Aligned_cols=95  Identities=24%  Similarity=0.279  Sum_probs=66.2

Q ss_pred             hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHH-----HHc
Q 028466           70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKA-----REL  144 (208)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~  144 (208)
                      .+...+..+++.+|++++|+|++++..-     |...+... ..+.|+++|+||+|+.+.. ........+.     ...
T Consensus        23 ~~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~   95 (190)
T cd01855          23 FILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGL   95 (190)
T ss_pred             HHHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhc
Confidence            3577888889999999999999875311     11122111 2358999999999986432 2233333333     223


Q ss_pred             CC---eEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          145 NV---MFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       145 ~~---~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      +.   .++.+|++++.|++++++.|.+.++
T Consensus        96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          96 GLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             CCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            32   6899999999999999999999774

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.06  E-value=2.3e-09  Score=81.08  Aligned_cols=103  Identities=17%  Similarity=0.120  Sum_probs=68.2

Q ss_pred             EEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHH
Q 028466           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEE  136 (208)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~  136 (208)
                      ++.++|+.|.|...-...   ...-+|.+++|.-..-.+..+.++.-+.++..        |+|+||.|.... +....+
T Consensus       143 G~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD--------i~vINKaD~~~A-~~a~r~  210 (323)
T COG1703         143 GYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIAD--------IIVINKADRKGA-EKAARE  210 (323)
T ss_pred             CCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhhh--------eeeEeccChhhH-HHHHHH
Confidence            367889999986544332   24568999998876655666666655555543        777899996432 222222


Q ss_pred             HHHHHHHc---------CCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          137 GEAKAREL---------NVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       137 ~~~~~~~~---------~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      .....+..         ..+++.+|+..++|++++++.|.+...
T Consensus       211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~  254 (323)
T COG1703         211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK  254 (323)
T ss_pred             HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence            22222211         247999999999999999999998764

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=1.5e-09  Score=83.18  Aligned_cols=144  Identities=19%  Similarity=0.170  Sum_probs=103.3

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhc----------CCCC----CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMY----------DKFD----NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS   73 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   73 (208)
                      +-++|.-+|+-..|||||-.+++.          .+|.    ...+...++++....+.+......+.-.|+|||.+|-.
T Consensus        53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK  132 (449)
T KOG0460|consen   53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK  132 (449)
T ss_pred             CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence            357899999999999999987751          1111    12234455667777777777777888899999999999


Q ss_pred             chhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC---cCHHHHHHHHHHcC-----
Q 028466           74 LIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ---VSIEEGEAKARELN-----  145 (208)
Q Consensus        74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~~-----  145 (208)
                      .......+.|+.|+|+.++|. .+.+.++.+...++..-  ..+++.+||.|++++.+   .-+-+++++..+++     
T Consensus       133 NMItGaaqMDGaILVVaatDG-~MPQTrEHlLLArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~  209 (449)
T KOG0460|consen  133 NMITGAAQMDGAILVVAATDG-PMPQTREHLLLARQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDN  209 (449)
T ss_pred             HhhcCccccCceEEEEEcCCC-CCcchHHHHHHHHHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            888888899999999999984 45555555555554431  34777789999985533   33456777777775     


Q ss_pred             CeEEEeecC
Q 028466          146 VMFIETSAK  154 (208)
Q Consensus       146 ~~~~~~S~~  154 (208)
                      ++++.-||+
T Consensus       210 ~PvI~GSAL  218 (449)
T KOG0460|consen  210 TPVIRGSAL  218 (449)
T ss_pred             CCeeecchh
Confidence            467776654

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.04  E-value=2e-09  Score=78.85  Aligned_cols=165  Identities=16%  Similarity=0.180  Sum_probs=96.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc---chhhhhccCCEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---LIPSYIRDSSVAV   86 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~~i   86 (208)
                      .+|+++|...+||||+-+....+..+.+... .+-+-....-.+.+.-+.+.+||.||+-.+-.   -....++++.++|
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlf-lESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi  106 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLF-LESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI  106 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCCCceeE-eeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence            5699999999999999887665543332111 11000011111223446799999999875433   2345689999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcC--CCCeEEEEEeCCCCcCcc-CcC-----HHHHHHHHHHcC-----CeEEEeec
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLVDKR-QVS-----IEEGEAKARELN-----VMFIETSA  153 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~-~~~-----~~~~~~~~~~~~-----~~~~~~S~  153 (208)
                      +|+|+.+ +-.+.+......+....+  ++..+-|.+.|.|-..+. .+.     ..+......+.+     +.|+-+|.
T Consensus       107 fvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI  185 (347)
T KOG3887|consen  107 FVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI  185 (347)
T ss_pred             EEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence            9999975 445555555555544443  567788889999965331 111     112222222222     45777777


Q ss_pred             CCCCCHHHHHHHHHHHcCCCccC
Q 028466          154 KAGFNIKALFRKIAAALPGMETL  176 (208)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~~~~  176 (208)
                      .+..-.+.+-..+.+++++++..
T Consensus       186 yDHSIfEAFSkvVQkLipqLptL  208 (347)
T KOG3887|consen  186 YDHSIFEAFSKVVQKLIPQLPTL  208 (347)
T ss_pred             cchHHHHHHHHHHHHHhhhchhH
Confidence            77654444444445556655543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.03  E-value=9.2e-10  Score=88.95  Aligned_cols=159  Identities=21%  Similarity=0.407  Sum_probs=119.0

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      ..++|+.|||..++|||+|+.+++.+.|.+...+..+  .+.+++..++....+.+.|.+|...     ..|...+|++|
T Consensus        28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavI  100 (749)
T KOG0705|consen   28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVV  100 (749)
T ss_pred             cchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCch-----hhhhhhccceE
Confidence            4689999999999999999999999998766544444  3455556677777888889887433     45678899999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcC--ccCcCHHHHHHHHHHcC-CeEEEeecCCCCCHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVD--KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKAL  162 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~--~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~  162 (208)
                      |||.+.+..+++.+..+...+..+.. ...|+++++++.-...  .+....++..+++.+++ +.+|++++..|-++...
T Consensus       101 fvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rv  180 (749)
T KOG0705|consen  101 FVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERV  180 (749)
T ss_pred             EEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHH
Confidence            99999999999988877776654443 4567777766544322  23344556666666554 78999999999999999


Q ss_pred             HHHHHHHcCC
Q 028466          163 FRKIAAALPG  172 (208)
Q Consensus       163 ~~~l~~~~~~  172 (208)
                      |..+...+-.
T Consensus       181 f~~~~~k~i~  190 (749)
T KOG0705|consen  181 FQEVAQKIVQ  190 (749)
T ss_pred             HHHHHHHHHH
Confidence            9998877533

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.03  E-value=1.9e-08  Score=74.33  Aligned_cols=158  Identities=13%  Similarity=0.141  Sum_probs=102.6

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh-------hccchhhhhc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIR   80 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~   80 (208)
                      -.-+|+++|.|.+|||||+..++.-+.........+.+.....+.+++.  .+.+.|.||.-.       ..+.+....+
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavAr  138 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVAR  138 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEee
Confidence            3579999999999999999999876654444455567788888888884  588999999432       2334555678


Q ss_pred             cCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCe-EEEEEeCCCCc------CccCcCHHHHHHHHHHcCCeEEEee
Q 028466           81 DSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVI-IVLVGNKTDLV------DKRQVSIEEGEAKARELNVMFIETS  152 (208)
Q Consensus        81 ~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~-iivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~S  152 (208)
                      .+|.++.|.|++..+.-.. ++..++.+--..+..+| +.+-..|..-.      +-...++..+.....++.+.=-++-
T Consensus       139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl  218 (364)
T KOG1486|consen  139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL  218 (364)
T ss_pred             cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence            8999999999986554433 44445544333333344 44433444322      1234456677777778766444444


Q ss_pred             cCCCCCHHHHHHHHH
Q 028466          153 AKAGFNIKALFRKIA  167 (208)
Q Consensus       153 ~~~~~~v~~~~~~l~  167 (208)
                      -.+...++++.+.+.
T Consensus       219 ~ReD~t~DdfIDvi~  233 (364)
T KOG1486|consen  219 FREDCTVDDFIDVIE  233 (364)
T ss_pred             EecCCChHHHHHHHh
Confidence            455566666666653

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=2.8e-09  Score=82.59  Aligned_cols=121  Identities=20%  Similarity=0.281  Sum_probs=81.5

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCcc-ceeeeeeeEEEEEECCeE-----------------------------
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-ATIGIDFLSKTMYLEDRT-----------------------------   57 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------------------------   57 (208)
                      .+.=|+++|+-..||||||+.|+...++..+. +..+.++....+..+..+                             
T Consensus        57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf  136 (532)
T KOG1954|consen   57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF  136 (532)
T ss_pred             cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence            34569999999999999999999999976443 334445555544333211                             


Q ss_pred             ----------EEEEEEecCCchh-----------hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe
Q 028466           58 ----------VRLQLWDTAGQER-----------FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI  116 (208)
Q Consensus        58 ----------~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  116 (208)
                                -.++|+||||.-.           |.....-+...+|.+|++||+-..+--++....+..++   +..-.
T Consensus       137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~Edk  213 (532)
T KOG1954|consen  137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK---GHEDK  213 (532)
T ss_pred             HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh---CCcce
Confidence                      2589999999432           33444556788999999999864443344444444444   44455


Q ss_pred             EEEEEeCCCCcCccC
Q 028466          117 IVLVGNKTDLVDKRQ  131 (208)
Q Consensus       117 iivv~nK~D~~~~~~  131 (208)
                      +-||.||.|+++..+
T Consensus       214 iRVVLNKADqVdtqq  228 (532)
T KOG1954|consen  214 IRVVLNKADQVDTQQ  228 (532)
T ss_pred             eEEEeccccccCHHH
Confidence            677789999976544

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.99  E-value=5.3e-09  Score=81.15  Aligned_cols=138  Identities=14%  Similarity=0.230  Sum_probs=88.8

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCC----------ccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc----
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----   73 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----   73 (208)
                      -.++|+++|++|.|||||+|.|++......          ..++..+......+..++....++++||||-.++-.    
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            468999999999999999999987644222          235556667777777788888999999999443111    


Q ss_pred             ----------chhhh------------hc--cCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466           74 ----------LIPSY------------IR--DSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVD  128 (208)
Q Consensus        74 ----------~~~~~------------~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~  128 (208)
                                ....|            +.  .+|++++-+..+. .++..+ ...+..+.    ..+.+|=|+.|.|..-
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~lT  176 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLS----KRVNLIPVIAKADTLT  176 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHh----cccCeeeeeeccccCC
Confidence                      11111            11  3567777776653 223222 12223332    3466888889999864


Q ss_pred             ccC--cCHHHHHHHHHHcCCeEEE
Q 028466          129 KRQ--VSIEEGEAKARELNVMFIE  150 (208)
Q Consensus       129 ~~~--~~~~~~~~~~~~~~~~~~~  150 (208)
                      ..+  .....+.+....+++++|.
T Consensus       177 ~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         177 DDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             HHHHHHHHHHHHHHHHHhCCceeC
Confidence            332  3355667777788888874

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.97  E-value=2e-08  Score=81.11  Aligned_cols=113  Identities=17%  Similarity=0.225  Sum_probs=77.8

Q ss_pred             EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChh----------hHHhHHHHHHHHHhh-cCCCCeEEEEEeCCCC
Q 028466           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ----------SFLNTTKWVEEVRTE-RGSDVIIVLVGNKTDL  126 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~  126 (208)
                      ..+.++|.+|+...+..|..++.+++++|||+++++.+          .+.+....+..+... ...+.|+||+.||.|+
T Consensus       236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred             cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence            57899999999999999999999999999999987532          233333333443332 2257999999999997


Q ss_pred             cCc-----------------c-CcCHHHHHHHHHHc------------CCeEEEeecCCCCCHHHHHHHHHHHc
Q 028466          127 VDK-----------------R-QVSIEEGEAKAREL------------NVMFIETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       127 ~~~-----------------~-~~~~~~~~~~~~~~------------~~~~~~~S~~~~~~v~~~~~~l~~~~  170 (208)
                      ..+                 . ......+..+....            .+.++.++|.+.+++..+|+.+.+.+
T Consensus       316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            421                 0 12344444444432            12466888888999999998887653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>cd01859 MJ1464 MJ1464

Probab=98.96  E-value=2.7e-09  Score=75.24  Aligned_cols=96  Identities=24%  Similarity=0.224  Sum_probs=65.1

Q ss_pred             hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEE
Q 028466           71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIE  150 (208)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  150 (208)
                      ++.+....++++|++|+|+|++++..... ..+...+.   ..+.|+++|+||+|+.+....  .....+....+.+++.
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~   75 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence            34566777888999999999987533222 12222221   135899999999998542211  1111233345678999


Q ss_pred             eecCCCCCHHHHHHHHHHHcCC
Q 028466          151 TSAKAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       151 ~S~~~~~~v~~~~~~l~~~~~~  172 (208)
                      +|++++.|++++++.|.+.++.
T Consensus        76 iSa~~~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          76 VSAKERLGTKILRRTIKELAKI   97 (156)
T ss_pred             EEccccccHHHHHHHHHHHHhh
Confidence            9999999999999999988753

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.91  E-value=7.2e-09  Score=81.97  Aligned_cols=94  Identities=16%  Similarity=0.279  Sum_probs=68.2

Q ss_pred             ccchhhhhccCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEE
Q 028466           72 RSLIPSYIRDSSVAVIVYDVASRQ-SFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIE  150 (208)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  150 (208)
                      ..+.+..+.++|.+++|+|+.++. ....+..|+..+..   .++|+++|+||+|+....+  ...........++.++.
T Consensus        80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~  154 (352)
T PRK12289         80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLF  154 (352)
T ss_pred             cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEE
Confidence            334555689999999999998765 33355666665532   4689999999999964322  12223334566889999


Q ss_pred             eecCCCCCHHHHHHHHHHHc
Q 028466          151 TSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       151 ~S~~~~~~v~~~~~~l~~~~  170 (208)
                      +|++++.|++++++.|...+
T Consensus       155 iSA~tg~GI~eL~~~L~~ki  174 (352)
T PRK12289        155 ISVETGIGLEALLEQLRNKI  174 (352)
T ss_pred             EEcCCCCCHHHHhhhhccce
Confidence            99999999999999997654

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=2.6e-08  Score=77.87  Aligned_cols=143  Identities=15%  Similarity=0.235  Sum_probs=89.4

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCC---------ccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc------
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT---------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------   73 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------   73 (208)
                      .+.++++|++|.|||||+|.|+...+..+         ...+..+......+.-++..+.++++||||-.+.-.      
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~  100 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR  100 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence            59999999999999999999886644322         122444555555566677778999999999432100      


Q ss_pred             -------------------chhhhhc--cCCEEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCccC
Q 028466           74 -------------------LIPSYIR--DSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKRQ  131 (208)
Q Consensus        74 -------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~  131 (208)
                                         +.+..+.  .+|++++-+..+.. ++..+. ..+..+.    ..+.+|-|+.|.|.....+
T Consensus       101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~E  175 (366)
T KOG2655|consen  101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKDE  175 (366)
T ss_pred             hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeeccccCCHHH
Confidence                               1111222  35677777766532 222221 1222222    3477888889999864333


Q ss_pred             --cCHHHHHHHHHHcCCeEEEeecCCC
Q 028466          132 --VSIEEGEAKARELNVMFIETSAKAG  156 (208)
Q Consensus       132 --~~~~~~~~~~~~~~~~~~~~S~~~~  156 (208)
                        .....+.+.+...++.+|.......
T Consensus       176 l~~~K~~I~~~i~~~nI~vf~fp~~~~  202 (366)
T KOG2655|consen  176 LNQFKKRIRQDIEEHNIKVFDFPTDES  202 (366)
T ss_pred             HHHHHHHHHHHHHHcCcceecCCCCcc
Confidence              3355667777778888887776654

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.89  E-value=3.2e-08  Score=77.24  Aligned_cols=162  Identities=17%  Similarity=0.177  Sum_probs=100.2

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCC--------------ccceeeeeeeEEEEEECCe--------------
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT--------------YQATIGIDFLSKTMYLEDR--------------   56 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~--------------   56 (208)
                      +.+..+.+.+.|+-+.|||||.-.|..+...+.              ..+..+-+.+...+-+++.              
T Consensus       113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~  192 (527)
T COG5258         113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK  192 (527)
T ss_pred             CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence            345678999999999999999999886654321              1112222333333333322              


Q ss_pred             -------EEEEEEEecCCchhhccchhh--hhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466           57 -------TVRLQLWDTAGQERFRSLIPS--YIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV  127 (208)
Q Consensus        57 -------~~~~~i~D~~G~~~~~~~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~  127 (208)
                             .--+.|+||.||+.|-+.+.+  +-.+.|..+++..+++.  ...+......+...  ...|+|++++|+|+.
T Consensus       193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG--~~~~tkEHLgi~~a--~~lPviVvvTK~D~~  268 (527)
T COG5258         193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDG--VTKMTKEHLGIALA--MELPVIVVVTKIDMV  268 (527)
T ss_pred             hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCC--cchhhhHhhhhhhh--hcCCEEEEEEecccC
Confidence                   124789999999988765544  34568999999999863  33322222222222  369999999999997


Q ss_pred             CccCcC--HHHHH----------------------HHHHHcC---CeEEEeecCCCCCHHHHHHHHHHHc
Q 028466          128 DKRQVS--IEEGE----------------------AKARELN---VMFIETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       128 ~~~~~~--~~~~~----------------------~~~~~~~---~~~~~~S~~~~~~v~~~~~~l~~~~  170 (208)
                      ++....  .+++.                      ..+...+   ++++.+|+.+|+|++-+.+.+..+-
T Consensus       269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~Lp  338 (527)
T COG5258         269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLP  338 (527)
T ss_pred             cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhCC
Confidence            542111  11111                      1111222   4799999999999987766665443

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=3.6e-08  Score=80.47  Aligned_cols=139  Identities=12%  Similarity=0.192  Sum_probs=84.8

Q ss_pred             CCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCC-ccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhc
Q 028466            2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (208)
Q Consensus         2 ~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   80 (208)
                      .|-..++.+-++|+|++|+|||||++.|+..-.... ....-++      ....++..+++++.+|  .....+. ...+
T Consensus        62 tp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPi------TvvsgK~RRiTflEcp--~Dl~~mi-DvaK  132 (1077)
T COG5192          62 TPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPI------TVVSGKTRRITFLECP--SDLHQMI-DVAK  132 (1077)
T ss_pred             CcccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCce------EEeecceeEEEEEeCh--HHHHHHH-hHHH
Confidence            455667889999999999999999998875422111 0111111      1244666789999998  3333333 3467


Q ss_pred             cCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccCcCHHHHHHHH-HH------cCCeEEEe
Q 028466           81 DSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQVSIEEGEAKA-RE------LNVMFIET  151 (208)
Q Consensus        81 ~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~~~~~~~~~-~~------~~~~~~~~  151 (208)
                      -+|++++++|.+-  .|+- ..+++.-+..+   +.| ++-|++..|+...... ...++... ..      .|+.+|.+
T Consensus       133 IaDLVlLlIdgnf--GfEMETmEFLnil~~H---GmPrvlgV~ThlDlfk~~st-Lr~~KKrlkhRfWtEiyqGaKlFyl  206 (1077)
T COG5192         133 IADLVLLLIDGNF--GFEMETMEFLNILISH---GMPRVLGVVTHLDLFKNPST-LRSIKKRLKHRFWTEIYQGAKLFYL  206 (1077)
T ss_pred             hhheeEEEecccc--CceehHHHHHHHHhhc---CCCceEEEEeecccccChHH-HHHHHHHHhhhHHHHHcCCceEEEe
Confidence            7999999999884  3442 23334433333   344 6778899999654222 22222211 11      16788888


Q ss_pred             ecCC
Q 028466          152 SAKA  155 (208)
Q Consensus       152 S~~~  155 (208)
                      |...
T Consensus       207 sgV~  210 (1077)
T COG5192         207 SGVE  210 (1077)
T ss_pred             cccc
Confidence            8754

>PRK12288 GTPase RsgA; Reviewed

Probab=98.85  E-value=1.9e-08  Score=79.57  Aligned_cols=89  Identities=19%  Similarity=0.203  Sum_probs=67.4

Q ss_pred             hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc-CHHHHHHHHHHcCCeEEEeecCCCC
Q 028466           79 IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV-SIEEGEAKARELNVMFIETSAKAGF  157 (208)
Q Consensus        79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~S~~~~~  157 (208)
                      ..++|.+++|+++....++..+..|+..+..   .++|+++|+||+|+.+..+. ............+++++.+|++++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4679999999999877788888888775532   35888999999999654221 1222333445668899999999999


Q ss_pred             CHHHHHHHHHHHc
Q 028466          158 NIKALFRKIAAAL  170 (208)
Q Consensus       158 ~v~~~~~~l~~~~  170 (208)
                      |++++++.|...+
T Consensus       195 GideL~~~L~~ki  207 (347)
T PRK12288        195 GLEELEAALTGRI  207 (347)
T ss_pred             CHHHHHHHHhhCC
Confidence            9999999998654

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.84  E-value=1.9e-08  Score=77.83  Aligned_cols=87  Identities=20%  Similarity=0.179  Sum_probs=66.7

Q ss_pred             hhccCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCC
Q 028466           78 YIRDSSVAVIVYDVASRQ-SFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAG  156 (208)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  156 (208)
                      .+.++|.+++|+|+.++. ++..+..|+..+..   .++|+++|+||+|+.+..+  ...........+.+++.+|++++
T Consensus        75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~g  149 (287)
T cd01854          75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKTG  149 (287)
T ss_pred             EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCCC
Confidence            478999999999999887 77778888776653   3588999999999965421  12223334456789999999999


Q ss_pred             CCHHHHHHHHHHH
Q 028466          157 FNIKALFRKIAAA  169 (208)
Q Consensus       157 ~~v~~~~~~l~~~  169 (208)
                      .|+++++..|...
T Consensus       150 ~gi~~L~~~L~~k  162 (287)
T cd01854         150 EGLDELREYLKGK  162 (287)
T ss_pred             ccHHHHHhhhccc
Confidence            9999999988753

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=6.9e-09  Score=78.58  Aligned_cols=184  Identities=17%  Similarity=0.174  Sum_probs=117.9

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcC---CCCCCccceeeeeeeEEEE---EECCe------------------------
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYD---KFDNTYQATIGIDFLSKTM---YLEDR------------------------   56 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~---~~~~~------------------------   56 (208)
                      ..+++|.-+|+--.||||+++++.+-   .|..+.++.+++...+...   .+++.                        
T Consensus        36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~  115 (466)
T KOG0466|consen   36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP  115 (466)
T ss_pred             eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence            45799999999999999999988654   3344444555444333221   11110                        


Q ss_pred             --------EEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCC----hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCC
Q 028466           57 --------TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAS----RQSFLNTTKWVEEVRTERGSDVIIVLVGNKT  124 (208)
Q Consensus        57 --------~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~  124 (208)
                              ...+.|+|+|||+-..........-.|+.++++..+.    |++-+.+..  -++.++    +.++++-||+
T Consensus       116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~L----khiiilQNKi  189 (466)
T KOG0466|consen  116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMKL----KHIIILQNKI  189 (466)
T ss_pred             CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhhh----ceEEEEechh
Confidence                    1368999999999776655555555678888777663    233333221  112221    4578888999


Q ss_pred             CCcCccCc--CHHHHHHHHHHc---CCeEEEeecCCCCCHHHHHHHHHHHcCCCccCCcccccccccccccCCCCCCC
Q 028466          125 DLVDKRQV--SIEEGEAKAREL---NVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVDVNLKSSNTNTS  197 (208)
Q Consensus       125 D~~~~~~~--~~~~~~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (208)
                      |+..+.+.  ..+++..|....   +++++++||.-.-|++.+.++|.+.++.......... ++.-+..=+.|++-+
T Consensus       190 Dli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~s~p-rlIVIRSFDVNkPG~  266 (466)
T KOG0466|consen  190 DLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFTSPP-RLIVIRSFDVNKPGS  266 (466)
T ss_pred             hhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccCCCC-cEEEEEeeccCCCCc
Confidence            99765332  234455555543   5799999999999999999999999976655544433 445555555555533

>PRK00098 GTPase RsgA; Reviewed

Probab=98.81  E-value=1.8e-08  Score=78.37  Aligned_cols=88  Identities=22%  Similarity=0.237  Sum_probs=65.1

Q ss_pred             hccCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCC
Q 028466           79 IRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGF  157 (208)
Q Consensus        79 ~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  157 (208)
                      +.++|.+++|+|+.+++.... +..|+..+..   .++|+++|+||+|+.+..+ ............+.+++.+|++++.
T Consensus        78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~  153 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGE  153 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            589999999999988765544 4666665543   3688999999999953322 1223344555668899999999999


Q ss_pred             CHHHHHHHHHHHc
Q 028466          158 NIKALFRKIAAAL  170 (208)
Q Consensus       158 ~v~~~~~~l~~~~  170 (208)
                      |++++++.|...+
T Consensus       154 gi~~L~~~l~gk~  166 (298)
T PRK00098        154 GLDELKPLLAGKV  166 (298)
T ss_pred             cHHHHHhhccCce
Confidence            9999999886543

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.81  E-value=1.2e-08  Score=70.75  Aligned_cols=53  Identities=23%  Similarity=0.295  Sum_probs=37.7

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (208)
                      +++++|.+|+|||||+|++.+..... ...+..+  .....+.+++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKT--KHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcc--cceEEEEeCC---CEEEEECCCc
Confidence            89999999999999999999877642 2222223  3333444444   4789999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.79  E-value=2.2e-08  Score=77.84  Aligned_cols=164  Identities=18%  Similarity=0.257  Sum_probs=101.1

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccc--------------eee---------eeeeEEEEEEC----------
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA--------------TIG---------IDFLSKTMYLE----------   54 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~--------------~~~---------~~~~~~~~~~~----------   54 (208)
                      -+++++++|.-.+|||||+-.|..+.......+              ..+         .+.....+++.          
T Consensus       166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e  245 (591)
T KOG1143|consen  166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE  245 (591)
T ss_pred             eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence            378999999999999999998886654322111              111         11111111111          


Q ss_pred             CeEEEEEEEecCCchhhccchhhhhc--cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc--
Q 028466           55 DRTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR--  130 (208)
Q Consensus        55 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--  130 (208)
                      ...--++++|.+|+.+|.......+.  ..|..++|+++...-.+. .++.+-.+..   .++|++++++|+|+....  
T Consensus       246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~A---L~iPfFvlvtK~Dl~~~~~~  321 (591)
T KOG1143|consen  246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAA---LNIPFFVLVTKMDLVDRQGL  321 (591)
T ss_pred             hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHH---hCCCeEEEEEeeccccchhH
Confidence            11124789999999999887655444  358888999887532221 2333333332   369999999999996431  


Q ss_pred             ----------------------CcCHHHHHHHHHHc---C-CeEEEeecCCCCCHHHHHHHHHHHcCCCcc
Q 028466          131 ----------------------QVSIEEGEAKAREL---N-VMFIETSAKAGFNIKALFRKIAAALPGMET  175 (208)
Q Consensus       131 ----------------------~~~~~~~~~~~~~~---~-~~~~~~S~~~~~~v~~~~~~l~~~~~~~~~  175 (208)
                                            ....+++...+.+.   + .+++.+|+.+|+|+.-+...|...-+....
T Consensus       322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn~Lsp~~~~  392 (591)
T KOG1143|consen  322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLNCLSPAGTA  392 (591)
T ss_pred             HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHhhcCCcCCh
Confidence                                  11123333333332   2 489999999999998877777665544433

>cd01858 NGP_1 NGP-1

Probab=98.76  E-value=2.7e-08  Score=70.22  Aligned_cols=56  Identities=25%  Similarity=0.230  Sum_probs=37.8

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (208)
                      +.++|+++|.+|+|||||+|+|.+.... ....+..+..  ...+..+.   .+.++||||.
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~liDtPGi  157 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITLMK---RIYLIDCPGV  157 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEcCC---CEEEEECcCC
Confidence            4678999999999999999999976553 2223333332  22233322   3789999994

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01858 NGP_1 NGP-1

Probab=98.75  E-value=2.9e-08  Score=70.04  Aligned_cols=90  Identities=17%  Similarity=0.185  Sum_probs=58.4

Q ss_pred             hhhccCCEEEEEEeCCChhh--HHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecC
Q 028466           77 SYIRDSSVAVIVYDVASRQS--FLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAK  154 (208)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  154 (208)
                      ..+.++|++++|.|+.++..  ...+..++   .. ...+.|+++|+||+|+.+..+. ......+...+....+.+|++
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l---~~-~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~   78 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYL---KK-EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASIN   78 (157)
T ss_pred             HhhhhCCEEEEEEECCCCccccCHHHHHHH---Hh-ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecc
Confidence            45789999999999997632  22233322   22 2335899999999999643221 112222222222335789999


Q ss_pred             CCCCHHHHHHHHHHHcC
Q 028466          155 AGFNIKALFRKIAAALP  171 (208)
Q Consensus       155 ~~~~v~~~~~~l~~~~~  171 (208)
                      .+.|++++++.|.+...
T Consensus        79 ~~~~~~~L~~~l~~~~~   95 (157)
T cd01858          79 NPFGKGSLIQLLRQFSK   95 (157)
T ss_pred             ccccHHHHHHHHHHHHh
Confidence            99999999999987653

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.75  E-value=1.5e-08  Score=75.82  Aligned_cols=157  Identities=17%  Similarity=0.128  Sum_probs=90.3

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccc-eeeeeeeEEEEEECCeEEEEEEEecCC----------chhhccc
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-TIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSL   74 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~   74 (208)
                      +.++.++++.|.+++|||+|+|-++..+....... ..+.+.....+...   -.+.++|.||          ..++..+
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHh
Confidence            45679999999999999999999886655322222 22222222222222   3688999999          2245556


Q ss_pred             hhhhhccCC---EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC----cCHHHHHH----HHHH
Q 028466           75 IPSYIRDSS---VAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ----VSIEEGEA----KARE  143 (208)
Q Consensus        75 ~~~~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----~~~~~~~~----~~~~  143 (208)
                      ...|+.+-+   -++++.|++-+  +....-....+...  .++|+.+|.||+|......    .....+..    +.+.
T Consensus       210 t~~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge--~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~  285 (320)
T KOG2486|consen  210 TKSYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE--NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG  285 (320)
T ss_pred             HHHHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh--cCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence            666665543   33445555522  22222222222222  3699999999999753211    11111122    1111


Q ss_pred             ---cCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466          144 ---LNVMFIETSAKAGFNIKALFRKIAAA  169 (208)
Q Consensus       144 ---~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (208)
                         ...+.+.+|+.++.|.++++-.|.+.
T Consensus       286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             ceeccCCceeeecccccCceeeeeehhhh
Confidence               12456779999999999887666543

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.74  E-value=3.1e-08  Score=70.84  Aligned_cols=55  Identities=18%  Similarity=0.289  Sum_probs=39.2

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (208)
                      .++++++|.+|+|||||+|+|.+.... ....++.|...  ..+.++.   .+.++||||.
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~--~~~~~~~---~~~l~DtPGi  172 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSM--QEVHLDK---KVKLLDSPGI  172 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcce--EEEEeCC---CEEEEECcCC
Confidence            489999999999999999999987653 33344444433  3333332   5889999983

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.73  E-value=6.8e-08  Score=77.08  Aligned_cols=95  Identities=31%  Similarity=0.402  Sum_probs=68.6

Q ss_pred             chhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHH----HHHHH
Q 028466           68 QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGE----AKARE  143 (208)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~----~~~~~  143 (208)
                      .+.|..+...+.+.++++++|+|+.+..     ..|...+.... .+.|+++|+||+|+.+. ......+.    +++.+
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence            4578888888889999999999997642     22333333332 25789999999999653 22233333    34556


Q ss_pred             cCC---eEEEeecCCCCCHHHHHHHHHHH
Q 028466          144 LNV---MFIETSAKAGFNIKALFRKIAAA  169 (208)
Q Consensus       144 ~~~---~~~~~S~~~~~~v~~~~~~l~~~  169 (208)
                      .++   .++.+||+++.|++++++.|.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            665   48999999999999999999775

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=1.2e-08  Score=80.38  Aligned_cols=147  Identities=19%  Similarity=0.233  Sum_probs=101.2

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcC--------CCCC--------CccceeeeeeeEEEEEECCeEEEEEEEecCCchhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYD--------KFDN--------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~--------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (208)
                      +--+|.++..-.+||||.-+++++-        .+..        ..++..++++.+..++++.++++++++||||+-+|
T Consensus        36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf  115 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF  115 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence            4457889999999999999998621        1111        11234567788888888888899999999999999


Q ss_pred             ccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCe--EE
Q 028466           72 RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVM--FI  149 (208)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~--~~  149 (208)
                      +-.+.+.++.-|+++.|||++-.-..+.+.-|    ++..+.+.|-+.++||+|.....-  ...+...-..+++.  ..
T Consensus       116 ~leverclrvldgavav~dasagve~qtltvw----rqadk~~ip~~~finkmdk~~anf--e~avdsi~ekl~ak~l~l  189 (753)
T KOG0464|consen  116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVW----RQADKFKIPAHCFINKMDKLAANF--ENAVDSIEEKLGAKALKL  189 (753)
T ss_pred             EEEHHHHHHHhcCeEEEEeccCCcccceeeee----hhccccCCchhhhhhhhhhhhhhh--hhHHHHHHHHhCCceEEE
Confidence            99999999999999999999854323333444    444456789888899999754321  22233333345543  33


Q ss_pred             EeecCCCCCHH
Q 028466          150 ETSAKAGFNIK  160 (208)
Q Consensus       150 ~~S~~~~~~v~  160 (208)
                      .+..-+..++.
T Consensus       190 ~lpi~eak~fn  200 (753)
T KOG0464|consen  190 QLPIGEAKGFN  200 (753)
T ss_pred             Eeccccccccc
Confidence            44444555553

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=4.8e-07  Score=75.34  Aligned_cols=93  Identities=25%  Similarity=0.303  Sum_probs=60.0

Q ss_pred             EEEEEecCCch---hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHH
Q 028466           59 RLQLWDTAGQE---RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIE  135 (208)
Q Consensus        59 ~~~i~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~  135 (208)
                      .+.++|.||.+   ....-...+..++|++|+|.++.+..... ..+++......   ++.|+++.||.|.....+...+
T Consensus       207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~s-ek~Ff~~vs~~---KpniFIlnnkwDasase~ec~e  282 (749)
T KOG0448|consen  207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLS-EKQFFHKVSEE---KPNIFILNNKWDASASEPECKE  282 (749)
T ss_pred             cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHH-HHHHHHHhhcc---CCcEEEEechhhhhcccHHHHH
Confidence            46788999965   44455566788999999999997532222 34444444332   4557777799998765555555


Q ss_pred             HHHHHHHHcCC--------eEEEeecCC
Q 028466          136 EGEAKARELNV--------MFIETSAKA  155 (208)
Q Consensus       136 ~~~~~~~~~~~--------~~~~~S~~~  155 (208)
                      .+....+++.+        .++.+|++.
T Consensus       283 ~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  283 DVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             HHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence            55555555532        477888654

>TIGR00092 GTP-binding protein YchF

Probab=98.67  E-value=1.2e-07  Score=75.07  Aligned_cols=83  Identities=14%  Similarity=0.077  Sum_probs=59.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCC-CCCccceeeeeeeEEEEEECCeE---------------EEEEEEecCCchh---
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQER---   70 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~---   70 (208)
                      +++.|+|.|++|||||++.|+.... .....+..|++.....+...+..               ..+.+.|.||.-.   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999998876 44434555555555444443321               2578999999532   


Q ss_pred             ----hccchhhhhccCCEEEEEEeCC
Q 028466           71 ----FRSLIPSYIRDSSVAVIVYDVA   92 (208)
Q Consensus        71 ----~~~~~~~~~~~~d~~i~v~d~~   92 (208)
                          ........++++|++++|+++.
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                3334555688999999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.66  E-value=6.3e-08  Score=79.48  Aligned_cols=119  Identities=23%  Similarity=0.298  Sum_probs=80.7

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcC-----CCCC-----------CccceeeeeeeEEEEEECCeEEEEEEEecCCchhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYD-----KFDN-----------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~-----~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (208)
                      +.-+|.+.-+-.+||||+-++.+.-     +..+           ...+..++++.+....+....+.++++|||||-+|
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF  117 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF  117 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence            3456788889999999999987621     0000           11112234444444434444688999999999999


Q ss_pred             ccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466           72 RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR  130 (208)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~  130 (208)
                      .-.+.+.++.-|+.|+|+++...-.-+...-|    ++....++|.+.++||+|.....
T Consensus       118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~----rQ~~ry~vP~i~FiNKmDRmGa~  172 (721)
T KOG0465|consen  118 TFEVERALRVLDGAVLVLDAVAGVESQTETVW----RQMKRYNVPRICFINKMDRMGAS  172 (721)
T ss_pred             EEEehhhhhhccCeEEEEEcccceehhhHHHH----HHHHhcCCCeEEEEehhhhcCCC
Confidence            99999999999999999998743211222223    22223469999999999987654

>cd01856 YlqF YlqF

Probab=98.66  E-value=8.6e-08  Score=68.62  Aligned_cols=56  Identities=20%  Similarity=0.278  Sum_probs=39.0

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (208)
                      ..++++++|.+|+|||||+|++.+..+.. ...+..+..  ...+.++   ..+.++||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~--~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKG--IQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEee--eEEEEec---CCEEEEECCCC
Confidence            45799999999999999999999877632 222333333  3333333   35789999995

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01856 YlqF YlqF

Probab=98.65  E-value=8.6e-08  Score=68.61  Aligned_cols=94  Identities=18%  Similarity=0.129  Sum_probs=62.4

Q ss_pred             hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEE
Q 028466           70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFI  149 (208)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  149 (208)
                      .........+.++|++++|+|++++..... ..+...+     .+.|+++|+||+|+.+...  .....+.....+..++
T Consensus         8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi   79 (171)
T cd01856           8 KALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVL   79 (171)
T ss_pred             HHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEE
Confidence            344455677899999999999986543221 1111211     2478899999999953321  1111122233345789


Q ss_pred             EeecCCCCCHHHHHHHHHHHcC
Q 028466          150 ETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       150 ~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      .+|++++.|++++.+.|...++
T Consensus        80 ~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          80 FVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             EEECCCcccHHHHHHHHHHHHH
Confidence            9999999999999999998763

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.63  E-value=9e-08  Score=73.59  Aligned_cols=86  Identities=20%  Similarity=0.182  Sum_probs=65.6

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCe---------------EEEEEEEecCCch---
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQE---   69 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~---   69 (208)
                      ..+++.|||.++||||||+|.|+.........|..|++.....+.+...               ...++++|++|.-   
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            4579999999999999999999988887777788888777766655322               2368999999933   


Q ss_pred             ----hhccchhhhhccCCEEEEEEeCCC
Q 028466           70 ----RFRSLIPSYIRDSSVAVIVYDVAS   93 (208)
Q Consensus        70 ----~~~~~~~~~~~~~d~~i~v~d~~~   93 (208)
                          ........-++.+|+++-|+++..
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEecC
Confidence                233334455788999999988763

>cd01855 YqeH YqeH

Probab=98.62  E-value=6.2e-08  Score=70.56  Aligned_cols=55  Identities=18%  Similarity=0.248  Sum_probs=37.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCC---------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKF---------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (208)
                      +.+++++|.+|+|||||+|.|.+...         .....++.|  .....+.++.   .+.++||||.
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~---~~~~~DtPG~  190 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTT--LDLIKIPLGN---GKKLYDTPGI  190 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCee--eeeEEEecCC---CCEEEeCcCC
Confidence            46899999999999999999987543         222333333  3333444433   4789999993

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=2.3e-07  Score=77.94  Aligned_cols=117  Identities=21%  Similarity=0.202  Sum_probs=79.7

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhcCCC------------CC--CccceeeeeeeEEEEEECCeEEEEEEEecCCch
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKF------------DN--TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   69 (208)
                      +.....-+++++.+-..|||||...|+..+-            -+  +.+.+.+++.....+..-.+.+.++++|+|||-
T Consensus         4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv   83 (887)
T KOG0467|consen    4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV   83 (887)
T ss_pred             CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence            3445667899999999999999999874321            11  122334444444444444455789999999999


Q ss_pred             hhccchhhhhccCCEEEEEEeCCChhhHHhH-HH-HHHHHHhhcCCCCeEEEEEeCCCC
Q 028466           70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TK-WVEEVRTERGSDVIIVLVGNKTDL  126 (208)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~-~~~~~~~~~~~~~~iivv~nK~D~  126 (208)
                      +|.+.+....+-+|++++++|+..  ..... .. ..+.+.    .+...++|+||+|.
T Consensus        84 df~sevssas~l~d~alvlvdvve--gv~~qt~~vlrq~~~----~~~~~~lvinkidr  136 (887)
T KOG0467|consen   84 DFSSEVSSASRLSDGALVLVDVVE--GVCSQTYAVLRQAWI----EGLKPILVINKIDR  136 (887)
T ss_pred             chhhhhhhhhhhcCCcEEEEeecc--ccchhHHHHHHHHHH----ccCceEEEEehhhh
Confidence            999999999999999999999973  23221 11 111222    23446778899993

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.60  E-value=1.8e-07  Score=72.43  Aligned_cols=57  Identities=23%  Similarity=0.321  Sum_probs=41.4

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCC-CCCccceeeeeeeEEEEEECCeEEEEEEEecCCch
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   69 (208)
                      ..++++|+|.+|||||||+|+|.+... .....++.|...  ..+..+.   .+.++||||.-
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEeCC---cEEEEECCCcC
Confidence            468999999999999999999998765 333344544443  3344433   47899999964

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.59  E-value=1.6e-07  Score=72.38  Aligned_cols=56  Identities=25%  Similarity=0.360  Sum_probs=39.9

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (208)
                      +.++++++|.+|+|||||+|+|.+.... ....+..|..  ...+.++.   .+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKG--QQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecc--eEEEEeCC---CEEEEECCCc
Confidence            4689999999999999999999977643 2233443333  33344433   4789999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.57  E-value=2.1e-07  Score=64.48  Aligned_cols=78  Identities=19%  Similarity=0.197  Sum_probs=53.1

Q ss_pred             hhhhhccCCEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEee
Q 028466           75 IPSYIRDSSVAVIVYDVASRQSFL--NTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETS  152 (208)
Q Consensus        75 ~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  152 (208)
                      ....+..+|++++|+|+.++.+..  .+..++...    ..+.|+++|+||+|+.+..+  ..+..+.....+..++.+|
T Consensus         5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iS   78 (141)
T cd01857           5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFS   78 (141)
T ss_pred             HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEE
Confidence            345688999999999998765433  233333322    14689999999999964322  2234455556678899999


Q ss_pred             cCCCCC
Q 028466          153 AKAGFN  158 (208)
Q Consensus       153 ~~~~~~  158 (208)
                      +.++.+
T Consensus        79 a~~~~~   84 (141)
T cd01857          79 ALKENA   84 (141)
T ss_pred             ecCCCc
Confidence            998764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.57  E-value=3.9e-07  Score=64.16  Aligned_cols=84  Identities=19%  Similarity=0.090  Sum_probs=54.9

Q ss_pred             CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHH
Q 028466           83 SVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL  162 (208)
Q Consensus        83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~  162 (208)
                      |++++|+|+.++.+...  .++.. ......+.|+++|+||+|+.+..+. ......+....+..++.+|++++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            78999999988754442  22221 1112246899999999999543211 11122232233567899999999999999


Q ss_pred             HHHHHHHc
Q 028466          163 FRKIAAAL  170 (208)
Q Consensus       163 ~~~l~~~~  170 (208)
                      ++.|.+.+
T Consensus        77 ~~~i~~~~   84 (155)
T cd01849          77 ESAFTKQT   84 (155)
T ss_pred             HHHHHHHh
Confidence            99987654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01859 MJ1464 MJ1464

Probab=98.55  E-value=2.6e-07  Score=65.03  Aligned_cols=57  Identities=23%  Similarity=0.256  Sum_probs=38.0

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (208)
                      ...+++++|.+|+|||||+|++.+.... ...++.+.+.....+..+.   .+.+|||||.
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpGi  156 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPGV  156 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence            4578999999999999999999865532 2233333332222232332   5889999983

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.55  E-value=1.5e-06  Score=64.84  Aligned_cols=85  Identities=22%  Similarity=0.169  Sum_probs=52.0

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcC--CCCCCcc---ceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc------chh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQ---ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIP   76 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~   76 (208)
                      +-.-|.|+|++++|||+|+|+|++.  .+.....   -|.++-........ +....+.++||+|......      ...
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~   84 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARL   84 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHH
Confidence            3467889999999999999999988  5532211   12222222211111 2335799999999664322      122


Q ss_pred             hhhcc--CCEEEEEEeCCC
Q 028466           77 SYIRD--SSVAVIVYDVAS   93 (208)
Q Consensus        77 ~~~~~--~d~~i~v~d~~~   93 (208)
                      ..+..  +|++|+..+...
T Consensus        85 ~~l~~llss~~i~n~~~~~  103 (224)
T cd01851          85 FALATLLSSVLIYNSWETI  103 (224)
T ss_pred             HHHHHHHhCEEEEeccCcc
Confidence            23333  788888777653

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.53  E-value=2e-07  Score=73.21  Aligned_cols=58  Identities=26%  Similarity=0.363  Sum_probs=42.9

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCCchh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (208)
                      +.+++.|+|-+|||||||||+|.+..... ...|  +.+.....+..+.   .+.++||||.-.
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~---~i~LlDtPGii~  189 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDD---GIYLLDTPGIIP  189 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCC---CeEEecCCCcCC
Confidence            45889999999999999999999887732 3334  4445555555554   388999999543

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.53  E-value=2.4e-07  Score=65.25  Aligned_cols=57  Identities=19%  Similarity=0.233  Sum_probs=39.4

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCC-CCCccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (208)
                      ....+++++|.+|+|||||+|.+.+... .....+..+.....  ...+   ..+.++||||.
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~liDtPG~  155 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD---NKIKLLDTPGI  155 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec---CCEEEEECCCC
Confidence            3568899999999999999999997653 22333444433333  2232   25889999983

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.50  E-value=1.4e-07  Score=66.08  Aligned_cols=61  Identities=23%  Similarity=0.240  Sum_probs=33.9

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCC------CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDN------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   72 (208)
                      .-.++++|++|||||||+|.|.......      ......-++.....+.....   ..++||||...+.
T Consensus        35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~  101 (161)
T PF03193_consen   35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG  101 (161)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence            3468899999999999999998763211      11111112223334444332   4688999976543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.50  E-value=4e-07  Score=70.17  Aligned_cols=93  Identities=22%  Similarity=0.203  Sum_probs=62.7

Q ss_pred             cchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEee
Q 028466           73 SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETS  152 (208)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  152 (208)
                      ......+..+|++++|+|+.++.+...  ..+..+.    .+.|+++|+||+|+.+...  .....+.....+..++.+|
T Consensus        13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iS   84 (276)
T TIGR03596        13 REIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAV--TKQWLKYFEEKGIKALAIN   84 (276)
T ss_pred             HHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHH--HHHHHHHHHHcCCeEEEEE
Confidence            345667889999999999987643322  1111121    2578999999999954321  1111222233456789999


Q ss_pred             cCCCCCHHHHHHHHHHHcCCC
Q 028466          153 AKAGFNIKALFRKIAAALPGM  173 (208)
Q Consensus       153 ~~~~~~v~~~~~~l~~~~~~~  173 (208)
                      ++++.|++++.+.|.+.+.+.
T Consensus        85 a~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        85 AKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             CCCcccHHHHHHHHHHHHHHh
Confidence            999999999999999887554

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=5.4e-07  Score=70.87  Aligned_cols=155  Identities=19%  Similarity=0.216  Sum_probs=96.9

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcC-------------------------------CCCCCccceeeeeeeEEEEEECC
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYD-------------------------------KFDNTYQATIGIDFLSKTMYLED   55 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~   55 (208)
                      -.-++++++|.-..||||+-.++...                               .-.+++....++......+....
T Consensus        77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~  156 (501)
T KOG0459|consen   77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN  156 (501)
T ss_pred             CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence            44689999999999999988765411                               00112222233333333343333


Q ss_pred             eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCCh---hhHHhH--HHHHHHHHhhcCCCCeEEEEEeCCCCcC--
Q 028466           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASR---QSFLNT--TKWVEEVRTERGSDVIIVLVGNKTDLVD--  128 (208)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~--~~~~~~~~~~~~~~~~iivv~nK~D~~~--  128 (208)
                        .++++.|+||+..|.........++|+.++|+++...   ..|+.-  ......+....+ -...|+++||+|-..  
T Consensus       157 --~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g-v~~lVv~vNKMddPtvn  233 (501)
T KOG0459|consen  157 --KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG-VKHLIVLINKMDDPTVN  233 (501)
T ss_pred             --eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-cceEEEEEEeccCCccC
Confidence              5699999999999998888888999999999998532   233331  111122222222 244677789999642  


Q ss_pred             ccCcCHHHH----HHHHHHc------CCeEEEeecCCCCCHHHHHH
Q 028466          129 KRQVSIEEG----EAKAREL------NVMFIETSAKAGFNIKALFR  164 (208)
Q Consensus       129 ~~~~~~~~~----~~~~~~~------~~~~~~~S~~~~~~v~~~~~  164 (208)
                      ......++.    ..+.+..      ...|+++|..+|.++++..+
T Consensus       234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            223333333    3333322      25799999999999988765

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.46  E-value=1.9e-06  Score=67.45  Aligned_cols=163  Identities=15%  Similarity=0.179  Sum_probs=95.5

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCC------------------ccceeeeeeeEEEE----------------
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT------------------YQATIGIDFLSKTM----------------   51 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~------------------~~~~~~~~~~~~~~----------------   51 (208)
                      +.-++++++||.-.+|||||+-.|+.+.....                  +.+..+.++.-...                
T Consensus       130 DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~Ld  209 (641)
T KOG0463|consen  130 DFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLD  209 (641)
T ss_pred             cceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccc
Confidence            44589999999999999999998764433211                  11222222211111                


Q ss_pred             --E-ECCeEEEEEEEecCCchhhccchhhh--hccCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCeEEEEEeCCC
Q 028466           52 --Y-LEDRTVRLQLWDTAGQERFRSLIPSY--IRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTD  125 (208)
Q Consensus        52 --~-~~~~~~~~~i~D~~G~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D  125 (208)
                        . +.+..--++|+|.+|++.|...+-..  -.-.|...+++-++-  .+-. .++.+.....   .++|+++|++|+|
T Consensus       210 WvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNa--GIiGmTKEHLgLALa---L~VPVfvVVTKID  284 (641)
T KOG0463|consen  210 WVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANA--GIIGMTKEHLGLALA---LHVPVFVVVTKID  284 (641)
T ss_pred             ceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccc--cceeccHHhhhhhhh---hcCcEEEEEEeec
Confidence              0 01111247899999999987654322  234588888887763  2222 2333332222   3599999999999


Q ss_pred             CcCccCcCHHHHHHH---HHHc--------------------------CCeEEEeecCCCCCHHHHHHHHHHHcCCCc
Q 028466          126 LVDKRQVSIEEGEAK---AREL--------------------------NVMFIETSAKAGFNIKALFRKIAAALPGME  174 (208)
Q Consensus       126 ~~~~~~~~~~~~~~~---~~~~--------------------------~~~~~~~S~~~~~~v~~~~~~l~~~~~~~~  174 (208)
                      +-+.... .+..+.+   .+..                          -+++|.+|..+|.|+.-+...|.-.-.+.+
T Consensus       285 MCPANiL-qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLNlls~R~~  361 (641)
T KOG0463|consen  285 MCPANIL-QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLNLLSLRRQ  361 (641)
T ss_pred             cCcHHHH-HHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHhhcCcccc
Confidence            8654322 1111222   1111                          246899999999999877666654444433

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.41  E-value=4.1e-06  Score=65.67  Aligned_cols=94  Identities=17%  Similarity=0.103  Sum_probs=54.1

Q ss_pred             EEEEEEEecCCchhhccc----hhhh--------hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCC
Q 028466           57 TVRLQLWDTAGQERFRSL----IPSY--------IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT  124 (208)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~  124 (208)
                      .+.+.|+||||.......    ....        -...+..++|.|++..  ...+.+ ...+....   .+--+|.||.
T Consensus       196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~~---~~~giIlTKl  269 (318)
T PRK10416        196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEAV---GLTGIILTKL  269 (318)
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhhC---CCCEEEEECC
Confidence            367999999996432221    1111        1246788999999843  222222 12222111   2335667999


Q ss_pred             CCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHH
Q 028466          125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL  162 (208)
Q Consensus       125 D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~  162 (208)
                      |....    .-.+...+...++++..++  +|++++++
T Consensus       270 D~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl  301 (318)
T PRK10416        270 DGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDL  301 (318)
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence            95322    3345556677788888888  77777654

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.41  E-value=5.7e-06  Score=61.37  Aligned_cols=158  Identities=16%  Similarity=0.223  Sum_probs=96.7

Q ss_pred             ceeEEEEcCCCC--cHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEE--EEEEEecCCchhhccchhhhhccCCE
Q 028466            9 KYKLVFLGDQSV--GKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTV--RLQLWDTAGQERFRSLIPSYIRDSSV   84 (208)
Q Consensus         9 ~~~i~vvG~~~~--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (208)
                      +..++|+|.+|+  ||.+|+.+|....+..+......+.+...+  ++++-|  .+.+.=.+--+.+.-..........+
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwt--id~kyysadi~lcishicde~~lpn~~~a~pl~a   81 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWT--IDNKYYSADINLCISHICDEKFLPNAEIAEPLQA   81 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceE--ecceeeecceeEEeecccchhccCCcccccceee
Confidence            356899999999  999999999988886655554444443333  333222  22222111111121111222344578


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc-----------------------------------
Q 028466           85 AVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK-----------------------------------  129 (208)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~-----------------------------------  129 (208)
                      ++.|||++....+..+..|+....-.  .--.++.++||.|.++.                                   
T Consensus        82 ~vmvfdlse~s~l~alqdwl~htdin--sfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiseteg  159 (418)
T KOG4273|consen   82 FVMVFDLSEKSGLDALQDWLPHTDIN--SFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEG  159 (418)
T ss_pred             EEEEEeccchhhhHHHHhhccccccc--cchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccc
Confidence            99999999888888888886532111  11235667799997532                                   


Q ss_pred             -----cC----cCHHHHHHHHHHcCCeEEEeecCCC------------CCHHHHHHHHHHHc
Q 028466          130 -----RQ----VSIEEGEAKARELNVMFIETSAKAG------------FNIKALFRKIAAAL  170 (208)
Q Consensus       130 -----~~----~~~~~~~~~~~~~~~~~~~~S~~~~------------~~v~~~~~~l~~~~  170 (208)
                           .+    .....+.+|+.+.++.|++.++.+.            .||+.+|..|...+
T Consensus       160 ssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahm  221 (418)
T KOG4273|consen  160 SSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHM  221 (418)
T ss_pred             ccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhcc
Confidence                 00    1123456778888999999998432            47999999987543

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.39  E-value=2.4e-06  Score=60.30  Aligned_cols=63  Identities=14%  Similarity=0.035  Sum_probs=36.3

Q ss_pred             EEEEEEecCCchhhccchhh--------hhccCCEEEEEEeCCChhhH-HhHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 028466           58 VRLQLWDTAGQERFRSLIPS--------YIRDSSVAVIVYDVASRQSF-LNTTKWVEEVRTERGSDVIIVLVGNKTDL  126 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~iivv~nK~D~  126 (208)
                      ....++|++|..........        ..-..|.+++++|+.+.... .....+..++...     - ++|+||+|+
T Consensus        87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a-----d-~ivlnk~dl  158 (158)
T cd03112          87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA-----D-RILLNKTDL  158 (158)
T ss_pred             CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC-----C-EEEEecccC
Confidence            46789999997644333322        23357899999998643221 1222233333321     1 556799996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.39  E-value=2.4e-06  Score=77.84  Aligned_cols=113  Identities=22%  Similarity=0.268  Sum_probs=69.4

Q ss_pred             EEEEcCCCCcHHHHHHHhhcCCCCCCc----cc--eeeeeeeEEEEEECCeEEEEEEEecCC----ch----hhccchhh
Q 028466           12 LVFLGDQSVGKTSIITRFMYDKFDNTY----QA--TIGIDFLSKTMYLEDRTVRLQLWDTAG----QE----RFRSLIPS   77 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~----~~~~~~~~   77 (208)
                      .+|+|++|+||||++..- +..++-..    ..  +.+-+. .....+.+   +-.++||+|    ++    .....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence            589999999999999976 44443211    11  111011 11122222   456899999    21    11122333


Q ss_pred             hh---------ccCCEEEEEEeCCCh-----hh----HHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc
Q 028466           78 YI---------RDSSVAVIVYDVASR-----QS----FLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK  129 (208)
Q Consensus        78 ~~---------~~~d~~i~v~d~~~~-----~s----~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~  129 (208)
                      ++         +..+++|+++|+.+-     +.    -..+...+.++....+...|+.|++||+|+...
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG  258 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence            22         347999999998742     11    134566677777777889999999999998643

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.39  E-value=8.3e-07  Score=70.33  Aligned_cols=59  Identities=19%  Similarity=0.218  Sum_probs=35.8

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCC------ccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNT------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   72 (208)
                      .++|+|.+|||||||+|+|++......      ...+.-++.....+.+.+.   ..++||||...+.
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~  271 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG  271 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence            478999999999999999996644211      1111111222233334332   2489999987654

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.37  E-value=5e-07  Score=66.14  Aligned_cols=116  Identities=14%  Similarity=0.188  Sum_probs=74.2

Q ss_pred             EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChh----------hHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCC
Q 028466           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ----------SFLNTTKWVEEVRTER-GSDVIIVLVGNKTDL  126 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~  126 (208)
                      ..+.++|.+|+..-+..|...+.++-.++++..++..+          .+++....+..+..+. -.+.++|++.||.|+
T Consensus       199 iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDl  278 (359)
T KOG0085|consen  199 IIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL  278 (359)
T ss_pred             heeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhh
Confidence            34668899999888888888888888777776665322          2333333334443322 156789999999998


Q ss_pred             cCcc----------------CcCHHHHHHHHHHc----C-----C-eEEEeecCCCCCHHHHHHHHHHHcCCC
Q 028466          127 VDKR----------------QVSIEEGEAKAREL----N-----V-MFIETSAKAGFNIKALFRKIAAALPGM  173 (208)
Q Consensus       127 ~~~~----------------~~~~~~~~~~~~~~----~-----~-~~~~~S~~~~~~v~~~~~~l~~~~~~~  173 (208)
                      .++.                +.+...++.+....    +     + .-..+.|.+.+|+..+|..+.+.+...
T Consensus       279 LEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~  351 (359)
T KOG0085|consen  279 LEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  351 (359)
T ss_pred             hhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHh
Confidence            6431                22233344444433    1     1 225577889999999999988877543

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.37  E-value=1.9e-05  Score=63.11  Aligned_cols=157  Identities=19%  Similarity=0.289  Sum_probs=90.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcC-----------------CCCCCcc-c---eeeeeee---EEEEEE-CCeEEEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYD-----------------KFDNTYQ-A---TIGIDFL---SKTMYL-EDRTVRLQLW   63 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~-----------------~~~~~~~-~---~~~~~~~---~~~~~~-~~~~~~~~i~   63 (208)
                      .+=|.||||-.+||||||+||-..                 ..+++.. .   |.+..+.   ...+.+ ++..+++.++
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi   96 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI   96 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence            466899999999999999998522                 1121110 0   1111111   122233 4566789999


Q ss_pred             ecCCch-------------------hhccchh----------hhhc--cCCEEEEEEeCC--C--hhhHHhH-HHHHHHH
Q 028466           64 DTAGQE-------------------RFRSLIP----------SYIR--DSSVAVIVYDVA--S--RQSFLNT-TKWVEEV  107 (208)
Q Consensus        64 D~~G~~-------------------~~~~~~~----------~~~~--~~d~~i~v~d~~--~--~~s~~~~-~~~~~~~  107 (208)
                      |+.|.-                   +|....+          ..+.  ..-++++.-|-+  +  ++.+... ++.+..+
T Consensus        97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL  176 (492)
T PF09547_consen   97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL  176 (492)
T ss_pred             eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence            999811                   1111110          0011  123666666655  1  3344433 3344444


Q ss_pred             HhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCC--CCCHHHHHHHHHHHc
Q 028466          108 RTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKA--GFNIKALFRKIAAAL  170 (208)
Q Consensus       108 ~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~--~~~v~~~~~~l~~~~  170 (208)
                      ..   .++|+++++|-.+-  ..+.......++...|+++++++++..  .+.+..+++.++..+
T Consensus       177 k~---igKPFvillNs~~P--~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLyEF  236 (492)
T PF09547_consen  177 KE---IGKPFVILLNSTKP--YSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLYEF  236 (492)
T ss_pred             HH---hCCCEEEEEeCCCC--CCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHhcC
Confidence            43   46999999998885  334456677788888999999888854  455666665555444

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.35  E-value=5.5e-06  Score=63.62  Aligned_cols=93  Identities=18%  Similarity=0.129  Sum_probs=54.2

Q ss_pred             EEEEEEEecCCchhhccchhh-------hh-----ccCCEEEEEEeCCCh-hhHHhHHHHHHHHHhhcCCCCeEEEEEeC
Q 028466           57 TVRLQLWDTAGQERFRSLIPS-------YI-----RDSSVAVIVYDVASR-QSFLNTTKWVEEVRTERGSDVIIVLVGNK  123 (208)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~-------~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~iivv~nK  123 (208)
                      .+.+.|+||||..........       ..     ...|..++|.|++.. +.+...    ..+....   .+--+|.||
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~---~~~g~IlTK  226 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV---GLTGIILTK  226 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC---CCCEEEEEc
Confidence            367899999996543332211       11     137999999999743 223222    2222211   133566799


Q ss_pred             CCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHH
Q 028466          124 TDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL  162 (208)
Q Consensus       124 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~  162 (208)
                      .|....    .-.+.......++++..++  +|++++++
T Consensus       227 lDe~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl  259 (272)
T TIGR00064       227 LDGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDL  259 (272)
T ss_pred             cCCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhC
Confidence            997432    2344455556688887777  67776654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.35  E-value=2.8e-06  Score=63.35  Aligned_cols=116  Identities=17%  Similarity=0.175  Sum_probs=76.6

Q ss_pred             EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChh-------hHHhHHHHHHHHH----hhcCCCCeEEEEEeCCCC
Q 028466           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ-------SFLNTTKWVEEVR----TERGSDVIIVLVGNKTDL  126 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~----~~~~~~~~iivv~nK~D~  126 (208)
                      ++++.+|.+|+.+-+..|...+.++.++|||...+...       +-..+++-+..+.    ..-.....+|++.||.|+
T Consensus       202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl  281 (379)
T KOG0099|consen  202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL  281 (379)
T ss_pred             cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence            56889999999999999999999999999999887421       1112222222221    111234668999999998


Q ss_pred             cCc------------------------------cCcCHHHHHHHHHHcC-------------CeEEEeecCCCCCHHHHH
Q 028466          127 VDK------------------------------RQVSIEEGEAKARELN-------------VMFIETSAKAGFNIKALF  163 (208)
Q Consensus       127 ~~~------------------------------~~~~~~~~~~~~~~~~-------------~~~~~~S~~~~~~v~~~~  163 (208)
                      ..+                              ......+++.+.++.+             +-...+.|.+.+++..+|
T Consensus       282 laeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrVF  361 (379)
T KOG0099|consen  282 LAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF  361 (379)
T ss_pred             HHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHHH
Confidence            421                              1122334444444331             224667889999999999


Q ss_pred             HHHHHHcCCC
Q 028466          164 RKIAAALPGM  173 (208)
Q Consensus       164 ~~l~~~~~~~  173 (208)
                      +...+.+.+.
T Consensus       362 nDcrdiIqr~  371 (379)
T KOG0099|consen  362 NDCRDIIQRM  371 (379)
T ss_pred             HHHHHHHHHH
Confidence            9988887543

>PRK13796 GTPase YqeH; Provisional

Probab=98.34  E-value=4.1e-06  Score=67.05  Aligned_cols=93  Identities=30%  Similarity=0.419  Sum_probs=60.8

Q ss_pred             hhccchhhhhccCC-EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHH----HHHHHc
Q 028466           70 RFRSLIPSYIRDSS-VAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGE----AKAREL  144 (208)
Q Consensus        70 ~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~----~~~~~~  144 (208)
                      .|..... .+...| .+++|+|+.+..     ..|...+..... +.|+++|+||+|+.+. .....++.    ..+...
T Consensus        58 ~~~~~l~-~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         58 DFLKLLN-GIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             HHHHHHH-hhcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence            4544333 345555 889999997632     223333333322 5789999999999643 22233333    334555


Q ss_pred             CC---eEEEeecCCCCCHHHHHHHHHHHc
Q 028466          145 NV---MFIETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       145 ~~---~~~~~S~~~~~~v~~~~~~l~~~~  170 (208)
                      ++   .++.+||+++.|++++++.|.+..
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~  158 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKYR  158 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            65   689999999999999999998753

>PRK14974 cell division protein FtsY; Provisional

Probab=98.33  E-value=1.3e-06  Score=68.82  Aligned_cols=93  Identities=16%  Similarity=0.118  Sum_probs=53.3

Q ss_pred             EEEEEEecCCchhhccc----hhhh--hccCCEEEEEEeCCChhh-HHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466           58 VRLQLWDTAGQERFRSL----IPSY--IRDSSVAVIVYDVASRQS-FLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR  130 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~  130 (208)
                      +.+.++||+|.......    ....  ..+.|..++|.|+..... ...+.    .+....   .+--+|.||.|.... 
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~----~f~~~~---~~~giIlTKlD~~~~-  294 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAR----EFNEAV---GIDGVILTKVDADAK-  294 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHH----HHHhcC---CCCEEEEeeecCCCC-
Confidence            46899999996532221    1111  235789999999975322 22222    222111   123455699997432 


Q ss_pred             CcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466          131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALF  163 (208)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (208)
                         .-.+...+...+.++..++  +|++++++.
T Consensus       295 ---~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~  322 (336)
T PRK14974        295 ---GGAALSIAYVIGKPILFLG--VGQGYDDLI  322 (336)
T ss_pred             ---ccHHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence               2234445555688887777  788887654

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.32  E-value=1.7e-06  Score=67.06  Aligned_cols=101  Identities=20%  Similarity=0.202  Sum_probs=65.3

Q ss_pred             cCCch-hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH
Q 028466           65 TAGQE-RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE  143 (208)
Q Consensus        65 ~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~  143 (208)
                      .|||= .-.......+..+|++++|+|+.++.+...  .++....    .+.|+++|.||.|+.+...  .........+
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~   78 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEE   78 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence            45542 223345566889999999999986643222  1122222    1578999999999854211  1112222234


Q ss_pred             cCCeEEEeecCCCCCHHHHHHHHHHHcCCC
Q 028466          144 LNVMFIETSAKAGFNIKALFRKIAAALPGM  173 (208)
Q Consensus       144 ~~~~~~~~S~~~~~~v~~~~~~l~~~~~~~  173 (208)
                      .+..++.+|++++.|++++.+.|.+.+.+.
T Consensus        79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         79 QGIKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            466789999999999999999998877543

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.31  E-value=0.00011  Score=51.21  Aligned_cols=146  Identities=16%  Similarity=0.260  Sum_probs=77.5

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecC-Cch--------------h---
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA-GQE--------------R---   70 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G~~--------------~---   70 (208)
                      .+||.|.|+|||||||++.++...--...+ ...+  +...++.-+++..-|.|.|+. |..              .   
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~-kvgG--f~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V   81 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAEKLREKGY-KVGG--FITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGV   81 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHHhcCc-eeee--EEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEe
Confidence            489999999999999999987632111111 1111  222333344555556666655 211              1   


Q ss_pred             ----hc----cchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHH
Q 028466           71 ----FR----SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR  142 (208)
Q Consensus        71 ----~~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~  142 (208)
                          +.    ....+.++.+|++|  +|--.|-.+. ...+...+.......+|+|.++.+.+..+       . .+..+
T Consensus        82 ~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr~P-------~-v~~ik  150 (179)
T COG1618          82 NVEGLEEIAIPALRRALEEADVII--IDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSRHP-------L-VQRIK  150 (179)
T ss_pred             eHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccCCh-------H-HHHhh
Confidence                11    12233455677665  4554442222 23344444444456788888777665421       1 22233


Q ss_pred             HcCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          143 ELNVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       143 ~~~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      ..+..++.   .+.+|=+.+++.+...+.
T Consensus       151 ~~~~v~v~---lt~~NR~~i~~~Il~~L~  176 (179)
T COG1618         151 KLGGVYVF---LTPENRNRILNEILSVLK  176 (179)
T ss_pred             hcCCEEEE---EccchhhHHHHHHHHHhc
Confidence            33433332   566666688888877764

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.29  E-value=1.3e-06  Score=66.91  Aligned_cols=59  Identities=19%  Similarity=0.189  Sum_probs=36.8

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCC------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   72 (208)
                      ..+++|++|||||||+|+|.....      .+....+.=++.....+.+.+.   -.|+||||...+.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCccC
Confidence            678899999999999999985322      2222222222334444555432   2488999976653

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.27  E-value=1.9e-06  Score=65.21  Aligned_cols=59  Identities=20%  Similarity=0.177  Sum_probs=35.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCC------ccceeeeeeeEEEEEECCeEEEEEEEecCCchhh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (208)
                      .-.++++|.+|||||||+|+|.+......      ...+.-++.....+.+.+    ..++||||...+
T Consensus       120 ~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~  184 (245)
T TIGR00157       120 NRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEF  184 (245)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCcccc
Confidence            34688999999999999999986533211      111111122222333333    268999997554

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.25  E-value=1.6e-05  Score=62.41  Aligned_cols=85  Identities=13%  Similarity=0.126  Sum_probs=48.7

Q ss_pred             EEEEEEecCCchhhccchhhhhc--------cCCEEEEEEeCCChhhHH-hHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466           58 VRLQLWDTAGQERFRSLIPSYIR--------DSSVAVIVYDVASRQSFL-NTTKWVEEVRTERGSDVIIVLVGNKTDLVD  128 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~iivv~nK~D~~~  128 (208)
                      ....+++|.|......+...+..        ..+++|.|+|+.+..... .......++..   .+   +||+||+|+..
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~---AD---~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY---AD---RILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh---CC---EEEEeccccCC
Confidence            45678899997765555544322        248899999996432211 11111222321   11   66679999976


Q ss_pred             ccCcCHHHHHHHHHHcC--CeEEEee
Q 028466          129 KRQVSIEEGEAKARELN--VMFIETS  152 (208)
Q Consensus       129 ~~~~~~~~~~~~~~~~~--~~~~~~S  152 (208)
                      +    .+.++...+..+  ++++.++
T Consensus       165 ~----~~~~~~~l~~lnp~a~i~~~~  186 (318)
T PRK11537        165 E----AEKLRERLARINARAPVYTVV  186 (318)
T ss_pred             H----HHHHHHHHHHhCCCCEEEEec
Confidence            4    246666666664  5666544

>PRK12289 GTPase RsgA; Reviewed

Probab=98.25  E-value=2.2e-06  Score=68.03  Aligned_cols=58  Identities=24%  Similarity=0.146  Sum_probs=35.0

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCC-ccce-----eeeeeeEEEEEECCeEEEEEEEecCCchhh
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNT-YQAT-----IGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (208)
                      .++|+|++|||||||+|.|+....... ..+.     .-++.....+.+.++   ..++||||...+
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~~  237 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQP  237 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCcccc
Confidence            489999999999999999986543211 1111     001222233344332   268999997543

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.22  E-value=3.2e-05  Score=57.79  Aligned_cols=88  Identities=18%  Similarity=0.219  Sum_probs=58.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh-------hccchhhhhccC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRDS   82 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~   82 (208)
                      -++.++|.|.+||||++..+.+-..+.......+.........+.+  -++.+.|.||.-+       ....+....+.+
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            4899999999999999999986544322222222233333333444  4689999999432       233555667889


Q ss_pred             CEEEEEEeCCChhhHHh
Q 028466           83 SVAVIVYDVASRQSFLN   99 (208)
Q Consensus        83 d~~i~v~d~~~~~s~~~   99 (208)
                      ..+++|.|+..|-+...
T Consensus       138 nli~~vld~~kp~~hk~  154 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHKK  154 (358)
T ss_pred             cEEEEEeeccCcccHHH
Confidence            99999999987654443

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.22  E-value=2.5e-05  Score=61.28  Aligned_cols=89  Identities=30%  Similarity=0.287  Sum_probs=53.6

Q ss_pred             EEEEEEecCCchhhccchhhhhc--------cCCEEEEEEeCCChhhHHh--HHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466           58 VRLQLWDTAGQERFRSLIPSYIR--------DSSVAVIVYDVASRQSFLN--TTKWVEEVRTERGSDVIIVLVGNKTDLV  127 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~iivv~nK~D~~  127 (208)
                      +...++.+.|..........+..        ..|++|-|+|+.+-.....  ......++...     - +||+||.|+.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A-----D-~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA-----D-VIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC-----c-EEEEecccCC
Confidence            45678888887655443333322        3588999999975322111  12222333221     1 6667999998


Q ss_pred             CccCcCHHHHHHHHHHcC--CeEEEeecC
Q 028466          128 DKRQVSIEEGEAKARELN--VMFIETSAK  154 (208)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~--~~~~~~S~~  154 (208)
                      +...  ....+...+..+  ++++.++..
T Consensus       159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~~  185 (323)
T COG0523         159 DAEE--LEALEARLRKLNPRARIIETSYG  185 (323)
T ss_pred             CHHH--HHHHHHHHHHhCCCCeEEEcccc
Confidence            7653  556677777665  678877773

>PRK01889 GTPase RsgA; Reviewed

Probab=98.22  E-value=6.9e-06  Score=65.54  Aligned_cols=84  Identities=20%  Similarity=0.196  Sum_probs=56.1

Q ss_pred             hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466           79 IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN  158 (208)
Q Consensus        79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (208)
                      ..++|.+++|+++..+-....+..++..+..   .+.+.++|+||+|+.+..+.........  ..+.+++.+|++++.|
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~g  184 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEG  184 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCcc
Confidence            5789999999999633233345555444433   2466688899999975411111122222  3467899999999999


Q ss_pred             HHHHHHHHH
Q 028466          159 IKALFRKIA  167 (208)
Q Consensus       159 v~~~~~~l~  167 (208)
                      ++++..+|.
T Consensus       185 l~~L~~~L~  193 (356)
T PRK01889        185 LDVLAAWLS  193 (356)
T ss_pred             HHHHHHHhh
Confidence            999999885

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.21  E-value=1e-05  Score=58.27  Aligned_cols=81  Identities=26%  Similarity=0.208  Sum_probs=43.7

Q ss_pred             EEEEEEecCCchhhccch-----hhhhccCCEEEEEEeCCChhhHHhHHHHH-HHHHhhcCCCCeEEEEEeCCCCcCccC
Q 028466           58 VRLQLWDTAGQERFRSLI-----PSYIRDSSVAVIVYDVASRQSFLNTTKWV-EEVRTERGSDVIIVLVGNKTDLVDKRQ  131 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~-----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~iivv~nK~D~~~~~~  131 (208)
                      ....|+.+.|........     ....-..+.+|.|+|+.+......+...+ .++. ..    . ++|+||+|+.+.. 
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~-~A----D-vIvlnK~D~~~~~-  157 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA-FA----D-VIVLNKIDLVSDE-  157 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC-T-----S-EEEEE-GGGHHHH-
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcch-hc----C-EEEEeccccCChh-
Confidence            467788888865544441     11123468999999997643333333222 2232 22    1 6667999997654 


Q ss_pred             cCHHHHHHHHHHcC
Q 028466          132 VSIEEGEAKARELN  145 (208)
Q Consensus       132 ~~~~~~~~~~~~~~  145 (208)
                      ...++.++..++.+
T Consensus       158 ~~i~~~~~~ir~ln  171 (178)
T PF02492_consen  158 QKIERVREMIRELN  171 (178)
T ss_dssp             --HHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHC
Confidence            22356666666654

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.19  E-value=6e-06  Score=62.19  Aligned_cols=61  Identities=15%  Similarity=0.362  Sum_probs=45.9

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCc----cceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTY----QATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (208)
                      -.++|+-||..|.|||||+++|.+-++....    .+.+........+.-.+..++++|+||.|.
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf  105 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF  105 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence            3589999999999999999999988775432    334444444444555677789999999993

>PRK13695 putative NTPase; Provisional

Probab=98.18  E-value=6.5e-05  Score=53.84  Aligned_cols=21  Identities=29%  Similarity=0.526  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~   30 (208)
                      ++|+|+|++|+|||||+..+.
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~   21 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIA   21 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999999864

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.18  E-value=3.9e-06  Score=67.08  Aligned_cols=56  Identities=23%  Similarity=0.364  Sum_probs=37.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCC------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (208)
                      .++.++|.+|||||||+|+|+....      .....+..|.+.  ..+..+.   .+.++||||...
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~--~~~~~~~---~~~l~DtPG~~~  216 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDL--IEIPLDD---GHSLYDTPGIIN  216 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeE--EEEEeCC---CCEEEECCCCCC
Confidence            4899999999999999999987432      223334444333  3333422   356999999653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK13796 GTPase YqeH; Provisional

Probab=98.16  E-value=3.6e-06  Score=67.39  Aligned_cols=56  Identities=23%  Similarity=0.335  Sum_probs=36.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCC------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCch
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   69 (208)
                      ..++.++|.+|||||||+|+|+....      .....|+.|.+  ...+.+++.   ..++||||..
T Consensus       160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~--~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLD--KIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccce--eEEEEcCCC---cEEEECCCcc
Confidence            35799999999999999999985431      12233333333  334444332   4699999974

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.14  E-value=0.00013  Score=60.16  Aligned_cols=82  Identities=17%  Similarity=0.186  Sum_probs=55.8

Q ss_pred             EEEEEecCCch-------------hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCC
Q 028466           59 RLQLWDTAGQE-------------RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKT  124 (208)
Q Consensus        59 ~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~  124 (208)
                      ++.++|.||.-             ....+...|+.+..++|+|+.-   .+.+.-+.....+..... .+...|+|.+|.
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD---GSVDAERSnVTDLVsq~DP~GrRTIfVLTKV  489 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD---GSVDAERSIVTDLVSQMDPHGRRTIFVLTKV  489 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc---CCcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence            67899999933             2334567789999999998753   344444444444443332 456689999999


Q ss_pred             CCcCccCcCHHHHHHHHHH
Q 028466          125 DLVDKRQVSIEEGEAKARE  143 (208)
Q Consensus       125 D~~~~~~~~~~~~~~~~~~  143 (208)
                      |+.+..-.+..++++....
T Consensus       490 DlAEknlA~PdRI~kIleG  508 (980)
T KOG0447|consen  490 DLAEKNVASPSRIQQIIEG  508 (980)
T ss_pred             chhhhccCCHHHHHHHHhc
Confidence            9987766677777777654

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.11  E-value=4.7e-05  Score=60.77  Aligned_cols=141  Identities=11%  Similarity=0.089  Sum_probs=70.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCC---CCCccceeeeeee----------------EEEEEEC-----------CeEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFL----------------SKTMYLE-----------DRTV   58 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~----------------~~~~~~~-----------~~~~   58 (208)
                      .-.++|+|++|+||||++..|...-.   .......++.+.+                .......           -...
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~  216 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK  216 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence            45788999999999999998864311   0011111111111                0000000           0124


Q ss_pred             EEEEEecCCchhhccchh---hhh---ccCCEEEEEEeCCC-hhhHHhHHHHHHHHHhhcCC--CCeEEEEEeCCCCcCc
Q 028466           59 RLQLWDTAGQERFRSLIP---SYI---RDSSVAVIVYDVAS-RQSFLNTTKWVEEVRTERGS--DVIIVLVGNKTDLVDK  129 (208)
Q Consensus        59 ~~~i~D~~G~~~~~~~~~---~~~---~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~~  129 (208)
                      .+.++||+|.........   ..+   ...+-.++|++++. .+...++...+.........  ..+--+|.||.|... 
T Consensus       217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~-  295 (374)
T PRK14722        217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS-  295 (374)
T ss_pred             CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC-
Confidence            689999999664333221   112   22345688999874 34444333222222110000  012245569999643 


Q ss_pred             cCcCHHHHHHHHHHcCCeEEEeec
Q 028466          130 RQVSIEEGEAKARELNVMFIETSA  153 (208)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~S~  153 (208)
                         ..-.+...+...+.++..++.
T Consensus       296 ---~~G~~l~~~~~~~lPi~yvt~  316 (374)
T PRK14722        296 ---NLGGVLDTVIRYKLPVHYVST  316 (374)
T ss_pred             ---CccHHHHHHHHHCcCeEEEec
Confidence               234556666677776655553

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.08  E-value=8.9e-06  Score=63.07  Aligned_cols=61  Identities=23%  Similarity=0.187  Sum_probs=37.9

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCcc------ceeeeeeeEEEEEECCeEEEEEEEecCCchhhc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   72 (208)
                      .-.++++|++|+|||||+|.|++........      .+..++.....+...+.   ..++||||...+.
T Consensus       161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~  227 (287)
T cd01854         161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG  227 (287)
T ss_pred             cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence            3578999999999999999998764432111      11112222333444322   3589999986653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.06  E-value=1.9e-05  Score=64.01  Aligned_cols=22  Identities=32%  Similarity=0.530  Sum_probs=19.4

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~   30 (208)
                      ...|+++|++|+||||++..|.
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA  121 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLA  121 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4678999999999999999875

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.02  E-value=1.3e-05  Score=62.48  Aligned_cols=60  Identities=22%  Similarity=0.125  Sum_probs=36.2

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCcc-c-----eeeeeeeEEEEEECCeEEEEEEEecCCchh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-A-----TIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (208)
                      +...++++|++|+|||||+|.|++........ +     +.-++.....+...+.   ..++||||...
T Consensus       163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~  228 (298)
T PRK00098        163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS  228 (298)
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence            34568999999999999999998664422111 1     0011122233333332   36899999754

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.00  E-value=2.7e-05  Score=55.42  Aligned_cols=134  Identities=19%  Similarity=0.257  Sum_probs=63.4

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEec-CCc---------------------
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT-AGQ---------------------   68 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~---------------------   68 (208)
                      +|+|.|++|+|||||+.+++..-... ..+..+  +....+.-++...-+.+.|. .|.                     
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhcc-CCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            68999999999999999987432110 111212  11222223333344444444 221                     


Q ss_pred             -hhhcc----chhhhhccCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCeEEEEEeCC-CCcCccCcCHHHHHHHH
Q 028466           69 -ERFRS----LIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT-DLVDKRQVSIEEGEAKA  141 (208)
Q Consensus        69 -~~~~~----~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~-D~~~~~~~~~~~~~~~~  141 (208)
                       +.|..    .....+..+|  ++|+|--.+  ++. ...|...+......++|+|.++.+. +.        ..+.+..
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~--mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~  145 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGK--MELKSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIK  145 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---ST--TCCC-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccch--hhhcCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHH
Confidence             11111    1122224455  677775533  221 2334444444444678888887665 32        1234444


Q ss_pred             HHcCCeEEEeecCCCCCH
Q 028466          142 RELNVMFIETSAKAGFNI  159 (208)
Q Consensus       142 ~~~~~~~~~~S~~~~~~v  159 (208)
                      +..++.+++++..+++.+
T Consensus       146 ~~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  146 RRPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTTTSEEEE--TTTCCCH
T ss_pred             hCCCcEEEEeChhHHhhH
Confidence            555688888887777654

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.98  E-value=0.00022  Score=59.20  Aligned_cols=86  Identities=15%  Similarity=0.107  Sum_probs=47.3

Q ss_pred             EEEEEEEecCCchhhccchh------hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466           57 TVRLQLWDTAGQERFRSLIP------SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR  130 (208)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~  130 (208)
                      .+.+.|+||+|.........      .... ....++|++.+.  +...+...+..+...    .+.-+|+||.|...  
T Consensus       428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt~--  498 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDETG--  498 (559)
T ss_pred             cCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCcc--
Confidence            36789999999643322111      1111 234566677652  333444444444321    34567789999732  


Q ss_pred             CcCHHHHHHHHHHcCCeEEEeec
Q 028466          131 QVSIEEGEAKARELNVMFIETSA  153 (208)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~S~  153 (208)
                        ..-.+.......+.++..++.
T Consensus       499 --~lG~aLsv~~~~~LPI~yvt~  519 (559)
T PRK12727        499 --RFGSALSVVVDHQMPITWVTD  519 (559)
T ss_pred             --chhHHHHHHHHhCCCEEEEeC
Confidence              234666666677776655553

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.97  E-value=8.6e-06  Score=66.09  Aligned_cols=56  Identities=23%  Similarity=0.199  Sum_probs=42.3

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCch
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   69 (208)
                      .+.|.+||-|||||||+||.|.+.+.. .+..|+.|..+....  +..   .+-++|+||.-
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~--ls~---~v~LCDCPGLV  370 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIF--LSP---SVCLCDCPGLV  370 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEE--cCC---CceecCCCCcc
Confidence            489999999999999999999998764 344566655554433  332   57899999953

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.95  E-value=0.0001  Score=51.37  Aligned_cols=33  Identities=12%  Similarity=0.090  Sum_probs=25.0

Q ss_pred             EEEEEEEecCCchhhccchhhhhccCCEEEEEEeCC
Q 028466           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA   92 (208)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   92 (208)
                      .+.+.|+||+|....   ...++..+|-+|+|...+
T Consensus        91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe  123 (148)
T cd03114          91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPG  123 (148)
T ss_pred             CCCEEEEECCccChh---hhhHHHhCCEEEEEECCC
Confidence            367899999886432   234788999999998875

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.94  E-value=0.00016  Score=51.73  Aligned_cols=83  Identities=13%  Similarity=0.093  Sum_probs=44.2

Q ss_pred             EEEEEEEecCCchhhcc----chhhh--hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466           57 TVRLQLWDTAGQERFRS----LIPSY--IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR  130 (208)
Q Consensus        57 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~  130 (208)
                      .+.+.++|++|...+..    ....+  ....|.+++|+|+......   .++...+....+   ..-+|.||.|.....
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~~~~~~~~~~~---~~~viltk~D~~~~~  155 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VNQAKAFNEALG---ITGVILTKLDGDARG  155 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HHHHHHHHhhCC---CCEEEEECCcCCCCc
Confidence            34688899999743221    11111  2348999999998644322   233333332222   245666999974321


Q ss_pred             CcCHHHHHHHHHHcCCeEE
Q 028466          131 QVSIEEGEAKARELNVMFI  149 (208)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~  149 (208)
                          ..+...+...++++.
T Consensus       156 ----g~~~~~~~~~~~p~~  170 (173)
T cd03115         156 ----GAALSIRAVTGKPIK  170 (173)
T ss_pred             ----chhhhhHHHHCcCeE
Confidence                122235555555543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.93  E-value=0.0001  Score=53.83  Aligned_cols=84  Identities=15%  Similarity=0.094  Sum_probs=45.9

Q ss_pred             EEEEEEecCCchhhccc----hhhh--hccCCEEEEEEeCCCh-hhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466           58 VRLQLWDTAGQERFRSL----IPSY--IRDSSVAVIVYDVASR-QSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR  130 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~  130 (208)
                      +.+.++||+|.......    ...+  ....+-+++|.+++.. +....+..++    ....  . --+|.||.|.... 
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~----~~~~--~-~~lIlTKlDet~~-  155 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFY----EAFG--I-DGLILTKLDETAR-  155 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHH----HHSS--T-CEEEEESTTSSST-
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHh----hccc--C-ceEEEEeecCCCC-
Confidence            46899999995543321    1111  2256789999999843 2222222222    2211  1 1344599996322 


Q ss_pred             CcCHHHHHHHHHHcCCeEEEee
Q 028466          131 QVSIEEGEAKARELNVMFIETS  152 (208)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~S  152 (208)
                         .-.+...+...+.++-.++
T Consensus       156 ---~G~~l~~~~~~~~Pi~~it  174 (196)
T PF00448_consen  156 ---LGALLSLAYESGLPISYIT  174 (196)
T ss_dssp             ---THHHHHHHHHHTSEEEEEE
T ss_pred             ---cccceeHHHHhCCCeEEEE
Confidence               3456666777787765555

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.89  E-value=6.4e-05  Score=42.79  Aligned_cols=44  Identities=16%  Similarity=0.185  Sum_probs=30.6

Q ss_pred             cCCEEEEEEeCCC--hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 028466           81 DSSVAVIVYDVAS--RQSFLNTTKWVEEVRTERGSDVIIVLVGNKTD  125 (208)
Q Consensus        81 ~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D  125 (208)
                      -.++++|++|++.  +.+++.+...+..++... .+.|+++|.||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence            4689999999984  457788888888888765 3799999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.87  E-value=0.00012  Score=56.22  Aligned_cols=97  Identities=21%  Similarity=0.266  Sum_probs=67.2

Q ss_pred             chhhhhccCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEee
Q 028466           74 LIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETS  152 (208)
Q Consensus        74 ~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  152 (208)
                      +.+.-..+.|-.++|+.+.+|+--.. +..++- +....  ++..++++||+|+.+..+....+........++.++.+|
T Consensus        72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv-~ae~~--gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s  148 (301)
T COG1162          72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLV-LAEAG--GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVS  148 (301)
T ss_pred             eeCCcccccceEEEEEeccCCCCCHHHHHHHHH-HHHHc--CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEec
Confidence            33444566888888888888754443 444433 33333  344566679999976654443456667777899999999


Q ss_pred             cCCCCCHHHHHHHHHHHcCCC
Q 028466          153 AKAGFNIKALFRKIAAALPGM  173 (208)
Q Consensus       153 ~~~~~~v~~~~~~l~~~~~~~  173 (208)
                      ++++++++++.+.+...+.-+
T Consensus       149 ~~~~~~~~~l~~~l~~~~svl  169 (301)
T COG1162         149 AKNGDGLEELAELLAGKITVL  169 (301)
T ss_pred             CcCcccHHHHHHHhcCCeEEE
Confidence            999999999999988775433

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.84  E-value=4.7e-05  Score=61.98  Aligned_cols=114  Identities=19%  Similarity=0.273  Sum_probs=71.2

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcC------------CCCC----CccceeeeeeeEEEEE--------------ECCeEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYD------------KFDN----TYQATIGIDFLSKTMY--------------LEDRTV   58 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~------------~~~~----~~~~~~~~~~~~~~~~--------------~~~~~~   58 (208)
                      --++.++.+-..|||||-..|...            .|.+    +-++.+++.-....+.              .++..+
T Consensus        19 iRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~F   98 (842)
T KOG0469|consen   19 IRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGF   98 (842)
T ss_pred             cccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcce
Confidence            346788899999999999988632            1111    1122223222222111              123457


Q ss_pred             EEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 028466           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL  126 (208)
Q Consensus        59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~  126 (208)
                      -++++|.|||-+|.+.+...++-.|+.++|+|.-+.--.+ .+..+.+...   ..+.-+++.||+|.
T Consensus        99 LiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQ-TETVLrQA~~---ERIkPvlv~NK~DR  162 (842)
T KOG0469|consen   99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ-TETVLRQAIA---ERIKPVLVMNKMDR  162 (842)
T ss_pred             eEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEec-hHHHHHHHHH---hhccceEEeehhhH
Confidence            7899999999999999999999999999999987531111 2222222221   22334566799996

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.82  E-value=0.00013  Score=50.35  Aligned_cols=106  Identities=13%  Similarity=0.103  Sum_probs=61.0

Q ss_pred             EEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCC
Q 028466           14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAS   93 (208)
Q Consensus        14 vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~   93 (208)
                      .-|..|+|||++--.+...-.. ...+..-++...   ......+.+.++|+|+..  .......+..+|.++++.+.+ 
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-   77 (139)
T cd02038           5 TSGKGGVGKTNISANLALALAK-LGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-   77 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-
Confidence            3477899999987655321000 001111111110   001111679999999743  334456788999999999986 


Q ss_pred             hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466           94 RQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV  127 (208)
Q Consensus        94 ~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~  127 (208)
                      ..++......+..+.... ...++.+|+|+.+..
T Consensus        78 ~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~  110 (139)
T cd02038          78 PTSITDAYALIKKLAKQL-RVLNFRVVVNRAESP  110 (139)
T ss_pred             hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence            345555555555554433 345677888999853

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.78  E-value=0.00015  Score=57.93  Aligned_cols=158  Identities=16%  Similarity=0.133  Sum_probs=80.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCC---CCCccceeeeeeeEE-----------------EEEEC----------CeEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLSK-----------------TMYLE----------DRTV   58 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~----------~~~~   58 (208)
                      .-.|++|||.||||||-+-.|-..-.   ......-+++|.+..                 .+..+          -..+
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            45789999999999998887653322   111112222222111                 00000          0124


Q ss_pred             EEEEEecCCchhhccc----hhhhhcc--CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc
Q 028466           59 RLQLWDTAGQERFRSL----IPSYIRD--SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV  132 (208)
Q Consensus        59 ~~~i~D~~G~~~~~~~----~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~  132 (208)
                      .++++||.|...+...    ...++..  ..-+.+|++++.  ....+++.+..+....    .--+++||.|-..    
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~~~----i~~~I~TKlDET~----  352 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSLFP----IDGLIFTKLDETT----  352 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhccCC----cceeEEEcccccC----
Confidence            6899999997654442    2333333  345556788773  3455566555554321    1234459999632    


Q ss_pred             CHHHHHHHHHHcCCeEEEeec--CCCCCHHHH-HHHHHHHcCCCccC
Q 028466          133 SIEEGEAKARELNVMFIETSA--KAGFNIKAL-FRKIAAALPGMETL  176 (208)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~S~--~~~~~v~~~-~~~l~~~~~~~~~~  176 (208)
                      ..-.......+.+.++..++.  .=.+++... -++|.+.+.+....
T Consensus       353 s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~~  399 (407)
T COG1419         353 SLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTFAN  399 (407)
T ss_pred             chhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhccccc
Confidence            233445555555655433332  223333322 34555555444333

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.77  E-value=0.0004  Score=55.76  Aligned_cols=85  Identities=15%  Similarity=0.044  Sum_probs=46.3

Q ss_pred             EEEEEEecCCchhhccc----hhhhh--ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC
Q 028466           58 VRLQLWDTAGQERFRSL----IPSYI--RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ  131 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~  131 (208)
                      +.+.|+||+|.......    ....+  ...+.+++|.|++..  ...+...+..+...    .+--+|+||.|-..   
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~----~idglI~TKLDET~---  391 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI----HIDGIVFTKFDETA---  391 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC----CCCEEEEEcccCCC---
Confidence            57899999996532221    22222  235678889998622  22233333333321    12234559999643   


Q ss_pred             cCHHHHHHHHHHcCCeEEEee
Q 028466          132 VSIEEGEAKARELNVMFIETS  152 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~S  152 (208)
                       ..-.+...+...++++..++
T Consensus       392 -k~G~iLni~~~~~lPIsyit  411 (436)
T PRK11889        392 -SSGELLKIPAVSSAPIVLMT  411 (436)
T ss_pred             -CccHHHHHHHHHCcCEEEEe
Confidence             23355666666777665444

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.74  E-value=0.00017  Score=64.93  Aligned_cols=116  Identities=22%  Similarity=0.184  Sum_probs=65.5

Q ss_pred             EEEEcCCCCcHHHHHHHhhcCCCCCCcc-ceeeeeeeEEEEEECC-eEEEEEEEecCC----ch----hhccchhhh---
Q 028466           12 LVFLGDQSVGKTSIITRFMYDKFDNTYQ-ATIGIDFLSKTMYLED-RTVRLQLWDTAG----QE----RFRSLIPSY---   78 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~i~D~~G----~~----~~~~~~~~~---   78 (208)
                      -+|+|++|+||||++.. .+.+|+-... ...+..... +.+++- -.-.-.++||.|    ++    .-...|..+   
T Consensus       128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~g-T~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l  205 (1188)
T COG3523         128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPG-TRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL  205 (1188)
T ss_pred             eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCC-CcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence            47899999999999973 3333321100 000000000 112221 011456889988    21    111222222   


Q ss_pred             ------hccCCEEEEEEeCCCh-----hh----HHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc
Q 028466           79 ------IRDSSVAVIVYDVASR-----QS----FLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK  129 (208)
Q Consensus        79 ------~~~~d~~i~v~d~~~~-----~s----~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~  129 (208)
                            .+..+++|+..|+.+-     ..    ...+...+.++........|++|+.||.|+...
T Consensus       206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G  271 (1188)
T COG3523         206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG  271 (1188)
T ss_pred             HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence                  3467999999998742     11    122445566666666678999999999999764

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.73  E-value=0.00043  Score=56.27  Aligned_cols=135  Identities=14%  Similarity=0.115  Sum_probs=68.8

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCC---CCCccceeeeeeeE-----------E----EE-EEC-----------CeE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLS-----------K----TM-YLE-----------DRT   57 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~-----------~----~~-~~~-----------~~~   57 (208)
                      +.-.++++|+.|+||||++..|.+...   ........+.+.+.           .    .+ ...           -..
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~  269 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG  269 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence            345899999999999999997764311   00000000000000           0    00 000           012


Q ss_pred             EEEEEEecCCchhhcc----chhhhh--ccCCEEEEEEeCCC-hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466           58 VRLQLWDTAGQERFRS----LIPSYI--RDSSVAVIVYDVAS-RQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR  130 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~  130 (208)
                      ..+.++||+|......    ....+.  ...+-.++|.|++. .+.+.   +++..+..   . .+-=+|.||.|-..  
T Consensus       270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~---~~~~~f~~---~-~~~~~I~TKlDEt~--  340 (420)
T PRK14721        270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD---EVISAYQG---H-GIHGCIITKVDEAA--  340 (420)
T ss_pred             CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH---HHHHHhcC---C-CCCEEEEEeeeCCC--
Confidence            3578999999553222    111211  22456778899873 33333   33333321   1 12235569999643  


Q ss_pred             CcCHHHHHHHHHHcCCeEEEeec
Q 028466          131 QVSIEEGEAKARELNVMFIETSA  153 (208)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~S~  153 (208)
                        ..-.+...+...++++..++.
T Consensus       341 --~~G~~l~~~~~~~lPi~yvt~  361 (420)
T PRK14721        341 --SLGIALDAVIRRKLVLHYVTN  361 (420)
T ss_pred             --CccHHHHHHHHhCCCEEEEEC
Confidence              244556666777777665553

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.72  E-value=6.3e-05  Score=57.66  Aligned_cols=59  Identities=20%  Similarity=0.333  Sum_probs=38.0

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCC------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (208)
                      .++.+.|+|-||+|||||+|.+.....      .....+++++..... +.+... -.+.+.||||.
T Consensus       142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~r-p~vy~iDTPGi  206 (335)
T KOG2485|consen  142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHR-PPVYLIDTPGI  206 (335)
T ss_pred             CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccC-CceEEecCCCc
Confidence            479999999999999999998763322      122334444444332 222222 25889999994

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.72  E-value=0.00065  Score=54.01  Aligned_cols=98  Identities=19%  Similarity=0.240  Sum_probs=53.5

Q ss_pred             EEEEEEecCCchhhccchhhhh-------ccCCEEEEEEeCCChhh--H-------Hh-------------HH-HHHHHH
Q 028466           58 VRLQLWDTAGQERFRSLIPSYI-------RDSSVAVIVYDVASRQS--F-------LN-------------TT-KWVEEV  107 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~-------~~~d~~i~v~d~~~~~s--~-------~~-------------~~-~~~~~~  107 (208)
                      ....++++.|......+...+.       -..|++|.|+|+.+...  +       ..             +. .+..++
T Consensus        93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi  172 (341)
T TIGR02475        93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL  172 (341)
T ss_pred             CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence            4578889999776555544431       14588999999974211  0       00             01 112222


Q ss_pred             HhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-cC--CeEEEeecCCCCCHHHHHH
Q 028466          108 RTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-LN--VMFIETSAKAGFNIKALFR  164 (208)
Q Consensus       108 ~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-~~--~~~~~~S~~~~~~v~~~~~  164 (208)
                      ..     .- +|++||+|+..+.+  ...+++..+. +.  ++++++. ........+++
T Consensus       173 ~~-----AD-~IvlnK~Dl~~~~~--l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~  223 (341)
T TIGR02475       173 AC-----AD-LVILNKADLLDAAG--LARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG  223 (341)
T ss_pred             Hh-----CC-EEEEeccccCCHHH--HHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence            21     11 66679999976543  4455666665 33  3566554 33345555554

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.70  E-value=0.00061  Score=50.42  Aligned_cols=63  Identities=27%  Similarity=0.325  Sum_probs=40.2

Q ss_pred             EEEEEEecC-CchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 028466           58 VRLQLWDTA-GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL  126 (208)
Q Consensus        58 ~~~~i~D~~-G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~  126 (208)
                      +.+.++||- |.+.|.   +...+.+|.+|.|.|.+. +++...+.. ..+.+..+ =.++.+|+||.|-
T Consensus       134 ~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri-~~L~~elg-~k~i~~V~NKv~e  197 (255)
T COG3640         134 YEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERI-KELAEELG-IKRIFVVLNKVDE  197 (255)
T ss_pred             CcEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHH-HHHHHHhC-CceEEEEEeeccc
Confidence            345666663 333333   334678999999999984 455554443 33443332 3788999999995

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.70  E-value=9.5e-05  Score=60.41  Aligned_cols=86  Identities=14%  Similarity=0.041  Sum_probs=46.8

Q ss_pred             EEEEEEecCCchhhccch------hhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC
Q 028466           58 VRLQLWDTAGQERFRSLI------PSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ  131 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~  131 (208)
                      ..+.|+||+|........      .......|.+++|+|++...   ........+....   ...-+|.||.|....  
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a~--  247 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTAK--  247 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCCc--
Confidence            368999999965433221      11234678999999997532   2222222222111   123456699996321  


Q ss_pred             cCHHHHHHHHHHcCCeEEEeec
Q 028466          132 VSIEEGEAKARELNVMFIETSA  153 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~S~  153 (208)
                        .-.+.......+.++..++.
T Consensus       248 --~G~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        248 --GGGALSAVAETGAPIKFIGT  267 (437)
T ss_pred             --ccHHHHHHHHHCcCEEEEec
Confidence              23445555566666655544

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.69  E-value=0.00015  Score=52.62  Aligned_cols=113  Identities=15%  Similarity=0.196  Sum_probs=61.2

Q ss_pred             EEEEEecCCchhhcc---chhhh---hccC---CEEEEEEeCCC-hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466           59 RLQLWDTAGQERFRS---LIPSY---IRDS---SVAVIVYDVAS-RQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD  128 (208)
Q Consensus        59 ~~~i~D~~G~~~~~~---~~~~~---~~~~---d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~  128 (208)
                      .+.++|+|||-+...   ..+..   +++.   -.++++.|..= .++...+-..+..+.......+|-|=|.+|+|+..
T Consensus        99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk  178 (273)
T KOG1534|consen   99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK  178 (273)
T ss_pred             CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence            578999999765322   11111   2221   23445555421 12333333333333333334688888889999864


Q ss_pred             ccC--------------------cC---------HHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          129 KRQ--------------------VS---------IEEGEAKARELN-VMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       129 ~~~--------------------~~---------~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      ...                    ..         ...+..+..+++ +.|++....+.++++.++..|-..++
T Consensus       179 ~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ  251 (273)
T KOG1534|consen  179 DKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ  251 (273)
T ss_pred             hhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence            310                    00         111223333445 47899999999999988888766553

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.68  E-value=0.00054  Score=54.73  Aligned_cols=86  Identities=15%  Similarity=0.154  Sum_probs=46.6

Q ss_pred             EEEEEEecCCchhhccc----hhhhhc--cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC
Q 028466           58 VRLQLWDTAGQERFRSL----IPSYIR--DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ  131 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~  131 (208)
                      +.+.|+||+|.......    ...+..  ..+.+++|.++.  ....++...+..+..   . .+--+|.||.|-..   
T Consensus       286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~~---l-~i~glI~TKLDET~---  356 (407)
T PRK12726        286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLAE---I-PIDGFIITKMDETT---  356 (407)
T ss_pred             CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcCc---C-CCCEEEEEcccCCC---
Confidence            57899999997433221    122222  346777787764  223333333332221   1 12245569999632   


Q ss_pred             cCHHHHHHHHHHcCCeEEEeec
Q 028466          132 VSIEEGEAKARELNVMFIETSA  153 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~S~  153 (208)
                       ..-.+...+...++++..++.
T Consensus       357 -~~G~~Lsv~~~tglPIsylt~  377 (407)
T PRK12726        357 -RIGDLYTVMQETNLPVLYMTD  377 (407)
T ss_pred             -CccHHHHHHHHHCCCEEEEec
Confidence             244566666777877665554

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.65  E-value=0.0005  Score=44.71  Aligned_cols=82  Identities=15%  Similarity=0.149  Sum_probs=49.6

Q ss_pred             EEEEc-CCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466           12 LVFLG-DQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (208)
Q Consensus        12 i~vvG-~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (208)
                      |++.| ..|+||||+...+...-.. ...+..-++.       +.. +.+.++|+|+....  .....+..+|.++++.+
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d~-------d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLIDL-------DPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEeC-------CCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence            56777 4589999998765421110 1112221111       111 57899999986432  23366788999999998


Q ss_pred             CCChhhHHhHHHHHH
Q 028466           91 VASRQSFLNTTKWVE  105 (208)
Q Consensus        91 ~~~~~s~~~~~~~~~  105 (208)
                      .+ ..++..+..++.
T Consensus        71 ~~-~~s~~~~~~~~~   84 (104)
T cd02042          71 PS-PLDLDGLEKLLE   84 (104)
T ss_pred             CC-HHHHHHHHHHHH
Confidence            85 456666666554

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.62  E-value=0.001  Score=54.43  Aligned_cols=86  Identities=10%  Similarity=0.016  Sum_probs=46.0

Q ss_pred             EEEEEEecCCchhhcc----chhhh--hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC
Q 028466           58 VRLQLWDTAGQERFRS----LIPSY--IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ  131 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~  131 (208)
                      +.+.|+||+|......    .....  .-..+.+++|.|+...+   ........+....   ...-+|.||.|-...  
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~i~giIlTKlD~~~r--  255 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---GLTGVILTKLDGDAR--  255 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---CCCEEEEeCccCccc--
Confidence            5689999999543211    11111  22567889999987532   2222233333211   123455699995221  


Q ss_pred             cCHHHHHHHHHHcCCeEEEeec
Q 028466          132 VSIEEGEAKARELNVMFIETSA  153 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~S~  153 (208)
                        .-.+.......++++..+..
T Consensus       256 --gG~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        256 --GGAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             --ccHHHHHHHHHCcCEEEEeC
Confidence              22355566666777655554

>TIGR00959 ffh signal recognition particle protein

Probab=97.61  E-value=0.00099  Score=54.41  Aligned_cols=86  Identities=13%  Similarity=0.042  Sum_probs=47.5

Q ss_pred             EEEEEEecCCchhhccc----hhh--hhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC
Q 028466           58 VRLQLWDTAGQERFRSL----IPS--YIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ  131 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~  131 (208)
                      +.+.|+||+|.......    ...  ..-+.|.+++|+|+...+   ....+...+....   ...-+|.||.|-...  
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i~giIlTKlD~~~~--  254 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GLTGVVLTKLDGDAR--  254 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CCCEEEEeCccCccc--
Confidence            56899999995332221    111  123578899999987542   2233333333222   123455699995221  


Q ss_pred             cCHHHHHHHHHHcCCeEEEeec
Q 028466          132 VSIEEGEAKARELNVMFIETSA  153 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~S~  153 (208)
                        .-.+...+...++++..+..
T Consensus       255 --~G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       255 --GGAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             --ccHHHHHHHHHCcCEEEEeC
Confidence              22356666677777665554

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.59  E-value=5.6e-05  Score=59.72  Aligned_cols=57  Identities=23%  Similarity=0.360  Sum_probs=42.6

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (208)
                      +-+++.|+|-+++||||+||.|.....-. .....+++.....+.++.   .+.|.|.||.
T Consensus       251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~-vg~~pGvT~smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  251 TSIRVGIIGYPNVGKSSVINSLKRRKACN-VGNVPGVTRSMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             cceEeeeecCCCCChhHHHHHHHHhcccc-CCCCccchhhhhheeccC---CceeccCCce
Confidence            46899999999999999999998776532 133344445566666665   5889999994

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.58  E-value=0.00069  Score=55.40  Aligned_cols=86  Identities=13%  Similarity=0.074  Sum_probs=47.3

Q ss_pred             EEEEEEecCCchhhc----cchhhhhc---cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466           58 VRLQLWDTAGQERFR----SLIPSYIR---DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR  130 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~  130 (208)
                      +.+.|+||+|.....    .....++.   .-+-.++|++++.  ....+.+.+..+...   + +--+|.||.|.... 
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~--~~~~l~~~~~~f~~~---~-~~~vI~TKlDet~~-  372 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATT--KYEDLKDIYKHFSRL---P-LDGLIFTKLDETSS-  372 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCC--CHHHHHHHHHHhCCC---C-CCEEEEeccccccc-
Confidence            578999999965332    12222333   2346677888863  223333333333211   1 12456699997332 


Q ss_pred             CcCHHHHHHHHHHcCCeEEEeec
Q 028466          131 QVSIEEGEAKARELNVMFIETSA  153 (208)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~S~  153 (208)
                         .-.+...+...++++..++.
T Consensus       373 ---~G~i~~~~~~~~lPv~yit~  392 (424)
T PRK05703        373 ---LGSILSLLIESGLPISYLTN  392 (424)
T ss_pred             ---ccHHHHHHHHHCCCEEEEeC
Confidence               33566777777877665553

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.57  E-value=0.00085  Score=43.97  Aligned_cols=103  Identities=17%  Similarity=0.157  Sum_probs=58.9

Q ss_pred             EEEEc-CCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466           12 LVFLG-DQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (208)
Q Consensus        12 i~vvG-~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (208)
                      |+++| ..|+||||+.-.|-..-.......+.-+|....   . +  ..+.++|+|+....  .....+..+|.++++.+
T Consensus         2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~---~-~--~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~   73 (106)
T cd03111           2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ---F-G--DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQ   73 (106)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC---C-C--CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEec
Confidence            45554 457999998776542211110111111111111   0 0  16899999985433  34456788999999998


Q ss_pred             CCChhhHHhHHHHHHHHHhhcCC-CCeEEEEEeC
Q 028466           91 VASRQSFLNTTKWVEEVRTERGS-DVIIVLVGNK  123 (208)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~~~-~~~iivv~nK  123 (208)
                      .+ ..+......++..+...... ...+.+|+|+
T Consensus        74 ~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          74 QD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             CC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            76 35666677777766654433 3456676674

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.56  E-value=0.001  Score=42.26  Aligned_cols=76  Identities=20%  Similarity=0.202  Sum_probs=46.9

Q ss_pred             EEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc-hhhhhccCCEEEEEEe
Q 028466           12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-IPSYIRDSSVAVIVYD   90 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d   90 (208)
                      +++.|..|+||||+...+...-.. ......-.+             .+.++|+++....... .......+|.++++.+
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~-~g~~v~~~~-------------d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK-RGKRVLLID-------------DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEC-------------CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            678899999999999877533211 111111111             5889999976433321 1445678899999998


Q ss_pred             CCChhhHHhHHH
Q 028466           91 VASRQSFLNTTK  102 (208)
Q Consensus        91 ~~~~~s~~~~~~  102 (208)
                      ... .+......
T Consensus        68 ~~~-~~~~~~~~   78 (99)
T cd01983          68 PEA-LAVLGARR   78 (99)
T ss_pred             Cch-hhHHHHHH
Confidence            764 33443333

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.51  E-value=0.00073  Score=52.13  Aligned_cols=103  Identities=17%  Similarity=0.251  Sum_probs=64.0

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh----------------
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------------   70 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------------   70 (208)
                      .+-..++|+|++|.|||+++++|...+.... ....             ....|..+.+|..+.                
T Consensus        59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~~-------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~  124 (302)
T PF05621_consen   59 HRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DEDA-------------ERIPVVYVQMPPEPDERRFYSAILEALGAPY  124 (302)
T ss_pred             cCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCCC-------------ccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence            3446799999999999999999987654322 1111             113455666654221                


Q ss_pred             --------hccchhhhhccCCEEEEEEeCCC---hhhHHhHHHHHHHHHhhcC-CCCeEEEEEeC
Q 028466           71 --------FRSLIPSYIRDSSVAVIVYDVAS---RQSFLNTTKWVEEVRTERG-SDVIIVLVGNK  123 (208)
Q Consensus        71 --------~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK  123 (208)
                              ........++...+=++++|--.   ..+......+++.++...+ -.+|++.|++.
T Consensus       125 ~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~  189 (302)
T PF05621_consen  125 RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR  189 (302)
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence                    12223345667788888888543   1344556666666665544 56888888754

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.51  E-value=0.0019  Score=56.12  Aligned_cols=88  Identities=16%  Similarity=0.130  Sum_probs=46.4

Q ss_pred             EEEEEEecCCchhhcc----chhhh--hccCCEEEEEEeCCC-hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466           58 VRLQLWDTAGQERFRS----LIPSY--IRDSSVAVIVYDVAS-RQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR  130 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~  130 (208)
                      +.+.|+||+|......    .....  ....+-.++|.|++. .+.+.++.   ..+......+ +-=+|+||.|-... 
T Consensus       264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~---~~f~~~~~~~-i~glIlTKLDEt~~-  338 (767)
T PRK14723        264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV---HAYRHGAGED-VDGCIITKLDEATH-  338 (767)
T ss_pred             CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH---HHHhhcccCC-CCEEEEeccCCCCC-
Confidence            4689999999332211    11111  223466788999873 33344333   3332211111 22455699996432 


Q ss_pred             CcCHHHHHHHHHHcCCeEEEeec
Q 028466          131 QVSIEEGEAKARELNVMFIETSA  153 (208)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~S~  153 (208)
                         .-.+.......++++..++.
T Consensus       339 ---~G~iL~i~~~~~lPI~yit~  358 (767)
T PRK14723        339 ---LGPALDTVIRHRLPVHYVST  358 (767)
T ss_pred             ---ccHHHHHHHHHCCCeEEEec
Confidence               33556666677777665553

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.49  E-value=0.0011  Score=53.70  Aligned_cols=143  Identities=22%  Similarity=0.263  Sum_probs=70.9

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCC-CC----------CCcc-----------ceeeeeeeEEE-E-----EECCeEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDK-FD----------NTYQ-----------ATIGIDFLSKT-M-----YLEDRTVRL   60 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~-~~----------~~~~-----------~~~~~~~~~~~-~-----~~~~~~~~~   60 (208)
                      ..-++++|++||||||++..|.... ..          +.+.           ...+....... .     ......+.+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            4568899999999999999886321 00          0000           00011111000 0     001123578


Q ss_pred             EEEecCCchhhcc----chhhhhc-----cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC
Q 028466           61 QLWDTAGQERFRS----LIPSYIR-----DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ  131 (208)
Q Consensus        61 ~i~D~~G~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~  131 (208)
                      .++||+|......    .+..++.     ..+-.++|+|++..  ...+...+..+...    .+--+|.||.|-...  
T Consensus       303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f~~~----~~~glIlTKLDEt~~--  374 (432)
T PRK12724        303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAYESL----NYRRILLTKLDEADF--  374 (432)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHhcCC----CCCEEEEEcccCCCC--
Confidence            9999999643221    1122221     23467889998743  22333333322111    122455599996322  


Q ss_pred             cCHHHHHHHHHHcCCeEEEeec--CCCCCHHH
Q 028466          132 VSIEEGEAKARELNVMFIETSA--KAGFNIKA  161 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~S~--~~~~~v~~  161 (208)
                        .-.+...+...+.++..++.  .=.+++..
T Consensus       375 --~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~  404 (432)
T PRK12724        375 --LGSFLELADTYSKSFTYLSVGQEVPFDILN  404 (432)
T ss_pred             --ccHHHHHHHHHCCCEEEEecCCCCCCCHHH
Confidence              33456666667776655554  22344443

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.45  E-value=0.012  Score=41.74  Aligned_cols=142  Identities=11%  Similarity=0.085  Sum_probs=98.2

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEe-cCCchhhccchhhhhccC
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD-TAGQERFRSLIPSYIRDS   82 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D-~~G~~~~~~~~~~~~~~~   82 (208)
                      ++......|++||..+.++..|.+.+...+..    ..                .++..-- .|=..+.....    ...
T Consensus        10 lp~ln~atiLLVg~e~~~~~~LA~a~l~~~~~----~~----------------l~Vh~a~sLPLp~e~~~lR----prI   65 (176)
T PF11111_consen   10 LPELNTATILLVGTEEALLQQLAEAMLEEDKE----FK----------------LKVHLAKSLPLPSENNNLR----PRI   65 (176)
T ss_pred             CCCcceeEEEEecccHHHHHHHHHHHHhhccc----ee----------------EEEEEeccCCCcccccCCC----cee
Confidence            33456788999999999999999999853211    00                0111110 01011111111    246


Q ss_pred             CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHH
Q 028466           83 SVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL  162 (208)
Q Consensus        83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~  162 (208)
                      |.++|++|.....++...+.-+..+....-. -.+.++++.....+...+...++.+++..+..+++.+.-...++...+
T Consensus        66 DlIVFvinl~sk~SL~~ve~SL~~vd~~ffl-GKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~l  144 (176)
T PF11111_consen   66 DLIVFVINLHSKYSLQSVEASLSHVDPSFFL-GKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSL  144 (176)
T ss_pred             EEEEEEEecCCcccHHHHHHHHhhCChhhhc-cceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHH
Confidence            9999999999888888877766555433222 235666677777677888899999999999999999999999988888


Q ss_pred             HHHHHHHc
Q 028466          163 FRKIAAAL  170 (208)
Q Consensus       163 ~~~l~~~~  170 (208)
                      -.-|.+++
T Consensus       145 AqRLL~~l  152 (176)
T PF11111_consen  145 AQRLLRML  152 (176)
T ss_pred             HHHHHHHH
Confidence            88887776

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.44  E-value=0.0025  Score=48.92  Aligned_cols=86  Identities=14%  Similarity=0.028  Sum_probs=47.2

Q ss_pred             EEEEEEEecCCchhhccc----hhhhh--ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466           57 TVRLQLWDTAGQERFRSL----IPSYI--RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR  130 (208)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~  130 (208)
                      .+.+.++||+|.......    +..++  ...+-.++|.|++.  ....+..++..+..   . .+--+|.||.|.... 
T Consensus       154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~--~~~d~~~~~~~f~~---~-~~~~~I~TKlDet~~-  226 (270)
T PRK06731        154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM--KSKDMIEIITNFKD---I-HIDGIVFTKFDETAS-  226 (270)
T ss_pred             CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc--CHHHHHHHHHHhCC---C-CCCEEEEEeecCCCC-
Confidence            357899999996532221    11222  24567899999873  22233333333332   1 222455599997432 


Q ss_pred             CcCHHHHHHHHHHcCCeEEEee
Q 028466          131 QVSIEEGEAKARELNVMFIETS  152 (208)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~S  152 (208)
                         .-.+...+...+.++..++
T Consensus       227 ---~G~~l~~~~~~~~Pi~~it  245 (270)
T PRK06731        227 ---SGELLKIPAVSSAPIVLMT  245 (270)
T ss_pred             ---ccHHHHHHHHHCcCEEEEe
Confidence               3355566666677665554

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.42  E-value=0.0018  Score=46.54  Aligned_cols=26  Identities=15%  Similarity=0.190  Sum_probs=21.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      .=.++|+|+.|+|||||++.+.+...
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~   50 (177)
T cd03222          25 GEVIGIVGPNGTGKTTAVKILAGQLI   50 (177)
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCCC
Confidence            34688999999999999998886543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.39  E-value=0.00018  Score=42.01  Aligned_cols=21  Identities=14%  Similarity=0.325  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      ..+|.|+.|+|||||++.+..
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998763

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.38  E-value=0.0028  Score=52.47  Aligned_cols=23  Identities=22%  Similarity=0.361  Sum_probs=19.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .--++|+|+.|+||||.+..|..
T Consensus       256 g~Vi~LvGpnGvGKTTTiaKLA~  278 (484)
T PRK06995        256 GGVFALMGPTGVGKTTTTAKLAA  278 (484)
T ss_pred             CcEEEEECCCCccHHHHHHHHHH
Confidence            34689999999999999998763

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.38  E-value=0.00015  Score=48.51  Aligned_cols=22  Identities=14%  Similarity=0.332  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998754

...

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.37  E-value=0.0017  Score=44.36  Aligned_cols=25  Identities=20%  Similarity=0.355  Sum_probs=21.2

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .-.++|+|++|+|||+|++.+...-
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3468999999999999999987554

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.36  E-value=0.00033  Score=51.69  Aligned_cols=26  Identities=23%  Similarity=0.369  Sum_probs=21.7

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .+..-|+|+|++|+|||||++.|...
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            35666778899999999999999754

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.32  E-value=0.0028  Score=51.20  Aligned_cols=86  Identities=9%  Similarity=0.004  Sum_probs=46.3

Q ss_pred             EEEEEEEecCCchhhcc----chhhhhcc---CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc
Q 028466           57 TVRLQLWDTAGQERFRS----LIPSYIRD---SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK  129 (208)
Q Consensus        57 ~~~~~i~D~~G~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~  129 (208)
                      .+.+.++||+|......    ....++..   .+-.++|.|++..  ...+.+.+..+...    .+--+|.||.|-...
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~----~~~~~I~TKlDet~~  327 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF----SYKTVIFTKLDETTC  327 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeccCCCc
Confidence            35789999999643221    11222222   2257899999843  33334433333211    122455699996332


Q ss_pred             cCcCHHHHHHHHHHcCCeEEEee
Q 028466          130 RQVSIEEGEAKARELNVMFIETS  152 (208)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~S  152 (208)
                          .-.+...+...+.++..++
T Consensus       328 ----~G~~l~~~~~~~~Pi~yit  346 (388)
T PRK12723        328 ----VGNLISLIYEMRKEVSYVT  346 (388)
T ss_pred             ----chHHHHHHHHHCCCEEEEe
Confidence                3355566666677665444

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.31  E-value=0.00028  Score=50.35  Aligned_cols=28  Identities=14%  Similarity=0.172  Sum_probs=23.1

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      +.+...-+.|+|.+|+|||||++++...
T Consensus         2 ~~~~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          2 NKTMIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CCCCceEEEEECCCCChHHHHHHHHHHH
Confidence            3445567899999999999999999855

>PRK08118 topology modulation protein; Reviewed

Probab=97.30  E-value=0.0002  Score=50.95  Aligned_cols=22  Identities=18%  Similarity=0.483  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      +|+|+|++|+|||||...|...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988643

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.30  E-value=0.00012  Score=57.75  Aligned_cols=47  Identities=13%  Similarity=0.157  Sum_probs=29.8

Q ss_pred             eEEEEEEEecCCchhhccchhh------hhccCCEEEEEEeCCChhhHHhHHH
Q 028466           56 RTVRLQLWDTAGQERFRSLIPS------YIRDSSVAVIVYDVASRQSFLNTTK  102 (208)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~  102 (208)
                      .++.++|+||.|-..-....-.      -.-..|-+|+|.|++-....+.+..
T Consensus       182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~  234 (483)
T KOG0780|consen  182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQAR  234 (483)
T ss_pred             cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHH
Confidence            4578999999994432221111      1235799999999987655555443

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.30  E-value=0.00026  Score=52.85  Aligned_cols=24  Identities=17%  Similarity=0.228  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      -++|+|++|||||||++.+.+-..
T Consensus        31 fvsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            378999999999999998875543

>PRK07261 topology modulation protein; Provisional

Probab=97.29  E-value=0.00021  Score=51.07  Aligned_cols=22  Identities=18%  Similarity=0.454  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      +|+|+|++|+|||||.+.|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999988643

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.28  E-value=0.00027  Score=55.71  Aligned_cols=96  Identities=21%  Similarity=0.127  Sum_probs=65.1

Q ss_pred             EEecCCch-hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHH
Q 028466           62 LWDTAGQE-RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAK  140 (208)
Q Consensus        62 i~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~  140 (208)
                      +.+.||+. .+.......+..+|+++-|.|+-+|.+...-  .+..+.    .+.+.++|+||.|+.+... .....+.+
T Consensus        14 i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~--~l~~~v----~~k~~i~vlNK~DL~~~~~-~~~W~~~~   86 (322)
T COG1161          14 IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP--ELERIV----KEKPKLLVLNKADLAPKEV-TKKWKKYF   86 (322)
T ss_pred             ccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc--cHHHHH----ccCCcEEEEehhhcCCHHH-HHHHHHHH
Confidence            33446644 6677778889999999999999988544321  111122    1344588899999976433 45555666


Q ss_pred             HHHcCCeEEEeecCCCCCHHHHHH
Q 028466          141 ARELNVMFIETSAKAGFNIKALFR  164 (208)
Q Consensus       141 ~~~~~~~~~~~S~~~~~~v~~~~~  164 (208)
                      ..+.+...+.+++..+.+...+..
T Consensus        87 ~~~~~~~~~~v~~~~~~~~~~i~~  110 (322)
T COG1161          87 KKEEGIKPIFVSAKSRQGGKKIRK  110 (322)
T ss_pred             HhcCCCccEEEEeecccCccchHH
Confidence            666677778889998888776664

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.24  E-value=0.00038  Score=50.94  Aligned_cols=26  Identities=15%  Similarity=0.183  Sum_probs=21.4

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      .=.++|+|++|||||||++.+-+-+-
T Consensus        28 Gevv~iiGpSGSGKSTlLRclN~LE~   53 (240)
T COG1126          28 GEVVVIIGPSGSGKSTLLRCLNGLEE   53 (240)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCcC
Confidence            34688999999999999999865544

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.23  E-value=0.0012  Score=48.89  Aligned_cols=68  Identities=18%  Similarity=0.205  Sum_probs=36.5

Q ss_pred             EEEEEEecCCchhhcc------chhhhhccCCEEEEEEeCC------ChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 028466           58 VRLQLWDTAGQERFRS------LIPSYIRDSSVAVIVYDVA------SRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTD  125 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~------~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D  125 (208)
                      ..+.++|+|||-++-.      ...++++..|.-+.++.+.      +|..+-  -..+..+....-...|-+=|..|+|
T Consensus        97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~i--S~lL~sl~tMl~melphVNvlSK~D  174 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFI--SSLLVSLATMLHMELPHVNVLSKAD  174 (290)
T ss_pred             CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHH--HHHHHHHHHHHhhcccchhhhhHhH
Confidence            4688999999764322      1233345566666655554      343332  2222222222223466666779999


Q ss_pred             Cc
Q 028466          126 LV  127 (208)
Q Consensus       126 ~~  127 (208)
                      +.
T Consensus       175 l~  176 (290)
T KOG1533|consen  175 LL  176 (290)
T ss_pred             HH
Confidence            85

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.23  E-value=0.00027  Score=50.80  Aligned_cols=23  Identities=17%  Similarity=0.517  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .||+|+|+||+||||+...|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998765

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.21  E-value=0.00027  Score=52.45  Aligned_cols=23  Identities=13%  Similarity=0.213  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      -++|+|++|||||||+|-+-+-.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            47899999999999999775443

>TIGR00235 udk uridine kinase

Probab=97.21  E-value=0.00038  Score=51.34  Aligned_cols=27  Identities=15%  Similarity=0.162  Sum_probs=23.2

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      +.+..-|+|+|++|+|||||++.+.+.
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            466788999999999999999998753

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.21  E-value=0.00022  Score=50.50  Aligned_cols=22  Identities=32%  Similarity=0.546  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      ||+|+|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999755

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.20  E-value=0.00029  Score=48.58  Aligned_cols=20  Identities=20%  Similarity=0.506  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q 028466           12 LVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~   31 (208)
                      |+++|++|+|||||++.+..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999873

...

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.14  E-value=0.006  Score=43.77  Aligned_cols=85  Identities=21%  Similarity=0.190  Sum_probs=58.2

Q ss_pred             eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHH
Q 028466           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIE  135 (208)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~  135 (208)
                      ..+.+.|+|||+...  ......+..+|.++++...+. .+...+..++..+...   +.++.+|+|+.|....   ...
T Consensus        91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE  161 (179)
T ss_pred             cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence            346899999996532  234456788999999998873 4555566665555432   4667888999997432   345


Q ss_pred             HHHHHHHHcCCeEE
Q 028466          136 EGEAKARELNVMFI  149 (208)
Q Consensus       136 ~~~~~~~~~~~~~~  149 (208)
                      ++++++.+++++++
T Consensus       162 ~~~~~~~~~~~~vl  175 (179)
T cd03110         162 EIEDYCEEEGIPIL  175 (179)
T ss_pred             HHHHHHHHcCCCeE
Confidence            66777777787654

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.11  E-value=0.00045  Score=47.28  Aligned_cols=24  Identities=13%  Similarity=0.210  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      =.++|+|+.|+|||||++.+.+..
T Consensus        12 ~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   12 EIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEccCCCccccceeeecccc
Confidence            368999999999999999887664

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.10  E-value=0.0033  Score=46.09  Aligned_cols=21  Identities=14%  Similarity=0.338  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q 028466           12 LVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~   32 (208)
                      |+|+|++|+||||+++.+...
T Consensus         4 ilI~GptGSGKTTll~~ll~~   24 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDY   24 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999987654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.09  E-value=0.00057  Score=48.85  Aligned_cols=26  Identities=23%  Similarity=0.487  Sum_probs=22.4

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      +..-++|.||+|+|||||++.|+...
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc
Confidence            34568889999999999999998766

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.07  E-value=0.00058  Score=40.99  Aligned_cols=21  Identities=14%  Similarity=0.419  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q 028466           12 LVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~   32 (208)
                      |++.|++|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999988754

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.05  E-value=0.0017  Score=46.38  Aligned_cols=40  Identities=20%  Similarity=0.076  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHcCCeE--EEeecCCCCCHHHHHHHHHHHcCCC
Q 028466          134 IEEGEAKARELNVMF--IETSAKAGFNIKALFRKIAAALPGM  173 (208)
Q Consensus       134 ~~~~~~~~~~~~~~~--~~~S~~~~~~v~~~~~~l~~~~~~~  173 (208)
                      ..-++.++-+..+-+  -++||++.+-+.+++..|.+...+-
T Consensus       161 ~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEg  202 (256)
T COG4598         161 VAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEG  202 (256)
T ss_pred             HHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhC
Confidence            344455555545444  3689999999999999999887544

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.03  E-value=0.0071  Score=41.91  Aligned_cols=24  Identities=13%  Similarity=0.333  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      =.++|+|+.|+|||||++.+.+..
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          27 DRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCC
Confidence            357899999999999999987764

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK01889 GTPase RsgA; Reviewed

Probab=97.03  E-value=0.0008  Score=53.84  Aligned_cols=25  Identities=20%  Similarity=0.539  Sum_probs=21.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      -+++|+|.+|+|||||+|.+.+...
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~  220 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV  220 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc
Confidence            4789999999999999999986543

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.02  E-value=0.002  Score=46.15  Aligned_cols=44  Identities=32%  Similarity=0.295  Sum_probs=27.6

Q ss_pred             CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466           83 SVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD  128 (208)
Q Consensus        83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~  128 (208)
                      |++++|+|+.++.+-.. ..+...+. ....+.|+|+|+||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence            78999999987532211 12222211 2223589999999999964

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK14530 adenylate kinase; Provisional

Probab=97.02  E-value=0.00062  Score=50.54  Aligned_cols=21  Identities=19%  Similarity=0.420  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~   30 (208)
                      .+|+|+|++||||||+.+.|.
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La   24 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLA   24 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            489999999999999999885

>PRK08233 hypothetical protein; Provisional

Probab=97.01  E-value=0.00072  Score=48.58  Aligned_cols=25  Identities=16%  Similarity=0.179  Sum_probs=21.3

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      +..-|+|.|.+|+|||||.++|...
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhh
Confidence            3477889999999999999998743

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.99  E-value=0.00074  Score=53.18  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHhhcCCC
Q 028466           12 LVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      ++++|++|||||||++.+.+-.-
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe~   54 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLEE   54 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            78999999999999998876544

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.99  E-value=0.0063  Score=51.07  Aligned_cols=20  Identities=25%  Similarity=0.444  Sum_probs=16.8

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q 028466           12 LVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~   31 (208)
                      +++.||+|+||||.++.|..
T Consensus        48 LlLtGP~G~GKtttv~~La~   67 (519)
T PF03215_consen   48 LLLTGPSGCGKTTTVKVLAK   67 (519)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            45569999999999998763

>KOG2484 consensus GTPase [General function prediction only]

Probab=96.98  E-value=0.0035  Score=49.91  Aligned_cols=123  Identities=16%  Similarity=0.057  Sum_probs=74.3

Q ss_pred             hhccchhhhhccCCEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCe
Q 028466           70 RFRSLIPSYIRDSSVAVIVYDVASRQSFL--NTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVM  147 (208)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (208)
                      .|.......+..+|++|-|.|+-||.+-.  +++.+...   .. .+...|+|+||.|+++. +.....+..+.+++..-
T Consensus       135 aY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~---~~-gnKkLILVLNK~DLVPr-Ev~e~Wl~YLr~~~ptv  209 (435)
T KOG2484|consen  135 AYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQ---AH-GNKKLILVLNKIDLVPR-EVVEKWLVYLRREGPTV  209 (435)
T ss_pred             HHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHh---cc-CCceEEEEeehhccCCH-HHHHHHHHHHHhhCCcc
Confidence            45556666678899999999999985533  34444322   22 34778999999999763 33344555555554434


Q ss_pred             EEEeecCCCCC--------HHHHHHHHHHHcCCCccCCcccccccccccccCCCCCCC
Q 028466          148 FIETSAKAGFN--------IKALFRKIAAALPGMETLSSTKQEDLVDVNLKSSNTNTS  197 (208)
Q Consensus       148 ~~~~S~~~~~~--------v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (208)
                      .+..|.....+        ..--.+.+...+-.......-...-++++-+-+..+++|
T Consensus       210 ~fkast~~~~~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSS  267 (435)
T KOG2484|consen  210 AFKASTQMQNSNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSS  267 (435)
T ss_pred             eeecccccccccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhH
Confidence            44444433322        223445555666555555555555667777777777655

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.98  E-value=0.00066  Score=46.84  Aligned_cols=22  Identities=23%  Similarity=0.557  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .|.|+|+.|+|||||++.|+..
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998754

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.97  E-value=0.0033  Score=42.82  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      --|++.|+.|+|||||++.+...
T Consensus        23 ~~i~l~G~lGaGKTtl~~~l~~~   45 (133)
T TIGR00150        23 TVVLLKGDLGAGKTTLVQGLLQG   45 (133)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            45889999999999999988754

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.94  E-value=0.00074  Score=48.96  Aligned_cols=24  Identities=17%  Similarity=0.277  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .=|+|+|++|||||||+++|+...
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            458889999999999999998653

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.94  E-value=0.00077  Score=46.35  Aligned_cols=21  Identities=29%  Similarity=0.699  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q 028466           12 LVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~   32 (208)
                      |+|+|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999754

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.94  E-value=0.00078  Score=44.01  Aligned_cols=21  Identities=24%  Similarity=0.544  Sum_probs=18.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~   30 (208)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            458999999999999999875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=96.92  E-value=0.031  Score=39.83  Aligned_cols=84  Identities=12%  Similarity=-0.005  Sum_probs=50.6

Q ss_pred             EEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHH
Q 028466           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGE  138 (208)
Q Consensus        59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~  138 (208)
                      .+.|+|+|+....  .....+..+|.+|++.+.+. .++..+..++..+....  .....+|+|+.+.....  ......
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~~--~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDMVE--GGDMVE  136 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCcccccc--hhhHHH
Confidence            6899999975433  34455788999999998864 45555555555554321  23466788999864321  122233


Q ss_pred             HHHHHcCCeEE
Q 028466          139 AKARELNVMFI  149 (208)
Q Consensus       139 ~~~~~~~~~~~  149 (208)
                      .+...++.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            44444566544

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PRK06217 hypothetical protein; Validated

Probab=96.92  E-value=0.0008  Score=48.65  Aligned_cols=23  Identities=13%  Similarity=0.237  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .+|+|+|.+|+|||||..+|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998744

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.92  E-value=0.00084  Score=48.67  Aligned_cols=22  Identities=18%  Similarity=0.369  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .++|+|++|+|||||++.|.+.
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999654

>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]

Probab=96.90  E-value=0.0013  Score=50.51  Aligned_cols=37  Identities=16%  Similarity=0.117  Sum_probs=26.0

Q ss_pred             EEEEEEEecCCchhhccchhhhhc--------cCCEEEEEEeCCC
Q 028466           57 TVRLQLWDTAGQERFRSLIPSYIR--------DSSVAVIVYDVAS   93 (208)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~   93 (208)
                      ++..+++.|.|......+...|..        .-|++|-|+|+-+
T Consensus       145 kfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~  189 (391)
T KOG2743|consen  145 KFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKH  189 (391)
T ss_pred             CcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhh
Confidence            356788899998776655544422        2489999999864

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=96.90  E-value=0.00079  Score=46.32  Aligned_cols=24  Identities=17%  Similarity=0.405  Sum_probs=22.0

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      ....+|+|.|.||+|||||..++.
T Consensus         5 r~~PNILvtGTPG~GKstl~~~la   28 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLA   28 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHH
Confidence            567899999999999999999986

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.89  E-value=0.00093  Score=47.99  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=19.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~   30 (208)
                      .-.++|+|+.|+|||||++.+.
T Consensus        21 G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          21 NVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            4578999999999999999875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.88  E-value=0.00081  Score=49.22  Aligned_cols=22  Identities=14%  Similarity=0.309  Sum_probs=18.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      --.+++||+|||||||++.|-.
T Consensus        34 ~VTAlIGPSGcGKST~LR~lNR   55 (253)
T COG1117          34 KVTALIGPSGCGKSTLLRCLNR   55 (253)
T ss_pred             ceEEEECCCCcCHHHHHHHHHh
Confidence            3468999999999999998743

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.88  E-value=0.00099  Score=45.12  Aligned_cols=26  Identities=15%  Similarity=0.224  Sum_probs=21.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFD   35 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~   35 (208)
                      -.++|+|++|+|||+++..+...-..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            46899999999999999998765443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=96.88  E-value=0.0053  Score=43.24  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      -+.|+|.++||||||++++...
T Consensus         4 Il~ivG~k~SGKTTLie~lv~~   25 (161)
T COG1763           4 ILGIVGYKNSGKTTLIEKLVRK   25 (161)
T ss_pred             EEEEEecCCCChhhHHHHHHHH
Confidence            3679999999999999998643

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=96.87  E-value=0.00098  Score=45.04  Aligned_cols=21  Identities=19%  Similarity=0.360  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q 028466           12 LVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~   32 (208)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999988754

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.87  E-value=0.00089  Score=45.05  Aligned_cols=21  Identities=24%  Similarity=0.259  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q 028466           12 LVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~   32 (208)
                      |+|.|.+||||||+.+.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988654

...

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.86  E-value=0.00088  Score=48.15  Aligned_cols=22  Identities=14%  Similarity=0.255  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .++|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999988654

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.84  E-value=0.0011  Score=48.93  Aligned_cols=26  Identities=15%  Similarity=0.231  Sum_probs=22.6

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .+...|+|.|++|||||||.+.|...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            35689999999999999999988753

>PRK05541 adenylylsulfate kinase; Provisional

Probab=96.84  E-value=0.0014  Score=46.98  Aligned_cols=29  Identities=24%  Similarity=0.259  Sum_probs=23.1

Q ss_pred             CCCCCCCcceeEEEEcCCCCcHHHHHHHhhc
Q 028466            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      |.++..  ..-|++.|.+|+||||+.+.+..
T Consensus         1 ~~~~~~--~~~I~i~G~~GsGKst~a~~l~~   29 (176)
T PRK05541          1 MQMKPN--GYVIWITGLAGSGKTTIAKALYE   29 (176)
T ss_pred             CCCCCC--CCEEEEEcCCCCCHHHHHHHHHH
Confidence            555553  36899999999999999998763

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=96.82  E-value=0.02  Score=44.45  Aligned_cols=20  Identities=15%  Similarity=0.275  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCcHHHHHHHhh
Q 028466           11 KLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~   30 (208)
                      .|+|.|.+|+||||+++.|-
T Consensus         8 ~i~i~G~~GsGKtt~~~~l~   27 (288)
T PRK05416          8 LVIVTGLSGAGKSVALRALE   27 (288)
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            68899999999999999984

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.82  E-value=0.0013  Score=52.90  Aligned_cols=92  Identities=18%  Similarity=0.286  Sum_probs=51.4

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhh----cCCC------CCCccc-----------eeeeeeeEEEEEE-------------
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFM----YDKF------DNTYQA-----------TIGIDFLSKTMYL-------------   53 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~----~~~~------~~~~~~-----------~~~~~~~~~~~~~-------------   53 (208)
                      ++..|+++|..|+||||..-.|.    ....      .+.|.|           ..+++++.....-             
T Consensus        99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a  178 (451)
T COG0541          99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA  178 (451)
T ss_pred             CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence            46789999999999999887653    1111      111111           1112222211000             


Q ss_pred             CCeEEEEEEEecCCchhhccchhh------hhccCCEEEEEEeCCChhhHHh
Q 028466           54 EDRTVRLQLWDTAGQERFRSLIPS------YIRDSSVAVIVYDVASRQSFLN   99 (208)
Q Consensus        54 ~~~~~~~~i~D~~G~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~   99 (208)
                      ....+.+.|+||+|-.........      ..-+.|=+++|.|+.-.+....
T Consensus       179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~  230 (451)
T COG0541         179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVN  230 (451)
T ss_pred             HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHH
Confidence            012357999999995443332222      1346789999999986544433

>PRK03839 putative kinase; Provisional

Probab=96.82  E-value=0.0011  Score=47.82  Aligned_cols=21  Identities=24%  Similarity=0.355  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      +|+|+|.+|+||||+.++|..
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~   22 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAE   22 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998864

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=96.81  E-value=0.00055  Score=54.35  Aligned_cols=59  Identities=22%  Similarity=0.244  Sum_probs=0.0

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCC
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (208)
                      ++-+.+-|.++|-|++||||+||+|...++-......-++..-....-...    +-++|+||
T Consensus       303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkr----IfLIDcPG  361 (572)
T KOG2423|consen  303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKR----IFLIDCPG  361 (572)
T ss_pred             cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhc----eeEecCCC

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.80  E-value=0.0011  Score=50.31  Aligned_cols=21  Identities=19%  Similarity=0.286  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      -++|+|+.|||||||++.+.+
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            468999999999999999875

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.80  E-value=0.0012  Score=47.26  Aligned_cols=23  Identities=17%  Similarity=0.300  Sum_probs=19.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .=.++|+|++|+|||||+|-+.+
T Consensus        25 ge~vAi~GpSGaGKSTLLnLIAG   47 (231)
T COG3840          25 GEIVAILGPSGAGKSTLLNLIAG   47 (231)
T ss_pred             CcEEEEECCCCccHHHHHHHHHh
Confidence            34689999999999999997654

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.79  E-value=0.0011  Score=47.55  Aligned_cols=22  Identities=23%  Similarity=0.545  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .|+|+|++|+|||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4789999999999999999864

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=96.78  E-value=0.0077  Score=47.92  Aligned_cols=26  Identities=15%  Similarity=0.364  Sum_probs=22.6

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      ...+|+|.|+.|+|||||++.|+..-
T Consensus       161 ~~~nilI~G~tGSGKTTll~aLl~~i  186 (344)
T PRK13851        161 GRLTMLLCGPTGSGKTTMSKTLISAI  186 (344)
T ss_pred             cCCeEEEECCCCccHHHHHHHHHccc
Confidence            35789999999999999999998653

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.78  E-value=0.014  Score=48.53  Aligned_cols=85  Identities=8%  Similarity=-0.011  Sum_probs=42.6

Q ss_pred             EEEEEEeCCChh---hHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466           84 VAVIVYDVASRQ---SFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK  160 (208)
Q Consensus        84 ~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (208)
                      .+|+|=|+-+--   ..+.++..+..+.++  ...|+|++++-+-..+.........+.+-...++..+....-...-++
T Consensus       196 ~liLveDLPn~~~~d~~~~f~evL~~y~s~--g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MK  273 (634)
T KOG1970|consen  196 KLILVEDLPNQFYRDDSETFREVLRLYVSI--GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMK  273 (634)
T ss_pred             eEEEeeccchhhhhhhHHHHHHHHHHHHhc--CCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHH
Confidence            457887776532   233334444422222  357788888766553221111111122223445666666666666666


Q ss_pred             HHHHHHHHHc
Q 028466          161 ALFRKIAAAL  170 (208)
Q Consensus       161 ~~~~~l~~~~  170 (208)
                      +.+..|....
T Consensus       274 K~L~ric~~e  283 (634)
T KOG1970|consen  274 KFLKRICRIE  283 (634)
T ss_pred             HHHHHHHHHh
Confidence            6666665544

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.77  E-value=0.0013  Score=49.34  Aligned_cols=25  Identities=28%  Similarity=0.719  Sum_probs=21.8

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      ..++++|+|++|||||+|+..++..
T Consensus        12 ~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   12 DPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHh
Confidence            3489999999999999999988754

This is thought to be an ATPase involved in viral DNA packaging [].

>PTZ00088 adenylate kinase 1; Provisional

Probab=96.77  E-value=0.0015  Score=48.90  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=20.4

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      ..++|+|+|++||||||+...|.
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La   27 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILS   27 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHH
Confidence            34789999999999999999875

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.76  E-value=0.0012  Score=47.70  Aligned_cols=21  Identities=14%  Similarity=0.316  Sum_probs=18.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~   30 (208)
                      ..|+|+|++||||||+.+.+.
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468899999999999999887

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.74  E-value=0.0012  Score=48.30  Aligned_cols=21  Identities=19%  Similarity=0.378  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q 028466           12 LVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~   32 (208)
                      |.|.|++|||||||.+.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998654

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.72  E-value=0.00081  Score=50.47  Aligned_cols=163  Identities=15%  Similarity=0.161  Sum_probs=93.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECC-eEEEEEEEecCCchhhccchhhhhc----c
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIR----D   81 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~----~   81 (208)
                      .++..|++.|..+.  |++|++...+.-. ...++...+|........+ ..--.++|+.+|......+..--+.    .
T Consensus        43 ~~E~~I~~~Gn~~~--tt~I~~~FdR~e~-~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~  119 (363)
T KOG3929|consen   43 KFEFFIGSKGNGGK--TTIILRCFDRDEP-PKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLR  119 (363)
T ss_pred             cceeEEEEecCCce--eEeehhhcCcccC-CCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchh
Confidence            46778888887654  8899887765432 2345555555554433322 1223578999887655443322111    2


Q ss_pred             CCEEEEEEeCCChhhH-HhHHHHHHHHH----------------------hh--------c-------CCCCeEEEEEeC
Q 028466           82 SSVAVIVYDVASRQSF-LNTTKWVEEVR----------------------TE--------R-------GSDVIIVLVGNK  123 (208)
Q Consensus        82 ~d~~i~v~d~~~~~s~-~~~~~~~~~~~----------------------~~--------~-------~~~~~iivv~nK  123 (208)
                      .=.+|++.|+++++.+ ..++..+..++                      +.        .       ...+|+++|+.|
T Consensus       120 ~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsK  199 (363)
T KOG3929|consen  120 TFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSK  199 (363)
T ss_pred             hhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccc
Confidence            2467889999987543 11221111111                      00        0       123689999999


Q ss_pred             CCCcCccCc-----CHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466          124 TDLVDKRQV-----SIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       124 ~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~~~  172 (208)
                      .|.....+.     ...-.+..+..+|+.++..|++-..-.+.+.+.+.+...+
T Consensus       200 YDvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskMe~l~K~~r~~i~HlaFG  253 (363)
T KOG3929|consen  200 YDVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKMEALLKKIRGVINHLAFG  253 (363)
T ss_pred             hhhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhhHHHhhcC
Confidence            998654332     1234455666778877777887655555555555555433

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.72  E-value=0.01  Score=45.53  Aligned_cols=84  Identities=13%  Similarity=0.191  Sum_probs=42.4

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (208)
                      -|+|.|+.|+||||+++.++..-.... ....+++- ..++...+ ..++.+....| ..|.......++..-=+|++-.
T Consensus        82 lilisG~tGSGKTT~l~all~~i~~~~-~~iitiEd-p~E~~~~~-~~q~~v~~~~~-~~~~~~l~~~lR~~PD~i~vgE  157 (264)
T cd01129          82 IILVTGPTGSGKTTTLYSALSELNTPE-KNIITVED-PVEYQIPG-INQVQVNEKAG-LTFARGLRAILRQDPDIIMVGE  157 (264)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhhCCCC-CeEEEECC-CceecCCC-ceEEEeCCcCC-cCHHHHHHHHhccCCCEEEecc
Confidence            488999999999999998875432211 11111111 11111222 11233222111 2355555556665444556666


Q ss_pred             CCChhhHH
Q 028466           91 VASRQSFL   98 (208)
Q Consensus        91 ~~~~~s~~   98 (208)
                      +.+++++.
T Consensus       158 iR~~e~a~  165 (264)
T cd01129         158 IRDAETAE  165 (264)
T ss_pred             CCCHHHHH
Confidence            66665544

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.70  E-value=0.002  Score=47.38  Aligned_cols=24  Identities=17%  Similarity=0.166  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      =.++|+|+.|+|||||++.+.+..
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          27 EIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999988754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.70  E-value=0.0014  Score=44.98  Aligned_cols=21  Identities=19%  Similarity=0.445  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      .|+++|++|+|||+|++.+..
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~   21 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAA   21 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            379999999999999998763

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	208
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		1e-85
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		6e-85
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		8e-85
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		1e-81
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		2e-81
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		3e-79
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		1e-76
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		1e-66
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		5e-40
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		3e-39
2efc_B	181	Ara7-GdpATVPS9A Length = 181		3e-39
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		4e-39
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		5e-39
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		6e-39
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		6e-39
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		8e-39
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		8e-39
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		1e-38
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		4e-38
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		5e-38
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		9e-38
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		1e-37
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		2e-37
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		5e-37
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		5e-37
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		6e-37
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		2e-35
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		2e-35
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		3e-35
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		4e-35
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		7e-35
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		8e-35
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		4e-34
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		1e-33
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		1e-33
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		5e-33
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		5e-33
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		6e-33
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		6e-33
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		7e-33
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		8e-33
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		9e-33
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		9e-33
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		1e-32
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		1e-32
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		1e-32
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		1e-32
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		1e-32
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		1e-32
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		2e-32
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		2e-32
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		2e-32
4fmc_B	171	Espg-Rab1 Complex Length = 171		2e-32
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		2e-32
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		3e-32
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		3e-32
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		4e-32
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		6e-32
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		1e-31
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-31
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		2e-31
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		2e-31
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		3e-31
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		3e-31
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		3e-31
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		4e-31
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		5e-31
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		5e-31
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		5e-31
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		1e-30
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		2e-30
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		4e-30
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		6e-30
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		6e-30
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		1e-29
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		2e-29
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		2e-29
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		5e-29
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		1e-28
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		1e-28
1vg1_A	185	Gdp-bound Rab7 Length = 185		2e-28
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		3e-28
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		4e-28
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		1e-27
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		1e-27
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		1e-27
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		3e-27
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		5e-27
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		6e-27
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		7e-27
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-26
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-26
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		5e-26
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		5e-26
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		7e-26
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		1e-25
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		1e-25
4fmc_F	117	Espg-Rab1 Complex Length = 117		3e-25
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		7e-25
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		2e-24
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		3e-24
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		3e-24
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		4e-24
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		8e-24
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		1e-23
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		3e-23
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		4e-22
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		2e-21
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		1e-20
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		1e-20
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		1e-20
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		2e-20
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		2e-20
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		2e-20
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		2e-20
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		2e-20
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		4e-20
1byu_A	216	Canine Gdp-Ran Length = 216		4e-20
2bku_A	177	Kap95p:rangtp Complex Length = 177		5e-20
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		6e-20
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		7e-20
3icq_B	171	Karyopherin Nuclear State Length = 171		7e-20
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		1e-19
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		1e-19
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-19
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		2e-19
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		6e-19
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		1e-18
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		1e-18
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		1e-18
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		2e-18
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		3e-18
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		3e-18
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		9e-18
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-17
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		1e-17
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		1e-17
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		2e-17
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-17
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		3e-17
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		3e-17
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		4e-17
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		4e-17
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		9e-17
1mh1_A	186	Small G-Protein Length = 186		1e-16
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		1e-16
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		2e-16
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		2e-16
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-16
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		2e-16
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		3e-16
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		3e-16
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		3e-16
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		4e-16
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		4e-16
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		5e-16
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		5e-16
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		5e-16
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		5e-16
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		6e-16
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		6e-16
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		7e-16
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		7e-16
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		7e-16
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		7e-16
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		7e-16
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		7e-16
1s1c_A	183	Crystal Structure Of The Complex Between The Human		7e-16
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		8e-16
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		8e-16
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		8e-16
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		8e-16
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		8e-16
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		8e-16
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		8e-16
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		8e-16
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		9e-16
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		9e-16
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		9e-16
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		1e-15
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		1e-15
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		1e-15
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		1e-15
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		1e-15
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		2e-15
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		3e-15
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		4e-15
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		4e-15
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		4e-15
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		5e-15
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		6e-15
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		6e-15
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		8e-15
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		9e-15
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		9e-15
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		1e-14
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		1e-14
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		1e-14
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		1e-14
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		1e-14
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		1e-14
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		1e-14
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		2e-14
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		2e-14
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		2e-14
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		3e-14
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		3e-14
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		4e-14
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		5e-14
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		5e-14
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		5e-14
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		6e-14
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		6e-14
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		6e-14
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		6e-14
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		6e-14
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		8e-14
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		8e-14
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		8e-14
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		9e-14
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		9e-14
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		9e-14
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		9e-14
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		1e-13
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		1e-13
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		1e-13
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		1e-13
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		1e-13
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		1e-13
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		1e-13
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		1e-13
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		1e-13
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		1e-13
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		1e-13
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		1e-13
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		1e-13
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		1e-13
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		2e-13
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		2e-13
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		4e-13
2kb0_A	178	Cdc42(T35a) Length = 178		5e-13
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		6e-13
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		6e-13
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		6e-13
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		6e-13
4q21_A	189	Molecular Switch For Signal Transduction: Structura		7e-13
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		7e-13
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		9e-13
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		1e-12
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		1e-12
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		1e-12
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		1e-12
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-12
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		2e-12
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		2e-12
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		2e-12
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		2e-12
1wq1_R	166	Ras-Rasgap Complex Length = 166		2e-12
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-12
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		2e-12
6q21_A	171	Molecular Switch For Signal Transduction: Structura		2e-12
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		2e-12
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		2e-12
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		2e-12
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		3e-12
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		3e-12
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		4e-12
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-12
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		5e-12
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		5e-12
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		6e-12
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		6e-12
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		7e-12
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-12
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		9e-12
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		1e-11
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		1e-11
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		1e-11
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		1e-11
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-11
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		1e-11
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		1e-11
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-11
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		2e-11
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		2e-11
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		2e-11
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		4e-11
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		5e-11
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		7e-11
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		3e-09
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		3e-09
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		9e-08
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		1e-07
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		1e-07
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		4e-07
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		4e-07
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		7e-07
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-06
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		6e-06
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		9e-06
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		2e-05
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		2e-05
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		2e-05
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		2e-05
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		2e-05
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		6e-05
3dpu_A	535	Roccor Domain Tandem Of Rab Family Protein (Roco) L		6e-05
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		2e-04
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		2e-04
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		2e-04
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		2e-04
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		3e-04
2gao_A	208	Crystal Structure Of Human Sar1a In Complex With Gd		4e-04
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		5e-04
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		5e-04
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		5e-04

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  311 bits (798), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 147/204 (72%), Positives = 172/204 (84%), Gaps = 4/204 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 68
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
           TAG ERFRSLIPSYIRDS+ AV+VYD+ +  SF  TTKW+++VRTERGSDVII+LVGNKT
Sbjct: 69  TAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDL 184
           DL DKRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGME+     +ED+
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188
Query: 185 VDVNLKXXXXXXXXXXXXXGGCAC 208
           +D+ L+             GGC+C
Sbjct: 189 IDIKLE----KPQEQPVSEGGCSC 208

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  309 bits (792), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 145/186 (77%), Positives = 168/186 (90%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 2   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 61
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
           TAG ERFRSLIPSYIRDS+VAV+VYD+ +  SF  TTKW+++VRTERGSDVII+LVGNKT
Sbjct: 62  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 121
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDL 184
           DL DKRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGME+     +ED+
Sbjct: 122 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 181
Query: 185 VDVNLK 190
           +D+ L+
Sbjct: 182 IDIKLE 187

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  309 bits (791), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 148/202 (73%), Positives = 171/202 (84%), Gaps = 4/202 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 12  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 71
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
           TAG ERFRSLIPSYIRDS+VAV+VYD+ +  SF  TTKW+++VRTERGSDVII+LVGNKT
Sbjct: 72  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 131
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDL 184
           DL DKRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGME+     +ED+
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 191
Query: 185 VDVNLKXXXXXXXXXXXXXGGC 206
           +D+ L+             GGC
Sbjct: 192 IDIKLE----KPQEQPVSEGGC 209

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  298 bits (764), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 140/169 (82%), Positives = 157/169 (92%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 2   SPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 61
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+ AV+VYD+ +  SF  TTKW+++VRTERGSDVII+LVGNKT
Sbjct: 62  TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 121
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGM 173
           DL DKRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGM
Sbjct: 122 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 170

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  297 bits (761), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 139/170 (81%), Positives = 158/170 (92%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 10  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 69
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+VAV+VYD+ +  SF  T+KW+++VRTERGSDVII+LVGNKT
Sbjct: 70  TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKT 129
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGME 174
           DL DKRQVS EEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGM+
Sbjct: 130 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 179

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  290 bits (743), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 137/162 (84%), Positives = 153/162 (94%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ
Sbjct: 1   KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 60
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           ERFRSLIPSYIRDS+VAV+VYD+ +  SF  TTKW+++VRTERGSDVII+LVGNKTDL D
Sbjct: 61  ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 120
Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           KRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAAL
Sbjct: 121 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  282 bits (721), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 130/163 (79%), Positives = 152/163 (93%)
Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
            K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG
Sbjct: 1   GKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 60
Query: 68  QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV 127
           QERFRSLIPSYIRDS+VAV+VYD+ +  SF  T+KW+++VRTERGSDVII+LVGNKTDL 
Sbjct: 61  QERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLA 120
Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           DKRQ++IEEGE +A+EL+VMFIETSAK G+N+K LFR++A+AL
Sbjct: 121 DKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  248 bits (634), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 117/162 (72%), Positives = 137/162 (84%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           KYKLVFLG+Q+VGKTSIITRF YD FDN YQ+TIGIDFLSKT+YL++  VRLQLWDTAGQ
Sbjct: 1   KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ 60
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           ERFRSLIPSYIRDS+ A++VYD+ +RQSF NTTKW++++  ERG DVII LVGNKTDL D
Sbjct: 61  ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD 120
Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
            R+V+ EEG  KA+E N  F ETSAKAG NIK LF+K A+ L
Sbjct: 121 LRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  160 bits (404), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 114/170 (67%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++++ L+D TV+ ++WD
Sbjct: 4   SKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWD 63
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
           TAGQER+ SL P Y R +  A++VYD+ ++++F     WV+E++ +    ++I L GNK 
Sbjct: 64  TAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKA 123
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGME 174
           DL +KR V  EE +A A + +++F+ETSAK   N+  LF  IA  LP  E
Sbjct: 124 DLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSE 173

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  157 bits (398), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 112/165 (67%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 5   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R +  A++VYD+ + +SF     WV+E++ +   +++I L GNK DL
Sbjct: 65  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
            +KR V  +E ++ A + +++F+ETSAK   N+  +F  IA  LP
Sbjct: 125 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 169

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  157 bits (397), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 111/161 (68%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV LGD   GK+S++ RF+ D+F    ++TIG  F S+T+ + D TV+ ++WDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
           + SL P Y R ++ A+IV+DV ++ SF    KWV+E++ +   ++++ L GNK+DL+D R
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
           +V+ E+ +  A+E  + F+ETSAK   N+K +F +IA  LP
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLP 174

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  157 bits (397), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 112/165 (67%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R +  A++VYD+ + +SF     WV+E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
            +KR V  +E ++ A + +++F+ETSAK   N+  +F  IA  LP
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  157 bits (396), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 111/165 (67%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+  VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R +  A++VYD+ + +SF     WV+E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
            +KR V  +E ++ A + +++F+ETSAK   N+  +F  IA  LP
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  157 bits (396), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 111/165 (67%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+  VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R +  A++VYD+ + +SF     WV+E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
            +KR V  +E ++ A + +++F+ETSAK   N+  +F  IA  LP
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  157 bits (396), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 111/165 (67%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+  VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R +  A++VYD+ + +SF     WV+E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
            +KR V  +E ++ A + +++F+ETSAK   N+  +F  IA  LP
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  156 bits (394), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 111/165 (67%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 5   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R +  A++VYD+ + +SF     WV+E++ +   +++I L GNK DL
Sbjct: 65  GQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
            +KR V  +E ++ A + +++F ETSAK   N+  +F  IA  LP
Sbjct: 125 ANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLP 169

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  156 bits (394), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 111/165 (67%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+  VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R +  A++VYD+ + +SF     WV+E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
            +KR V  +E ++ A + +++F+ETSAK   N+  +F  IA  LP
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  155 bits (393), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 111/165 (67%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+  VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R +  A++VYD+ + +SF     WV+E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
            +KR V  +E ++ A + +++F+ETSAK   N+  +F  IA  LP
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  154 bits (389), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 111/165 (67%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 3   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
           G ER+ SL P Y R +  A++VYD+ + +SF     WV+E++ +   +++I L GNK DL
Sbjct: 63  GLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 122
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
            +KR V  +E ++ A + +++F+ETSAK   N+  +F  IA  LP
Sbjct: 123 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 167

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  153 bits (387), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 110/166 (66%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++ ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDT
Sbjct: 2   SICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDT 61
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTD 125
           AG ER+ SL P Y R +  A++VYD+ +  +F     WV+E++ +   +++I L GNK D
Sbjct: 62  AGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKAD 121
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
           L  KR V  +E +A A + +++F+ETSAK   N+  +F  IA  LP
Sbjct: 122 LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP 167

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  152 bits (385), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 109/164 (66%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 1   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 60
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R +  A++VYD+ +  +F     WV+E++ +   +++I L GNK DL
Sbjct: 61  GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 120
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
             KR V  +E +A A + +++F+ETSAK   N+  +F  IA  L
Sbjct: 121 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 107/171 (62%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           SA+ + K+  LGD  VGK+SI+ RF+ D FD+    TIG  F++KT+   +   +  +WD
Sbjct: 19  SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
           TAGQERF SL P Y R S+ AVIVYD+  + SF    KWV+E++     ++++ + GNK 
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKC 138
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMET 175
           DL D R+V +++ +  A  +  + +ETSAK   NI+ LF+ I+  +P ++ 
Sbjct: 139 DLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDP 189

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 106/164 (64%), Gaps = 3/164 (1%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV LG+ +VGK+SI+ RF+ + F    + TIG  FL++ + + + TV+ ++WDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD-- 128
           F SL P Y R++  A++VYDV   QSF+    WV+E+  +   D+II LVGNK D +   
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 129 -KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
            +R+V+ EEGE  A E  ++F ETSAK G N+  +F  I   +P
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  150 bits (379), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 70/162 (43%), Positives = 110/162 (67%), Gaps = 1/162 (0%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD SVGKT ++ RF    F     +TIG+DF  KT+ ++ + V+LQ+WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  SY R ++ A++ YD+  R SFL+   W+E+VR   GS+++ +L+GNK+DL + 
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149
Query: 130 RQVSIEEGEAKARELNVMF-IETSAKAGFNIKALFRKIAAAL 170
           R+VS+ E ++ A   +++  IETSAK   N++  F ++A  L
Sbjct: 150 REVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  150 bits (379), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 72/162 (44%), Positives = 107/162 (66%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D + ++Y +TIG+DF  +T+ LE++TV+LQ+WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  SY R +   +IVYDV  R SF N  +W++E+      +V  +LVGNK DLV K
Sbjct: 70  RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSK 129
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
           R V+ +EG   A    + FIETSAK  +N++  F  +A  + 
Sbjct: 130 RVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIK 171

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  150 bits (378), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 109/165 (66%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++ ++KLV LG+ +VGK+S++ RF+  +F    ++TI   FL++T+ L+D TV+ ++WDT
Sbjct: 2   SICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDT 61
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTD 125
           AGQER+ SL P Y R +  A++VYD+ +  +F     WV+E++ +   +++I L GNK D
Sbjct: 62  AGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKAD 121
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           L  KR V  +E +A A + +++F+ETSAK   N+  +F  IA  L
Sbjct: 122 LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 106/158 (67%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  +Y R +   ++VYD+ + +SF N   W+  +     +DV  +++GNK D+ DK
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           RQVS E GE  A +  + F+ETSAKA  N++  F  +A
Sbjct: 127 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 164

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 106/158 (67%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  +Y R +   ++VYD+ + +SF N   W+  +     +DV  +++GNK D+ DK
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           RQVS E GE  A +  + F+ETSAKA  N++  F  +A
Sbjct: 129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 111/169 (65%), Gaps = 8/169 (4%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
            FRS+  SY R ++ A++VYD+  R++F + T W+E+ R    S+++I+L+GNK+DL  +
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNI--------KALFRKIAAAL 170
           R V  EEGEA ARE  ++F+ETSAK   N+        K ++RKI   L
Sbjct: 142 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGL 190

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  144 bits (362), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 101/166 (60%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           +L + K+  LGD  VGK+SI+ RF+ D FD     TIG  F++KT+  ++   +  +WDT
Sbjct: 2   SLRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 61
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTD 125
           AGQERFR+L P Y R S+ A+IVYD+   ++F     WV E+R      +++ + GNK D
Sbjct: 62  AGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 121
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
           L D R+V   + +  A  ++ +F+ETSAK   NI  LF +I+  +P
Sbjct: 122 LTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 167

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  143 bits (360), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 106/154 (68%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 11  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
            FRS+  SY R ++ A++VYD+  R +F + T W+E+ R    S+++I+L+GNK+DL  +
Sbjct: 71  SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESR 130
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           R+V  EEGEA ARE  ++F+ETSAK   N++  F
Sbjct: 131 REVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 164

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  143 bits (360), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 101/167 (60%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           SAL + K+  LGD  VGK+SI+ RF+ D FD     TIG  F++KT+  ++   +  +WD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
           TAG ERFR+L P Y R S+ A+IVYD+   ++F     WV E+R      +++ + GNK 
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
           DL D R+V   + +  A  ++ +F+ETSAK   NI  LF +I+  +P
Sbjct: 122 DLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 81/204 (39%), Positives = 118/204 (57%), Gaps = 11/204 (5%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+  VGK+ ++ RF  D + N Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  SY R S   +IVYDV  ++SF     W++E+     S V+ +LVGNK DL DK
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP---GMETLSST--KQEDL 184
           R V  +  +  A    + F+ETSA    N++  F  +A  +      + L+ T  K+ED 
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDK 188
Query: 185 VDVNLKXXXXXXXXXXXXXGGCAC 208
            +VNLK             GGC C
Sbjct: 189 GNVNLK------GQSLTNTGGCCC 206

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 98/154 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R+  +KF++ +  T+G  FL+K + +  + V L +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RF +L P Y RDS+ A++VYD+    SF     WV+E+R   G+++ + +VGNK DL  +
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           R VSI+E E+ A  +      TSAK    I+ LF
Sbjct: 127 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  139 bits (349), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 105/166 (63%)
Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           + P  +   +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++L
Sbjct: 14  LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKL 73
Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
           Q+WDTAGQER+R++  +Y R +   +++YD+A+++SF     W  +++T    +  ++LV
Sbjct: 74  QIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILV 133
Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           GNK DL D+R V  E+G   A +L   F E SAK   N+K +F ++
Sbjct: 134 GNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERL 179

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  137 bits (345), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQER
Sbjct: 22  KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
           FR++  +Y R +   ++VYDV   ++F N  +W + V      +  ++LVGNK+D+ + R
Sbjct: 82  FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 140
Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
            V+ ++GEA A+EL + FIE+SAK   N+  +F  +A
Sbjct: 141 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 177

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  137 bits (345), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQER
Sbjct: 9   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 68
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
           FR++  +Y R +   ++VYDV   ++F N  +W + V      +  ++LVGNK+D+ + R
Sbjct: 69  FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 127
Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
            V+ ++GEA A+EL + FIE+SAK   N+  +F  +A
Sbjct: 128 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 164

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  137 bits (344), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 102/162 (62%), Gaps = 1/162 (0%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +K++ +GD  VGKT ++ RF    F   T+ +T+GIDF +K + ++   V+LQ+WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           ERFRS+  +Y RD+   +++YDV ++ SF N   W+ E+      DV ++L+GNK D   
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130
Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           +R V  E+GE  A+E  + F+ETSAK G N+   F  IA  L
Sbjct: 131 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  137 bits (344), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 69/177 (38%), Positives = 107/177 (60%), Gaps = 5/177 (2%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ +    V+LQ+WDTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFRS+  SY R ++  ++ YD+   +SF    +W+ E+     + VI VLVGNK DL ++
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVD 186
           R+VS +  E  +   ++ ++ETSAK   N++ LF  +A  L     +S  +Q  LV+
Sbjct: 147 REVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL-----ISEARQNTLVN 198

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  136 bits (343), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 80/203 (39%), Positives = 117/203 (57%), Gaps = 10/203 (4%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+  VGK+ ++ RF  D + N Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  SY R S   +IVYDV  ++SF     W++E+     S V+ +LVGNK DL DK
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP---GMETLSST--KQEDL 184
           R V  +  +  A    + F+ETSA    N++  F  +A  +      + L+ T  K+ED 
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDK 188
Query: 185 VDVNLKXXXXXXXXXXXXXGGCA 207
            +VNLK             GGC 
Sbjct: 189 GNVNLK-----GQSLTNTGGGCC 206

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  136 bits (342), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 103/161 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  SY R +   ++VYDV  ++SF N  +W++E+      +V  +LVGNK DL  K
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           + V     +  A  L + F+ETSAK   N++  F  +AA +
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  136 bits (342), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 108/170 (63%), Gaps = 3/170 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  SY R +   ++VYDV  ++S+ N  +W++E+      +V  +LVGNK+DL  K
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP---GMETL 176
           + V     +  A  L + F+ETSAK   N++  F  +AA +    G+E L
Sbjct: 130 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGLEVL 179

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  136 bits (342), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 109/157 (69%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R +  +Y R +  A++VYD+A   ++ N  +W++E+R    S+++I+LVGNK+DL   
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           R V  +E  A A + N+ FIETSA    N++  F+ I
Sbjct: 126 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 104/163 (63%)
Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           A +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAG
Sbjct: 5   ALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 64
Query: 68  QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV 127
           QERFR++  SY R +   ++VYDV  ++SF N  +W++E+      +V  +LVGNK DL 
Sbjct: 65  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
            K+ V     +  A  L + F+ETSAK   N++  F  +AA +
Sbjct: 125 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/154 (41%), Positives = 97/154 (62%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R+  +KF++ +  T+   FL+K + +  + V L +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RF +L P Y RDS+ A++VYD+    SF     WV+E+R   G+++ + +VGNK DL  +
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           R VSI+E E+ A  +      TSAK    I+ LF
Sbjct: 127 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/154 (41%), Positives = 97/154 (62%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R+  +KF++ +  T+   FL+K + +  + V L +WDTAGQE
Sbjct: 21  FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 80
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RF +L P Y RDS+ A++VYD+    SF     WV+E+R   G+++ + +VGNK DL  +
Sbjct: 81  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 140
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           R VSI+E E+ A  +      TSAK    I+ LF
Sbjct: 141 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 174

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
           FR++  +Y R +   ++VYDV   ++F N  +W + V      +  ++LVGNK+D  + R
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
            V+ ++GEA A+EL + FIE+SAK   N+  +F  +A
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  135 bits (340), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 110/157 (70%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A++VYD+A   ++ N  +W++E+R    S+++I+LVGNK+DL   
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           R V  +E  A A +  + FIETSA    N++A F+ I
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  135 bits (340), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 103/161 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 26  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  SY R +   ++VYDV  ++SF N  +W++E+      +V  +LVGNK DL  K
Sbjct: 86  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 145
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           + V     +  A  L + F+ETSAK   N++  F  +AA +
Sbjct: 146 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 110/157 (70%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 21  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A++VYD+A   ++ N  +W++E+R    S+++I+LVGNK+DL   
Sbjct: 81  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 140
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           R V  +E  A A +  + FIETSA    N++A F+ I
Sbjct: 141 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 177

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 102/161 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK  ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  SY R +   ++VYDV  ++SF N  +W++E+      +V  +LVGNK DL  K
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           + V     +  A  L + F+ETSAK   N++  F  +AA +
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 104/161 (64%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  SY R +   ++VYDV  ++S+ N  +W++E+      +V  +LVGNK+DL  K
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           + V     +  A  L + F+ETSAK   N++  F  +AA +
Sbjct: 130 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 103/161 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  SY R +   ++VYDV  ++SF N  +W++E+      +V  +LVGNK DL  K
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           + V     +  A  L + F+ETSAK   N++  F  +AA +
Sbjct: 127 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQ+WDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
           FR++  +Y R +   ++VYD+   ++F N  +W + V      +  ++LVGNK+D+ + R
Sbjct: 65  FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 123
Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
            V+ ++GEA A+EL + FIE+SAK   N+  +F  +A
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  134 bits (338), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 102/161 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  SY R +   ++VYDV  ++SF N  +W++E+      +V  +LVGNK DL  K
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           + V     +  A  L + F+ETSAK   N++  F   AA +
Sbjct: 154 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQ+WDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
           FR++  +Y R +   ++VYD+   ++F N  +W + V      +  ++LVGNK+D  + R
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
            V+ ++GEA A+EL + FIE+SAK   N+  +F  +A
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 65/160 (40%), Positives = 102/160 (63%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
           FR++  SY R +   ++VYDV  ++SF N  +W++E+      +V  +LVGNK DL  K+
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
            V     +  A  L + F+ETSAK   N++  F  +AA +
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  133 bits (335), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 103/157 (65%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++T+ +E + ++ Q+WDTAGQE
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A+IVYD++   S+ N   W+ E+R     +V + L+GNK+DL   
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL 133
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           R V  EE +  A+E  ++F ETSA    N+   F ++
Sbjct: 134 RAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 109/157 (69%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A++VYD+A   ++ N  +W++E+R    S+++I+LVGNK+DL   
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           R V  +E  A A +  + FIETSA    N++A F+ I
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 103/158 (65%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G    GK+ ++ +F+ +KF      TIG++F S+ + +  +TV+LQ+WDTAGQE
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFRS+  SY R ++ A++VYD+ SR+++ +   W+ + RT    +++++L GNK DL  +
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           R+V+  E    A+E  +MF+ETSA  G N++  F K A
Sbjct: 146 REVTFLEASRFAQENELMFLETSALTGENVEEAFLKCA 183

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 109/157 (69%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 9   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A++VYD+A   ++ N  +W++E+R    S+++I+LVGNK+DL   
Sbjct: 69  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 128
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           R V  +E  A A +  + FIETSA    N++A F+ I
Sbjct: 129 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 165

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 102/161 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  SY R +   ++VYDV  ++SF N  +W++E+      +V  +LVG K DL  K
Sbjct: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTK 128
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           + V     +  A  L + F+ETSAK   N++  F  +AA +
Sbjct: 129 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+S++ RF  + F  +Y  TIG+DF  +T+ +    V+LQ+WDTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  +Y R +   ++VYDV S +SF+N  +W+ E+  +   DV  +LVGNK D  ++
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-NQNCDDVCRILVGNKNDDPER 128
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           + V  E+    A ++ +   ETSAK   N++ +F  I
Sbjct: 129 KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 108/157 (68%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A++VYD+A   ++ N  +W++E+R    S+++I LVGNK+DL   
Sbjct: 66  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 125
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           R V  +E  A A +  + FIETSA    N++A F+ I
Sbjct: 126 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 162

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 108/157 (68%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A++VYD+A   ++ N  +W++E+R    S+++I LVGNK+DL   
Sbjct: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 131
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           R V  +E  A A +  + FIETSA    N++A F+ I
Sbjct: 132 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 168

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 106/164 (64%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  D+F+   ++TIG++F ++T+ +E++ ++ Q+WDTAG E
Sbjct: 11  FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A+IVYD++   S+ N   W+ E+R     +V + L+GNK+DL   
Sbjct: 71  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHL 130
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGM 173
           R V  +E +  A E  ++F ETSA    N+   FR++  A+  M
Sbjct: 131 RAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQM 174

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  130 bits (327), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 100/158 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+  VGK+ ++ RF  D + N Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 22  FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  SY R S   +IVYDV  ++SF     W++E+     S V+ +LVGNK DL DK
Sbjct: 82  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 141
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           R V  +  +  A    + F+ETSA    N++  F  +A
Sbjct: 142 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA 179

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  130 bits (327), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 109/158 (68%), Gaps = 1/158 (0%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQ 68
           +K+V +GD  VGK+++++RF  D+F+   ++TIG++F +K++ L++ + ++ Q+WDTAGQ
Sbjct: 8   FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           ER+R++  +Y R +  A++VYD+  + SF N  KW++E+R    S+++I+LVGNK+DL  
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKH 127
Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
            R ++  +    A++  + FIETSA    N++  F ++
Sbjct: 128 LRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQL 165

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  130 bits (327), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 98/157 (62%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +   +++YD+ + +SF     W  +++T    +  ++LVGNK D+ D+
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           R VS E G   A  L   F E SAK   N+K  F ++
Sbjct: 126 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 162

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 102/161 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  ++ V+LQ+WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +   +++YD+ + +SF     W  +++T    +  ++LVGNK D+ ++
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           R V  E+G+  A +L   F E SAK   +++  F ++  A+
Sbjct: 144 RVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           +P  A  K +++ +G + VGKTS++ RF  D F    ++T+G+DF  KT+ L  + +RLQ
Sbjct: 19  SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQ 78
Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVG 121
           +WDTAGQERF S+  +Y R +   ++VYD+  +++F +  KW++ +      D  ++LVG
Sbjct: 79  IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 138
Query: 122 NKTDLVDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALFRKI 166
           NK D    R+++ ++GE  A+++  M F E SAK  FN+  +F K+
Sbjct: 139 NKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 184

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  127 bits (320), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 101/158 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G+   GK+ ++ +F+  KF +    TIG++F SK + +  + V+LQ+WDTAGQE
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFRS+  SY R ++ A++VYD+ SR+++   T W+ + R     +++I+L GNK DL   
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           R+V+  E    A+E  +MF+ETSA  G N++  F + A
Sbjct: 131 REVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA 168

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  127 bits (318), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 103/166 (62%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           AP +    +K + +GD  VGK+ ++ +F   KF      TIG++F ++ + +  + ++LQ
Sbjct: 8   APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 67
Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVG 121
           +WDTAGQERFR++  SY R ++ A++VYD+  R ++ + + W+ + R     + +I+L+G
Sbjct: 68  IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 127
Query: 122 NKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           NK DL  +R V+ EE +  A E  ++F+E SAK G N++  F + A
Sbjct: 128 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA 173

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  127 bits (318), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 95/157 (60%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +   ++ YD+ + +SF     W  +++T    +  ++LVGNK D  D+
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDE 128
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           R VS E G   A  L   F E SAK   N+K  F ++
Sbjct: 129 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 165

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 102/171 (59%), Gaps = 5/171 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           L   K++ +G+  VGK+S++ RF  D FD    ATIG+DF  KT+ ++    +L +WDTA
Sbjct: 13  LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 72
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKTD 125
           GQERFR+L PSY R +   ++VYDV  R +F+    W+ E+ T    +D++  LVGNK D
Sbjct: 73  GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID 132
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL---PGM 173
             + R+V   EG   AR+ + +FIE SAK    ++  F ++   +   PG+
Sbjct: 133 -KENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPGL 182

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 101/158 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G+   GK+ ++ +F+  KF +    TIG++F SK + +  + V+LQ+WDTAGQE
Sbjct: 12  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFRS+  SY R ++ A++VYD+ SR+++   T W+ + R     +++I+L GNK DL   
Sbjct: 72  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 131
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           R+V+  E    A+E  +MF+ETSA  G +++  F + A
Sbjct: 132 REVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCA 169

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 93/161 (57%), Gaps = 6/161 (3%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S+   YK+V  GD +VGK+S + R   ++F     AT+G+DF  KT+ ++     LQLWD
Sbjct: 24  SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWD 83
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
           TAGQERFRS+  SY R +   +++YDV   +SFLN  +WV+ +       V I+LVGNK 
Sbjct: 84  TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKA 143
Query: 125 DLVD------KRQVSIEEGEAKARELNVMFIETSAKAGFNI 159
           D+ D      ++ V    GE  A     +F ETSAK G NI
Sbjct: 144 DIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI 184

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 102/166 (61%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           AP +    +K + +GD  VGK+ ++ +F   KF      TIG++F ++ + +  + ++LQ
Sbjct: 23  APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 82
Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVG 121
           +WDTAGQ RFR++  SY R ++ A++VYD+  R ++ + + W+ + R     + +I+L+G
Sbjct: 83  IWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 142
Query: 122 NKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           NK DL  +R V+ EE +  A E  ++F+E SAK G N++  F + A
Sbjct: 143 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA 188

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 101/162 (62%), Gaps = 6/162 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS----DVIIVLVGNKTDL 126
           F+SL  ++ R +   V+V+DV +  +F     W +E   +       +   V++GNK DL
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
Query: 127 VDKRQVSIEEGEAKA-RELNVMFIETSAKAGFNIKALFRKIA 167
            + RQV+ +  +A    + N+ + ETSAK   N++  F+ IA
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 100/158 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G+   GK+ ++ +F+  KF +    TIG++F SK + +  + V+LQ+WDTAG E
Sbjct: 9   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFRS+  SY R ++ A++VYD+ SR+++   T W+ + R     +++I+L GNK DL   
Sbjct: 69  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 128
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           R+V+  E    A+E  +MF+ETSA  G +++  F + A
Sbjct: 129 REVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCA 166

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 103/170 (60%), Gaps = 6/170 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS----DVIIVLVGNKTDL 126
           F+SL  ++ R +   V+V+DV +  +F     W +E   +       +   V++GNK DL
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
Query: 127 VDKRQVSIEEGEAKA-RELNVMFIETSAKAGFNIKALFRKIAAALPGMET 175
            + RQV+ +  +A    + N+ + ETSAK   N++  F+ IA      ET
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET 178

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  121 bits (303), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 102/170 (60%), Gaps = 6/170 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS----DVIIVLVGNKTDL 126
           F+SL  ++ R +   V+V+DV +  +F     W +E   +       +   V++GNK D 
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDF 129
Query: 127 VDKRQVSIEEGEAKA-RELNVMFIETSAKAGFNIKALFRKIAAALPGMET 175
            + RQV+ +  +A    + N+ + ETSAK   N++  F+ IA      ET
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET 178

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  120 bits (302), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +G+ +VGK+S+I R+    F   Y+ TIG+DFL + + + D  VRL LWDTAGQE 
Sbjct: 7   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
           F ++  +Y R +   V+V+    R+SF   + W E+V  E G D+   LV NK DL+D  
Sbjct: 67  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDS 125
Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
            +  EE E  A+ L + F  TS K   N+  +F+ +A
Sbjct: 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 162

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 102/170 (60%), Gaps = 6/170 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V +Q+WDTAG ER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLER 69
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS----DVIIVLVGNKTDL 126
           F+SL  ++ R +   V+V+DV +  +F     W +E   +       +   V++GNK DL
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
Query: 127 VDKRQVSIEEGEAKA-RELNVMFIETSAKAGFNIKALFRKIAAALPGMET 175
            + RQV+ +  +A    + N+ + ETSAK   N++  F+ IA      ET
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET 178

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 100/157 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT++++RF  ++F +  + TIG++F ++T+ L    V+ Q+WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A++V+D+   Q++    +W++E+     + ++++LVGNK+DL   
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           R+V  EE    A    ++F+ETSA    N++  F  +
Sbjct: 146 REVPTEEARMFAENNGLLFLETSALDSTNVELAFETV 182

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 100/157 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT++++RF  ++F +  + TIG++F ++T+ L    V+ Q+WDTAG E
Sbjct: 11  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A++V+D+   Q++    +W++E+     + ++++LVGNK+DL   
Sbjct: 71  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 130
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           R+V  EE    A    ++F+ETSA    N++  F  +
Sbjct: 131 REVPTEEARMFAENNGLLFLETSALDSTNVELAFETV 167

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  118 bits (295), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 102/172 (59%), Gaps = 9/172 (5%)
Query: 2   APVSALAK---YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTV 58
            P+ +  K   +K++ LGD  VGK+S++ R++ +KFD+    TIG++FL+K + ++   V
Sbjct: 1   GPLGSAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFV 60
Query: 59  RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEE----VRTERGSD 114
            +Q+WDTAGQERFRSL   + R S   ++ + V   QSF N + W +E       +    
Sbjct: 61  TMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPES 120
Query: 115 VIIVLVGNKTDLVDKRQVSIEEGEAKAREL-NVMFIETSAKAGFNIKALFRK 165
              V++GNKTD + +RQVS EE +A  ++  +  + ETSAK   N+ A F +
Sbjct: 121 FPFVILGNKTD-IKERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEE 171

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  117 bits (292), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 96/161 (59%), Gaps = 11/161 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +    +           V L
Sbjct: 27  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86
Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVL 119
           QLWDTAGQERFRSL  ++ RD+   ++++D+ S+QSFLN   W+ +++      +  IVL
Sbjct: 87  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 146
Query: 120 VGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160
           +GNK DL D+R+V+  +    A +  + + ETSA  G N++
Sbjct: 147 IGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVE 187

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  117 bits (292), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 101/170 (59%), Gaps = 8/170 (4%)
Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA  S+L  +K++ LGD  VGK+S++ R++ +KFD     TIG++FL+K + ++   V +
Sbjct: 3   MAGKSSL--FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM 60
Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEE----VRTERGSDVI 116
           Q+WDTAGQERFRSL   + R S   ++ + V   QSF N + W +E       +      
Sbjct: 61  QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 120
Query: 117 IVLVGNKTDLVDKRQVSIEEGEAKAREL-NVMFIETSAKAGFNIKALFRK 165
            V++GNK D + +RQVS EE +A  R+  +  + ETSAK   N+ A F +
Sbjct: 121 FVILGNKID-ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 169

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  116 bits (291), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 101/170 (59%), Gaps = 8/170 (4%)
Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA  S+L  +K++ LGD  VGK+S++ R++ +KFD     TIG++FL+K + ++   V +
Sbjct: 1   MAGKSSL--FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM 58
Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEE----VRTERGSDVI 116
           Q+WDTAGQERFRSL   + R S   ++ + V   QSF N + W +E       +      
Sbjct: 59  QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 118
Query: 117 IVLVGNKTDLVDKRQVSIEEGEAKAREL-NVMFIETSAKAGFNIKALFRK 165
            V++GNK D + +RQVS EE +A  R+  +  + ETSAK   N+ A F +
Sbjct: 119 FVILGNKID-ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 167

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 96/161 (59%), Gaps = 11/161 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +  + +           V L
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVL 119
           QLWDTAG ERFRSL  ++ RD+   ++++D+ S+QSFLN   W+ +++      +  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160
           +GNK DL D+R+V+  +    A +  + + ETSA  G N++
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVE 173

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 96/161 (59%), Gaps = 11/161 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +  + +           V L
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVL 119
           QLWDTAG ERFRSL  ++ RD+   ++++D+ S+QSFLN   W+ +++      +  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160
           +GNK DL D+R+V+  +    A +  + + ETSA  G N++
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVE 173

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  114 bits (284), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 94/161 (58%), Gaps = 11/161 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +  + +           V L
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVL 119
           QLWDTAG ERFRSL  ++ RD+   ++ +D+ S+QSFLN   W  +++      +  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160
           +GNK DL D+R+V+  +    A +  + + ETSA  G N++
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVE 173

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  114 bits (284), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 94/161 (58%), Gaps = 11/161 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +  + +           V L
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVL 119
           QLWDTAG ERFRSL  ++ RD+   ++ +D+ S+QSFLN   W  +++      +  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160
           +GNK DL D+R+V+  +    A +  + + ETSA  G N++
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVE 173

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  113 bits (283), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 93/160 (58%), Gaps = 11/160 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE----------DRTVRL 60
           K + LGD  VGKTS++ ++   KF++ +  T+GIDF  K +              + + L
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS-DVIIVL 119
           QLWDTAG ERFRSL  ++ RD+   ++++D+ + QSFLN   W+ +++    S +  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVL 132
Query: 120 VGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNI 159
            GNK+DL D+R V  EE    A +  + + ETSA  G NI
Sbjct: 133 CGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNI 172

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 97/166 (58%), Gaps = 5/166 (3%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT +  RF   +F +  +ATIG+DF  + + ++   +++QLWDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 70  RFR-SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKTDLV 127
           RFR S++  Y R+    V VYD+ +  SF +   W+EE +     +D+  +LVGNK DL 
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140
Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKA---GFNIKALFRKIAAAL 170
              QV  +  +  A   ++   ETSAK      +++A+F  +A  L
Sbjct: 141 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 95/166 (57%), Gaps = 5/166 (3%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT +  RF   +F +  +ATIG+DF  + + ++   +++QLWDTAGQE
Sbjct: 30  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 70  RFR-SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKTDLV 127
           RFR S++  Y R+    V VYD  +  SF +   W+EE +     +D+  +LVGNK DL 
Sbjct: 90  RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 149
Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKA---GFNIKALFRKIAAAL 170
              QV  +  +  A   +    ETSAK      +++A+F  +A  L
Sbjct: 150 SAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 79/115 (68%)
Query: 12  LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71
           L+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQERF
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 72  RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
           R++  SY R +   ++VYDV  ++SF N  +W++E+      +V  +LVGNK DL
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 96/164 (58%), Gaps = 7/164 (4%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQE 69
           K++ LGD  VGKTS++ R++ DK+   Y+ATIG DFL+K + ++ D+   +Q+WDTAGQE
Sbjct: 10  KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEE----VRTERGSDVIIVLVGNKTD 125
           RF+SL  ++ R +   V+VYDV +  SF N   W +E               V++GNK D
Sbjct: 70  RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 129
Query: 126 LVD-KRQVSIEEGEAKAREL-NVMFIETSAKAGFNIKALFRKIA 167
             + K+ VS +  +  A+ L ++    TSAK   N+   F +IA
Sbjct: 130 AEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIA 173

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 98/160 (61%), Gaps = 2/160 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           ++LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + D
Sbjct: 10  NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 68
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNK 123
           TAGQE + ++  +Y R     + V+ +   +SF  T  + E++ R +   +V  +LVGNK
Sbjct: 69  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 128
Query: 124 TDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           +DL DKRQVS+EE + +A + NV ++ETSAK   N+  +F
Sbjct: 129 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 168

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score =  107 bits (268), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 98/160 (61%), Gaps = 2/160 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           ++LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + D
Sbjct: 14  NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 72
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNK 123
           TAGQE + ++  +Y R     + V+ +   +SF  T  + E++ R +   +V  +LVGNK
Sbjct: 73  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 132
Query: 124 TDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           +DL DKRQVS+EE + +A + NV ++ETSAK   N+  +F
Sbjct: 133 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 172

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score =  107 bits (268), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 98/160 (61%), Gaps = 2/160 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           ++LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + D
Sbjct: 2   NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 60
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNK 123
           TAGQE + ++  +Y R     + V+ +   +SF  T  + E++ R +   +V  +LVGNK
Sbjct: 61  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 120
Query: 124 TDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           +DL DKRQVS+EE + +A + NV ++ETSAK   N+  +F
Sbjct: 121 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 160

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  107 bits (268), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 94/160 (58%), Gaps = 6/160 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGK+S++ R++ +KFD+    TIG++FL++ + ++ R V LQ+WDTAGQER
Sbjct: 9   KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQER 68
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEE----VRTERGSDVIIVLVGNKTDL 126
           F+SL   + R +   ++ + V  RQSF N   W +E       +       V++GNK D 
Sbjct: 69  FKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDK 128
Query: 127 VDKRQVSIEEGEAKAREL-NVMFIETSAKAGFNIKALFRK 165
            D RQV+ EE +    E  +  ++ETSAK   N+   F +
Sbjct: 129 ED-RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEE 167

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score =  106 bits (265), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           +LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + DT
Sbjct: 1   SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDT 59
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++  +Y R     + V+ +   +SF  T  + E++ R +   +V  +LVGNK+
Sbjct: 60  AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 119
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           DL DKRQVS+EE + +A + NV ++ETSAK   N+  +F
Sbjct: 120 DLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVF 158

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 99/197 (50%), Gaps = 40/197 (20%)
Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------- 56
           + YK V LG+ SVGK+SI+ R   D F      TIG  F +  + L D            
Sbjct: 6   SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKN 65
Query: 57  --------------------------TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90
                                      ++  +WDTAGQER+ S++P Y R ++ A++V+D
Sbjct: 66  NNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD 125
Query: 91  VASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIE 150
           +++  +      WV +++    S+ II+LV NK D  +K QV I E +  A++ N++FI+
Sbjct: 126 ISNSNTLDRAKTWVNQLKI--SSNYIIILVANKIDK-NKFQVDILEVQKYAQDNNLLFIQ 182
Query: 151 TSAKAGFNIKALFRKIA 167
           TSAK G NIK +F  +A
Sbjct: 183 TSAKTGTNIKNIFYMLA 199

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 97/160 (60%), Gaps = 2/160 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           ++LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + D
Sbjct: 2   NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 60
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNK 123
           TAG E + ++  +Y R     + V+ +   +SF  T  + E++ R +   +V  +LVGNK
Sbjct: 61  TAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 120
Query: 124 TDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           +DL DKRQVS+EE + +A + NV ++ETSAK   N+  +F
Sbjct: 121 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 160

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 98/161 (60%), Gaps = 3/161 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S+LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + D
Sbjct: 3   SSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 61
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVI-IVLVGN 122
           TAG E + ++  +Y R     ++V+ +   +SF  T ++ E++ R +   D I +++VGN
Sbjct: 62  TAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGN 121
Query: 123 KTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           K+DL ++RQV +EE  +KA E  V ++ETSAK   N+  +F
Sbjct: 122 KSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVF 162

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 96/159 (60%), Gaps = 3/159 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + DTA
Sbjct: 1   LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVI-IVLVGNKT 124
           G E + ++  +Y R     ++V+ +   +SF  T ++ E++ R +   D I +++VGNK+
Sbjct: 60  GLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKS 119
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           DL ++RQV +EE  +KA E  V ++ETSAK   N+  +F
Sbjct: 120 DLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVF 158

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 92/173 (53%), Gaps = 11/173 (6%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           E+F  L   Y   +  A+I++DV SR ++ N   W  ++      ++ IVL GNK D+ D
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 128
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETLS 177
           ++       +AK+    R+ N+ + + SAK+ +N +  F  +A  L G   L 
Sbjct: 129 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 93/174 (53%), Gaps = 4/174 (2%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLW 63
           S + + K+V LGD + GKTS+ T F  + F   Y+ TIG+DF  + + L  +  V LQ+W
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKW---VEEVRTERGSDVIIVLV 120
           D  GQ     ++  YI  +   ++VYD+ + QSF N   W   V++V  E  +  ++ LV
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121
Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGME 174
           GNK DL   R +  E+     +E        SAK G ++   F+K+AA + G++
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK 175

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 15  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           E+F  L   Y   +  A+I++DV SR ++ N   W  ++      ++ IVL GNK D+ D
Sbjct: 75  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 133
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
           ++       +AK+    R+ N+ + + SAK+ +N +  F  +A  L G   L
Sbjct: 134 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           E+F  L   Y   +  A+I++DV SR ++ N   W  ++      ++ IVL GNK D+ D
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 128
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
           ++       +AK+    R+ N+ + + SAK+ +N +  F  +A  L G   L
Sbjct: 129 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 92/173 (53%), Gaps = 11/173 (6%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           E+F  L   Y   +  A+I++DV SR ++ N   W  ++      ++ IVL GNK D+ D
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 128
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETLS 177
           ++       +AK+    R+ N+ + + SAK+ +N +  F  +A  L G   L 
Sbjct: 129 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 92/173 (53%), Gaps = 11/173 (6%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           E+F  L   Y   +  A+I++DV SR ++ N   W  ++      ++ IVL GNK D+ D
Sbjct: 70  EKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 128
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETLS 177
           ++       +AK+    R+ N+ + + SAK+ +N +  F  +A  L G   L 
Sbjct: 129 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 3   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           E+F  L   Y   +  A+I++DV SR ++ N   W  ++      ++ IVL GNK D+ D
Sbjct: 63  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 121
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
           ++       +AK+    R+ N+ + + SAK+ +N +  F  +A  L G   L
Sbjct: 122 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 167

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 91/173 (52%), Gaps = 11/173 (6%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           E+F  L   Y   +  A+I +DV SR ++ N   W  ++      ++ IVL GNK D+ D
Sbjct: 70  EKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 128
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETLS 177
           ++       +AK+    R+ N+ + + SAK+ +N +  F  +A  L G   L 
Sbjct: 129 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 92/173 (53%), Gaps = 11/173 (6%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           E++  L   Y   +  A+I++DV SR ++ N   W  ++      ++ IVL GNK D+ D
Sbjct: 70  EKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 128
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETLS 177
           ++       +AK+    R+ N+ + + SAK+ +N +  F  +A  L G   L 
Sbjct: 129 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 91/173 (52%), Gaps = 11/173 (6%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y  T+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           E+F  L   Y   +  A+I++DV SR ++ N   W  ++      ++ IVL GNK D+ D
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 128
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETLS 177
           ++       +AK+    R+ N+ + + SAK+ +N +  F  +A  L G   L 
Sbjct: 129 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 11/172 (6%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y  T+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           E+F  L   Y   +  A+I++DV SR ++ N   W  ++      ++ IVL GNK D+ D
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 128
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
           ++       +AK+    R+ N+ + + SAK+ +N +  F  +A  L G   L
Sbjct: 129 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y ATIG++    + Y     ++  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +F  L   Y  ++  A+I++DV SR ++ N   W  ++      ++ IVL GNK D V +
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVD-VKE 130
Query: 130 RQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
           R+V     +AK     R+ N+ + + SAK+ +N +  F  +A  L G   L
Sbjct: 131 RKV-----KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 176

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 3/167 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y ATIG++    + Y     ++  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +F  L   Y  ++  A+I++DV SR ++ N   W  ++      ++ IVL GNK D V +
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVD-VKE 123
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
           R+V  +      R+ N+ + + SAK+ +N +  F  +A  L G   L
Sbjct: 124 RKVKAKT-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 169

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 3/167 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y ATIG++    + Y     ++  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +F  L   Y  ++  A+I++DV SR ++ N   W  ++      ++ IVL GNK D V +
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVD-VKE 122
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
           R+V  +      R+ N+ + + SAK+ +N +  F  +A  L G   L
Sbjct: 123 RKVKAKT-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 168

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 11/172 (6%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAG 
Sbjct: 12  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 71
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           E+F  L   Y   +  A+I++DV SR ++ N   W  ++      ++ IVL GNK D+ D
Sbjct: 72  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 130
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
           ++       +AK+    R+ N+ + + SAK+ +N +  F  +A  L G   L
Sbjct: 131 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 176

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 11/172 (6%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAG 
Sbjct: 6   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 65
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           E+F  L   Y   +  A+I++DV SR ++ N   W  ++      ++ IVL GNK D+ D
Sbjct: 66  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 124
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
           ++       +AK+    R+ N+ + + SAK+ +N +  F  +A  L G   L
Sbjct: 125 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 170

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 11/172 (6%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAG 
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 69
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           E+F  L   Y   +  A+I++DV SR ++ N   W  ++      ++ IVL GNK D+ D
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 128
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
           ++       +AK+    R+ N+ + + SAK+ +N +  F  +A  L G   L
Sbjct: 129 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 11/172 (6%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  + +  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 15  QFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           E+F  L   Y   +  A+I++DV SR ++ N   W  ++      ++ IVL GNK D+ D
Sbjct: 75  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 133
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
           ++       +AK+    R+ N+ + + SAK+ +N +  F  +A  L G   L
Sbjct: 134 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 3/169 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAG 67
           YK+  +GD  VGKT+ I R +  +F+  Y AT+G        +L+D+   ++  +WDTAG
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGA-VNHPVTFLDDQGNVIKFNVWDTAG 70
Query: 68  QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV 127
           QE+   L   Y   +S A++ +DV SR +  N  +WV+E +   G++  IV+  NK D+ 
Sbjct: 71  QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130
Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
           +++++S +      +  N  + E SAK   N    F  +A    G   L
Sbjct: 131 NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDL 179

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S   KY+LV +G   VGK+++  +F+   F   Y  TI  D  +K   ++DR  RL + D
Sbjct: 1   SMQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILD 59
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNK 123
           TAGQE F ++   Y+R     ++V+ V  R SF    K+  ++ R +   +  ++L+GNK
Sbjct: 60  TAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNK 119
Query: 124 TDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
            DL  +RQV+ EEG+  AR+L V ++E SAK   N+   F ++
Sbjct: 120 ADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL 162

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 93/159 (58%), Gaps = 3/159 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV LG   VGK+++  +F+   F + Y  TI  D   K + ++ +   L++ DTA
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIE-DSYRKQVEVDCQQCMLEILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           G E+F ++   Y+++     +VY + ++ +F +     E++ R +   DV ++LVGNK D
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARE-LNVMFIETSAKAGFNIKALF 163
           L D+R V  E+G+  AR+  N  F+E+SAK+  N+  +F
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTA
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           G E+F ++   Y+++     +VY + ++ +F +     E++ R +   DV ++LVGNK D
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARE-LNVMFIETSAKAGFNIKALF 163
           L D+R V  E+G+  AR+  N  F+E+SAK+  N+  +F
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 14/165 (8%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++  TV L LWDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGNTVNLGLWDTAGQED 66
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P   R + V ++ + + S+ S+ N   KW+ E+R      V I+LVG K DL D 
Sbjct: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDD 125
Query: 130 RQVSIEEGEA------KAREL-----NVMFIETSAKAGFNIKALF 163
           +Q  I+   A      +  EL     + ++IE S+K   N+KA+F
Sbjct: 126 KQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTA
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           G E+F ++   Y+++     +VY + ++ +F +     E++ R +   DV ++LVGNK D
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKAREL-NVMFIETSAKAGFNIKALF 163
           L D+R V  E+G+  AR+  N  F+E+SAK+  N+  +F
Sbjct: 120 LEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++ +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DT
Sbjct: 2   SMREYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDT 60
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKT 124
           AG E+F ++   Y+++     +VY + ++ +F +     E++ R +   DV ++LVGNK 
Sbjct: 61  AGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKC 120
Query: 125 DLVDKRQVSIEEGEAKAREL-NVMFIETSAKAGFNIKALF 163
           DL D+R V  E+G+  AR+  N  F+E+SAK+  N+  +F
Sbjct: 121 DLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 14/165 (8%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + +   TV L LWDTAGQE 
Sbjct: 10  KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGATVNLGLWDTAGQED 68
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P   R + V ++ + + S+ S+ N + KW+ E++      V IVLVG K DL D 
Sbjct: 69  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTKLDLRDD 127
Query: 130 RQVSIEEGEA------KARELNVM-----FIETSAKAGFNIKALF 163
           +Q  I+   A      +  EL  +     +IE S+K+  N+K +F
Sbjct: 128 KQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 92/172 (53%), Gaps = 19/172 (11%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRF--MYDKFD--------NTYQATIGIDFLSKTMYLED 55
            +  Y++V +G+Q VGK+++   F  ++D  D        +TY+ T+ +D  S T+ L  
Sbjct: 3   GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL-- 60
Query: 56  RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS-D 114
               L +W+  G+  +  L    ++     +IVY +  R SF   ++   ++R  R + D
Sbjct: 61  ----LDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED 114
Query: 115 VIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           + I+LVGNK+DLV  R+VS+ EG A A   +  FIETSA    N+K LF  I
Sbjct: 115 IPIILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGI 166

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 4/161 (2%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++A Y++V LGD  VGKTS+ + F   K +      +G D   +T+ ++     L + DT
Sbjct: 1   SMALYRVVLLGDPGVGKTSLASLFA-GKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDT 59
Query: 66  AGQERFRSLIP--SYIRDSSVAVIVYDVASRQSFLNTTKW-VEEVRTERGSDVIIVLVGN 122
              E+        S ++  S  VIVY +A R SF + ++  ++  RT +   V I+LVGN
Sbjct: 60  WEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGN 119
Query: 123 KTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           K DL   R+VS+EEG A A   +  FIETSA    N+  LF
Sbjct: 120 KADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 19/168 (11%)
Query: 10  YKLVFLGDQSVGKTSIITRF--MYDKFD--------NTYQATIGIDFLSKTMYLEDRTVR 59
           Y++V +G+Q VGK+++   F  ++D  D        +TY+ T+ +D  S T+ L      
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL------ 60
Query: 60  LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS-DVIIV 118
           L +W+  G+  +  L    ++     +IVY +  R SF   ++   ++R  R + D+ I+
Sbjct: 61  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 119 LVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           LVGNK+DLV  R+VS+ EG A A   +  FIETSA    N+K LF  I
Sbjct: 119 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 166

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 19/168 (11%)
Query: 10  YKLVFLGDQSVGKTSIITRF--MYDKFD--------NTYQATIGIDFLSKTMYLEDRTVR 59
           Y++V +G+Q VGK+++   F  ++D  D        +TY+ T+ +D  S T+ L      
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL------ 91
Query: 60  LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS-DVIIV 118
           L +W+  G+  +  L    ++     +IVY +  R SF   ++   ++R  R + D+ I+
Sbjct: 92  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 149
Query: 119 LVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           LVGNK+DLV  R+VS+ EG A A   +  FIETSA    N+K LF  I
Sbjct: 150 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 197

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 92/172 (53%), Gaps = 19/172 (11%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRF--MYDKFD--------NTYQATIGIDFLSKTMYLED 55
            +  Y++V +G+Q VGK+++   F  ++D  D        +TY+ T+ +D  S T+ L  
Sbjct: 3   GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL-- 60
Query: 56  RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS-D 114
               L +W+  G+  +  L    ++     +IVY +  R SF   ++   ++R  R + D
Sbjct: 61  ----LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED 114
Query: 115 VIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           + I+LVGNK+DLV  R+VS+ EG A A   +  FIETSA    N+K LF  I
Sbjct: 115 IPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGI 166

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 94/185 (50%), Gaps = 19/185 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKTS++  +  + +   Y  T   D  S  + ++ R VRLQL DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT-AFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           F  L P    ++ + ++ + V S  SF N + KWV E+R        I+LVG ++DL + 
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRC-HCPKAPIILVGTQSDLRED 139
Query: 130 RQVSIEEGEAKARELN-------------VMFIETSAKAGFNIKALFRKIAAALPGMETL 176
            +V IE  + K + +                +IE SA    N+K +F   AA + G++  
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFD--AAIVAGIQ-Y 196
Query: 177 SSTKQ 181
           S T+Q
Sbjct: 197 SDTQQ 201

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 11  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQED 69
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P   R + + V+ + + S+ S+ N   KW+ E+R     +V IVLVG K DL D 
Sbjct: 70  YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLRDD 128
Query: 130 RQ--------VSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +         ++  +GE   +++    +IE S+K   N+KA+F
Sbjct: 129 KGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 16/171 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD   GKTS++  F    F  +Y  T+   ++   + ++ + V L +WDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTD---- 125
           +  L P +  D+SV ++ +DV S  SF N   +W  EV       V I++VG KTD    
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRKD 153
Query: 126 --LVDK------RQVSIEEGEAKARELN-VMFIETSAKAGFNIKALFRKIA 167
             LV+K        V+   G+  AR +  V ++E SA+   N+ A+F++ A
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++   G   VGK+S++ RF+   F  +Y  T+  D   + +  +     LQ+ DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQITDTTGSH 62
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLV 127
           +F ++    I      ++VY + SRQS        E++   +G    + I+LVGNK D  
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
             R+V   E EA AR     F+ETSAK   N+K LF+++
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 14/165 (8%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++  TV L LWDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P   R + V ++ + + S+ S+ N   KW+ E++      + IVLVG K DL D 
Sbjct: 67  YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELK-HYAPGIPIVLVGTKLDLRDD 125
Query: 130 RQ----------VSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +Q          ++  +GE   + +  V ++E S+K   N+KA+F
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V++I + + S  SF N   KW  EVR     +  I+LVG K DL D 
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 124
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +             ++  +G A A+E+  V ++E SA     +K +F
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 67
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V++I + + S  SF N   KW  EVR     +  I+LVG K DL D 
Sbjct: 68  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 126
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +             ++  +G A A+E+  V ++E SA     +K +F
Sbjct: 127 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V++I + + S  SF N   KW  EVR     +  I+LVG K DL D 
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +             ++  +G A A+E+  V ++E SA     +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V++I + + S  SF N   KW  EVR     +  I+LVG K DL D 
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +             ++  +G A A+E+  V ++E SA     +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
            + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT
Sbjct: 1   GMTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 59
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++   Y+R     + V+ + + +SF +   + E++ R +   DV +VLVGNK+
Sbjct: 60  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKS 119
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAK 154
           DL   R V  ++ +  AR   + FIETSAK
Sbjct: 120 DLP-SRTVDTKQAQDLARSYGIPFIETSAK 148

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 87/173 (50%), Gaps = 16/173 (9%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           SA  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWD
Sbjct: 5   SAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWD 63
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK
Sbjct: 64  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNK 122
Query: 124 TDL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
            DL            + +  V  EEG   A  +    ++E SAK    ++ +F
Sbjct: 123 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 8/164 (4%)
Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           A+ KL   G   VGK++++ RF+  +F   Y  T+   +  +   ++D  V +++ DTAG
Sbjct: 27  AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAG 85
Query: 68  QERFRSLIPSYIRDSSVAVIVYDVASRQSF---LNTTKWVEEVRTERGSDVIIVLVGNKT 124
           QE        ++R     V+VYD+  R SF   L     ++E++  +  +V ++LVGNK 
Sbjct: 86  QEDTIQR-EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPK--NVTLILVGNKA 142
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAG-FNIKALFRKIA 167
           DL   RQVS EEGE  A EL   F E SA  G  NI  +F ++ 
Sbjct: 143 DLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELC 186

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 16/164 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG +SVGK+S+  +F+  +F ++Y  TI   F +K + +  +   LQL DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS--------DVIIVLVGN 122
           +     +Y  D +  ++VY V S +SF       E ++   G          + I+LVGN
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSF-------EVIKVIHGKLLDMVGKVQIPIMLVGN 119
Query: 123 KTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           K DL  +R +S EEG+A A   N  F+E+SAK       +FR+I
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 16/164 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG +SVGK+S+  +F+  +F ++Y  TI   F +K + +  +   LQL DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS--------DVIIVLVGN 122
           +     +Y  D +  ++VY V S +SF       E ++   G          + I+LVGN
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSF-------EVIKVIHGKLLDMVGKVQIPIMLVGN 119
Query: 123 KTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           K DL  +R +S EEG+A A   N  F+E+SAK       +FR+I
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 16/164 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG +SVGK+S+  +F+  +F ++Y  TI   F +K + +  +   LQL DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS--------DVIIVLVGN 122
           +     +Y  D +  ++VY V S +SF       E ++   G          + I+LVGN
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSF-------EVIKVIHGKLLDMVGKVQIPIMLVGN 114
Query: 123 KTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           K DL  +R +S EEG+A A   N  F+E+SAK       +FR+I
Sbjct: 115 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 158

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + S  SF N   KW  EVR     +  I+LVG K DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +             ++  +G A A+E+  V ++E SA     +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + S  SF N   KW  EVR     +  I+LVG K DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +             ++  +G A A+E+  V ++E SA     +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 82/147 (55%), Gaps = 3/147 (2%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTAGQ
Sbjct: 4   EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQ 62
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTDLV 127
           E + ++   Y+R     + V+ + + +SF +   + E++ R +   DV +VLVGNK DL 
Sbjct: 63  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL- 121
Query: 128 DKRQVSIEEGEAKARELNVMFIETSAK 154
             R V  ++ +  AR   + FIETSAK
Sbjct: 122 PSRTVDTKQAQDLARSYGIPFIETSAK 148

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 16/176 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + S  SF N   KW  EVR        I+LVG K DL D 
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDD 123
Query: 130 R------------QVSIEEGEAKAREL-NVMFIETSAKAGFNIKALFRKIAAALPG 172
           +             ++  +G A ARE+ +V ++E SA     +K +F +   A+ G
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLG 179

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 16/176 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + S  SF N   KW  EVR        I+LVG K DL D 
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDD 123
Query: 130 R------------QVSIEEGEAKAREL-NVMFIETSAKAGFNIKALFRKIAAALPG 172
           +             ++  +G A ARE+ +V ++E SA     +K +F +   A+ G
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLG 179

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G + VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + S  SF N   KW  EVR        I+LVG K DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKAREL-NVMFIETSAKAGFNIKALF 163
           +             ++  +G A ARE+ +V ++E SA     +K +F
Sbjct: 123 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + S  SF N   KW  EVR     +  I+LVG K DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +             ++  +G A A+E+  V ++E SA     +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + S  SF N   KW  EVR     +  I+LVG K DL D 
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +             ++  +G A A+E+  V ++E SA     +K +F
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + S  SF N   KW  EVR     +  I+LVG K DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +             ++  +G A A+E+  V ++E SA     +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 24  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 82
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + S  SF N   KW  EVR     +  I+LVG K DL D 
Sbjct: 83  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 141
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +             ++  +G A A+E+  V ++E SA     +K +F
Sbjct: 142 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 4   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 62
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK 
Sbjct: 63  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 121
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
           DL            + +  V  EEG   A  +    ++E SAK    ++ +F
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 4   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 62
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK 
Sbjct: 63  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 121
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
           DL            + +  V  EEG   A  +    ++E SAK    ++ +F
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 2   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 60
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK 
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
           DL            + +  V  EEG   A  +    ++E SAK    ++ +F
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + S  SF N   KW  EVR     +  I+LVG K DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +             ++  +G A A+E+  V ++E SA     +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-GRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 5   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 63
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK 
Sbjct: 64  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 122
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
           DL            + +  V  EEG   A  +    ++E SAK    ++ +F
Sbjct: 123 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + S  SF N   KW  EVR     +  I+LVG K DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +             ++  +G A A+E+  V ++E SA     +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 73
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + S  SF N   KW  EVR     +  I+LVG K DL D 
Sbjct: 74  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 132
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +             ++  +G A A+E+  V ++E SA     +K +F
Sbjct: 133 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 3   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 61
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK 
Sbjct: 62  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 120
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
           DL            + +  V  EEG   A  +    ++E SAK    ++ +F
Sbjct: 121 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 22  AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDT 80
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK 
Sbjct: 81  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 139
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
           DL            + +  V  EEG   A  ++   ++E SAK    ++ +F
Sbjct: 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 4   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 62
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK 
Sbjct: 63  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 121
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
           DL            + +  V  EEG   A  +    ++E SAK    ++ +F
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 79.7 bits (195), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 16/173 (9%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S +   K V +GD +VGK  ++  +  + F   Y  T+  D  S  + ++ + V L LWD
Sbjct: 6   SGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWD 64
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P     + V +I + + S  SF N   KW  EVR     +  I+LVG K
Sbjct: 65  TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTK 123
Query: 124 TDLVDKR------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
            DL D +             ++  +G A A+E+  V ++E SA     +K +F
Sbjct: 124 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 22  AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDT 80
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK 
Sbjct: 81  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKK 139
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
           DL            + +  V  EEG   A  ++   ++E SAK    ++ +F
Sbjct: 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 3   AAIRKKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 61
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK 
Sbjct: 62  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 120
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
           DL            + +  V  EEG   A  +    ++E SAK    ++ +F
Sbjct: 121 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 6   ALAKY-KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
            L +Y K+V LG + VGKTS+  +F+  +F   Y  T+   + SK + L      L L D
Sbjct: 20  PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVD 78
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNK 123
           TAGQ+ +  L  S+I      V+VY V S  SF       +++    G + V +VLVGNK
Sbjct: 79  TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNK 138
Query: 124 TDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
            DL  +R+V   EG+  A      F+E+SA+     + +F K+
Sbjct: 139 ADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKV 181

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + S  S+ N   KW  EVR    S  II LVG K DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +             ++  +G A A+E++ V ++E SA     +K +F
Sbjct: 123 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 169

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 11  KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQED 69
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + S  S+ N   KW  EVR    S  II LVG K DL D 
Sbjct: 70  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 128
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +             ++  +G A A+E++ V ++E SA     +K +F
Sbjct: 129 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 12  KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQED 70
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + S  S+ N   KW  EVR    S  II LVG K DL D 
Sbjct: 71  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 129
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +             ++  +G A A+E++ V ++E SA     +K +F
Sbjct: 130 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +     Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + S  SF N   KW  EVR     +  I+LVG K DL D 
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +             ++  +G A A+E+  V ++E SA     +K +F
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + S  SF N   KW  EVR     +  I+LVG K DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +             ++  +G A A+E+  V ++E SA     +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + S  SF N   KW  EVR     +  I+LVG K DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +             ++  +G A A+E+  V ++E SA     +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 66
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + S  SF N   KW  EVR     +  I+LVG K DL D 
Sbjct: 67  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 125
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +             ++  +G A A+E+  V ++E SA     +K +F
Sbjct: 126 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 87/164 (53%), Gaps = 16/164 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG +SVGK+S+  +F+  +F ++   TI   F +K + +  +   LQL DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS--------DVIIVLVGN 122
           +     +Y  D +  ++VY V S +SF       E ++   G          + I+LVGN
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSF-------EVIKVIHGKLLDMVGKVQIPIMLVGN 117
Query: 123 KTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           K DL  +R +S EEG+A A   N  F+E+SAK       +FR+I
Sbjct: 118 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 161

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++ + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 22  SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDT 80
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P    D+ V ++ + V S  S  N   KWV EV+     +V I+LV NK 
Sbjct: 81  AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKK 139
Query: 125 DLVDKRQVSIE------------EGEAKARELNVM-FIETSAKAGFNIKALF 163
           DL     V  E            +G A A  +    ++E SAK    ++ +F
Sbjct: 140 DLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + S  SF N   KW  EVR     +  I+LVG K DL D 
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +             ++  +G A A+E+  V ++E SA     +K +F
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 2   AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 60
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK 
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
           DL            + +  V  EEG   A  +    ++E SAK    ++ +F
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 2   AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 60
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK 
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
           DL            + +  V  EEG   A  +    ++E SAK    ++ +F
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 91/190 (47%), Gaps = 17/190 (8%)
Query: 4   VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
           +SA+   K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+
Sbjct: 5   ISAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLF 63
Query: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGN 122
           DTAGQE +  L P     + V ++ + V S  SF N   KWV E+ T        +LVG 
Sbjct: 64  DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGT 122
Query: 123 KTDLVD------------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAA 168
           + DL D            ++ ++ E  E  AR+L  V ++E SA     +K +F   I A
Sbjct: 123 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILA 182
Query: 169 ALPGMETLSS 178
           AL   E   S
Sbjct: 183 ALEPPEPKKS 192

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 3/164 (1%)
Query: 4   VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
           VS  + YK++ LG   VGK+++    ++   ++  +A        +++ ++     L ++
Sbjct: 2   VSDESVYKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVY 59
Query: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGN 122
           D   Q+  R L    +      VIVY V  + SF   ++   ++R  R +D V I+LVGN
Sbjct: 60  DIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGN 119
Query: 123 KTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           K+DLV  R+VS++EG A A   +  FIETSA    N++ALF  +
Sbjct: 120 KSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 163

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 2   AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 60
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK 
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
           DL            + +  V  EEG   A  +    ++E SAK    ++ +F
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 2   AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDT 60
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK 
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
           DL            + +  V  EEG   A  ++   ++E SAK    ++ +F
Sbjct: 120 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 3/158 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK++ LG   VGK+++    ++   ++  +A        +++ ++     L ++D   Q+
Sbjct: 3   YKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 60
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGNKTDLVD 128
             R L    +      VIVY V  + SF   ++   ++R  R +D V I+LVGNK+DLV 
Sbjct: 61  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120
Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
            R+VS++EG A A   +  FIETSA    N++ALF  +
Sbjct: 121 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 158

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 3/158 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK++ LG   VGK+++    ++   ++  +A        +++ ++     L ++D   Q+
Sbjct: 8   YKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 65
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGNKTDLVD 128
             R L    +      VIVY V  + SF   ++   ++R  R +D V I+LVGNK+DLV 
Sbjct: 66  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 125
Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
            R+VS++EG A A   +  FIETSA    N++ALF  +
Sbjct: 126 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 163

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDTAGQ
Sbjct: 3   RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQ 61
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDL- 126
           E +  L P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK DL 
Sbjct: 62  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 120
Query: 127 -----------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
                      + +  V  EEG   A  +    ++E SAK    ++ +F
Sbjct: 121 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDTAGQ
Sbjct: 3   RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQ 61
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDL- 126
           E +  L P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK DL 
Sbjct: 62  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 120
Query: 127 -----------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
                      + +  V  EEG   A  +    ++E SAK    ++ +F
Sbjct: 121 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++      +F   Y  T+  ++++  + ++ R V L LWDTAGQ
Sbjct: 10  RRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVAD-VEVDGRRVELALWDTAGQ 68
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLV 127
           E +  L P    DS+V +I + +    S  N   KW+ EV       V I+LVG K DL 
Sbjct: 69  EDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEV-LHFCQGVPIILVGCKVDLR 127
Query: 128 DKRQ------------VSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
           +  Q            V+ +EG++ A ++    + E SAK G+ ++ +F
Sbjct: 128 NDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD +VGKT ++  F   +    Y  T+  +F S  M  ++    L LWDTAGQE 
Sbjct: 25  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 83
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           +  L P    DS V ++ + V +R SF N +TKW  E++    +    VLVG K DL   
Sbjct: 84  YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT-AKTVLVGLKVDLRKD 142
Query: 129 -KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALFRK 165
               V+ +EG+   ++L  V +IE S+ A   +  +F K
Sbjct: 143 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 181

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD +VGKT ++  F   +    Y  T+  +F S  M  ++    L LWDTAGQE 
Sbjct: 24  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 82
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           +  L P    DS V ++ + V +R SF N +TKW  E++    +    VLVG K DL   
Sbjct: 83  YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT-AKTVLVGLKVDLRKD 141
Query: 129 -KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALFRK 165
               V+ +EG+   ++L  V +IE S+ A   +  +F K
Sbjct: 142 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 180

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 2/162 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +G   VGK+++  +F+   F + Y  TI  D  +K   ++    RL + DTAGQE
Sbjct: 10  HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQE 68
Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTDLVD 128
            F ++   Y+R     ++V+ +  RQSF    K   ++ R +   D  +VLVGNK DL  
Sbjct: 69  EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128
Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           +RQV   E  A     +V + E SAK   N+   F ++  A+
Sbjct: 129 QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 2   AAIRKKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVAD-IEVDGKQVELALWDT 60
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
           AGQE +    P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK 
Sbjct: 61  AGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DLVDKRQVSIE------------EGEAKARELNVM-FIETSAKAGFNIKALF 163
           DL +    + E            EG   A  +    ++E SAK    ++ +F
Sbjct: 120 DLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + S  SF +   KW  EVR     +  I+LVG K DL D 
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 274
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +             ++  +G A A+E+  V ++E SA     +K +F
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + S  SF +   KW  EVR     +  I+LVG K DL D 
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 274
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +             ++  +G A A+E+  V ++E SA     +K +F
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + S  SF +   KW  EVR     +  I+LVG K DL D 
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 274
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           +             ++  +G A A+E+  V ++E SA     +K +F
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 89/189 (47%), Gaps = 17/189 (8%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S +   K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+D
Sbjct: 2   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 60
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P     + V ++ + V S  SF N   KWV E+ T        +LVG +
Sbjct: 61  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQ 119
Query: 124 TDLVD------------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAA 169
            DL D            ++ ++ E  E  AR+L  V ++E SA     +K +F   I AA
Sbjct: 120 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 179
Query: 170 LPGMETLSS 178
           L   E   S
Sbjct: 180 LEPPEPKKS 188

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 89/189 (47%), Gaps = 17/189 (8%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S +   K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+D
Sbjct: 1   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 59
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P     + V ++ + V S  SF N   KWV E+ T        +LVG +
Sbjct: 60  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQ 118
Query: 124 TDLVD------------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAA 169
            DL D            ++ ++ E  E  AR+L  V ++E SA     +K +F   I AA
Sbjct: 119 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 178
Query: 170 LPGMETLSS 178
           L   E   S
Sbjct: 179 LEPPEPKKS 187

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 89/189 (47%), Gaps = 17/189 (8%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S +   K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+D
Sbjct: 2   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 60
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P     + V ++ + V S  SF N   KWV E+ T        +LVG +
Sbjct: 61  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQ 119
Query: 124 TDLVD------------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAA 169
            DL D            ++ ++ E  E  AR+L  V ++E SA     +K +F   I AA
Sbjct: 120 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 179
Query: 170 LPGMETLSS 178
           L   E   S
Sbjct: 180 LEPPEPKKS 188

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 90/166 (54%), Gaps = 3/166 (1%)
Query: 3   PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQL 62
           P   L  YKLV +GD  VGK+++  +F    F + Y  TI   +L  T  ++++   L +
Sbjct: 12  PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTE-IDNQWAILDV 70
Query: 63  WDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVG 121
            DTAGQE F ++   Y+R     +IVY V  + SF +  ++ + + R +      ++LV 
Sbjct: 71  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130
Query: 122 NKTDLVDKRQVSIEEGEAKARELNVMFIETSAK-AGFNIKALFRKI 166
           NK DL+  R+V+ ++G+  A + N+ +IETSAK    N+   F  +
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL 176

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
            P+ ++ +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L 
Sbjct: 1   GPLGSMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLD 59
Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLV 120
           + DTAGQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLV
Sbjct: 60  ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLV 119
Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           GNK DL   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 GNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 161

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
            P+ ++ +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L 
Sbjct: 1   GPLGSMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLD 59
Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLV 120
           + DTAGQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLV
Sbjct: 60  ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLV 119
Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           GNK DL   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 GNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 161

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V S  SF N   KWV E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAALPGMET 175
                      ++ ++ E  E  AR+L  V ++E SA     +K +F   I AAL   E 
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 176 LSS 178
             S
Sbjct: 183 KKS 185

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 64
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V S  SF N   KWV E+ T        +LVG + DL D 
Sbjct: 65  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 123
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAALPGMET 175
                      ++ ++ E  E  AR+L  V ++E SA     +K +F   I AAL   E 
Sbjct: 124 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 183
Query: 176 LSS 178
             S
Sbjct: 184 KKS 186

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 2/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YK+V LG   VGK+++  +F+   F   Y  TI  DF  K + ++     L++ DTA
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           G E+F S+   YI++    ++VY + ++QSF +     +++ R +R   V ++LVGNK D
Sbjct: 60  GTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           L  +R+VS  EG A A E    F+ETSAK+   +  LF +I   +
Sbjct: 120 LESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVXIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V S  SF N   KWV E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAALPGMET 175
                      ++ ++ E  E  AR+L  V ++E SA     +K +F   I AAL   E 
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 176 LSS 178
             S
Sbjct: 183 KKS 185

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  D F   Y  T+  D  + ++ +  +   L L+DTAGQE 
Sbjct: 20  KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQED 78
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           +  L P     + V +I + V +  SF N   +WV E++ E   +V  +L+G + DL D 
Sbjct: 79  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPNVPFLLIGTQIDLRDD 137
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
                      ++ + +E+G+  A+E+    ++E SA     +K +F
Sbjct: 138 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 73
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V S  SF N   KWV E+ T        +LVG + DL D 
Sbjct: 74  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 132
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAAL 170
                      ++ ++ E  E  AR+L  V ++E SA     +K +F   I AAL
Sbjct: 133 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 187

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V S  SF N   KWV E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAALPGMET 175
                      ++ ++ E  E  AR+L  V ++E SA     +K +F   I AAL   E 
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 176 LSS 178
             S
Sbjct: 183 KKS 185

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 16/169 (9%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDTAG 
Sbjct: 8   RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGL 66
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDL- 126
           E +  L P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK DL 
Sbjct: 67  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 125
Query: 127 -----------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
                      + +  V  EEG   A  +    ++E SAK    ++ +F
Sbjct: 126 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 67
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V S  SF N   KWV E+ T        +LVG + DL D 
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 126
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAAL 170
                      ++ ++ E  E  AR+L  V ++E SA     +K +F   I AAL
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 181

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 91/173 (52%), Gaps = 9/173 (5%)
Query: 4   VSALAKYKLVFLGDQSVGKTSIITRFMY--DKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           ++A  + K+  +G+ +VGK+++I+ F     KF   Y  T G++ +   + + D TV ++
Sbjct: 15  ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVE 74
Query: 62  LW--DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVE---EVRTERGSDVI 116
           L+  DTAG + ++  I  Y      A++V+DV+S +SF +   W E     R +R   + 
Sbjct: 75  LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR 134
Query: 117 IVLVGNKTDLVDKR-QVSIEEGEAKARELNVMFIETSA-KAGFNIKALFRKIA 167
            VLV NKTDL  +R QV ++  +  A    + F + SA   G +  A F  IA
Sbjct: 135 AVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIA 187

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 86/186 (46%), Gaps = 35/186 (18%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 71  FRSLIP---------SYIRD----------SSVAVIVYDVASRQSFLNT-TKWVEEVRTE 110
           +  L P         +Y +D          + V +I + + S  SF N   KW  EVR  
Sbjct: 66  YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR-H 124
Query: 111 RGSDVIIVLVGNKTDLVDKR------------QVSIEEGEAKARELN-VMFIETSAKAGF 157
              +  I+LVG K DL D +             ++  +G A A+E+  V ++E SA    
Sbjct: 125 HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 184
Query: 158 NIKALF 163
            +K +F
Sbjct: 185 GLKTVF 190

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 3/166 (1%)
Query: 3   PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQL 62
           P   L  YKLV +GD  VGK+++  +F    F   Y  TI   +L  T  ++++   L +
Sbjct: 12  PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHTE-IDNQWAILDV 70
Query: 63  WDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVG 121
            DTAGQE F ++   Y+R     +IVY V  + SF +  ++ + + R +      ++LV 
Sbjct: 71  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130
Query: 122 NKTDLVDKRQVSIEEGEAKARELNVMFIETSAK-AGFNIKALFRKI 166
           NK DL+  R+V+ ++G+  A + N+ +IETSAK    N+   F  +
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL 176

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V S  SF N   KWV E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAALPGMET 175
                      ++ ++ E  E  AR+L  V ++E SA     +K +F   I AAL   E 
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 176 LSS 178
             S
Sbjct: 183 KKS 185

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V S  SF N   KWV E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAAL 170
                      ++ ++ E  E  AR+L  V ++E SA     +K +F   I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V S  SF N   KWV E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAALPGMET 175
                      ++ ++ E  E  AR+L  V ++E SA     +K +F   I AAL   E 
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 176 LSS 178
             S
Sbjct: 183 KKS 185

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V S  SF N   KWV E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAAL 170
                      ++ ++ E  E  AR+L  V ++E SA     +K +F   I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V S  SF N   KWV E+ T        +LVG + DL D 
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 124
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAAL 170
                      ++ ++ E  E  AR+L  V ++E SA     +K +F   I AAL
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 179

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 79/147 (53%), Gaps = 4/147 (2%)
Query: 22  KTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 81
           K+S++ RF+   F +TY  TI  D   + +  +     LQ+ DT G  +F ++    I  
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIE-DTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 82  SSVAVIVYDVASRQSFLNTTKWVEEVRTERGS--DVIIVLVGNKTDLVDKRQVSIEEGEA 139
               ++V+ V S+QS        + +   +GS  D+ ++LVGNK D   +R+V   E +A
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET-QREVDTREAQA 138
Query: 140 KARELNVMFIETSAKAGFNIKALFRKI 166
            A+E    F+ETSAK  +N+K LF+++
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELFQEL 165

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V S  SF N   KWV E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAAL 170
                      ++ ++ E  E  AR+L  V ++E SA     +K +F   I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V S  SF N   KWV E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAAL 170
                      ++ ++ E  E  AR+L  V ++E SA     +K +F   I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 3/166 (1%)
Query: 3   PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQL 62
           P   L  YKLV +GD  VGK+++  +F    F   Y  TI   +L  T  ++++   L +
Sbjct: 7   PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTE-IDNQWAILDV 65
Query: 63  WDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVG 121
            DTAGQE F ++   Y+R     +IVY V  + SF +  ++ + + R +      ++LV 
Sbjct: 66  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 125
Query: 122 NKTDLVDKRQVSIEEGEAKARELNVMFIETSAK-AGFNIKALFRKI 166
           NK DL+  R+V+ ++G+  A + N+ +IETSAK    N+   F  +
Sbjct: 126 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL 171

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 88/189 (46%), Gaps = 17/189 (8%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S +   K V +GD +VGK  ++  +  +KF + Y  T+  D  + T+ +      L L+D
Sbjct: 6   SGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 64
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P     + V ++ + V S  SF N   KWV E+ T        +LVG +
Sbjct: 65  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQ 123
Query: 124 TDLVD------------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAA 169
            DL D            ++ ++ E  E  AR+L  V ++E SA     +K +F   I AA
Sbjct: 124 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 183
Query: 170 LPGMETLSS 178
           L   E   S
Sbjct: 184 LEPPEPKKS 192

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 3/166 (1%)
Query: 3   PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQL 62
           P   L  YKLV +GD  VGK+++  +F    F + Y  TI  D   K   ++++   L +
Sbjct: 12  PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIE-DSYRKHTEIDNQWAILDV 70
Query: 63  WDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVG 121
            DTAGQE F ++   Y+R     +IVY V  + SF +  ++ + + R +      ++LV 
Sbjct: 71  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130
Query: 122 NKTDLVDKRQVSIEEGEAKARELNVMFIETSAK-AGFNIKALFRKI 166
           NK DL+  R+V+ ++G+  A + N+ +IETSAK    N+   F  +
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL 176

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLRDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V S  SF N   KWV E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAAL 170
                      ++ ++ E  E  AR+L  V ++E SA     +K +F   I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y   +  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V S  SF N   KWV E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAAL 170
                      ++ ++ E  E  AR+L  V ++E SA     +K +F   I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
            + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT
Sbjct: 1   GMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 59
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++   Y+R     + V+ + + +SF +   + E++ R +   DV +VLVGNK+
Sbjct: 60  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKS 119
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAK 154
           DL   R V  ++ +  AR   + FIETSAK
Sbjct: 120 DLP-SRTVDTKQAQDLARSYGIPFIETSAK 148

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
            + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT
Sbjct: 1   GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 59
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++   Y+R     + V+ + + +SF +   + E++ R +   DV +VLVGNK+
Sbjct: 60  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKS 119
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAK 154
           DL   R V  ++ +  AR   + FIETSAK
Sbjct: 120 DLP-SRTVDTKQAQDLARSYGIPFIETSAK 148

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +K  + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKLPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V S  SF N   KWV E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAAL 170
                      ++ ++ E  E  AR+L  V ++E SA     +K +F   I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
            P+ ++ +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L 
Sbjct: 1   GPLGSMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLD 59
Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLV 120
           + DTAG E + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLV
Sbjct: 60  ILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLV 119
Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           GNK DL   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 GNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 161

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAG E 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGLED 67
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V S  SF N   KWV E+ T        +LVG + DL D 
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 126
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAALPGMET 175
                      ++ ++ E  E  AR+L  V ++E SA     +K +F   I AAL   E 
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 186
Query: 176 LSS 178
             S
Sbjct: 187 KKS 189

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGLED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V S  SF N   KWV E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAAL 170
                      ++ ++ E  E  AR+L  V ++E SA     +K +F   I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ LG+  VGK+++   F   + DN ++     D   + + ++   V L ++D   Q 
Sbjct: 13  FKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 72
Query: 70  RFRSLIPSYIRDSSVA-VIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLV 127
                +  +   +  A +IV+ V  R+SF    + +  +R  R   D+ ++LVGNK+DL 
Sbjct: 73  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 132
Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
             R+VS+EEG   A  L+   IETSA    N + LF
Sbjct: 133 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 168

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 87/159 (54%), Gaps = 3/159 (1%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++ +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT
Sbjct: 7   SMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 65
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK 
Sbjct: 66  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC 125
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           DL   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 126 DLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 163

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 19/179 (10%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           AP   +A+ KLV +GD   GKT+++     D +  TY  T+  ++ +  +  E++ V L 
Sbjct: 4   APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 62
Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT--KWVEEVRTERGSDVIIVL 119
           LWDT+G   + ++ P    DS   ++ +D+ SR   +++   KW  E+  +      ++L
Sbjct: 63  LWDTSGSPYYDNVRPLCYSDSDAVLLCFDI-SRPETVDSALKKWRTEI-LDYCPSTRVLL 120
Query: 120 VGNKTD----------LVDKRQ--VSIEEGEAKARELNV-MFIETSA-KAGFNIKALFR 164
           +G KTD          L  ++Q  +S E+G A A++L   +++E SA  +  +I ++FR
Sbjct: 121 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFR 179

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 19/179 (10%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           AP   +A+ KLV +GD   GKT+++     D +  TY  T+  ++ +  +  E++ V L 
Sbjct: 3   APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 61
Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT--KWVEEVRTERGSDVIIVL 119
           LWDT+G   + ++ P    DS   ++ +D+ SR   +++   KW  E+  +      ++L
Sbjct: 62  LWDTSGSPYYDNVRPLCYSDSDAVLLCFDI-SRPETVDSALKKWRTEI-LDYCPSTRVLL 119
Query: 120 VGNKTD----------LVDKRQ--VSIEEGEAKARELNV-MFIETSA-KAGFNIKALFR 164
           +G KTD          L  ++Q  +S E+G A A++L   +++E SA  +  +I ++FR
Sbjct: 120 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFR 178

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 19/179 (10%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           AP   +A+ KLV +GD   GKT+++     D +  TY  T+  ++ +  +  E++ V L 
Sbjct: 20  APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 78
Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT--KWVEEVRTERGSDVIIVL 119
           LWDT+G   + ++ P    DS   ++ +D+ SR   +++   KW  E+  +      ++L
Sbjct: 79  LWDTSGSPYYDNVRPLCYSDSDAVLLCFDI-SRPETVDSALKKWRTEI-LDYCPSTRVLL 136
Query: 120 VGNKTD----------LVDKRQ--VSIEEGEAKARELNV-MFIETSA-KAGFNIKALFR 164
           +G KTD          L  ++Q  +S E+G A A++L   +++E SA  +  +I ++FR
Sbjct: 137 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFR 195

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 3/160 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S + +YKLV +G   VGK+++  + + + F + Y  +I  D   K + ++  T  L + D
Sbjct: 5   SDMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIE-DSYRKQVVIDGETCLLDILD 63
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNK 123
           TAGQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK
Sbjct: 64  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 123
Query: 124 TDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
            DL   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 124 CDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 162

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 85/159 (53%), Gaps = 3/159 (1%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
            + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT
Sbjct: 18  GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 76
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++   Y+R     + V+ + + +SF +   + E++ R +   DV +VLVGNK 
Sbjct: 77  AGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKC 136
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           DL   R V  ++    A+   + FIETSAK    ++  F
Sbjct: 137 DL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 174

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
            + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT
Sbjct: 18  GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 76
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKT 124
           AG E + ++   Y+R     + V+ + + +SF +   + E++ R +   DV +VLVGNK 
Sbjct: 77  AGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKC 136
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAK 154
           DL   R V  ++ +  AR   + FIETSAK
Sbjct: 137 DLP-SRTVDTKQAQDLARSYGIPFIETSAK 165

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK ++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGN+ D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI   +  K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESY-RKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT 
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTG 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  +I  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           G E + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + +  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           G+E + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT 
Sbjct: 1   MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTT 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           GQE   ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++     L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGEICLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+  VGK+++   F   + D+ ++     D   + + ++   V L ++D   Q 
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62
Query: 70  RFRSLIPSYIRDSSVA-VIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLV 127
                +  +   +  A +IV+ V  R+SF    + +  +R  R   D+ ++LVGNK+DL 
Sbjct: 63  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122
Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
             R+VS+EEG   A  L+   IETSA    N + LF
Sbjct: 123 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 10/160 (6%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+  VGK+++   F   + D+ ++     D   + + ++   V L ++D   Q 
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ- 82
Query: 70  RFRSLIPSYIRDSSVA-----VIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNK 123
                   ++RD  +      +IV+ V  R+SF    + +  +R  R   D+ ++LVGNK
Sbjct: 83  ---GDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 139
Query: 124 TDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           +DL   R+VS+EEG   A  L+   IETSA    N + LF
Sbjct: 140 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
            QE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  AQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F +    TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK+D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           G E + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
            QE + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  AQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           G E + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           G E + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           G E + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETXLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
           G E + ++   Y+R     + V+ + + +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
           L   R V   + +  AR   + +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 83/160 (51%), Gaps = 18/160 (11%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 28  KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 86
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT--KWVEEVRTERGSDVIIVLVGNKTD- 125
             + ++ P    DS   +I +D+ SR   L++   KW  E++ E   +  ++LVG K+D 
Sbjct: 87  PYYDNVRPLSYPDSDAVLICFDI-SRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSDL 144
Query: 126 ---------LVDKRQ--VSIEEGEAKARELN-VMFIETSA 153
                    L + RQ  VS ++G   A+++    +IE SA
Sbjct: 145 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 184

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 83/160 (51%), Gaps = 18/160 (11%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 7   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 65
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT--KWVEEVRTERGSDVIIVLVGNKTD- 125
             + ++ P    DS   +I +D+ SR   L++   KW  E++ E   +  ++LVG K+D 
Sbjct: 66  PYYDNVRPLSYPDSDAVLICFDI-SRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSDL 123
Query: 126 ---------LVDKRQ--VSIEEGEAKARELN-VMFIETSA 153
                    L + RQ  VS ++G   A+++    +IE SA
Sbjct: 124 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 83/160 (51%), Gaps = 18/160 (11%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 23  KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 81
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT--KWVEEVRTERGSDVIIVLVGNKTD- 125
             + ++ P    DS   +I +D+ SR   L++   KW  E++ E   +  ++LVG K+D 
Sbjct: 82  PYYDNVRPLSYPDSDAVLICFDI-SRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSDL 139
Query: 126 ---------LVDKRQ--VSIEEGEAKARELN-VMFIETSA 153
                    L + RQ  VS ++G   A+++    +IE SA
Sbjct: 140 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 179

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 67/127 (52%), Gaps = 7/127 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDN--TYQATIGIDFLSKTMYLEDRTVR---LQLWDT 65
           KL  +G+   GKT+++ +    K  +     AT+GID     + + D+  R   L +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTK-WVEEVRTERGSDVIIVLVGNKT 124
           AG+E F S  P +    ++ + VYD++  Q+ ++  K W+  ++  R S   ++LVG   
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKA-RASSSPVILVGTHL 120
Query: 125 DLVDKRQ 131
           D+ D++Q
Sbjct: 121 DVSDEKQ 127

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 68/129 (52%), Gaps = 7/129 (5%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDN--TYQATIGIDFLSKTMYLEDRTVR---LQLW 63
           + KL  +G+   GKT+++ +    K  +     AT+GID     + + D+  R   L +W
Sbjct: 2   RXKLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTK-WVEEVRTERGSDVIIVLVGN 122
           D AG+E F S  P +    ++ + VYD++  Q+ ++  K W+  ++  R S   ++LVG 
Sbjct: 62  DFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKA-RASSSPVILVGT 120
Query: 123 KTDLVDKRQ 131
             D+ D++Q
Sbjct: 121 HLDVSDEKQ 129

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L+ LG  + GKT+I+ +F  +  D T   T+G +   KT  LE R  +L +WD  GQ
Sbjct: 16  ELRLLMLGLDNAGKTTILKKFNGEDID-TISPTLGFNI--KT--LEHRGFKLNIWDVGGQ 70
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRT-ERGSDVIIVLVGNKTDL 126
           +  RS   +Y   +   + V D A RQ   +  + ++ +   ER +   +++  NK DL
Sbjct: 71  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 129

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L+ LG  + GKT+I+ +F  +  D T   T+G +   KT  LE R  +L +WD  GQ
Sbjct: 18  ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNI--KT--LEHRGFKLNIWDVGGQ 72
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRT-ERGSDVIIVLVGNKTDL 126
           +  RS   +Y   +   + V D A RQ   +  + ++ +   ER +   +++  NK DL
Sbjct: 73  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L+ LG  + GKT+I+ +F  +  D T   T+G +   KT  LE R  +L +WD  GQ
Sbjct: 18  ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNI--KT--LEHRGFKLNIWDVGGQ 72
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRT-ERGSDVIIVLVGNKTDL 126
           +  RS   +Y   +   + V D A RQ   +  + ++ +   ER +   +++  NK DL
Sbjct: 73  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 5/127 (3%)
Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           + P  +  + +L  +G Q  GKT+ +      +F+     T+G +    T       V +
Sbjct: 14  LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTI 69
Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
           +LWD  GQ RFRS+   Y R  S  V + D A ++    +   +  +  +     I VLV
Sbjct: 70  KLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLV 129
Query: 121 -GNKTDL 126
            GNK DL
Sbjct: 130 LGNKRDL 136

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
            L  LG +  GK+++  +F+  +F + Y   +  D  S    ++ + V L++ DTA  + 
Sbjct: 23  NLAILGRRGAGKSALTVKFLTKRFISEYDPNLE-DTYSSEETVDHQPVHLRVMDTADLDT 81
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVR---TERGSDVIIVLVGNKTDLV 127
            R+    Y+  +   ++VY V SRQSF +++ ++E +     E    +  +L+GNK D+ 
Sbjct: 82  PRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140
Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGF-NIKALFRK 165
             RQV+  EG A A     +F E SA   F +++ +F +
Sbjct: 141 QYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHE 179

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           + P  +  + +L  +G Q  GKT+ +      +F      T+G +    T       V +
Sbjct: 14  LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT----KGNVTI 69
Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
           ++WD  GQ RFRS+   Y R  +  V + D A R+    +   +  +  +     I VLV
Sbjct: 70  KIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLV 129
Query: 121 -GNKTDL---VDKRQV 132
            GNK DL   +D++Q+
Sbjct: 130 LGNKRDLPNALDEKQL 145

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +L  +G Q  GKT+ +      +F+     T+G +    T       V ++LWD  GQ R
Sbjct: 33  ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQPR 88
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV-GNKTDL 126
           FRS+   Y R  S  V + D A ++    +   +  +  +     I VLV GNK DL
Sbjct: 89  FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 145

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+I+ +    +   T   T+G +  + T     + V+  +WD  GQ++
Sbjct: 324 RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 378
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVD- 128
            R L   Y   +   + V D A R       + +  +  +R   D II++  NK DL D 
Sbjct: 379 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 438
Query: 129 --KRQVSIEEGEAKARELNVMFIETSAKAG 156
               ++  + G  + R+ N     + A +G
Sbjct: 439 MKPHEIQEKLGLTRIRDRNWYVQPSCATSG 468

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 19  SVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 78
           + GKT+I+ +F  +  D T   T+G +   KT  LE R  +L +WD  GQ+  RS   +Y
Sbjct: 28  NAGKTTILKKFNGEDVD-TISPTLGFNI--KT--LEHRGFKLNIWDVGGQKSLRSYWRNY 82
Query: 79  IRDSSVAVIVYDVASRQSFLNTTKWVEEVRT-ERGSDVIIVLVGNKTDL 126
              +   + V D A RQ   +  + ++ +   ER +   +++  NK DL
Sbjct: 83  FESTDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDL 131

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+I+ +    +   T   T+G +  + T     + V+  +WD  GQ++
Sbjct: 2   RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 56
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVD- 128
            R L   Y   +   + V D A R       + +  +  +R   D II++  NK DL D 
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 116
Query: 129 --KRQVSIEEGEAKARELNVMFIETSAKAG 156
               ++  + G  + R+ N     + A +G
Sbjct: 117 MKPHEIQEKLGLTRIRDRNWYVQPSCATSG 146

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+I+ +    +   T   T+G +  + T     + V+  +WD  GQ++
Sbjct: 2   RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 56
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVD- 128
            R L   Y   +   + V D A R       + +  +  +R   D II++  NK DL D 
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 116
Query: 129 --KRQVSIEEGEAKARELNVMFIETSAKAG 156
               ++  + G  + R+ N     + A +G
Sbjct: 117 MKPHEIQEKLGLTRIRDRNWYVQPSCATSG 146

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+I+ +    +   T   T+G +  + T     + V+  +WD  GQ++
Sbjct: 14  RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 68
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVD- 128
            R L   Y   +   + V D A R       + +  +  +R   D II++  NK DL D 
Sbjct: 69  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 128
Query: 129 --KRQVSIEEGEAKARELNVMFIETSAKAG 156
               ++  + G  + R+ N     + A +G
Sbjct: 129 MKPHEIQEKLGLTRIRDRNWYVQPSCATSG 158

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+I+ +    +   T   T+G +  + T     + V+  +WD  GQ++
Sbjct: 15  RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 69
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVD- 128
            R L   Y   +   + V D A R       + +  +  +R   D II++  NK DL D 
Sbjct: 70  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 129
Query: 129 --KRQVSIEEGEAKARELNVMFIETSAKAG 156
               ++  + G  + R+ N     + A +G
Sbjct: 130 MKPHEIQEKLGLTRIRDRNWYVQPSCATSG 159

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+I+ +    +   T   T+G +  + T     + V+  +WD  GQ++
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 56
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVD- 128
            R L   Y   +   + V D A R       + +  +  +R   D II++  NK DL D 
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDA 116
Query: 129 --KRQVSIEEGEAKARELNVMFIETSAKAG 156
               ++  + G  + R+ N     + A +G
Sbjct: 117 XKPHEIQEKLGLTRIRDRNWYVQPSCATSG 146

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           + P  +  ++K++ +G  + GKT+I+ +F  ++  +T   TIG    S    +     R 
Sbjct: 14  LVPRGSHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG----SNVEEIVINNTRF 68
Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ 95
            +WD  GQE  RS   +Y  ++   ++V D   R+
Sbjct: 69  LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 103

>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco) Length = 535

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 83/183 (45%), Gaps = 16/183 (8%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMY----LED----RTV 58
           L + K+  +GD   GKTS++ + + + FD     T G++ ++K       LE+    +  
Sbjct: 39  LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC 98
Query: 59  RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIV 118
               WD  GQE   +    ++  SSV +++ D  +     N   W+  +    G   +IV
Sbjct: 99  LFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDS---NKHYWLRHIEKYGGKSPVIV 155
Query: 119 LVGNKTDLVDKRQVSIEEGEAKAR--ELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
           ++ NK D  +    +IE+ +   R   +   F   S K G  ++++ + + +A+   +++
Sbjct: 156 VM-NKID--ENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPDSI 212
Query: 177 SST 179
             T
Sbjct: 213 YGT 215

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ +G  + GKT+I+ +    +   T   TIG +  +    +E + +   +WD  GQ
Sbjct: 17  QMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNICFTVWDVGGQ 71
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSF------LNTTKWVEEVRTERGSDVIIVLVGN 122
           +R R L   Y +++   + V D   R+        L     V+E+R     D +++L  N
Sbjct: 72  DRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELR-----DAVLLLFAN 126
Query: 123 KTDLVDKRQVS 133
           K DL +   +S
Sbjct: 127 KQDLPNAMAIS 137

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+++ +   +   +    T G +  S    ++ +  +L +WD  GQ +
Sbjct: 19  RILLLGLDNAGKTTLLKQLASEDISHIT-PTQGFNIKS----VQSQGFKLNVWDIGGQRK 73
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV-GNKTDLVDK 129
            R    SY  ++ + + V D A R+ F  T + + E+  E     + VL+  NK DL+  
Sbjct: 74  IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 133
Query: 130 RQVS-IEEG 137
              S I EG
Sbjct: 134 APASEIAEG 142

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+++ +   +   +    T G +  S    ++ +  +L +WD  GQ +
Sbjct: 18  RILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFNIKS----VQSQGFKLNVWDIGGQRK 72
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV-GNKTDLVDK 129
            R    SY  ++ + + V D A R+ F  T + + E+  E     + VL+  NK DL+  
Sbjct: 73  IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132
Query: 130 RQVS-IEEG 137
              S I EG
Sbjct: 133 APASEIAEG 141

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           ++ +++ LG  + GKT+++ +   +   +    T G +  S    ++ +  +L +WD  G
Sbjct: 3   SEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFNIKS----VQSQGFKLNVWDIGG 57
Query: 68  QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV-GNKTDL 126
           Q + R    SY  ++ + + V D A R+ F  T + + E+  E     + VL+  NK DL
Sbjct: 58  QRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 117
Query: 127 VDKRQVS-IEEG 137
           +     S I EG
Sbjct: 118 LTAAPASEIAEG 129

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++K++ +G  + GKT+I+ +F  ++  +T   TIG    S    +     R  +WD  GQ
Sbjct: 21  EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG----SNVEEIVINNTRFLMWDIGGQ 75
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQ 95
           E  RS   +Y  ++   ++V D   R+
Sbjct: 76  ESLRSSWNTYYTNTEFVIVVVDSTDRE 102

>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 12/153 (7%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLVFLG  + GKT+++     D+     Q    +   S+ + +   T     +D  G E+
Sbjct: 37  KLVFLGLDNAGKTTLLHMLKDDRLG---QHVPTLHPTSEELTIAGMT--FTTFDLGGHEQ 91
Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRT-ERGSDVIIVLVGNKTDLVDK 129
            R +  +Y+   +  V + D A     + +   +  + T E  S+V I+++GNK D  D 
Sbjct: 92  ARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDA 151
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKAL 162
                   E K RE+  ++ +T+ K    +K L
Sbjct: 152 IS------EEKLREIFGLYGQTTGKGNVTLKEL 178

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 9  KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
          ++K++ +G  + GKT+I+ +F+ ++  +T   TIG    S    +  +     +WD  GQ
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFLMNEVVHT-SPTIG----SNVEEIVVKNTHFLMWDIGGQ 70
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQ 95
          E  RS   +Y  ++   ++V D   R+
Sbjct: 71 ESLRSSWNTYYSNTEFIILVVDSIDRE 97

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 9  KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
          ++K++ +G  + GKT+I+ +F  ++  +T   TIG    S    +     R  +WD  GQ
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG----SNVEEIVINNTRFLMWDIGGQ 70
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQ 95
          E  RS   +Y  ++   ++V D   R+
Sbjct: 71 ESLRSSWNTYYTNTEFVIVVVDSTDRE 97

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 9  KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
          ++K++ +G  + GKT+I+ +F  ++  +T   TIG    S    +     R  +WD  GQ
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG----SNVEEIVINNTRFLMWDIGGQ 70
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQ 95
          E  RS   +Y  ++   ++V D   R+
Sbjct: 71 ESLRSSWNTYYTNTEFVIVVVDSTDRE 97

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	208
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-109
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-105
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	2e-98
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	4e-98
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-96
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	3e-96
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-91
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-90
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	2e-88
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	5e-86
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-78
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-78
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	2e-78
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-78
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-77
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	2e-77
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	3e-77
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-74
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	2e-74
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	4e-74
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	7e-74
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	2e-73
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	2e-73
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	2e-73
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	2e-73
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	3e-73
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	4e-73
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	5e-73
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	5e-73
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	5e-73
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	7e-73
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	2e-72
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	2e-72
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	3e-72
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	6e-72
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	9e-72
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-71
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	3e-71
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	5e-71
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	5e-71
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	7e-71
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	2e-70
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	6e-70
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	7e-70
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	2e-69
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	4e-69
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	8e-69
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-68
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	1e-68
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	3e-67
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	1e-66
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	1e-66
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-66
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	8e-66
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	1e-65
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-65
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	2e-65
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	3e-64
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	6e-63
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	9e-62
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	1e-61
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-61
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	3e-60
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	4e-59
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	5e-59
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	8e-59
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	2e-58
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	1e-57
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	5e-53
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	9e-51
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	5e-50
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-45
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	5e-45
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	2e-44
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	3e-44
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	5e-44
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	3e-43
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	6e-43
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	8e-43
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-41
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	3e-41
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	5e-40
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	1e-39
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-27
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	1e-26
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	4e-17
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	2e-16
3llu_A	196	RAS-related GTP-binding protein C; structural geno	1e-14
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	6e-12
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	8e-12
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	9e-12
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	1e-11
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-11
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	2e-11
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	3e-11
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	3e-11
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	4e-11
2fh5_B	214	SR-beta, signal recognition particle receptor beta	5e-11
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	6e-11
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	1e-10
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	1e-10
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	4e-10
2ged_A	193	SR-beta, signal recognition particle receptor beta	5e-10
1nrj_B	218	SR-beta, signal recognition particle receptor beta	7e-10
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	6e-08
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	4e-07
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	6e-07
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	2e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-06
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	1e-05
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	4e-04
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	4e-04
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	4e-04
2wji_A	165	Ferrous iron transport protein B homolog; membrane	5e-04
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	7e-04
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	7e-04

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  310 bits (796), Expect = e-109
 Identities = 150/204 (73%), Positives = 172/204 (84%), Gaps = 5/204 (2%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 12  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 71

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
           TAG ERFRSLIPSYIRDS+VAV+VYD+ +  SF  TTKW+++VRTERGSDVII+LVGNKT
Sbjct: 72  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 131

Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDL 184
           DL DKRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGME+     +ED+
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 191

Query: 185 VDVNLKSSNTNTSQSQPQSGGCAC 208
           +D+ L        Q QP S G   
Sbjct: 192 IDIKL-----EKPQEQPVSEGGCL 210

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  299 bits (769), Expect = e-105
 Identities = 139/168 (82%), Positives = 157/168 (93%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA
Sbjct: 12  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 71

Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
           GQERFRSLIPSYIRDS+VAV+VYD+ +  SF  T+KW+++VRTERGSDVII+LVGNKTDL
Sbjct: 72  GQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL 131

Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGME 174
            DKRQVS EEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGM+
Sbjct: 132 SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 179

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  282 bits (724), Expect = 2e-98
 Identities = 69/174 (39%), Positives = 108/174 (62%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           +   SA+ + K+  LGD  VGK+SI+ RF+ D FD+    TIG  F++KT+   +   + 
Sbjct: 15  VPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKF 74

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
            +WDTAGQERF SL P Y R S+ AVIVYD+  + SF    KWV+E++     ++++ + 
Sbjct: 75  LIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIA 134

Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGME 174
           GNK DL D R+V +++ +  A  +  + +ETSAK   NI+ LF+ I+  +P ++
Sbjct: 135 GNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLD 188

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  281 bits (722), Expect = 4e-98
 Identities = 71/170 (41%), Positives = 114/170 (67%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             KLV LGD   GK+S++ RF+ D+F    ++TIG  F S+T+ + D TV+ ++WDTAGQ
Sbjct: 12  NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 71

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           ER+ SL P Y R ++ A+IV+DV ++ SF    KWV+E++ +   ++++ L GNK+DL+D
Sbjct: 72  ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131

Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSS 178
            R+V+ E+ +  A+E  + F+ETSAK   N+K +F +IA  LP ++   +
Sbjct: 132 ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTEN 181

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  276 bits (709), Expect = 2e-96
 Identities = 68/167 (40%), Positives = 101/167 (60%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           SAL + K+  LGD  VGK+SI+ RF+ D FD     TIG  F++KT+  ++   +  +WD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
           TAG ERFR+L P Y R S+ A+IVYD+   ++F     WV E+R      +++ + GNK 
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121

Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
           DL D R+V   + +  A  ++ +F+ETSAK   NI  LF +I+  +P
Sbjct: 122 DLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  276 bits (708), Expect = 3e-96
 Identities = 68/167 (40%), Positives = 113/167 (67%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WD
Sbjct: 2   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
           TAGQER+ SL P Y R +  A++VYD+ + +SF     WV+E++ +   +++I L GNK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121

Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
           DL +KR V  +E ++ A + +++F+ETSAK   N+  +F  IA  LP
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  264 bits (678), Expect = 1e-91
 Identities = 65/162 (40%), Positives = 100/162 (61%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R+  +KF++ +  T+G  FL+K + +  + V L +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RF +L P Y RDS+ A++VYD+    SF     WV+E+R   G+++ + +VGNK DL  +
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
           R VSI+E E+ A  +      TSAK    I+ LF  +   + 
Sbjct: 127 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  262 bits (672), Expect = 1e-90
 Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 4/170 (2%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAG 67
           + K+V LGD + GKTS+ T F  + F   Y+ TIG+DF  + + L     V LQ+WD  G
Sbjct: 6   QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65

Query: 68  QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKW---VEEVRTERGSDVIIVLVGNKT 124
           Q     ++  YI  +   ++VYD+ + QSF N   W   V++V  E  +  ++ LVGNK 
Sbjct: 66  QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKI 125

Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGME 174
           DL   R +  E+     +E        SAK G ++   F+K+AA + G++
Sbjct: 126 DLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK 175

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  256 bits (657), Expect = 2e-88
 Identities = 61/161 (37%), Positives = 91/161 (56%), Gaps = 1/161 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K+V +G+ +VGK+S+I R+    F   Y+ TIG+DFL + + + D  VRL LWDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
            F ++  +Y R +   V+V+    R+SF   + W E+V  E   D+   LV NK DL+D 
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDD 124

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
             +  EE E  A+ L + F  TS K   N+  +F+ +A   
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  251 bits (644), Expect = 5e-86
 Identities = 66/203 (32%), Positives = 108/203 (53%), Gaps = 8/203 (3%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRT----ERGSDVIIVLVGNKTD 125
           RF+SL  ++ R +   V+V+DV +  +F     W +E           +   V++GNK D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128

Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLV 185
           L +++  +         + N+ + ETSAK   N++  F+ IA      ET      E   
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPE 188

Query: 186 DVNLKSSNTNTSQSQPQSGGCAC 208
            + L        +++  +  C+C
Sbjct: 189 PIKL----DKNERAKASAESCSC 207

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  232 bits (595), Expect = 1e-78
 Identities = 70/162 (43%), Positives = 110/162 (67%), Gaps = 1/162 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD SVGKT ++ RF    F     +TIG+DF  KT+ ++ + V+LQ+WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  SY R ++ A++ YD+  R SFL+   W+E+VR   GS+++ +L+GNK+DL + 
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149

Query: 130 RQVSIEEGEAKARELNVM-FIETSAKAGFNIKALFRKIAAAL 170
           R+VS+ E ++ A   +++  IETSAK   N++  F ++A  L
Sbjct: 150 REVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  232 bits (595), Expect = 1e-78
 Identities = 67/167 (40%), Positives = 94/167 (56%), Gaps = 6/167 (3%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK+V  GD +VGK+S + R   ++F     AT+G+DF  KT+ ++     LQLWDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           RFRS+  SY R +   +++YDV   +SFLN  +WV+ +       V I+LVGNK D+ D 
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148

Query: 129 -----KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
                ++ V    GE  A     +F ETSAK G NI      +A  +
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  232 bits (595), Expect = 2e-78
 Identities = 53/191 (27%), Positives = 93/191 (48%), Gaps = 3/191 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +F  L   Y   +  A+I++DV SR ++ N   W  ++      ++ IVL GNK D+ D+
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 134

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVDVNL 189
           +     +     R+ N+ + + SAK+ +N +  F  +A  L G   L       L    +
Sbjct: 135 KVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEV 192

Query: 190 KSSNTNTSQSQ 200
                  +Q +
Sbjct: 193 VMDPALAAQYE 203

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  231 bits (590), Expect = 2e-78
 Identities = 73/168 (43%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           +   KLV LG+ +VGK+SI+ RF+ + F    + TIG  FL++ + + + TV+ ++WDTA
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60

Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
           GQERF SL P Y R++  A++VYDV   QSF+    WV+E+  +   D+II LVGNK D 
Sbjct: 61  GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDX 120

Query: 127 V---DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
           +    +R+V+ EEGE  A E  ++F ETSAK G N+  +F  I   +P
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  230 bits (589), Expect = 1e-77
 Identities = 78/200 (39%), Positives = 115/200 (57%), Gaps = 3/200 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+  VGK+ ++ RF  D + N Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  SY R S   +IVYDV  ++SF     W++E+     S V+ +LVGNK DL DK
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVDVNL 189
           R V  +  +  A    + F+ETSA    N++  F  +A  +   E++S     +      
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI--KESMSQQNLNETTQKKE 186

Query: 190 KSSNTN-TSQSQPQSGGCAC 208
              N N   QS   +GGC C
Sbjct: 187 DKGNVNLKGQSLTNTGGCCC 206

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  230 bits (589), Expect = 2e-77
 Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 1/195 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIG-IDFLSKTMYLEDRTVRLQLWDTAGQ 68
           YK+  +GD  VGKT+ I R +  +F+  Y AT+G ++     +  +   ++  +WDTAGQ
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           E+   L   Y   +S A++ +DV SR +  N  +WV+E +   G++  IV+  NK D+ +
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131

Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVDVN 188
           ++++S +      +  N  + E SAK   N    F  +A    G   L      +L    
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTE 191

Query: 189 LKSSNTNTSQSQPQS 203
           +     +  +S+   
Sbjct: 192 VNYDYHSPEESKYID 206

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  229 bits (587), Expect = 3e-77
 Identities = 54/182 (29%), Positives = 92/182 (50%), Gaps = 11/182 (6%)

Query: 1   MAPVSALAKY--KLVFLGDQSVGKTSIITRFMY--DKFDNTYQATIGIDFLSKTMYLEDR 56
           + P+   A    K+  +G+ +VGK+++I+ F     KF   Y  T G++ +   + + D 
Sbjct: 10  VKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDT 69

Query: 57  TVRLQLW--DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-- 112
           TV ++L+  DTAG + ++  I  Y      A++V+DV+S +SF +   W E +++ R   
Sbjct: 70  TVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDR 129

Query: 113 -SDVIIVLVGNKTDLVDKR-QVSIEEGEAKARELNVMFIETSAKA-GFNIKALFRKIAAA 169
              +  VLV NKTDL  +R QV ++  +  A    + F + SA   G +  A F  IA  
Sbjct: 130 ERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATT 189

Query: 170 LP 171
             
Sbjct: 190 FY 191

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  221 bits (566), Expect = 1e-74
 Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 2/162 (1%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
             +K++ +G+  VGK+++   F   + D+ ++     D   + + ++   V L ++D   
Sbjct: 1   GVFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWE 60

Query: 68  QERFRSLIPS-YIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGNKTD 125
           Q      +    ++     +IV+ V  R+SF    + +  +R  R    + ++LVGNK+D
Sbjct: 61  QGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSD 120

Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           L   R+VS+EEG   A  L+   IETSA    N + LF    
Sbjct: 121 LARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAV 162

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  221 bits (566), Expect = 2e-74
 Identities = 63/161 (39%), Positives = 103/161 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +   +++YD+A+++SF     W  +++T    +  ++LVGNK DL D+
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           R V  E+G   A +L   F E SAK   N+K +F ++   +
Sbjct: 143 RVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  221 bits (565), Expect = 4e-74
 Identities = 63/194 (32%), Positives = 120/194 (61%), Gaps = 1/194 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R +  +Y R +  A++VYD+A   ++ N  +W++E+R    S+++I+LVGNK+DL   
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVDVNL 189
           R V  +E  A A + N+ FIETSA    N++  F+ I   +  + +          D + 
Sbjct: 126 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESP 185

Query: 190 KSSNTNTSQSQPQS 203
            ++  + S   P +
Sbjct: 186 GNNVVDISV-PPTT 198

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  220 bits (563), Expect = 7e-74
 Identities = 59/161 (36%), Positives = 110/161 (68%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A++VYD+A   ++ N  +W++E+R    S+++I+LVGNK+DL   
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           R V  +E  A A +  + FIETSA    N++A F+ I   +
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  218 bits (559), Expect = 2e-73
 Identities = 57/161 (35%), Positives = 101/161 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   KF      TIG++F ++ + +  + ++LQ+WDTAGQE
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  SY R ++ A++VYD+  R ++ + + W+ + R     + +I+L+GNK DL  +
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 135

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           R V+ EE +  A E  ++F+E SAK G N++  F + A  +
Sbjct: 136 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  219 bits (560), Expect = 2e-73
 Identities = 65/161 (40%), Positives = 103/161 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  SY R +   ++VYDV  ++SF N  +W++E+      +V  +LVGNK DL  K
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           + V     +  A  L + F+ETSAK   N++  F  +AA +
Sbjct: 154 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 194

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  218 bits (559), Expect = 2e-73
 Identities = 63/168 (37%), Positives = 96/168 (57%), Gaps = 7/168 (4%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQ 68
            K++ LGD  VGKTS++ R++ DK+   Y+ATIG DFL+K + ++ D+   +Q+WDTAGQ
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRT----ERGSDVIIVLVGNKT 124
           ERF+SL  ++ R +   V+VYDV +  SF N   W +E               V++GNK 
Sbjct: 69  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128

Query: 125 DLVD-KRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALFRKIAAAL 170
           D  + K+ VS +  +  A+ L  +    TSAK   N+   F +IA + 
Sbjct: 129 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  219 bits (560), Expect = 2e-73
 Identities = 67/195 (34%), Positives = 107/195 (54%), Gaps = 3/195 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +   +++YD+ + +SF     W  +++T    +  ++LVGNK D+ D+
Sbjct: 69  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 128

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQE-DLVDVN 188
           R VS E G   A  L   F E SAK   N+K  F ++   +   E +S +    D     
Sbjct: 129 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI--CEKMSESLDTADPAVTG 186

Query: 189 LKSSNTNTSQSQPQS 203
            K     T Q  P  
Sbjct: 187 AKQGPQLTDQQAPPH 201

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  219 bits (560), Expect = 3e-73
 Identities = 64/201 (31%), Positives = 100/201 (49%), Gaps = 40/201 (19%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTV--------- 58
           + YK V LG+ SVGK+SI+ R   D F      TIG  F +  + L D  +         
Sbjct: 6   SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKN 65

Query: 59  ----------------------------RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90
                                       +  +WDTAGQER+ S++P Y R ++ A++V+D
Sbjct: 66  NNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD 125

Query: 91  VASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIE 150
           +++  +      WV +++    S+ II+LV NK D  +K QV I E +  A++ N++FI+
Sbjct: 126 ISNSNTLDRAKTWVNQLKIS--SNYIIILVANKIDK-NKFQVDILEVQKYAQDNNLLFIQ 182

Query: 151 TSAKAGFNIKALFRKIAAALP 171
           TSAK G NIK +F  +A  + 
Sbjct: 183 TSAKTGTNIKNIFYMLAEEIY 203

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  218 bits (558), Expect = 4e-73
 Identities = 61/161 (37%), Positives = 102/161 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G+   GK+ ++ +F+  KF +    TIG++F SK + +  + V+LQ+WDTAGQE
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFRS+  SY R ++ A++VYD+ SR+++   T W+ + R     +++I+L GNK DL   
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           R+V+  E    A+E  +MF+ETSA  G N++  F + A  +
Sbjct: 131 REVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  218 bits (558), Expect = 5e-73
 Identities = 65/161 (40%), Positives = 100/161 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ +    V+LQ+WDTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFRS+  SY R ++  ++ YD+   +SF    +W+ E+     + VI VLVGNK DL ++
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           R+VS +  E  +   ++ ++ETSAK   N++ LF  +A  L
Sbjct: 147 REVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  218 bits (557), Expect = 5e-73
 Identities = 53/161 (32%), Positives = 101/161 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT++++RF  ++F +  + TIG++F ++T+ L    V+ Q+WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A++V+D+   Q++    +W++E+     + ++++LVGNK+DL   
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           R+V  EE    A    ++F+ETSA    N++  F  +   +
Sbjct: 146 REVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  219 bits (560), Expect = 5e-73
 Identities = 60/209 (28%), Positives = 111/209 (53%), Gaps = 12/209 (5%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++T+ +E + ++ Q+WDTAGQE
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A+IVYD++   S+ N   W+ E+R     +V + L+GNK+DL   
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL 133

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL------------PGMETLS 177
           R V  EE +  A+E  ++F ETSA    N+   F ++   +                  +
Sbjct: 134 RAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGN 193

Query: 178 STKQEDLVDVNLKSSNTNTSQSQPQSGGC 206
           +          +  + T     +     C
Sbjct: 194 ANGASAPNGPTISLTPTPNENKKANGNNC 222

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  218 bits (557), Expect = 7e-73
 Identities = 61/161 (37%), Positives = 104/161 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G    GK+ ++ +F+ +KF      TIG++F S+ + +  +TV+LQ+WDTAGQE
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFRS+  SY R ++ A++VYD+ SR+++ +   W+ + RT    +++++L GNK DL  +
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           R+V+  E    A+E  +MF+ETSA  G N++  F K A  +
Sbjct: 146 REVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  217 bits (554), Expect = 2e-72
 Identities = 64/161 (39%), Positives = 108/161 (67%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
            FRS+  SY R ++ A++VYD+  R++F + T W+E+ R    S+++I+L+GNK+DL  +
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           R V  EEGEA ARE  ++F+ETSAK   N++  F   A  +
Sbjct: 142 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  217 bits (554), Expect = 2e-72
 Identities = 65/161 (40%), Positives = 103/161 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  SY R +   ++VYDV  ++SF N  +W++E+      +V  +LVGNK DL  K
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           + V     +  A  L + F+ETSAK   N++  F  +AA +
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  215 bits (551), Expect = 3e-72
 Identities = 68/161 (42%), Positives = 107/161 (66%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  +Y R +   ++VYD+ + +SF N   W+  +     +DV  +++GNK D+ DK
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           RQVS E GE  A +  + F+ETSAKA  N++  F  +A  +
Sbjct: 129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  215 bits (550), Expect = 6e-72
 Identities = 59/161 (36%), Positives = 102/161 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  ++ V+LQ+WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +   +++YD+ + +SF     W  +++T    +  ++LVGNK D+ ++
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           R V  E+G+  A +L   F E SAK   +++  F ++  A+
Sbjct: 144 RVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  216 bits (551), Expect = 9e-72
 Identities = 71/193 (36%), Positives = 118/193 (61%), Gaps = 4/193 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQE
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  +Y R +   ++VYDV   ++F N  +W + V      +  ++LVGNK+D+ + 
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 139

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL---PGMETLSSTKQEDLVD 186
           R V+ ++GEA A+EL + FIE+SAK   N+  +F  +A  +        L         +
Sbjct: 140 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNGKEGN 199

Query: 187 VNLKSSNTNTSQS 199
           +++ S + N+S+S
Sbjct: 200 ISINSGSGNSSKS 212

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  214 bits (547), Expect = 1e-71
 Identities = 62/161 (38%), Positives = 100/161 (62%), Gaps = 1/161 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+S++ RF  + F  +Y  TIG+DF  +T+ +    V+LQ+WDTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  +Y R +   ++VYDV S +SF+N  +W+ E+  +   DV  +LVGNK D  ++
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEIN-QNCDDVCRILVGNKNDDPER 128

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           + V  E+    A ++ +   ETSAK   N++ +F  I   +
Sbjct: 129 KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  213 bits (545), Expect = 3e-71
 Identities = 68/162 (41%), Positives = 102/162 (62%), Gaps = 1/162 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +K++ +GD  VGKT ++ RF    F   T+ +T+GIDF +K + ++   V+LQ+WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           ERFRS+  +Y RD+   +++YDV ++ SF N   W+ E+      DV ++L+GNK D   
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130

Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           +R V  E+GE  A+E  + F+ETSAK G N+   F  IA  L
Sbjct: 131 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  212 bits (543), Expect = 5e-71
 Identities = 64/161 (39%), Positives = 106/161 (65%), Gaps = 1/161 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQ+WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  +Y R +   ++VYD+   ++F N  +W + V      +  ++LVGNK+D+ + 
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 122

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           R V+ ++GEA A+EL + FIE+SAK   N+  +F  +A  +
Sbjct: 123 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  213 bits (544), Expect = 5e-71
 Identities = 58/162 (35%), Positives = 101/162 (62%), Gaps = 1/162 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            +++ +G + VGKTS++ RF  D F    ++T+G+DF  KT+ L  + +RLQ+WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RF S+  +Y R +   ++VYD+  +++F +  KW++ +      D  ++LVGNK D    
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD 146

Query: 130 RQVSIEEGEAKARELN-VMFIETSAKAGFNIKALFRKIAAAL 170
           R+++ ++GE  A+++  + F E SAK  FN+  +F K+   +
Sbjct: 147 REITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  213 bits (544), Expect = 7e-71
 Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 2/160 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+  VGK+++   F   + D+ ++     D   + + ++   V L ++D   Q 
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83

Query: 70  RFRSLIPS-YIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGNKTDLV 127
                +    ++     +IV+ V  R+SF    + +  +R  R    + ++LVGNK+DL 
Sbjct: 84  DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143

Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
             R+VS+EEG   A  L+   IETSA    N + LF    
Sbjct: 144 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAV 183

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  211 bits (540), Expect = 2e-70
 Identities = 60/166 (36%), Positives = 97/166 (58%), Gaps = 5/166 (3%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT +  RF   +F +  +ATIG+DF  + + ++   +++QLWDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80

Query: 70  RFR-SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKTDLV 127
           RFR S++  Y R+    V VYD+ +  SF +   W+EE +     +D+  +LVGNK DL 
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140

Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKA---GFNIKALFRKIAAAL 170
              QV  +  +  A   ++   ETSAK      +++A+F  +A  L
Sbjct: 141 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  210 bits (537), Expect = 6e-70
 Identities = 64/162 (39%), Positives = 100/162 (61%), Gaps = 2/162 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ +G+  VGK+S++ RF  D FD    ATIG+DF  KT+ ++    +L +WDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVD 128
           RFR+L PSY R +   ++VYDV  R +F+    W+ E+ T    +D++ +LVGNK D  +
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK-E 134

Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
            R+V   EG   AR+ +++FIE SAK    ++  F ++   +
Sbjct: 135 NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 176

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  210 bits (536), Expect = 7e-70
 Identities = 66/172 (38%), Positives = 100/172 (58%), Gaps = 8/172 (4%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA  S+L  +K++ LGD  VGK+S++ R++ +KFD     TIG++FL+K + ++   V +
Sbjct: 1   MAGKSSL--FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM 58

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRT----ERGSDVI 116
           Q+WDTAGQERFRSL   + R S   ++ + V   QSF N + W +E       +      
Sbjct: 59  QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 118

Query: 117 IVLVGNKTDLVDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALFRKIA 167
            V++GNK D+  +RQVS EE +A  R+     + ETSAK   N+ A F +  
Sbjct: 119 FVILGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAV 169

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  210 bits (536), Expect = 2e-69
 Identities = 62/172 (36%), Positives = 98/172 (56%), Gaps = 11/172 (6%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVR 59
            KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +    +           V 
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85

Query: 60  LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRT-ERGSDVIIV 118
           LQLWDTAGQERFRSL  ++ RD+   ++++D+ S+QSFLN   W+ +++      +  IV
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145

Query: 119 LVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           L+GNK DL D+R+V+  +    A +  + + ETSA  G N++     +   +
Sbjct: 146 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  207 bits (530), Expect = 4e-69
 Identities = 41/180 (22%), Positives = 82/180 (45%), Gaps = 15/180 (8%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNT--YQATIGIDFLSKTMYLED---RTVRLQLW 63
           + KL+ +G+   GKT+++ + M  K  +     AT+GID     + + D   R + L +W
Sbjct: 2   RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61

Query: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTK-WVEEVRTERGSDVIIVLVGN 122
           D AG+E F S  P ++   ++ + VYD++  Q+ ++  K W+  ++  R S   ++LVG 
Sbjct: 62  DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIK-ARASSSPVILVGT 120

Query: 123 KTDLVDKRQ---VSIEEGEAKARELNVMFI-----ETSAKAGFNIKALFRKIAAALPGME 174
             D+ D++Q      +  +    +     I       + +    +  L + I       +
Sbjct: 121 HLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFK 180

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  206 bits (528), Expect = 8e-69
 Identities = 50/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
            Y++   G   VGK+S++ RF+   F  +Y  T+   +  + +  +     LQ+ DT G 
Sbjct: 3   DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGS 61

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS--DVIIVLVGNKTDL 126
            +F ++    I      ++VY + SRQS        E++   +G    + I+LVGNK D 
Sbjct: 62  HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE 121

Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
              R+V   E EA AR     F+ETSAK   N+K LF+++ 
Sbjct: 122 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  207 bits (529), Expect = 1e-68
 Identities = 62/172 (36%), Positives = 95/172 (55%), Gaps = 11/172 (6%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE----------DRTVR 59
            K + LGD  VGKTS++ ++   KF++ +  T+GIDF  K +              + + 
Sbjct: 12  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71

Query: 60  LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS-DVIIV 118
           LQLWDTAG ERFRSL  ++ RD+   ++++D+ + QSFLN   W+ +++    S +  IV
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131

Query: 119 LVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           L GNK+DL D+R V  EE    A +  + + ETSA  G NI      +   +
Sbjct: 132 LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  206 bits (526), Expect = 1e-68
 Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 3/161 (1%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           + YK++ LG   VGK+++   F     D       G  +  +++ ++     L ++D   
Sbjct: 1   SVYKVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWE 58

Query: 68  QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGNKTDL 126
           Q+  R L    +      VIVY V  + SF   ++   ++R  R +D V I+LVGNK+DL
Sbjct: 59  QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL 118

Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           V  R+VS++EG A A   +  FIETSA    N++ALF  + 
Sbjct: 119 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  203 bits (520), Expect = 3e-67
 Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 2/164 (1%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
             +   K+V LG + VGKTS+  +F+  +F   Y  T+   + SK + L      L L D
Sbjct: 20  PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVD 78

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGNK 123
           TAGQ+ +  L  S+I      V+VY V S  SF       +++    G   V +VLVGNK
Sbjct: 79  TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNK 138

Query: 124 TDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
            DL  +R+V   EG+  A      F+E+SA+     + +F K+ 
Sbjct: 139 ADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVI 182

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  202 bits (517), Expect = 1e-66
 Identities = 52/173 (30%), Positives = 91/173 (52%), Gaps = 9/173 (5%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRF--MYDKFDNTYQATIGIDFLSKTMYLEDRTV 58
           ++  S    Y++V +G+Q VGK+++   F  ++D  D+  +     D   +T+ ++  + 
Sbjct: 29  ISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLG-EDTYERTLMVDGESA 87

Query: 59  R---LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD- 114
               L +W+  G+  +  L    ++     +IVY +  R SF   ++   ++R  R ++ 
Sbjct: 88  TIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED 145

Query: 115 VIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           + I+LVGNK+DLV  R+VS+ EG A A   +  FIETSA    N+K LF  I 
Sbjct: 146 IPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV 198

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  202 bits (515), Expect = 1e-66
 Identities = 54/160 (33%), Positives = 94/160 (58%), Gaps = 2/160 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
            +K++ +G   VGK+++  +FMYD+F   Y+ T    +  K + L+   V++ + DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQ 76

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGNKTDLV 127
           E + ++  +Y R     + V+ +   +SF  T  + E++   +  + V  +LVGNK+DL 
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136

Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           DKRQVS+EE + +A + NV ++ETSAK   N+  +F  + 
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 176

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  200 bits (512), Expect = 2e-66
 Identities = 56/163 (34%), Positives = 97/163 (59%), Gaps = 2/163 (1%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           +LA +K++ +G   VGK+++  +FMYD+F   Y+ T    +  K + L+   V++ + DT
Sbjct: 1   SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDT 59

Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGNKT 124
           AGQE + ++  +Y R     + V+ +   +SF  T  + E++   +  + V  +LVGNK+
Sbjct: 60  AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 119

Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           DL DKRQVS+EE + +A + NV ++ETSAK   N+  +F  + 
Sbjct: 120 DLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM 162

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  199 bits (508), Expect = 8e-66
 Identities = 56/162 (34%), Positives = 92/162 (56%), Gaps = 2/162 (1%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YK+V LG   VGK+++  +F+   F   Y  TI  DF  K + ++     L++ DTA
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTA 59

Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGNKTD 125
           G E+F S+   YI++    ++VY + ++QSF +     +++   +  + V ++LVGNK D
Sbjct: 60  GTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119

Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           L  +R+VS  EG A A E    F+ETSAK+   +  LF +I 
Sbjct: 120 LESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  199 bits (508), Expect = 1e-65
 Identities = 59/183 (32%), Positives = 92/183 (50%), Gaps = 5/183 (2%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           M         K+  LG +SVGK+S+  +F+  +F ++Y  TI   F +K + +  +   L
Sbjct: 1   MPQSK---SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHL 56

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVL 119
           QL DTAGQ+ +     +Y  D +  ++VY V S +SF        ++    G   + I+L
Sbjct: 57  QLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIML 116

Query: 120 VGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSST 179
           VGNK DL  +R +S EEG+A A   N  F+E+SAK       +FR+I      M+   S 
Sbjct: 117 VGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACSQ 176

Query: 180 KQE 182
            + 
Sbjct: 177 GKS 179

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  198 bits (506), Expect = 2e-65
 Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 4/165 (2%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++A Y++V LGD  VGKTS+ + F   +  + +   +G D   +T+ ++     L + DT
Sbjct: 1   SMALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDT 59

Query: 66  AGQERFRSLIP--SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGN 122
              E+        S ++  S  VIVY +A R SF + ++   ++R    +D V I+LVGN
Sbjct: 60  WEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGN 119

Query: 123 KTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           K DL   R+VS+EEG A A   +  FIETSA    N+  LF  + 
Sbjct: 120 KADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVV 164

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  209 bits (533), Expect = 2e-65
 Identities = 36/182 (19%), Positives = 79/182 (43%), Gaps = 12/182 (6%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL--------EDRTV 58
           L + K+  +GD   GKTS++ + + + FD     T G++ ++K            E +  
Sbjct: 39  LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC 98

Query: 59  RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIV 118
               WD  GQE   +    ++  SSV +++ D    ++  N   W+  +  + G    ++
Sbjct: 99  LFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RTDSNKHYWLRHIE-KYGGKSPVI 154

Query: 119 LVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSS 178
           +V NK D      +  ++   +   +   F   S K G  ++++ + + +A+   +++  
Sbjct: 155 VVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPDSIYG 214

Query: 179 TK 180
           T 
Sbjct: 215 TP 216

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  196 bits (501), Expect = 3e-64
 Identities = 56/198 (28%), Positives = 101/198 (51%), Gaps = 10/198 (5%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G   VGK+++  +FMYD+F   Y+ T    +  K + L+   V++ + DTAGQE
Sbjct: 15  HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQE 73

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGNKTDLVD 128
            + ++  +Y R     + V+ +   +SF  T  + E++   +  + V  +LVGNK+DL D
Sbjct: 74  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133

Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVDVN 188
           KRQVS+EE + +A + NV ++ETSAK   N+  +F  +   +          ++      
Sbjct: 134 KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI--------RARKMEDSKE 185

Query: 189 LKSSNTNTSQSQPQSGGC 206
                   S ++     C
Sbjct: 186 KNGKKKRKSLAKRIRERC 203

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  192 bits (490), Expect = 6e-63
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 3/168 (1%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           M P      +KLV +G   VGK+++  +F+   F + Y  TI  D  +K   ++    RL
Sbjct: 2   MDP-PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARL 59

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVL 119
            + DTAGQE F ++   Y+R     ++V+ +  RQSF    K   ++   +  D   +VL
Sbjct: 60  DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVL 119

Query: 120 VGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           VGNK DL  +RQV   E  A     +V + E SAK   N+   F ++ 
Sbjct: 120 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLV 167

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  190 bits (484), Expect = 9e-62
 Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 13/199 (6%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++V  G   VGK+S++ RF+   F +TY  TI   +  + +  +     LQ+ DT G  
Sbjct: 9   YRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSH 67

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVR--TERGSDVIIVLVGNKTDLV 127
           +F ++    I      ++V+ V S+QS        + +        D+ ++LVGNK D  
Sbjct: 68  QFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDE- 126

Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVDV 187
            +R+V   E +A A+E    F+ETSAK  +N+K LF+++              + ++   
Sbjct: 127 TQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLE---------TRRNMSLN 177

Query: 188 NLKSSNTNTSQSQPQSGGC 206
                +    ++    G C
Sbjct: 178 IDGKRSGKQKRTDRVKGKC 196

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  188 bits (481), Expect = 1e-61
 Identities = 53/168 (31%), Positives = 89/168 (52%), Gaps = 3/168 (1%)

Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
            P   L  YKLV +GD  VGK+++  +F    F + Y  TI  D   K   ++++   L 
Sbjct: 11  VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILD 69

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLV 120
           + DTAGQE F ++   Y+R     +IVY V  + SF +  ++ + +   +  +   ++LV
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129

Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAG-FNIKALFRKIA 167
            NK DL+  R+V+ ++G+  A + N+ +IETSAK    N+   F  + 
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  189 bits (481), Expect = 2e-61
 Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 7/168 (4%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRT---VRL 60
             +  Y++V +G+Q VGK+++   F       ++    +G D   +T+ ++  +   + L
Sbjct: 2   FGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILL 61

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVL 119
            +W+  G+  +  L    ++     +IVY +  R SF   ++   ++R  R ++ + I+L
Sbjct: 62  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119

Query: 120 VGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           VGNK+DLV  R+VS+ EG A A   +  FIETSA    N+K LF  I 
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIV 167

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  184 bits (471), Expect = 3e-60
 Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 3/162 (1%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F +    TI   +  K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTA 59

Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ E+++  + SD V +VLVGNK+D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119

Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           L   R V   + +  AR   + +IETSAK    ++  F  + 
Sbjct: 120 L-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  183 bits (466), Expect = 4e-59
 Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 3/165 (1%)

Query: 4   VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
              + +YKLV +G   VGK+++  + + + F + Y  TI   +  K + ++  T  L + 
Sbjct: 16  FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDIL 74

Query: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGN 122
           DTAGQE + ++   Y+R     + V+ + + +SF +   + E+++  + SD V +VLVGN
Sbjct: 75  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGN 134

Query: 123 KTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           K DL   R V  ++    A+   + FIETSAK    ++  F  + 
Sbjct: 135 KCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLV 178

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  181 bits (463), Expect = 5e-59
 Identities = 50/161 (31%), Positives = 92/161 (57%), Gaps = 3/161 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV LG   VGK+++  +F+   F   Y  TI   +  K + ++ +   L++ DTAG 
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGT 61

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGNKTDLV 127
           E+F ++   Y+++     +VY + ++ +F +     E++   + ++ V ++LVGNK DL 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121

Query: 128 DKRQVSIEEGEAKARE-LNVMFIETSAKAGFNIKALFRKIA 167
           D+R V  E+G+  AR+  N  F+E+SAK+  N+  +F  + 
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLV 162

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  182 bits (464), Expect = 8e-59
 Identities = 49/163 (30%), Positives = 86/163 (52%), Gaps = 3/163 (1%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
              +YKLV +G   VGK+++  + + + F + Y  TI   +  K + ++  T  L + DT
Sbjct: 1   GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDT 59

Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGNKT 124
           AGQE + ++   Y+R     + V+ + + +SF +   + E+++  + S+ V +VLVGNK 
Sbjct: 60  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKC 119

Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
           DL   R V  ++ +  AR   + FIETSAK    +   F  + 
Sbjct: 120 DL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  181 bits (462), Expect = 2e-58
 Identities = 54/161 (33%), Positives = 79/161 (49%), Gaps = 4/161 (2%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KL   G   VGK++++ RF+  +F   Y  T+   +      ++D  V +++ DTAGQ
Sbjct: 28  EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQ 86

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGNKTDLV 127
           E        ++R     V+VYD+  R SF         +   +    V ++LVGNK DL 
Sbjct: 87  EDTIQR-EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 145

Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGF-NIKALFRKIA 167
             RQVS EEGE  A EL   F E SA  G  NI  +F ++ 
Sbjct: 146 HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELC 186

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  179 bits (456), Expect = 1e-57
 Identities = 43/163 (26%), Positives = 82/163 (50%), Gaps = 6/163 (3%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +  L  LG +  GK+++  +F+  +F + Y   +   + S    ++ + V L++ DTA  
Sbjct: 21  EVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADL 79

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG---SDVIIVLVGNKTD 125
           +  R+    Y+  +   ++VY V SRQSF +++ ++E +          +  +L+GNK D
Sbjct: 80  DTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLD 138

Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGF-NIKALFRKIA 167
           +   RQV+  EG A A     +F E SA   F +++ +F +  
Sbjct: 139 MAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  167 bits (425), Expect = 5e-53
 Identities = 30/163 (18%), Positives = 70/163 (42%), Gaps = 11/163 (6%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + K+  +G+ S GK++++ R++   +     +  G  F  K + ++ ++  L + D  G 
Sbjct: 20  ELKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRF-KKEIVVDGQSYLLLIRDEGGP 77

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDL- 126
              +     +       V V+ +    SF     +   + + R +  + +VLVG +  + 
Sbjct: 78  PELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132

Query: 127 -VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALFRKIA 167
             + R +        + +L    + ET A  G N++ +F+ +A
Sbjct: 133 AANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVA 175

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  161 bits (409), Expect = 9e-51
 Identities = 33/169 (19%), Positives = 70/169 (41%), Gaps = 13/169 (7%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
            ++ + +L  LGD   GK+S+I RF+   +    + T   +   K M ++ +T  + + +
Sbjct: 3   RSIPELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTES-EQYKKEMLVDGQTHLVLIRE 60

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-----VIIVL 119
            AG    +     +   +   + V+ +    SF   ++   ++ + RG       + +V 
Sbjct: 61  EAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVG 115

Query: 120 VGNKTDLVDKRQVSIEEGEA-KARELNVMFIETSAKAGFNIKALFRKIA 167
             ++      R V      A  A      + ET A  G N+  +F+++A
Sbjct: 116 TQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVA 164

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  159 bits (405), Expect = 5e-50
 Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 7/165 (4%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD +VGKT ++  F   +    Y  T+  +F S  M  ++    L LWDTAGQE 
Sbjct: 25  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 83

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P    DS V ++ + V +R SF N +TKW  E++         VLVG K DL   
Sbjct: 84  YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK-HYIDTAKTVLVGLKVDLRKD 142

Query: 130 RQ--VSIEEGEAKARELN-VMFIETSAKAGFNIKALFRK-IAAAL 170
               V+ +EG+   ++L  V +IE S+ A   +  +F K +    
Sbjct: 143 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 187

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  148 bits (376), Expect = 1e-45
 Identities = 58/179 (32%), Positives = 91/179 (50%), Gaps = 15/179 (8%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           SA    K V +GD +VGKT ++  +  + F   Y  T+  +F S  + +   TV L LWD
Sbjct: 4   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWD 62

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P   R + V ++ + + S+ S+ N + KW+ E++      V IVLVG K
Sbjct: 63  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTK 121

Query: 124 TDLVDKRQ----------VSIEEGEAKARELN-VMFIETSAKAGFNIKALFRK-IAAAL 170
            DL D +Q          ++  +GE   + +    +IE S+K+  N+K +F   I   L
Sbjct: 122 LDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  147 bits (373), Expect = 5e-45
 Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 17/175 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQED 90

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           +  L P     + V +I + + S  SF N   KW  EVR     +  I+LVG K DL D 
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149

Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALFRK-IAAAL 170
                         ++  +G A A+E+  V ++E SA     +K +F + I A L
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  146 bits (369), Expect = 2e-44
 Identities = 55/177 (31%), Positives = 84/177 (47%), Gaps = 17/177 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++  F  D+F   Y  T+  +     + ++ + V L LWDTAGQ
Sbjct: 25  RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTAGQ 83

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLV 127
           E +  L P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK DL 
Sbjct: 84  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 142

Query: 128 D------------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALFRK-IAAAL 170
                        +  V  EEG   A  ++   ++E SAK    ++ +F     A L
Sbjct: 143 QDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  145 bits (369), Expect = 3e-44
 Identities = 56/172 (32%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           + +S     K V +GD +VGKT ++  +  +KF   Y  T+  D  S  + ++ + V L 
Sbjct: 2   SHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLG 60

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLV 120
           LWDTAGQE +  L P   R + + V+ + + S+ S+ N   KW+ E+R     +V IVLV
Sbjct: 61  LWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLV 119

Query: 121 GNKTDLVD--------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
           G K DL D           ++  +GE   +++    +IE S+K   N+KA+F
Sbjct: 120 GTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  145 bits (367), Expect = 5e-44
 Identities = 55/175 (31%), Positives = 88/175 (50%), Gaps = 17/175 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD   GKTS++  F    F  +Y  T+   +    + ++ + V L +WDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDD 94

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           +  L P +  D+SV ++ +DV S  SF N   +W  EV       V I++VG KTDL   
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN-HFCKKVPIIVVGCKTDLRKD 153

Query: 130 RQ------------VSIEEGEAKARELN-VMFIETSAKAGFNIKALFRK-IAAAL 170
           +             V+   G+  AR +  V ++E SA+   N+ A+F++    AL
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  142 bits (361), Expect = 3e-43
 Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 17/184 (9%)

Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           A  +     K V +GD +VGKTS++  +  + +   Y  T   D  S  + ++ R VRLQ
Sbjct: 13  AGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQ 71

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLV 120
           L DTAGQ+ F  L P    ++ + ++ + V S  SF N   KWV E+R        I+LV
Sbjct: 72  LCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR-CHCPKAPIILV 130

Query: 121 GNKTDLVDKRQ------------VSIEEGEAKARELN-VMFIETSAKAGFNIKALFRK-I 166
           G ++DL +  +            V  E  +  A E+    +IE SA    N+K +F   I
Sbjct: 131 GTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAI 190

Query: 167 AAAL 170
            A +
Sbjct: 191 VAGI 194

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  142 bits (359), Expect = 6e-43
 Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 17/181 (9%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
            ++ + KLV +GD + GKT ++  F  D+F   Y  T+  ++    + ++ + V L LWD
Sbjct: 21  QSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWD 79

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P    D+ V ++ + V S  S  N   KWV EV+     +V I+LV NK
Sbjct: 80  TAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANK 138

Query: 124 TDLVDKRQ------------VSIEEGEAKARELN-VMFIETSAKAGFNIKALFRK-IAAA 169
            DL                 V  ++G A A  +    ++E SAK    ++ +F     AA
Sbjct: 139 KDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAA 198

Query: 170 L 170
           L
Sbjct: 199 L 199

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  141 bits (357), Expect = 8e-43
 Identities = 44/178 (24%), Positives = 87/178 (48%), Gaps = 18/178 (10%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 7   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 65

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLV 127
             + ++ P    DS   +I +D++  ++  +   KW  E++ E   +  ++LVG K+DL 
Sbjct: 66  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSDLR 124

Query: 128 D------------KRQVSIEEGEAKARELN-VMFIETSAKAG-FNIKALFRK-IAAAL 170
                        +  VS ++G   A+++    +IE SA     +++ +F     A +
Sbjct: 125 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 182

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  137 bits (347), Expect = 2e-41
 Identities = 57/175 (32%), Positives = 86/175 (49%), Gaps = 17/175 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVD- 128
           +  L P     + V++I + + S  SF N   KW  EVR     +  I+LVG K DL D 
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 124

Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALFRK-IAAAL 170
                         ++  +G A A+E+  V ++E SA     +K +F + I A L
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  137 bits (347), Expect = 3e-41
 Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 17/185 (9%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA        K V +GD +VGKT ++  +  D F   Y  T+  D  + ++ +  +   L
Sbjct: 10  MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLL 68

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVL 119
            L+DTAGQE +  L P     + V +I + V +  SF N   +WV E++ E   +V  +L
Sbjct: 69  GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPNVPFLL 127

Query: 120 VGNKTDLVDKRQ------------VSIEEGEAKARELN-VMFIETSAKAGFNIKALFRK- 165
           +G + DL D  +            + +E+G+  A+E+    ++E SA     +K +F + 
Sbjct: 128 IGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA 187

Query: 166 IAAAL 170
           I A L
Sbjct: 188 IIAIL 192

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  134 bits (340), Expect = 5e-40
 Identities = 46/186 (24%), Positives = 90/186 (48%), Gaps = 19/186 (10%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           M P   + K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L
Sbjct: 21  MDPNQNV-KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIEL 78

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVL 119
            LWDT+G   + ++ P    DS   +I +D++  ++  +   KW  E++ E   +  ++L
Sbjct: 79  SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLL 137

Query: 120 VGNKTDLVD------------KRQVSIEEGEAKARELN-VMFIETSAKAG-FNIKALFRK 165
           VG K+DL              +  VS ++G   A+++    +IE SA     +++ +F  
Sbjct: 138 VGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 197

Query: 166 -IAAAL 170
              A +
Sbjct: 198 ATLACV 203

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  134 bits (338), Expect = 1e-39
 Identities = 49/185 (26%), Positives = 91/185 (49%), Gaps = 18/185 (9%)

Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           AP   +A+ KLV +GD   GKT+++     D +  TY  T+  ++ +  +  E++ V L 
Sbjct: 20  APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 78

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLV 120
           LWDT+G   + ++ P    DS   ++ +D++  ++  +   KW  E+  +      ++L+
Sbjct: 79  LWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL-DYCPSTRVLLI 137

Query: 121 GNKTDLVD------------KRQVSIEEGEAKARELN-VMFIETSAKAG-FNIKALFRK- 165
           G KTDL              +  +S E+G A A++L   +++E SA     +I ++FR  
Sbjct: 138 GCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 197

Query: 166 IAAAL 170
               L
Sbjct: 198 SMLCL 202

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  105 bits (262), Expect = 2e-27
 Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 17/176 (9%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
            +  L P     + V +I + + S  SF +   KW  EVR     +  I+LVG K DL D
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRD 273

Query: 129 KRQ------------VSIEEGEAKARELN-VMFIETSAKAGFNIKALFRK-IAAAL 170
            +             ++  +G A A+E+  V ++E SA     +K +F + I A L
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  101 bits (253), Expect = 1e-26
 Identities = 31/217 (14%), Positives = 68/217 (31%), Gaps = 66/217 (30%)

Query: 16  GDQSVGKTSIITRFMYDKFDNTYQATI----GIDFLSKTM--------------YLEDRT 57
           G   +GK+ +  RF+    D  +          DF  + +                +   
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 58  VRLQLW-------DTAGQERFRSLIPSYIRDSSV-------------------------- 84
            ++ +        D   Q    + +  YI+ ++                           
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 85  -----------AVIVYDVAS--RQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKR 130
                       ++  DV+    ++F +  K+V  +  +       IV+V  K D   +R
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER 214

Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
            +      A +++ N+  +ETSA++  N+   F  + 
Sbjct: 215 YIRDAHTFALSKK-NLQVVETSARSNVNVDLAFSTLV 250

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 75.2 bits (185), Expect = 4e-17
 Identities = 35/178 (19%), Positives = 66/178 (37%), Gaps = 23/178 (12%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-----------TIGIDFLSKTM-YLEDR 56
            +K+V+ G    GKT+ + +++Y K     +            T+  DFL   +  ++  
Sbjct: 14  NFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGF 72

Query: 57  TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD------VASRQSFLNTTKWVEEVRTE 110
             R  L+   GQ  + +     +R     V V D       A+ +S  N  + + E    
Sbjct: 73  KTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLT 132

Query: 111 RGSDVIIVLVGNKTDLVDKRQVSIEE-GEAKARELNVMFIETSAKAGFNIKALFRKIA 167
                I++ V NK DL     + +E        E     +E  A  G  +    ++++
Sbjct: 133 LDDVPIVIQV-NKRDL--PDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVS 187

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 75.4 bits (185), Expect = 2e-16
 Identities = 40/189 (21%), Positives = 70/189 (37%), Gaps = 22/189 (11%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
             KL+ +G    GK+S+ +    +          ATI ++            + L LWD 
Sbjct: 3   GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF---LGNMTLNLWDC 59

Query: 66  AGQERF-----RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTER--GSDVIIV 118
            GQ+ F             +   V + V+DV S +   +   + + ++  R    D  I 
Sbjct: 60  GGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIF 119

Query: 119 LVGNKTDLV--DKRQVSIEEGEAKAREL-------NVMFIETSAKAGFNIKALFRKIAAA 169
           ++ +K DLV  DKR+   +       E        N++   TS       KA  + + + 
Sbjct: 120 VLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSL 179

Query: 170 LPGMETLSS 178
           +P M    S
Sbjct: 180 IPNMSNHQS 188

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 68.5 bits (167), Expect = 1e-14
 Identities = 26/145 (17%), Positives = 49/145 (33%), Gaps = 14/145 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           K +++ +G +  GK+SI     +    N     ++T  I    K        V  Q+WD 
Sbjct: 20  KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIY---KDDISNSSFVNFQIWDF 76

Query: 66  AGQERFRSL---IPSYIRDSSVAVIVYDVASR--QSFLNTTKWVEEVRTERGSDVIIVLV 120
            GQ  F           R +   + V D      ++       V +           V +
Sbjct: 77  PGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFI 136

Query: 121 GNKTDLV--DKRQVSIEEGEAKARE 143
            +K D +  D +  +  +   +A +
Sbjct: 137 -HKVDGLSDDHKIETQRDIHQRAND 160

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 60.7 bits (148), Expect = 6e-12
 Identities = 35/175 (20%), Positives = 63/175 (36%), Gaps = 27/175 (15%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG    GKT+I+ R    +   T   TIG  F  +T  +  + ++ Q+WD  G 
Sbjct: 7   EMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVET--VTYKNLKFQVWDLGGL 61

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE--------RGSDVIIVLV 120
              R     Y  ++   + V D   R             ++E             I+V+ 
Sbjct: 62  TSIRPYWRCYYSNTDAVIYVVDSCDRDRI-------GISKSELVAMLEEEELRKAILVVF 114

Query: 121 GNKTDLVDKRQVSIEE-----GEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
            NK D+     ++  E     G    ++      +TSA  G  +      +   L
Sbjct: 115 ANKQDMEQA--MTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 167

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 60.7 bits (148), Expect = 8e-12
 Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 26/165 (15%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L  +G Q  GKT+ +      +F+     T+G  F  +   +    V ++LWD  GQ
Sbjct: 22  EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRK--ITKGNVTIKLWDIGGQ 77

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE--------RGSDVIIVLV 120
            RFRS+   Y R  S  V + D A ++         E  + E        +   + ++++
Sbjct: 78  PRFRSMWERYCRGVSAIVYMVDAADQEKI-------EASKNELHNLLDKPQLQGIPVLVL 130

Query: 121 GNKTDLVDKRQVS-IEEG----EAKARELNVMFIETSAKAGFNIK 160
           GNK DL        + E       + RE+       S K   NI 
Sbjct: 131 GNKRDLPGALDEKELIEKMNLSAIQDREICCY--SISCKEKDNID 173

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 60.3 bits (147), Expect = 9e-12
 Identities = 37/175 (21%), Positives = 63/175 (36%), Gaps = 27/175 (15%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K +++ LG  + GKTSI+ R        T   T+G     +T  L+ + +  ++WD  GQ
Sbjct: 22  KIRVLMLGLDNAGKTSILYRLHLGDVVTT-VPTVG--VNLET--LQYKNISFEVWDLGGQ 76

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE--------RGSDVIIVLV 120
              R     Y  D+   + V D   R             + E             ++++ 
Sbjct: 77  TGVRPYWRCYFSDTDAVIYVVDSTDRDRM-------GVAKHELYALLDEDELRKSLLLIF 129

Query: 121 GNKTDLVDKRQVSIEE-----GEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
            NK DL D    S  E     G +         +++S+K G  +      +   L
Sbjct: 130 ANKQDLPDA--ASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 59.9 bits (146), Expect = 1e-11
 Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 23/163 (14%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L+ LG  + GKT+I+ +F  +  D     T+G  F  KT  LE R  +L +WD  GQ
Sbjct: 18  ELRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLG--FNIKT--LEHRGFKLNIWDVGGQ 72

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE--------RGSDVIIVLV 120
           +  RS   +Y   +   + V D A RQ         ++ + E        R +   +++ 
Sbjct: 73  KSLRSYWRNYFESTDGLIWVVDSADRQRM-------QDCQRELQSLLVEERLAGATLLIF 125

Query: 121 GNKTDLVDKRQVS-IEE--GEAKARELNVMFIETSAKAGFNIK 160
            NK DL      + I+E       R  +      SA  G ++ 
Sbjct: 126 ANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 34/172 (19%), Positives = 63/172 (36%), Gaps = 23/172 (13%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            +++ LG    GKT+I+ R    +   T + TIG  F  +T  L  + ++L +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG--FNVET--LSYKNLKLNVWDLGGQT 73

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE--------RGSDVIIVLVG 121
             R     Y  D++  + V D   +               E           D  +++  
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRM-------STASKELHLMLQEEELQDAALLVFA 126

Query: 122 NKTDLVDKRQVS-IEE--GEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           NK D       S + +     + ++ +   + +SA  G  I      +   +
Sbjct: 127 NKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 33/158 (20%), Positives = 69/158 (43%), Gaps = 13/158 (8%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ +G  + GKT+I+ +    +   T   TIG  F  +T  +E + +   +WD  GQ
Sbjct: 29  QMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVET--VEYKNICFTVWDVGGQ 83

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLV 127
           ++ R L   Y +++   + V D   R+    +   ++++  E    D ++++  NK D+ 
Sbjct: 84  DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMP 143

Query: 128 DKRQVSIEE-----GEAKARELNVMFIETSAKAGFNIK 160
           +   + + E     G    R        T A  G  + 
Sbjct: 144 NA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 58.8 bits (143), Expect = 3e-11
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 27/165 (16%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG  + GKT+++ +   +   +    T G  F  K+  ++ +  +L +WD  GQ
Sbjct: 16  EVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--FNIKS--VQSQGFKLNVWDIGGQ 70

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE--------RGSDVIIVLV 120
            + R    SY  ++ + + V D A R+ F       EE   E        + S V +++ 
Sbjct: 71  RKIRPYWRSYFENTDILIYVIDSADRKRF-------EETGQELTELLEEEKLSCVPVLIF 123

Query: 121 GNKTDLVDKRQVS-IEEG----EAKARELNVMFIETSAKAGFNIK 160
            NK DL+     S I EG      + R   +     SA  G  ++
Sbjct: 124 ANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQ--SCSALTGEGVQ 166

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 58.8 bits (143), Expect = 3e-11
 Identities = 32/175 (18%), Positives = 66/175 (37%), Gaps = 27/175 (15%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++K++ +G  + GKT+I+ +F  ++  +T   TIG     +   +     R  +WD  GQ
Sbjct: 21  EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEE--IVINNTRFLMWDIGGQ 75

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE--------RGSDVIIVLV 120
           E  RS   +Y  ++   ++V D   R+            R E              +++ 
Sbjct: 76  ESLRSSWNTYYTNTEFVIVVVDSTDRERI-------SVTREELYKMLAHEDLRKAGLLIF 128

Query: 121 GNKTDLVDKRQVSIEE-----GEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
            NK D+ +   +++ E          ++         A  G  +      + + L
Sbjct: 129 ANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 58.4 bits (142), Expect = 4e-11
 Identities = 32/175 (18%), Positives = 66/175 (37%), Gaps = 27/175 (15%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++K++ +G  + GKT+I+ +F  ++  +T   TIG     +   +     R  +WD  GQ
Sbjct: 16  EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEE--IVINNTRFLMWDIGGQ 70

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE--------RGSDVIIVLV 120
           E  RS   +Y  ++   ++V D   R+            R E              +++ 
Sbjct: 71  ESLRSSWNTYYTNTEFVIVVVDSTDRERI-------SVTREELYKMLAHEDLRKAGLLIF 123

Query: 121 GNKTDLVDKRQVSIEE-----GEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
            NK D+ +   +++ E          ++         A  G  +      + + L
Sbjct: 124 ANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 59.0 bits (143), Expect = 5e-11
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 13/128 (10%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTM-YLEDRTVRLQLWDTAG 67
           +  ++F+G    GKT +  R +  ++ +T Q +I     S       +R   L L D  G
Sbjct: 7   QRAVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSIT--DSSAIYKVNNNRGNSLTLIDLPG 63

Query: 68  QERFR-SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEE-----VRTERGSDVIIVLV- 120
            E  R  L+  +   +   V V D A+ Q  +      E      + +    +   +L+ 
Sbjct: 64  HESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVA--EFLYQVLIDSMALKNSPSLLIA 121

Query: 121 GNKTDLVD 128
            NK D+  
Sbjct: 122 CNKQDIAM 129

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 57.6 bits (140), Expect = 6e-11
 Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 27/163 (16%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G  + GKT+I+ +    +   T   TIG  F  +T  +E + +   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVET--VEYKNISFTVWDVGGQDK 56

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE--------RGSDVIIVLVGN 122
            R L   Y +++   + V D   R+          E R E           D ++++  N
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERV-------NEAREELMRMLAEDELRDAVLLVFAN 109

Query: 123 KTDLVDKRQVSIEE-----GEAKARELNVMFIETSAKAGFNIK 160
           K DL +   ++  E     G    R  N     T A +G  + 
Sbjct: 110 KQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 150

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 20/126 (15%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             KLVFLG  + GKT+++     D+       T+     S+   L    +    +D  G 
Sbjct: 25  TGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLH--PTSEE--LTIAGMTFTTFDLGGH 79

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE--------RGSDVIIVLV 120
            + R +  +Y+   +  V + D A  +          E + E          ++V I+++
Sbjct: 80  IQARRVWKNYLPAINGIVFLVDCADHERL-------LESKEELDSLMTDETIANVPILIL 132

Query: 121 GNKTDL 126
           GNK D 
Sbjct: 133 GNKIDR 138

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 31/168 (18%), Positives = 63/168 (37%), Gaps = 29/168 (17%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-TIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           +  ++ LG  + GKT+II +       +     TIG  F  +    +  ++   ++D +G
Sbjct: 21  EVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEK--FKSSSLSFTVFDMSG 76

Query: 68  QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE----------RGSDVII 117
           Q R+R+L   Y ++    + V D + R             + E          +   + I
Sbjct: 77  QGRYRNLWEHYYKEGQAIIFVIDSSDRLRM-------VVAKEELDTLLNHPDIKHRRIPI 129

Query: 118 VLVGNKTDLVDKRQVS-IEEG----EAKARELNVMFIETSAKAGFNIK 160
           +   NK DL D      + +       K +  ++    + A  G  ++
Sbjct: 130 LFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHIC--ASDAIKGEGLQ 175

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 55.7 bits (135), Expect = 4e-10
 Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 20/126 (15%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             KL+FLG  + GKT+++     D+     Q T      S+   L    ++   +D  G 
Sbjct: 23  HGKLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWH--PTSEE--LAIGNIKFTTFDLGGH 77

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE--------RGSDVIIVLV 120
            + R L   Y  + +  V + D A  + F       +E R E           DV  V++
Sbjct: 78  IQARRLWKDYFPEVNGIVFLVDAADPERF-------DEARVELDALFNIAELKDVPFVIL 130

Query: 121 GNKTDL 126
           GNK D 
Sbjct: 131 GNKIDA 136

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 55.5 bits (134), Expect = 5e-10
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 23/131 (17%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
            ++  G Q+ GKTS++T    D    T   +     LS   Y       + L D  G  +
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE--PLSAADY---DGSGVTLVDFPGHVK 103

Query: 71  FRSLIPSYIRDSSVAV--IVYDVASRQSFLNTTKWVEEVRTE----------RGSDVIIV 118
            R  +  Y++  +  V  +++ V S        K +                   + I +
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVDS----TVDPKKLTTTAEFLVDILSITESSCENGIDI 159

Query: 119 LV-GNKTDLVD 128
           L+  NK++L  
Sbjct: 160 LIACNKSELFT 170

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 55.5 bits (134), Expect = 7e-10
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 19/132 (14%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
            +  ++  G Q+ GKTS++T    D    T   +     LS   Y       + L D  G
Sbjct: 11  YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE--PLSAADY---DGSGVTLVDFPG 64

Query: 68  QERFRSLIPSYIRDSSVAV--IVY--DVASRQSFLNTTK-------WVEEVRTERGSDVI 116
             + R  +  Y++  +  V  +++  D       L TT         + E   E G D++
Sbjct: 65  HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 124

Query: 117 IVLVGNKTDLVD 128
           I    NK++L  
Sbjct: 125 I--ACNKSELFT 134

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 50.8 bits (121), Expect = 6e-08
 Identities = 26/186 (13%), Positives = 59/186 (31%), Gaps = 25/186 (13%)

Query: 12  LVFLGDQSVGKTSIITRFMYDKFDNTY----QATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           ++ +G +  GK+SI  + ++           ++T        +       + L + +  G
Sbjct: 2   VLLMGVRRCGKSSIC-KVVFHNMQPLDTLYLESTSNPSLEHFSTL-----IDLAVMELPG 55

Query: 68  QERFRSL---IPSYIRDSSVAVIVYDVASR-QSFLNTTKWVEEVRTERGSDVIIVLVGNK 123
           Q  +           +     V V D      + +     + E   +    + I ++ +K
Sbjct: 56  QLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHK 115

Query: 124 TDLVD-----------KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPG 172
            D +             ++   E  E     + V F  TS       +A  R +   +P 
Sbjct: 116 VDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHSIYEAFSRIVQKLIPE 175

Query: 173 METLSS 178
           +  L +
Sbjct: 176 LSFLEN 181

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 20/126 (15%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ +G  + GKT+I+ +    +   T   TIG  F  +T  +E + +   +WD  GQ
Sbjct: 165 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVET--VEYKNISFTVWDVGGQ 219

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE--------RGSDVIIVLV 120
           ++ R L   Y +++   + V D   R+          E R E           D ++++ 
Sbjct: 220 DKIRPLWRHYFQNTQGLIFVVDSNDRERV-------NEAREELMRMLAEDELRDAVLLVF 272

Query: 121 GNKTDL 126
            NK DL
Sbjct: 273 ANKQDL 278

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 102 KWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKA 161
             V   + E     ++V+  NK D++ ++   ++       E  V  +  SA        
Sbjct: 131 DVVNLFK-EMEIPFVVVV--NKIDVLGEKAEELKGLYESRYEAKV--LLVSALQKKGFDD 185

Query: 162 LFRKIAAALP 171
           + + I+  LP
Sbjct: 186 IGKTISEILP 195

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 2/90 (2%)

Query: 82  SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKA 141
           + V  +V+ V  R       + V          V I+LVGNK D     + +++      
Sbjct: 85  ADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELL 144

Query: 142 RELNVMFIETSAKAGFNIKALFRKIAAALP 171
            E     +  SA     +  L   + A +P
Sbjct: 145 PEAEPRML--SALDERQVAELKADLLALMP 172

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 17/131 (12%)

Query: 58  VRLQLWDTAGQ-------ERF---RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV 107
              +L DTAG        E     RS     + ++ + + + D+ + +     T+  E  
Sbjct: 281 TMFRLTDTAGLREAGEEIEHEGIRRSR--MKMAEADLILYLLDLGTERLDDELTEIRELK 338

Query: 108 RTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
                +  + V   NK D             A A       I  SA  G  I  L + + 
Sbjct: 339 AAHPAAKFLTVA--NKLDRAANAD---ALIRAIADGTGTEVIGISALNGDGIDTLKQHMG 393

Query: 168 AALPGMETLSS 178
             +  ++ L  
Sbjct: 394 DLVKNLDKLHE 404

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 20/123 (16%)

Query: 58  VRLQLWDTAGQ-------ERF---RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV 107
           + L + DTAG        ER    R+     I  +   + + D  +    ++  +   E 
Sbjct: 52  MPLHIIDTAGLREASDEVERIGIERAW--QEIEQADRVLFMVD-GTTTDAVDPAEIWPEF 108

Query: 108 RTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
                + + I +V NK D+  +     E             I  SA+ G  +  L   + 
Sbjct: 109 IARLPAKLPITVVRNKADITGETLGMSEVNGHA-------LIRLSARTGEGVDVLRNHLK 161

Query: 168 AAL 170
            ++
Sbjct: 162 QSM 164

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 23/110 (20%)

Query: 23  TSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-ERFRSLIPSYIRD 81
             ++ +F+ +     Y       FL   +  E R         +     +         D
Sbjct: 76  EEMVQKFVEEVLRINY------KFLMSPIKTEQR-------QPSMMTRMYIEQRDRLYND 122

Query: 82  SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVG----NKTDLV 127
           + V    Y+V+  Q +L   + + E+R  +     +++ G     KT + 
Sbjct: 123 NQV-FAKYNVSRLQPYLKLRQALLELRPAKN----VLIDGVLGSGKTWVA 167

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 26/130 (20%)

Query: 58  VRLQLWDTAGQ--------ERF---RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEE 106
           +  ++ DTAG         ER    R+L    I  + + + V D         ++   EE
Sbjct: 291 ILFRIVDTAGVRSETNDLVERLGIERTL--QEIEKADIVLFVLD--------ASSPLDEE 340

Query: 107 VRT--ERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFR 164
            R   ER  +   ++V NK D+V+K     EE        +   ++ SA  G  ++ L  
Sbjct: 341 DRKILERIKNKRYLVVINKVDVVEKIN---EEEIKNKLGTDRHMVKISALKGEGLEKLEE 397

Query: 165 KIAAALPGME 174
            I      + 
Sbjct: 398 SIYRETQEIF 407

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308

 Score = 39.4 bits (93), Expect = 4e-04
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 117 IVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIE---TSAKAGFNIKALFRKIAAALP 171
           +++V NK D +   +  +     +  + +    E    SA  G N+  L + I   LP
Sbjct: 125 VIVVINKIDKIGPAKN-VLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP 181

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 45/193 (23%), Positives = 74/193 (38%), Gaps = 17/193 (8%)

Query: 3   PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQ 61
           PV  L    +V  G  +VGK++++      K +  +Y  T     +      ED   R Q
Sbjct: 161 PVVDLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVG---QFEDGYFRYQ 217

Query: 62  LWDTAG------QERFRSLIPSYIRDSSV-AVIVYDV-ASRQSFLNTTKWVEEVRTERG- 112
           + DT G       ER      + +    +  +I+Y    S        + +       G 
Sbjct: 218 IIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGE 277

Query: 113 -SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL- 170
             D+  ++V NK D+ D+  +   E   K + LN + I  SA  G  I  +  +I   L 
Sbjct: 278 FKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKI--SALKGTGIDLVKEEIIKTLR 335

Query: 171 PGMETLSSTKQED 183
           P  E ++  K E 
Sbjct: 336 PLAEKVAREKIER 348

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Length = 165

 Score = 38.2 bits (90), Expect = 5e-04
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 110 ERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA 169
           E G+++++ L  NK DL     + I+  +   + L V  +  SA     I+ L + I+ A
Sbjct: 106 EMGANLLLAL--NKMDLAKSLGIEIDV-DKLEKILGVKVVPLSAAKKMGIEELKKAISIA 162

Query: 170 L 170
           +
Sbjct: 163 V 163

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462

 Score = 38.6 bits (91), Expect = 7e-04
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 26/133 (19%)

Query: 58  VRLQLWDTAGQ-------ERF---RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV 107
           + +Q+ DTAG        E+    RS        + + ++  D          T W    
Sbjct: 272 IPVQVLDTAGIRETSDQVEKIGVERSR--QAANTADLVLLTIDA--------ATGWTTGD 321

Query: 108 RT--ERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK 165
           +   E+     ++LV NK DLV+K+ ++  E      ++    + T+A     I +L   
Sbjct: 322 QEIYEQVKHRPLILVMNKIDLVEKQLITSLEYPENITQI----VHTAAAQKQGIDSLETA 377

Query: 166 IAAALPGMETLSS 178
           I   +   +  ++
Sbjct: 378 ILEIVQTGKVQAA 390

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Length = 188

 Score = 37.9 bits (89), Expect = 7e-04
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 110 ERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA 169
           E G+++++ L  NK DL     + I+  +   + L V  +  SA     I+ L + I+ A
Sbjct: 110 EMGANLLLAL--NKMDLAKSLGIEIDV-DKLEKILGVKVVPLSAAKKMGIEELKKAISIA 166

Query: 170 LPG 172
           +  
Sbjct: 167 VKD 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	208
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.98
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.98
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.97
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.96
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.96
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.96
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.95
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.95
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.95
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.94
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.94
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.94
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.94
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.94
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.93
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.93
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.93
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.93
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.92
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.91
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.91
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.91
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.91
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.91
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.9
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.9
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.9
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.9
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.89
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.89
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.89
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.89
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.89
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.89
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.89
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.88
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.88
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.88
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.88
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.88
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.88
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.88
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.88
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.88
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.88
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.87
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.87
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.86
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.86
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.86
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.86
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.86
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.86
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.86
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.86
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.85
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.85
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.85
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.85
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.84
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.84
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.83
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.83
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.83
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.83
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.82
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.82
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.82
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.81
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.8
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.78
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.78
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.77
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.77
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.77
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.76
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.76
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.76
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.76
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.76
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.75
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.75
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.75
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.74
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.7
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.7
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.69
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.67
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.64
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.64
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.63
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.63
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.6
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.59
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.58
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.58
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.58
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.54
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.53
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.5
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.43
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.42
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.38
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.38
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.29
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.14
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.04
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.03
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.02
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.95
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.94
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.92
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.92
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.9
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.87
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.57
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.52
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.51
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.44
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.43
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.32
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.26
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.15
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.06
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.02
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.88
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.82
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.82
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.74
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.4
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.32
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.29
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.27
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.25
2xxa_A	433	Signal recognition particle protein; protein trans	97.21
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.21
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.17
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.13
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.12
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.11
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.11
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.11
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.1
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.09
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.08
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.06
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.05
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.04
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.03
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.01
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.98
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.98
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.96
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.96
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.92
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.92
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.89
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.89
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.88
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.88
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.87
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.86
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.86
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.86
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.85
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.85
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.84
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.84
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.83
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.83
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.83
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.81
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.81
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.81
1g6h_A	257	High-affinity branched-chain amino acid transport	96.8
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.8
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.8
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.78
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.78
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.78
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.78
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.77
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.76
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.76
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.76
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.76
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.75
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.75
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.74
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.74
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.74
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.74
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.73
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.72
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.72
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.72
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.72
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.71
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.71
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.71
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.7
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.67
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.67
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.67
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.64
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.64
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.63
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.62
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.62
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.61
1via_A	175	Shikimate kinase; structural genomics, transferase	96.61
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.61
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.61
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.6
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.6
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.6
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.6
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.59
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.59
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.59
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.59
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.57
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.57
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.56
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.55
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.55
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.55
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.55
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.54
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.53
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.53
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.53
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.51
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.5
3co5_A	143	Putative two-component system transcriptional RES	96.5
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.49
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.49
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.49
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.49
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.47
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.45
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.45
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.45
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.43
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.42
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.41
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.41
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.4
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.4
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.39
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.39
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.38
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.37
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.37
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.37
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.36
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.36
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.36
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.35
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.34
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.34
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.33
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.33
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.32
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.31
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.31
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.3
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.29
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.27
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.25
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.25
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.24
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.24
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.24
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.24
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.23
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.22
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.22
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.22
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.19
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.19
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.18
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.17
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.16
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.11
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.11
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.1
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.1
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.09
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.09
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.07
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.07
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.07
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.05
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.03
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.0
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.0
2og2_A	359	Putative signal recognition particle receptor; nuc	95.98
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.97
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.97
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.96
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.92
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.91
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.9
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.87
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.87
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.85
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.83
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.82
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.82
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.81
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.79
3bos_A	242	Putative DNA replication factor; P-loop containing	95.77
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.77
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.75
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.75
2cvh_A	220	DNA repair and recombination protein RADB; filamen	95.74
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.7
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.7
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.69
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.68
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.66
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.65
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.65
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.64
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.6
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.57
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.55
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.54
3cwq_A	209	Para family chromosome partitioning protein; alpha	95.54
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.51
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.51
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.5
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	95.48
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.47
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.46
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.45
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.45
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.44
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.42
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.39
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.39
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.37
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.36
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.36
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.31
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.3
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.28
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.25
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.23
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.23
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	95.22
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.18
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.18
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.17
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.16
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.15
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.15
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.13
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.11
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.09
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.08
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.07
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.03
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.02
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.01
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.01
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.0
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	94.98
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	94.97
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	94.96
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	94.92
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	94.89
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	94.87
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	94.85
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	94.83
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	94.79
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	94.78
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	94.78
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.77
3uc9_A	233	Increased recombination centers protein 6; rossman	94.73
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	94.66
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	94.62
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	94.61
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.58
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	94.57
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	94.55
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	94.55
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	94.47
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	94.47
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	94.46
2qgz_A	308	Helicase loader, putative primosome component; str	94.46
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	94.46
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	94.45

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=7.3e-46  Score=273.91  Aligned_cols=199  Identities=74%  Similarity=1.180  Sum_probs=147.7

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      +++++||+|+|.+|||||||+++|+.+.|...+.+|++.++....+..++..+.+.||||+|++.|..++..|++++|++
T Consensus        10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~   89 (216)
T 4dkx_A           10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA   89 (216)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred             CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      ++|||++++++|+.+..|+..+......++|++||+||.|+.+.+++...++++++.++++.|+++||++|.||+++|+.
T Consensus        90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~  169 (216)
T 4dkx_A           90 VVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR  169 (216)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence            99999999999999999999999888888999999999999888899999999999999999999999999999999999


Q ss_pred             HHHHcCCCccCCcccccccccccccCCCCCCCCCCCCCCCCcC
Q 028466          166 IAAALPGMETLSSTKQEDLVDVNLKSSNTNTSQSQPQSGGCAC  208 (208)
Q Consensus       166 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  208 (208)
                      |.+.+................+.+...    .+.+.++++|||
T Consensus       170 i~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~C~C  208 (216)
T 4dkx_A          170 VAAALPGMESTQDRSREDMIDIKLEKP----QEQPVSEGGCSC  208 (216)
T ss_dssp             HHHHC--------------------------------------
T ss_pred             HHHHHHhhhcccccccccccccccCCC----CCCCCCCCCCce
Confidence            999998766655554444343333322    233667788888

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=5.7e-38  Score=230.46  Aligned_cols=173  Identities=40%  Similarity=0.633  Sum_probs=155.9

Q ss_pred             CCCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhc
Q 028466            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (208)
Q Consensus         1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   80 (208)
                      |++ +..+.+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++
T Consensus         1 M~~-~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   79 (206)
T 2bcg_Y            1 MNS-EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYR   79 (206)
T ss_dssp             --C-CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGT
T ss_pred             CCc-ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhcc
Confidence            554 3456799999999999999999999999998888888888888888888988889999999999999999999999


Q ss_pred             cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466           81 DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK  160 (208)
Q Consensus        81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (208)
                      .+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.++....++..++...+++++++||+++.|++
T Consensus        80 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  159 (206)
T 2bcg_Y           80 GSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVE  159 (206)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHH
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence            99999999999999999999999999887766789999999999998777788888899999999999999999999999


Q ss_pred             HHHHHHHHHcCCCc
Q 028466          161 ALFRKIAAALPGME  174 (208)
Q Consensus       161 ~~~~~l~~~~~~~~  174 (208)
                      ++|++|.+.+.+..
T Consensus       160 ~l~~~l~~~i~~~~  173 (206)
T 2bcg_Y          160 DAFLTMARQIKESM  173 (206)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999886543

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=7.1e-37  Score=224.57  Aligned_cols=172  Identities=38%  Similarity=0.649  Sum_probs=148.4

Q ss_pred             CCCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhc
Q 028466            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (208)
Q Consensus         1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   80 (208)
                      |+. ...+.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++
T Consensus         1 M~~-~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   79 (207)
T 1vg8_A            1 MTS-RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYR   79 (207)
T ss_dssp             -------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGT
T ss_pred             CCc-ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHh
Confidence            444 3456799999999999999999999999988888888888888888888888889999999999999999999999


Q ss_pred             cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC----CCCeEEEEEeCCCCcCccCcCHHHHHHHHH-HcCCeEEEeecCC
Q 028466           81 DSSVAVIVYDVASRQSFLNTTKWVEEVRTERG----SDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-ELNVMFIETSAKA  155 (208)
Q Consensus        81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~  155 (208)
                      .+|++|+|||++++.++..+..|+..+.....    .+.|+++|+||+|+. .......++..++. ..++.++++||++
T Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  158 (207)
T 1vg8_A           80 GADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKE  158 (207)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTT
T ss_pred             CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCC
Confidence            99999999999999999999999988876653    468999999999996 45566778888887 5678999999999


Q ss_pred             CCCHHHHHHHHHHHcCCCc
Q 028466          156 GFNIKALFRKIAAALPGME  174 (208)
Q Consensus       156 ~~~v~~~~~~l~~~~~~~~  174 (208)
                      +.|++++|++|.+.+.+.+
T Consensus       159 g~gi~~l~~~l~~~~~~~~  177 (207)
T 1vg8_A          159 AINVEQAFQTIARNALKQE  177 (207)
T ss_dssp             TBSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhc
Confidence            9999999999999986543

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-35  Score=221.07  Aligned_cols=172  Identities=34%  Similarity=0.633  Sum_probs=146.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            46799999999999999999999999988888888888888888888888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      +|||++++.+++.+..|+..+......+.|++||+||+|+.+.+++...++..++...++.++++||+++.|++++|++|
T Consensus        91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  170 (223)
T 3cpj_B           91 IVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL  170 (223)
T ss_dssp             EEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999987766679999999999998777788888999999999999999999999999999999


Q ss_pred             HHHcCCCccCCc
Q 028466          167 AAALPGMETLSS  178 (208)
Q Consensus       167 ~~~~~~~~~~~~  178 (208)
                      .+.+.+......
T Consensus       171 ~~~i~~~~~~~~  182 (223)
T 3cpj_B          171 INTIYQKVSKHQ  182 (223)
T ss_dssp             HHHHTTCC----
T ss_pred             HHHHHHHhhhcc
Confidence            999877655544

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=1.7e-35  Score=217.00  Aligned_cols=167  Identities=34%  Similarity=0.574  Sum_probs=148.7

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      .++.++|+|+|.+|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   89 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   89 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence            46789999999999999999999999988777777766444 45567788888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHH
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFR  164 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~  164 (208)
                      ++|||+++++++..+..|+..+..... .+.|+++|+||+|+.+..+....++..++..+++.++++||+++.|++++|+
T Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  169 (206)
T 2bov_A           90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF  169 (206)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999999999998887653 5789999999999987777888899999999999999999999999999999


Q ss_pred             HHHHHcCCC
Q 028466          165 KIAAALPGM  173 (208)
Q Consensus       165 ~l~~~~~~~  173 (208)
                      +|.+.+.+.
T Consensus       170 ~l~~~i~~~  178 (206)
T 2bov_A          170 DLMREIRAR  178 (206)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            999988653

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=1.5e-34  Score=207.75  Aligned_cols=171  Identities=42%  Similarity=0.740  Sum_probs=153.3

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (208)
                      ....+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus         7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   86 (181)
T 2efe_B            7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   86 (181)
T ss_dssp             ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred             CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence            34567899999999999999999999999988877888888888888888888889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466           84 VAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF  163 (208)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (208)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+..+....+++.++...++.++++||+++.|++++|
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  166 (181)
T 2efe_B           87 AAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIF  166 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            99999999999999999999999988766789999999999998777778889999999999999999999999999999


Q ss_pred             HHHHHHcCCCc
Q 028466          164 RKIAAALPGME  174 (208)
Q Consensus       164 ~~l~~~~~~~~  174 (208)
                      ++|.+.+.+.+
T Consensus       167 ~~l~~~~~~~~  177 (181)
T 2efe_B          167 YEIARRLPRVQ  177 (181)
T ss_dssp             HHHHHTCC---
T ss_pred             HHHHHHHHhcC
Confidence            99999986544

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=1.6e-34  Score=207.08  Aligned_cols=170  Identities=35%  Similarity=0.649  Sum_probs=153.8

Q ss_pred             CCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhcc
Q 028466            2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD   81 (208)
Q Consensus         2 ~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   81 (208)
                      +|.+..+.+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+|||||++.+...+..++++
T Consensus         8 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   87 (179)
T 1z0f_A            8 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRG   87 (179)
T ss_dssp             ---CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHT
T ss_pred             CccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhcc
Confidence            34455678999999999999999999999999887778888888888888888888899999999999999999999999


Q ss_pred             CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHH
Q 028466           82 SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKA  161 (208)
Q Consensus        82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~  161 (208)
                      +|++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.++....++++++..+++.++++||+++.|+++
T Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  167 (179)
T 1z0f_A           88 AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVED  167 (179)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             CCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999999999998887767899999999999987777888899999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q 028466          162 LFRKIAAALP  171 (208)
Q Consensus       162 ~~~~l~~~~~  171 (208)
                      +|++|.+.+.
T Consensus       168 l~~~l~~~i~  177 (179)
T 1z0f_A          168 AFLEAAKKIY  177 (179)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHh
Confidence            9999998875

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=2.2e-34  Score=204.59  Aligned_cols=167  Identities=41%  Similarity=0.796  Sum_probs=152.9

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      .++.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            35689999999999999999999999988877788888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      |+|+|++++++++.+..|+..+......+.|+++|+||+|+.+.+.....++..++...++.++++||+++.|+++++++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  162 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988776678999999999999777777788889999999999999999999999999999


Q ss_pred             HHHHcCC
Q 028466          166 IAAALPG  172 (208)
Q Consensus       166 l~~~~~~  172 (208)
                      |.+.+.+
T Consensus       163 i~~~~~~  169 (170)
T 1r2q_A          163 IAKKLPK  169 (170)
T ss_dssp             HHHTSCC
T ss_pred             HHHHHhh
Confidence            9988753

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=3.3e-34  Score=203.64  Aligned_cols=166  Identities=44%  Similarity=0.787  Sum_probs=151.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      ++.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++|
T Consensus         1 v~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   80 (170)
T 1ek0_A            1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL   80 (170)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence            35799999999999999999999999988878888888888888888888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc---cCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK---RQVSIEEGEAKARELNVMFIETSAKAGFNIKALF  163 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (208)
                      +|+|++++.++..+..|+..+......+.|+++|+||+|+.+.   .++...+.+.++...++.++++||+++.|++++|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (170)
T 1ek0_A           81 VVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF  160 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred             EEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999999988777678999999999999765   5677788888999999999999999999999999


Q ss_pred             HHHHHHcCC
Q 028466          164 RKIAAALPG  172 (208)
Q Consensus       164 ~~l~~~~~~  172 (208)
                      ++|.+.+.+
T Consensus       161 ~~l~~~i~~  169 (170)
T 1ek0_A          161 LGIGEKIPL  169 (170)
T ss_dssp             HHHHTTSCC
T ss_pred             HHHHHHHhh
Confidence            999988753

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=2.8e-34  Score=205.76  Aligned_cols=167  Identities=83%  Similarity=1.259  Sum_probs=153.3

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      +++.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus        11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   90 (179)
T 2y8e_A           11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA   90 (179)
T ss_dssp             -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            35779999999999999999999999998888888888888888888999888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      |+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.++....+...++...++.++++||+++.|+++++++
T Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  170 (179)
T 2y8e_A           91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR  170 (179)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988776678999999999999877778888889999999999999999999999999999


Q ss_pred             HHHHcCC
Q 028466          166 IAAALPG  172 (208)
Q Consensus       166 l~~~~~~  172 (208)
                      |.+.+.+
T Consensus       171 l~~~~~~  177 (179)
T 2y8e_A          171 VAAALPG  177 (179)
T ss_dssp             HHHTCC-
T ss_pred             HHHHHhh
Confidence            9998854

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=3.7e-34  Score=207.80  Aligned_cols=169  Identities=38%  Similarity=0.695  Sum_probs=150.2

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (208)
                      ....+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   95 (191)
T 2a5j_A           16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA   95 (191)
T ss_dssp             CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence            34467899999999999999999999999988777888888888888888888889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466           84 VAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF  163 (208)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (208)
                      ++|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+++...+++.++...++.++++||+++.|++++|
T Consensus        96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  175 (191)
T 2a5j_A           96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF  175 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999987766789999999999998777788888999999999999999999999999999


Q ss_pred             HHHHHHcCC
Q 028466          164 RKIAAALPG  172 (208)
Q Consensus       164 ~~l~~~~~~  172 (208)
                      ++|.+.+.+
T Consensus       176 ~~l~~~i~~  184 (191)
T 2a5j_A          176 INTAKEIYR  184 (191)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988753

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=6.3e-34  Score=207.03  Aligned_cols=167  Identities=39%  Similarity=0.680  Sum_probs=155.8

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   93 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   93 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence            35699999999999999999999999998888899998999899999998889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+.......+.+.++..++++++++||+++.|++++|++|
T Consensus        94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  173 (196)
T 3tkl_A           94 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM  173 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988877789999999999998888888889999999999999999999999999999999


Q ss_pred             HHHcCCC
Q 028466          167 AAALPGM  173 (208)
Q Consensus       167 ~~~~~~~  173 (208)
                      .+.+.+.
T Consensus       174 ~~~i~~~  180 (196)
T 3tkl_A          174 AAEIKKR  180 (196)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988543

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=8.9e-34  Score=201.53  Aligned_cols=167  Identities=40%  Similarity=0.728  Sum_probs=153.4

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      .++.+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            35679999999999999999999999998888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      |+|||++++.++..+..|+..+........|+++|+||+|+.+.++....+...++...++.++++||+++.|+++++++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  162 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            99999999999999999999998876678999999999999877778888899999999999999999999999999999


Q ss_pred             HHHHcCC
Q 028466          166 IAAALPG  172 (208)
Q Consensus       166 l~~~~~~  172 (208)
                      |.+.+.+
T Consensus       163 i~~~i~~  169 (170)
T 1z0j_A          163 ISRRIPS  169 (170)
T ss_dssp             HHHHCCC
T ss_pred             HHHHHhc
Confidence            9998753

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=2.6e-34  Score=207.43  Aligned_cols=167  Identities=37%  Similarity=0.640  Sum_probs=153.6

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      ..+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++++|++
T Consensus         7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   86 (186)
T 2bme_A            7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   86 (186)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence            35679999999999999999999999999888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      |+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.....++..++...++.++++||+++.|++++|++
T Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  166 (186)
T 2bme_A           87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ  166 (186)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999888776678999999999999777778888899999999999999999999999999999


Q ss_pred             HHHHcCC
Q 028466          166 IAAALPG  172 (208)
Q Consensus       166 l~~~~~~  172 (208)
                      |.+.+.+
T Consensus       167 l~~~~~~  173 (186)
T 2bme_A          167 CARKILN  173 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988854

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.2e-34  Score=207.74  Aligned_cols=170  Identities=41%  Similarity=0.733  Sum_probs=152.4

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (208)
                      ....+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus        18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   97 (192)
T 2fg5_A           18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA   97 (192)
T ss_dssp             ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred             cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence            33467899999999999999999999999988777888888888888888888889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466           84 VAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF  163 (208)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (208)
                      ++|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.++....++++++...++.++++||+++.|+++++
T Consensus        98 ~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  177 (192)
T 2fg5_A           98 AAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELF  177 (192)
T ss_dssp             EEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence            99999999999999999999999887766679999999999997767778889999999999999999999999999999


Q ss_pred             HHHHHHcCCC
Q 028466          164 RKIAAALPGM  173 (208)
Q Consensus       164 ~~l~~~~~~~  173 (208)
                      ++|.+.+.+.
T Consensus       178 ~~l~~~i~~~  187 (192)
T 2fg5_A          178 QGISRQIPPL  187 (192)
T ss_dssp             HHHHHTCC--
T ss_pred             HHHHHHHHhh
Confidence            9999988643

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=4.1e-35  Score=211.20  Aligned_cols=166  Identities=41%  Similarity=0.717  Sum_probs=123.9

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++|
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   85 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence            45799999999999999999999998888778888888888888888888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+.+.+++...+++.++..++++++++||+++.|++++|++|
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  165 (183)
T 2fu5_C           86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL  165 (183)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999887766679999999999998777778889999999999999999999999999999999


Q ss_pred             HHHcCC
Q 028466          167 AAALPG  172 (208)
Q Consensus       167 ~~~~~~  172 (208)
                      .+.+.+
T Consensus       166 ~~~i~~  171 (183)
T 2fu5_C          166 ARDIKA  171 (183)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988854

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5e-34  Score=208.84  Aligned_cols=166  Identities=39%  Similarity=0.670  Sum_probs=153.1

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.+||+|+|.+|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++|
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  103 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI  103 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            45799999999999999999999999998888888888888888889998889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+.+.+++...+++.++...++.++++||+++.|++++|++|
T Consensus       104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  183 (201)
T 2ew1_A          104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL  183 (201)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999887766789999999999998777788888899999999999999999999999999999


Q ss_pred             HHHcCC
Q 028466          167 AAALPG  172 (208)
Q Consensus       167 ~~~~~~  172 (208)
                      .+.+.+
T Consensus       184 ~~~i~~  189 (201)
T 2ew1_A          184 ACRLIS  189 (201)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988854

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=2.9e-34  Score=206.39  Aligned_cols=169  Identities=34%  Similarity=0.469  Sum_probs=150.8

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (208)
                      +..+.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus         2 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   80 (181)
T 3t5g_A            2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING   80 (181)
T ss_dssp             CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred             CCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence            446789999999999999999999999888888888877666 6677788888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466           85 AVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF  163 (208)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (208)
                      +++|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+...+++.++..+++.++++||+++.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  160 (181)
T 3t5g_A           81 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF  160 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Confidence            9999999999999999999988876643 578999999999998888888999999999999999999999999999999


Q ss_pred             HHHHHHcCCCc
Q 028466          164 RKIAAALPGME  174 (208)
Q Consensus       164 ~~l~~~~~~~~  174 (208)
                      ++|.+.+.+..
T Consensus       161 ~~l~~~~~~~~  171 (181)
T 3t5g_A          161 RRIILEAEKMD  171 (181)
T ss_dssp             HHHHHHHHTC-
T ss_pred             HHHHHHHHHhc
Confidence            99999986554

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=2.2e-34  Score=210.73  Aligned_cols=166  Identities=42%  Similarity=0.730  Sum_probs=144.5

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++|
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI  106 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence            45799999999999999999999999988777888888888888888888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~  165 (208)
                      +|||++++++++.+..|+..+......+.|++||+||+|+.+.+.+...++++++...++ .++++||+++.|++++|++
T Consensus       107 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  186 (201)
T 2hup_A          107 LAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLR  186 (201)
T ss_dssp             EEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999999877667899999999999987777888899999999999 9999999999999999999


Q ss_pred             HHHHcCC
Q 028466          166 IAAALPG  172 (208)
Q Consensus       166 l~~~~~~  172 (208)
                      |.+.+.+
T Consensus       187 l~~~i~~  193 (201)
T 2hup_A          187 VATELIM  193 (201)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998853

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=1.1e-33  Score=204.99  Aligned_cols=167  Identities=38%  Similarity=0.704  Sum_probs=152.3

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (208)
                      .....+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   97 (189)
T 2gf9_A           18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG   97 (189)
T ss_dssp             TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence            33467999999999999999999999999887778888888888888888888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHH
Q 028466           85 AVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFR  164 (208)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~  164 (208)
                      +|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.....+++.++..+++.++++||+++.|++++|+
T Consensus        98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  177 (189)
T 2gf9_A           98 FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFE  177 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999999998877666799999999999987777778889999999999999999999999999999


Q ss_pred             HHHHHcC
Q 028466          165 KIAAALP  171 (208)
Q Consensus       165 ~l~~~~~  171 (208)
                      +|.+.+.
T Consensus       178 ~l~~~i~  184 (189)
T 2gf9_A          178 RLVDVIC  184 (189)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998874

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=3.1e-34  Score=204.02  Aligned_cols=165  Identities=39%  Similarity=0.688  Sum_probs=144.8

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   83 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence            46799999999999999999999999988778888888888888888888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      +|+|++++++++.+..|+..+......+.|+++|+||+|+.+.++....+++.++...++.++++||+++.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  163 (170)
T 1z08_A           84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            99999999999999999988877665679999999999998777788889999999999999999999999999999999


Q ss_pred             HHHcC
Q 028466          167 AAALP  171 (208)
Q Consensus       167 ~~~~~  171 (208)
                      .+.+.
T Consensus       164 ~~~~~  168 (170)
T 1z08_A          164 CKRMI  168 (170)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98774

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.8e-34  Score=203.31  Aligned_cols=169  Identities=40%  Similarity=0.678  Sum_probs=144.7

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (208)
                      ...+.+||+|+|.+|+|||||+++|+++.+. ..+.++.+.++....+..++..+.+.+|||||++.+...+..+++++|
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   85 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   85 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence            3467899999999999999999999998885 466788888888877788888889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466           84 VAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF  163 (208)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (208)
                      ++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+..+....+.+.++..+++.++++||+++.|++++|
T Consensus        86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  165 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF  165 (180)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999887766789999999999998777778888899999999999999999999999999


Q ss_pred             HHHHHHcCCC
Q 028466          164 RKIAAALPGM  173 (208)
Q Consensus       164 ~~l~~~~~~~  173 (208)
                      ++|.+.+.+.
T Consensus       166 ~~l~~~~~~~  175 (180)
T 2g6b_A          166 TAIAKELKRR  175 (180)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHHH
Confidence            9999988543

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=6.3e-34  Score=204.28  Aligned_cols=167  Identities=31%  Similarity=0.479  Sum_probs=148.8

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (208)
                      ..++.+||+|+|.+|+|||||+++|+++.+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   83 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   83 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence            4467899999999999999999999999888777777776554 667788888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466           85 AVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF  163 (208)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (208)
                      +++|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.+++...+.+.++...++.++++||+++.|++++|
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  163 (181)
T 2fn4_A           84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  163 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence            999999999999999999998885543 4678999999999998777788888999999999999999999999999999


Q ss_pred             HHHHHHcCC
Q 028466          164 RKIAAALPG  172 (208)
Q Consensus       164 ~~l~~~~~~  172 (208)
                      ++|.+.+.+
T Consensus       164 ~~l~~~~~~  172 (181)
T 2fn4_A          164 EQLVRAVRK  172 (181)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998854

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.8e-34  Score=207.43  Aligned_cols=169  Identities=36%  Similarity=0.670  Sum_probs=145.5

Q ss_pred             CCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccC
Q 028466            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   82 (208)
Q Consensus         3 ~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   82 (208)
                      |....+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus        20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (192)
T 2il1_A           20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA   99 (192)
T ss_dssp             --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred             CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence            44556789999999999999999999999988877788888888888888888888999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc-CCeEEEeecCCCCCHHH
Q 028466           83 SVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL-NVMFIETSAKAGFNIKA  161 (208)
Q Consensus        83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~v~~  161 (208)
                      |++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++...+++.++..+ ++.++++||+++.|+++
T Consensus       100 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  179 (192)
T 2il1_A          100 KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDE  179 (192)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHH
Confidence            99999999999999999999998888776678999999999999877777888888888875 78999999999999999


Q ss_pred             HHHHHHHHcC
Q 028466          162 LFRKIAAALP  171 (208)
Q Consensus       162 ~~~~l~~~~~  171 (208)
                      +|++|.+.+.
T Consensus       180 l~~~l~~~i~  189 (192)
T 2il1_A          180 IFLKLVDDIL  189 (192)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=4.8e-34  Score=204.58  Aligned_cols=169  Identities=33%  Similarity=0.518  Sum_probs=149.1

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECC-eEEEEEEEecCCchhhccchhhhhccCCE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (208)
                      .++.+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++ ..+.+.+|||||++.+...+..+++++|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            46789999999999999999999999988777778887778888888876 56899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcC---CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHH
Q 028466           85 AVIVYDVASRQSFLNTTKWVEEVRTERG---SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKA  161 (208)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~  161 (208)
                      +|+|||++++++++.+..|+..+.....   ..+|+++|+||+|+.+.+.....++..++..++++++++||+++.|+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            9999999999999999999888876432   2344899999999987777778889999999999999999999999999


Q ss_pred             HHHHHHHHcCCCc
Q 028466          162 LFRKIAAALPGME  174 (208)
Q Consensus       162 ~~~~l~~~~~~~~  174 (208)
                      +|++|.+.+.+.+
T Consensus       163 l~~~l~~~~~~~~  175 (178)
T 2hxs_A          163 CFQKVAAEILGIK  175 (178)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999986654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.8e-34  Score=209.27  Aligned_cols=167  Identities=37%  Similarity=0.658  Sum_probs=143.1

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      ..+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  101 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA  101 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence            35679999999999999999999999998877888888888888888888888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      |+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.....++..++...++.++++||+++.|++++|++
T Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  181 (200)
T 2o52_A          102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK  181 (200)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988776678999999999999877778888899999999999999999999999999999


Q ss_pred             HHHHcCC
Q 028466          166 IAAALPG  172 (208)
Q Consensus       166 l~~~~~~  172 (208)
                      |.+.+.+
T Consensus       182 l~~~i~~  188 (200)
T 2o52_A          182 CARTILN  188 (200)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988754

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=1.2e-33  Score=203.51  Aligned_cols=167  Identities=31%  Similarity=0.523  Sum_probs=150.4

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (208)
                      ...++.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ......++..+.+.+|||||++.+...+..+++++|
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   91 (183)
T 3kkq_A           13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD   91 (183)
T ss_dssp             -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            3456789999999999999999999999988888888877666 667778888889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecC-CCCCHHH
Q 028466           84 VAVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAK-AGFNIKA  161 (208)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~-~~~~v~~  161 (208)
                      ++|+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.....+++.++..++++++++||+ ++.|+++
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~  171 (183)
T 3kkq_A           92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK  171 (183)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence            9999999999999999999999887644 3678999999999998878888999999999999999999999 9999999


Q ss_pred             HHHHHHHHcC
Q 028466          162 LFRKIAAALP  171 (208)
Q Consensus       162 ~~~~l~~~~~  171 (208)
                      +|++|.+.+.
T Consensus       172 l~~~l~~~i~  181 (183)
T 3kkq_A          172 TFHDLVRVIR  181 (183)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2e-33  Score=204.19  Aligned_cols=166  Identities=32%  Similarity=0.631  Sum_probs=151.7

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      ..+.+||+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v  101 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA  101 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            35679999999999999999999999998877788888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      |+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.....+++.++...++.++++||+++.|++++|++
T Consensus       102 i~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  181 (193)
T 2oil_A          102 LLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFET  181 (193)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999888766668999999999999877777888899999999999999999999999999999


Q ss_pred             HHHHcC
Q 028466          166 IAAALP  171 (208)
Q Consensus       166 l~~~~~  171 (208)
                      |.+.+.
T Consensus       182 l~~~i~  187 (193)
T 2oil_A          182 VLKEIF  187 (193)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998874

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=2.5e-34  Score=211.87  Aligned_cols=174  Identities=32%  Similarity=0.510  Sum_probs=145.8

Q ss_pred             CCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhcc
Q 028466            2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD   81 (208)
Q Consensus         2 ~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   81 (208)
                      ++|+..+.+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++++
T Consensus         2 s~m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   80 (212)
T 2j0v_A            2 SHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRG   80 (212)
T ss_dssp             CCCSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTT
T ss_pred             CCCCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccC
Confidence            356778899999999999999999999999988777777776444 4556678888899999999999999999999999


Q ss_pred             CCEEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCccC--------cCHHHHHHHHHHcCC-eEEEe
Q 028466           82 SSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKRQ--------VSIEEGEAKARELNV-MFIET  151 (208)
Q Consensus        82 ~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~  151 (208)
                      +|++|+|||++++++++.+. .|+..+.... .+.|+++|+||+|+.+...        +...++..++..+++ .++++
T Consensus        81 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  159 (212)
T 2j0v_A           81 ADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIEC  159 (212)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEc
Confidence            99999999999999999986 7888887654 4799999999999965543        367788889999886 99999


Q ss_pred             ecCCCCCHHHHHHHHHHHcCCCccCC
Q 028466          152 SAKAGFNIKALFRKIAAALPGMETLS  177 (208)
Q Consensus       152 S~~~~~~v~~~~~~l~~~~~~~~~~~  177 (208)
                      ||+++.|++++|++|.+.+.+.....
T Consensus       160 Sa~~g~gi~~l~~~l~~~~~~~~~~~  185 (212)
T 2j0v_A          160 SSKTQQNVKAVFDTAIKVVLQPPRRK  185 (212)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHCC----
T ss_pred             cCCCCCCHHHHHHHHHHHHhhhhhhc
Confidence            99999999999999999987665443

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=2e-33  Score=203.87  Aligned_cols=172  Identities=36%  Similarity=0.594  Sum_probs=151.2

Q ss_pred             CCCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeee-EEEEEECCe---------EEEEEEEecCCchh
Q 028466            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL-SKTMYLEDR---------TVRLQLWDTAGQER   70 (208)
Q Consensus         1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~   70 (208)
                      |+..+..+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++. ...+..++.         .+.+.+|||||++.
T Consensus         3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   82 (195)
T 3bc1_A            3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER   82 (195)
T ss_dssp             ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred             CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence            55555677899999999999999999999999888777888887776 566666665         68999999999999


Q ss_pred             hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEE
Q 028466           71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFI  149 (208)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  149 (208)
                      +...+..+++++|++|+|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.......+++.++..+++.++
T Consensus        83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  162 (195)
T 3bc1_A           83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF  162 (195)
T ss_dssp             GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEE
Confidence            999999999999999999999999999999999998887664 6799999999999987777778889999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHHHcCC
Q 028466          150 ETSAKAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       150 ~~S~~~~~~v~~~~~~l~~~~~~  172 (208)
                      ++||+++.|++++|++|.+.+.+
T Consensus       163 ~~Sa~~~~~v~~l~~~l~~~~~~  185 (195)
T 3bc1_A          163 ETSAANGTNISHAIEMLLDLIMK  185 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999998853

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.2e-34  Score=203.69  Aligned_cols=166  Identities=37%  Similarity=0.678  Sum_probs=150.4

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   86 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI   86 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence            46799999999999999999999999988888888888888888999998889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      +|||+++++++..+..|+..+.... .+.|+++|+||+|+.+.......+...++...+++++++||+++.|++++|++|
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  165 (181)
T 3tw8_B           87 VVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI  165 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            9999999999999999999887654 579999999999998877888889999999999999999999999999999999


Q ss_pred             HHHcCCC
Q 028466          167 AAALPGM  173 (208)
Q Consensus       167 ~~~~~~~  173 (208)
                      .+.+.+.
T Consensus       166 ~~~~~~~  172 (181)
T 3tw8_B          166 TELVLRA  172 (181)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=1.7e-33  Score=203.89  Aligned_cols=166  Identities=36%  Similarity=0.621  Sum_probs=147.8

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc-cchhhhhccCCE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSSV   84 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~   84 (208)
                      .++.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+. ..+..+++++|+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~   96 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA   96 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence            3567999999999999999999999999988888888888888888888888899999999999998 888999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCC---CCHH
Q 028466           85 AVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAG---FNIK  160 (208)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~---~~v~  160 (208)
                      +|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++...+.+.++..+++.++++||+++   .|++
T Consensus        97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~  176 (189)
T 1z06_A           97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE  176 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence            999999999999999999999988765 467999999999999877778888899999999999999999999   9999


Q ss_pred             HHHHHHHHHcC
Q 028466          161 ALFRKIAAALP  171 (208)
Q Consensus       161 ~~~~~l~~~~~  171 (208)
                      ++|++|.+.+.
T Consensus       177 ~l~~~l~~~i~  187 (189)
T 1z06_A          177 AIFMTLAHKLK  187 (189)
T ss_dssp             HHHHHHC----
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=1.5e-33  Score=200.01  Aligned_cols=164  Identities=37%  Similarity=0.644  Sum_probs=150.1

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999999888888888888888888888888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      +|+|++++++++.+..|+..+.... .+.|+++|+||+|+.+.++....+++.++...++.++++||+++.|+++++++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  161 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL  161 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence            9999999999999999999887765 578999999999998777777888999999999999999999999999999999


Q ss_pred             HHHcC
Q 028466          167 AAALP  171 (208)
Q Consensus       167 ~~~~~  171 (208)
                      .+.+.
T Consensus       162 ~~~~~  166 (168)
T 1z2a_A          162 AEKHL  166 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=206.18  Aligned_cols=171  Identities=26%  Similarity=0.359  Sum_probs=144.1

Q ss_pred             CCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-chhhhhcc
Q 028466            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRD   81 (208)
Q Consensus         3 ~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~   81 (208)
                      |....+.+||+|+|.+|||||||+++|.+......+.++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++.
T Consensus        17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~   96 (195)
T 3cbq_A           17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT   96 (195)
T ss_dssp             -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred             CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence            33445789999999999999999999986554434445566666777778888889999999999988765 67788999


Q ss_pred             CCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466           82 SSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK  160 (208)
Q Consensus        82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (208)
                      +|++|+|||+++++++..+..|+..+..... .+.|+++|+||+|+.+.+.+...+++.++..+++.++++||+++.|++
T Consensus        97 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~  176 (195)
T 3cbq_A           97 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTR  176 (195)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHH
Confidence            9999999999999999999999998876553 479999999999998777788888999999999999999999999999


Q ss_pred             HHHHHHHHHcCCC
Q 028466          161 ALFRKIAAALPGM  173 (208)
Q Consensus       161 ~~~~~l~~~~~~~  173 (208)
                      ++|++|.+.+.+.
T Consensus       177 ~lf~~l~~~i~~~  189 (195)
T 3cbq_A          177 ELFEGAVRQIRLR  189 (195)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988543

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.3e-33  Score=204.56  Aligned_cols=166  Identities=30%  Similarity=0.492  Sum_probs=143.0

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      ...++|+|+|.+|+|||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|++|
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            4569999999999999999999999988777667666444 344567788889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcC--CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFR  164 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~  164 (208)
                      +|||++++++++.+..|+..+.....  .+.|+++|+||+|+.+ .+....+...++..+++.++++||+++.|++++|+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ  163 (199)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence            99999999999998888877766543  4689999999999964 55667888888899999999999999999999999


Q ss_pred             HHHHHcCCCc
Q 028466          165 KIAAALPGME  174 (208)
Q Consensus       165 ~l~~~~~~~~  174 (208)
                      +|.+.+.+..
T Consensus       164 ~l~~~~~~~~  173 (199)
T 2gf0_A          164 ELLTLETRRN  173 (199)
T ss_dssp             HHHHHCSSSC
T ss_pred             HHHHHHhhhh
Confidence            9999886543

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=4e-33  Score=204.10  Aligned_cols=166  Identities=36%  Similarity=0.666  Sum_probs=152.1

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      ...+||+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|++|
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   85 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI   85 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence            45799999999999999999999999988777888888888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.....+++.++..+++.++++||+++.|++++|++|
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  165 (203)
T 1zbd_A           86 LMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL  165 (203)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999887766689999999999998777788889999999999999999999999999999999


Q ss_pred             HHHcCC
Q 028466          167 AAALPG  172 (208)
Q Consensus       167 ~~~~~~  172 (208)
                      .+.+.+
T Consensus       166 ~~~i~~  171 (203)
T 1zbd_A          166 VDVICE  171 (203)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988754

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=3e-33  Score=198.26  Aligned_cols=164  Identities=31%  Similarity=0.555  Sum_probs=145.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      |+.+||+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++++|+++
T Consensus         1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   79 (167)
T 1c1y_A            1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence            4679999999999999999999999988777777776544 355667777889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc-CCeEEEeecCCCCCHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL-NVMFIETSAKAGFNIKALFR  164 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~v~~~~~  164 (208)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.....++..++..+ +.+++++||+++.|++++++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  159 (167)
T 1c1y_A           80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence            9999999999999999998887654 357999999999999877777888889999888 78999999999999999999


Q ss_pred             HHHHHcC
Q 028466          165 KIAAALP  171 (208)
Q Consensus       165 ~l~~~~~  171 (208)
                      +|.+.+.
T Consensus       160 ~l~~~i~  166 (167)
T 1c1y_A          160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998774

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=205.91  Aligned_cols=167  Identities=40%  Similarity=0.637  Sum_probs=139.1

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      ..+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  104 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV  104 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence            35679999999999999999999999998877788888888888888899889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc------CccCcCHHHHHHHHHHcCCeEEEeecCCCCCH
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV------DKRQVSIEEGEAKARELNVMFIETSAKAGFNI  159 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v  159 (208)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+.      ..+.+...+++.++...++.++++||+++.|+
T Consensus       105 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv  184 (199)
T 2p5s_A          105 LLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI  184 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTH
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCH
Confidence            999999999999999999998887766679999999999996      34566778888999999999999999999999


Q ss_pred             HHHHHHHHHHcCC
Q 028466          160 KALFRKIAAALPG  172 (208)
Q Consensus       160 ~~~~~~l~~~~~~  172 (208)
                      +++|++|.+.+.+
T Consensus       185 ~el~~~l~~~i~~  197 (199)
T 2p5s_A          185 VEAVLHLAREVKK  197 (199)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998753

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=1.4e-33  Score=200.55  Aligned_cols=164  Identities=39%  Similarity=0.744  Sum_probs=143.5

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      ..+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++|+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            46899999999999999999999999887788888888888888888888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      |+|+++++++..+..|+..+......+.|+++|+||+|+ ........+...++..++++++++||+++.|++++|++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  160 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  160 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999999998877678999999999999 4556677888899999999999999999999999999999


Q ss_pred             HHcCC
Q 028466          168 AALPG  172 (208)
Q Consensus       168 ~~~~~  172 (208)
                      +.+.+
T Consensus       161 ~~~~~  165 (170)
T 1g16_A          161 KLIQE  165 (170)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88753

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.8e-34  Score=209.37  Aligned_cols=171  Identities=32%  Similarity=0.478  Sum_probs=144.1

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (208)
                      |+..+.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|
T Consensus        19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   97 (201)
T 3oes_A           19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH   97 (201)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred             CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence            4456789999999999999999999999999887777777655 555556666788999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHH
Q 028466           84 VAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL  162 (208)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~  162 (208)
                      ++|+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+...+...+.+.++...++.++++||+++.|++++
T Consensus        98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  177 (201)
T 3oes_A           98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI  177 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999998876543 56899999999999888888889999999999999999999999999999


Q ss_pred             HHHHHHHcCCCcc
Q 028466          163 FRKIAAALPGMET  175 (208)
Q Consensus       163 ~~~l~~~~~~~~~  175 (208)
                      |++|.+.+.+...
T Consensus       178 ~~~l~~~i~~~~~  190 (201)
T 3oes_A          178 FTKVIQEIARVEN  190 (201)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHhhhh
Confidence            9999999865443

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.6e-33  Score=203.86  Aligned_cols=166  Identities=25%  Similarity=0.410  Sum_probs=141.9

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (208)
                      .+..+.+||+|+|.+|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+... ..+++++|
T Consensus        16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~   93 (187)
T 3c5c_A           16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH   93 (187)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred             hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence            4456789999999999999999999999998877778877555 455677888889999999999988875 67899999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhc---CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeec-CCCCCH
Q 028466           84 VAVIVYDVASRQSFLNTTKWVEEVRTER---GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSA-KAGFNI  159 (208)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~-~~~~~v  159 (208)
                      ++|+|||++++++++.+..|+..+....   ..+.|+++|+||+|+.+.+++...++.+++..+++.++++|| +++.|+
T Consensus        94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv  173 (187)
T 3c5c_A           94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHV  173 (187)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccH
Confidence            9999999999999999999999887664   257999999999999877788889999999999999999999 899999


Q ss_pred             HHHHHHHHHHcC
Q 028466          160 KALFRKIAAALP  171 (208)
Q Consensus       160 ~~~~~~l~~~~~  171 (208)
                      +++|++|.+.+.
T Consensus       174 ~~lf~~l~~~i~  185 (187)
T 3c5c_A          174 QHVFHEAVREAR  185 (187)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.5e-34  Score=207.90  Aligned_cols=165  Identities=36%  Similarity=0.678  Sum_probs=152.9

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++++|++|
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  100 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI  100 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence            46799999999999999999999999988888888888888888888887789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.....+.+.++..+++.++++||+++.|++++|++|
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  180 (191)
T 3dz8_A          101 LMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL  180 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999988776789999999999998878888899999999999999999999999999999999


Q ss_pred             HHHcC
Q 028466          167 AAALP  171 (208)
Q Consensus       167 ~~~~~  171 (208)
                      .+.+.
T Consensus       181 ~~~i~  185 (191)
T 3dz8_A          181 VDAIC  185 (191)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98874

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.5e-33  Score=201.46  Aligned_cols=170  Identities=39%  Similarity=0.676  Sum_probs=152.6

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      ++.+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   92 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   92 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            56799999999999999999999999988888888888888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      +|||++++.++..+..|+..+..... .+.|+++|+||+|+. ..+....++..++...++.++++||+++.|++++|++
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  171 (195)
T 1x3s_A           93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  171 (195)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999998876543 578999999999994 4566778889999999999999999999999999999


Q ss_pred             HHHHcCCCccCC
Q 028466          166 IAAALPGMETLS  177 (208)
Q Consensus       166 l~~~~~~~~~~~  177 (208)
                      |.+.+.+.+...
T Consensus       172 l~~~~~~~~~~~  183 (195)
T 1x3s_A          172 LVEKIIQTPGLW  183 (195)
T ss_dssp             HHHHHHTSGGGT
T ss_pred             HHHHHHhhhhhh
Confidence            999987655433

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=6.2e-33  Score=196.57  Aligned_cols=164  Identities=34%  Similarity=0.583  Sum_probs=143.4

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      |+.+||+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (168)
T 1u8z_A            2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   80 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence            5679999999999999999999999988777667666444 345667888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      +|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.++....+++.++...+++++++||+++.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (168)
T 1u8z_A           81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence            99999999999999999998887654 57999999999999877778888999999999999999999999999999999


Q ss_pred             HHHHcC
Q 028466          166 IAAALP  171 (208)
Q Consensus       166 l~~~~~  171 (208)
                      |.+.+.
T Consensus       161 l~~~i~  166 (168)
T 1u8z_A          161 LMREIR  166 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998874

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=6.9e-34  Score=210.26  Aligned_cols=167  Identities=37%  Similarity=0.619  Sum_probs=148.7

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCe----------EEEEEEEecCCchhhccch
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRLQLWDTAGQERFRSLI   75 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~~~~~   75 (208)
                      ..+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++.          .+.+.||||||++.+...+
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~  101 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT  101 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence            356799999999999999999999999888777788888877777777665          6789999999999999999


Q ss_pred             hhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecC
Q 028466           76 PSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAK  154 (208)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  154 (208)
                      ..+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+...+++.++..+++.++++||+
T Consensus       102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  181 (217)
T 2f7s_A          102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA  181 (217)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTT
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECC
Confidence            9999999999999999999999999999887765443 578999999999998777788889999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHcCC
Q 028466          155 AGFNIKALFRKIAAALPG  172 (208)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~  172 (208)
                      ++.|++++|++|.+.+.+
T Consensus       182 ~g~gi~~l~~~l~~~i~~  199 (217)
T 2f7s_A          182 TGQNVEKAVETLLDLIMK  199 (217)
T ss_dssp             TTBTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=1.1e-32  Score=197.34  Aligned_cols=166  Identities=37%  Similarity=0.625  Sum_probs=145.6

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      ..+.++|+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            34679999999999999999999999998888888888888888888898888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcC----CCCeEEEEEeCCCCcCccCcCHHHHHHHHH-HcCCeEEEeecCCCCCHH
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTERG----SDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-ELNVMFIETSAKAGFNIK  160 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~v~  160 (208)
                      ++|||++++.++..+..|+..+.....    .+.|+++|+||+|+. ..+....++..++. ..++.++++||+++.|++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  162 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  162 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            999999999999999999988876654    578999999999996 55667788888888 556899999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028466          161 ALFRKIAAALPG  172 (208)
Q Consensus       161 ~~~~~l~~~~~~  172 (208)
                      ++|++|.+.+.+
T Consensus       163 ~l~~~l~~~~~~  174 (177)
T 1wms_A          163 AAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998754

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=2.9e-33  Score=206.68  Aligned_cols=171  Identities=27%  Similarity=0.485  Sum_probs=144.8

Q ss_pred             CCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccC
Q 028466            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   82 (208)
Q Consensus         3 ~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   82 (208)
                      +...++.+||+|+|.+|||||||+++|+++.+...+.++.+.++ ...+.+++..+.+.+|||+|++.+...+..+++++
T Consensus        21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   99 (214)
T 3q3j_B           21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS   99 (214)
T ss_dssp             ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred             CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCC
Confidence            34456789999999999999999999999999888888887665 45566777788999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcCC-eE
Q 028466           83 SVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELNV-MF  148 (208)
Q Consensus        83 d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~  148 (208)
                      |++|+|||++++++++. +..|+..+.... .+.|+++|+||+|+.++            +.+...++..++..+++ .+
T Consensus       100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  178 (214)
T 3q3j_B          100 DAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIY  178 (214)
T ss_dssp             SEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred             eEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEE
Confidence            99999999999999998 788998888764 57999999999999753            56888899999999999 99


Q ss_pred             EEeecCCCCC-HHHHHHHHHHHcCCCcc
Q 028466          149 IETSAKAGFN-IKALFRKIAAALPGMET  175 (208)
Q Consensus       149 ~~~S~~~~~~-v~~~~~~l~~~~~~~~~  175 (208)
                      +++||+++.| ++++|++|.+.+.....
T Consensus       179 ~e~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          179 LEGSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             EECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             EEeccCCCcccHHHHHHHHHHHHhccCc
Confidence            9999999998 99999999998865433

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=7.1e-33  Score=200.04  Aligned_cols=162  Identities=19%  Similarity=0.353  Sum_probs=141.1

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (208)
                      +..++++||+|+|.+|||||||+++|+++.+...+.++.+  .....+.+++..+.+.+|||+|++.+.     +++++|
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~   87 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD   87 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence            4557899999999999999999999999998877766633  334777888988999999999998876     788999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCc--CccCcCHHHHHHHHHHcC-CeEEEeecCCCCCH
Q 028466           84 VAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLV--DKRQVSIEEGEAKARELN-VMFIETSAKAGFNI  159 (208)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v  159 (208)
                      ++++|||++++++++.+..|+..+..... .+.|+++|+||+|+.  ..+.+...+++.++..++ +.++++||+++.|+
T Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv  167 (184)
T 3ihw_A           88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV  167 (184)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence            99999999999999999999999987653 578999999999994  456677889999999997 89999999999999


Q ss_pred             HHHHHHHHHHcCC
Q 028466          160 KALFRKIAAALPG  172 (208)
Q Consensus       160 ~~~~~~l~~~~~~  172 (208)
                      +++|++|.+.+.+
T Consensus       168 ~~lf~~l~~~i~~  180 (184)
T 3ihw_A          168 ERVFQDVAQKVVA  180 (184)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988743

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.9e-33  Score=202.67  Aligned_cols=169  Identities=33%  Similarity=0.486  Sum_probs=144.7

Q ss_pred             CCCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhc
Q 028466            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (208)
Q Consensus         1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   80 (208)
                      |+.|...+.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++. ...+..+++
T Consensus        20 ~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~   97 (196)
T 2atv_A           20 FQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMR   97 (196)
T ss_dssp             -------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHH
T ss_pred             hhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhc
Confidence            3445667789999999999999999999999988877777776544 45567788888999999999988 777888999


Q ss_pred             cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCC-C
Q 028466           81 DSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGF-N  158 (208)
Q Consensus        81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~  158 (208)
                      .+|++|+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.++....++..++..+++.++++||+++. |
T Consensus        98 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~g  177 (196)
T 2atv_A           98 WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGN  177 (196)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTC
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcC
Confidence            99999999999999999999999988877543 579999999999998777788889999999999999999999999 9


Q ss_pred             HHHHHHHHHHHcC
Q 028466          159 IKALFRKIAAALP  171 (208)
Q Consensus       159 v~~~~~~l~~~~~  171 (208)
                      ++++|++|.+.+.
T Consensus       178 i~~l~~~l~~~i~  190 (196)
T 2atv_A          178 ITEIFYELCREVR  190 (196)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998874

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=2.2e-32  Score=199.85  Aligned_cols=165  Identities=38%  Similarity=0.674  Sum_probs=146.1

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeE--------------------------
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT--------------------------   57 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------   57 (208)
                      |+..+.+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..                          
T Consensus         2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (208)
T 3clv_A            2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN   81 (208)
T ss_dssp             CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence            445678999999999999999999999999888888888878877777776654                          


Q ss_pred             -----------EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 028466           58 -----------VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL  126 (208)
Q Consensus        58 -----------~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~  126 (208)
                                 +.+.+|||||++.+...+..+++.+|++|+|+|++++.+++.+..|+..+.....  .|+++|+||+| 
T Consensus        82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-  158 (208)
T 3clv_A           82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-  158 (208)
T ss_dssp             ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-
T ss_pred             ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-
Confidence                       7899999999999999999999999999999999999999999999998877653  99999999999 


Q ss_pred             cCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      ....+....+++.++...++.++++||+++.|++++|++|.+.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  203 (208)
T 3clv_A          159 KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY  203 (208)
T ss_dssp             CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence            555677788999999999999999999999999999999998764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=8.2e-33  Score=195.78  Aligned_cols=163  Identities=34%  Similarity=0.548  Sum_probs=144.7

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      |+.+||+|+|++|+|||||+++|.++.+...+.++.+. .....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i   79 (167)
T 1kao_A            1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   79 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            45799999999999999999999999887776666653 33566778888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      +|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.++....+.+.++..++++++++||+++.|+++++++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  159 (167)
T 1kao_A           80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence            99999999999999999988876543 57999999999999877778888889999999999999999999999999999


Q ss_pred             HHHHc
Q 028466          166 IAAAL  170 (208)
Q Consensus       166 l~~~~  170 (208)
                      |.+.+
T Consensus       160 l~~~~  164 (167)
T 1kao_A          160 IVRQM  164 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99876

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=8.5e-33  Score=196.46  Aligned_cols=163  Identities=28%  Similarity=0.407  Sum_probs=132.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-chhhhhccCCEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDSSVAVI   87 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~   87 (208)
                      .+||+|+|.+|+|||||+++|.+..+.....++.+.+.....+.+++..+.+.+||+||++.+.. ....+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            48999999999999999999998777666666667777788888999899999999999998876 67777899999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      |||++++++++.+..|+..+..... .+.|+++|+||+|+.+.++....+...++...+++++++||+++.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999999887654 479999999999998778888999999999999999999999999999999999


Q ss_pred             HHHcC
Q 028466          167 AAALP  171 (208)
Q Consensus       167 ~~~~~  171 (208)
                      .+.+.
T Consensus       162 ~~~i~  166 (169)
T 3q85_A          162 VRQIR  166 (169)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-32  Score=200.48  Aligned_cols=169  Identities=29%  Similarity=0.484  Sum_probs=145.7

Q ss_pred             CCCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhc
Q 028466            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (208)
Q Consensus         1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   80 (208)
                      |+.+...+.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++
T Consensus        10 m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   88 (194)
T 2atx_A           10 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP   88 (194)
T ss_dssp             CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred             cCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcC
Confidence            4455556789999999999999999999999988777777776444 455667777889999999999999999999999


Q ss_pred             cCCEEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcCC-
Q 028466           81 DSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELNV-  146 (208)
Q Consensus        81 ~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-  146 (208)
                      ++|++|+|||+++++++..+. .|+..+.... .+.|+++|+||+|+.+.            +.+...++..++..+++ 
T Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  167 (194)
T 2atx_A           89 MTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC  167 (194)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCS
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCc
Confidence            999999999999999999987 7888887654 47999999999999653            35677888999999987 


Q ss_pred             eEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          147 MFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       147 ~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      .++++||+++.|++++|++|.+.+.
T Consensus       168 ~~~~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          168 CYVECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999999998764

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1e-32  Score=203.16  Aligned_cols=166  Identities=40%  Similarity=0.727  Sum_probs=149.5

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   97 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII   97 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            45799999999999999999999999988788888888888888888888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+ ........+...++..++++++++||+++.|++++|++|
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  176 (213)
T 3cph_A           98 LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  176 (213)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999988776667999999999999 455667788888989999999999999999999999999


Q ss_pred             HHHcCCC
Q 028466          167 AAALPGM  173 (208)
Q Consensus       167 ~~~~~~~  173 (208)
                      .+.+.+.
T Consensus       177 ~~~~~~~  183 (213)
T 3cph_A          177 AKLIQEK  183 (213)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=2.2e-32  Score=198.80  Aligned_cols=166  Identities=32%  Similarity=0.504  Sum_probs=145.8

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      ..+.+||+|+|.+|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++++|++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   98 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV   98 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence            356799999999999999999999999988777788776554 4567888888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCc--cCcCHHHHHHHHHHcCCe-EEEeecCCCCCHHH
Q 028466           86 VIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK--RQVSIEEGEAKARELNVM-FIETSAKAGFNIKA  161 (208)
Q Consensus        86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~v~~  161 (208)
                      |+|||++++++++.+ ..|+..+... ..+.|+++|+||+|+.+.  +.....++..++..+++. ++++||+++.|+++
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  177 (194)
T 3reg_A           99 LLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE  177 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence            999999999999996 6777777654 357999999999999753  567788999999999987 99999999999999


Q ss_pred             HHHHHHHHcCCC
Q 028466          162 LFRKIAAALPGM  173 (208)
Q Consensus       162 ~~~~l~~~~~~~  173 (208)
                      +|++|.+.+.+.
T Consensus       178 l~~~l~~~i~~~  189 (194)
T 3reg_A          178 VFEKSVDCIFSN  189 (194)
T ss_dssp             HHHHHHHHHHCS
T ss_pred             HHHHHHHHHHhc
Confidence            999999988544

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=1e-32  Score=199.31  Aligned_cols=166  Identities=30%  Similarity=0.518  Sum_probs=142.9

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+++||+|+|.+|+|||||+++|.++.+...+.++.+ +.....+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            3579999999999999999999999988777666664 444566678888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      +|||++++++++.+..|+..+..... .+.|+++|+||+|+. .......++..++..++++++++||+++.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998887543 578999999999996 4566778889999999999999999999999999999


Q ss_pred             HHHHcCCCc
Q 028466          166 IAAALPGME  174 (208)
Q Consensus       166 l~~~~~~~~  174 (208)
                      |.+.+.+..
T Consensus       160 l~~~~~~~~  168 (189)
T 4dsu_A          160 LVREIRKHK  168 (189)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999985443

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=2.7e-32  Score=196.76  Aligned_cols=166  Identities=34%  Similarity=0.582  Sum_probs=146.0

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (208)
                      ..++.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (187)
T 2a9k_A           14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   92 (187)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence            346789999999999999999999999988777767665444 4456678888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466           85 AVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF  163 (208)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (208)
                      +|+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.++....+++.++..++++++++|++++.|++++|
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  172 (187)
T 2a9k_A           93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  172 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence            9999999999999999999998887664 479999999999998777788889999999999999999999999999999


Q ss_pred             HHHHHHcC
Q 028466          164 RKIAAALP  171 (208)
Q Consensus       164 ~~l~~~~~  171 (208)
                      ++|.+.+.
T Consensus       173 ~~l~~~i~  180 (187)
T 2a9k_A          173 FDLMREIR  180 (187)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998874

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=9.3e-33  Score=204.31  Aligned_cols=177  Identities=29%  Similarity=0.473  Sum_probs=151.0

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECC-eEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      ...+||+|+|.+|+|||||+++|+++.+...+.++.+.......+...+ ..+.+.+|||||++.+...+..++..+|++
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA   88 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence            4679999999999999999999999888777777777666666655543 347899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+.+..+....++..++...++.++++||+++.|++++|++
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  168 (218)
T 4djt_A           89 ILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH  168 (218)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999999998877777999999999999877778888888898889999999999999999999999


Q ss_pred             HHHHcCCCccCCcccccc
Q 028466          166 IAAALPGMETLSSTKQED  183 (208)
Q Consensus       166 l~~~~~~~~~~~~~~~~~  183 (208)
                      |.+.+.+...........
T Consensus       169 l~~~~~~~~~~~~~~~~~  186 (218)
T 4djt_A          169 LARIFTGRPDLIFVSNVN  186 (218)
T ss_dssp             HHHHHHCCTTCCBCSCCC
T ss_pred             HHHHHhcccccccccccC
Confidence            999998776665554443

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.3e-32  Score=196.52  Aligned_cols=164  Identities=35%  Similarity=0.476  Sum_probs=133.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh--hccchhhhhccCCE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--FRSLIPSYIRDSSV   84 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~   84 (208)
                      ++.+||+|+|.+|||||||+++|.+..+...+ ++.+.++....+.+++..+.+.+|||||++.  +......+++.+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            45799999999999999999999988875543 3455566677778888888999999999987  56667788899999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466           85 AVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF  163 (208)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (208)
                      +++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+++...+.+.++..++++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            999999999999999999988887653 3578999999999998777788888888999999999999999999999999


Q ss_pred             HHHHHHcC
Q 028466          164 RKIAAALP  171 (208)
Q Consensus       164 ~~l~~~~~  171 (208)
                      ++|.+.+.
T Consensus       161 ~~l~~~~~  168 (175)
T 2nzj_A          161 EGVVRQLR  168 (175)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998874

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=3.6e-32  Score=194.95  Aligned_cols=162  Identities=21%  Similarity=0.399  Sum_probs=136.8

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (208)
                      |..++.+||+|+|.+|||||||+++|.++.+.. +.++.+.. ....+.+++..+.+.+|||||++.     ..+++++|
T Consensus         2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d   74 (178)
T 2iwr_A            2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWAD   74 (178)
T ss_dssp             CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCS
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCC
Confidence            455788999999999999999999999998876 56666633 356677888888999999999876     45788999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcC---CCCeEEEEEeCCCCc--CccCcCHHHHHHHHHHc-CCeEEEeecCCCC
Q 028466           84 VAVIVYDVASRQSFLNTTKWVEEVRTERG---SDVIIVLVGNKTDLV--DKRQVSIEEGEAKAREL-NVMFIETSAKAGF  157 (208)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~  157 (208)
                      ++|+|||++++++++.+..|+..+.....   .+.|+++|+||+|+.  ..+.+...+++.++... ++.++++||+++.
T Consensus        75 ~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  154 (178)
T 2iwr_A           75 AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGL  154 (178)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTB
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccC
Confidence            99999999999999999997766654432   578999999999994  45567788888888876 6899999999999


Q ss_pred             CHHHHHHHHHHHcCC
Q 028466          158 NIKALFRKIAAALPG  172 (208)
Q Consensus       158 ~v~~~~~~l~~~~~~  172 (208)
                      |++++|++|.+.+.+
T Consensus       155 ~i~~lf~~l~~~~~~  169 (178)
T 2iwr_A          155 NVDRVFQEVAQKVVT  169 (178)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999988753

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=4.1e-32  Score=195.71  Aligned_cols=167  Identities=32%  Similarity=0.516  Sum_probs=144.2

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      .++.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   80 (186)
T 1mh1_A            2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (186)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEE
Confidence            46789999999999999999999999988777767665433 45567788888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcCC-eEEEe
Q 028466           86 VIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELNV-MFIET  151 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  151 (208)
                      |+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+.            +.+...+...++..++. .++++
T Consensus        81 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  159 (186)
T 1mh1_A           81 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  159 (186)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEe
Confidence            9999999999999986 6888777654 37999999999999653            45667788889999887 99999


Q ss_pred             ecCCCCCHHHHHHHHHHHcCCCc
Q 028466          152 SAKAGFNIKALFRKIAAALPGME  174 (208)
Q Consensus       152 S~~~~~~v~~~~~~l~~~~~~~~  174 (208)
                      ||+++.|++++|++|.+.+.+.+
T Consensus       160 Sa~~g~gi~~l~~~l~~~~~~~~  182 (186)
T 1mh1_A          160 SALTQRGLKTVFDEAIRAVLCPP  182 (186)
T ss_dssp             CTTTCTTHHHHHHHHHHHHSCCC
T ss_pred             cCCCccCHHHHHHHHHHHHhccc
Confidence            99999999999999999986543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=1.6e-32  Score=197.09  Aligned_cols=170  Identities=37%  Similarity=0.618  Sum_probs=132.2

Q ss_pred             CCCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC-CeEEEEEEEecCCchhhccchhhhh
Q 028466            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYI   79 (208)
Q Consensus         1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~   79 (208)
                      |++ ...+.++|+|+|.+|+|||||+++|+++.+...+.++.+.++....+.++ +..+.+.+|||||++.+...+..++
T Consensus         1 Ms~-~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   79 (182)
T 1ky3_A            1 MSS-RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFY   79 (182)
T ss_dssp             -------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCS
T ss_pred             CCc-ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHh
Confidence            544 34567999999999999999999999999888888888877877777776 5567899999999999999999999


Q ss_pred             ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC----CCCeEEEEEeCCCCcC-ccCcCHHHHHHHHH-HcCCeEEEeec
Q 028466           80 RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG----SDVIIVLVGNKTDLVD-KRQVSIEEGEAKAR-ELNVMFIETSA  153 (208)
Q Consensus        80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~S~  153 (208)
                      +.+|++|+|||++++.+++.+..|+..+.....    .+.|+++|+||+|+.+ .......++..++. ..++.++++||
T Consensus        80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  159 (182)
T 1ky3_A           80 RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSA  159 (182)
T ss_dssp             TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBT
T ss_pred             hcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEec
Confidence            999999999999999999999999998877653    6789999999999954 34566778888887 45689999999


Q ss_pred             CCCCCHHHHHHHHHHHcC
Q 028466          154 KAGFNIKALFRKIAAALP  171 (208)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~  171 (208)
                      +++.|++++|++|.+.+.
T Consensus       160 ~~~~gi~~l~~~l~~~~~  177 (182)
T 1ky3_A          160 KNAINVDTAFEEIARSAL  177 (182)
T ss_dssp             TTTBSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999998874

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.2e-32  Score=191.59  Aligned_cols=164  Identities=30%  Similarity=0.486  Sum_probs=142.7

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      +.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ......++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            468999999999999999999999888766667666444 3445677777899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcC--CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      |||++++++++.+..|+..+.....  .+.|+++|+||+|+.+.++....+...++...+++++++||+++.|+++++++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            9999999999999888888776543  46899999999999877777788888899999999999999999999999999


Q ss_pred             HHHHcCC
Q 028466          166 IAAALPG  172 (208)
Q Consensus       166 l~~~~~~  172 (208)
                      |.+.+..
T Consensus       161 l~~~~~~  167 (172)
T 2erx_A          161 LLNLEKR  167 (172)
T ss_dssp             HHHTCCS
T ss_pred             HHHHHhh
Confidence            9998753

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=3.3e-32  Score=198.91  Aligned_cols=167  Identities=33%  Similarity=0.498  Sum_probs=135.9

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (208)
                      ...+.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++++|+
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI   94 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence            446789999999999999999999999888777777765443 4566778888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcCC-eEEE
Q 028466           85 AVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELNV-MFIE  150 (208)
Q Consensus        85 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~  150 (208)
                      +|+|||+++++++..+. .|+..+.... .+.|+++|+||+|+.+.            +.+...++..++..++. .+++
T Consensus        95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  173 (201)
T 2q3h_A           95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE  173 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence            99999999999999986 7888887654 47999999999999652            45677888899998887 9999


Q ss_pred             eecCCCCCHHHHHHHHHHHcCCC
Q 028466          151 TSAKAGFNIKALFRKIAAALPGM  173 (208)
Q Consensus       151 ~S~~~~~~v~~~~~~l~~~~~~~  173 (208)
                      +||+++.|++++|++|.+.+.+.
T Consensus       174 ~Sa~~g~gi~~l~~~l~~~~~~~  196 (201)
T 2q3h_A          174 CSALTQKNLKEVFDAAIVAGIQY  196 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EecCCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999887543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=211.58  Aligned_cols=166  Identities=39%  Similarity=0.688  Sum_probs=142.1

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.+||+|+|.+|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++|
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            45799999999999999999999999988888888888888888889998889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.....+++.++..++++++++||+++.|++++|++|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l  190 (199)
T 3l0i_B          111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM  190 (199)
T ss_dssp             ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999987766689999999999998777776677888899999999999999999999999999


Q ss_pred             HHHcCC
Q 028466          167 AAALPG  172 (208)
Q Consensus       167 ~~~~~~  172 (208)
                      .+.+.+
T Consensus       191 ~~~l~~  196 (199)
T 3l0i_B          191 AAEIKK  196 (199)
T ss_dssp             TTTTTT
T ss_pred             HHHHHH
Confidence            988754

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=5.3e-32  Score=191.79  Aligned_cols=161  Identities=32%  Similarity=0.462  Sum_probs=121.2

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      .+||+++|.+|+|||||+++|.+..+... .++.+.++ ...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            58999999999999999999987665432 33333333 45567888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           89 YDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      ||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.++....+.+.++...+++++++||+++.|++++|++|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            99999999999999999887653 36799999999999988888889999999999999999999999999999999999


Q ss_pred             HHcC
Q 028466          168 AALP  171 (208)
Q Consensus       168 ~~~~  171 (208)
                      +.+.
T Consensus       160 ~~~~  163 (166)
T 3q72_A          160 RQIR  163 (166)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=5e-33  Score=204.01  Aligned_cols=166  Identities=31%  Similarity=0.491  Sum_probs=111.4

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcC--CCCCCccceeeeeeeEEEEEECCe--EEEEEEEecCCchhhccchhhhhccC
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAGQERFRSLIPSYIRDS   82 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~   82 (208)
                      .+.++|+|+|.+|+|||||+++|.++  .+...+.++.+.++....+.+++.  .+.+.+|||||++.+...+..+++++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            46799999999999999999999988  777777788877788888888876  78999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHhHHHHHHHHHhhcC---CCCeEEEEEeCCCCcC-ccCcCHHHHHHHHHHcCCeEEEeecCC-CC
Q 028466           83 SVAVIVYDVASRQSFLNTTKWVEEVRTERG---SDVIIVLVGNKTDLVD-KRQVSIEEGEAKARELNVMFIETSAKA-GF  157 (208)
Q Consensus        83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~-~~  157 (208)
                      |++|+|||++++.+++.+..|+..+.....   .+.|+++|+||+|+.+ .+.+...+++.++..+++.++++||++ +.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999987765   5799999999999987 677888899999999999999999999 99


Q ss_pred             CHHHHHHHHHHHcCC
Q 028466          158 NIKALFRKIAAALPG  172 (208)
Q Consensus       158 ~v~~~~~~l~~~~~~  172 (208)
                      |++++|++|.+.+.+
T Consensus       178 gi~~l~~~i~~~~~~  192 (208)
T 2yc2_C          178 DADAPFLSIATTFYR  192 (208)
T ss_dssp             --CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999988753

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=7.6e-32  Score=195.25  Aligned_cols=167  Identities=29%  Similarity=0.518  Sum_probs=133.8

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (208)
                      .+.++.++|+|+|.+|||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|
T Consensus        16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   94 (190)
T 3con_A           16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE   94 (190)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCS
T ss_pred             ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCC
Confidence            4557889999999999999999999999888766666655333 456677888889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHH
Q 028466           84 VAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL  162 (208)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~  162 (208)
                      ++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ......++++++..++++++++|++++.|++++
T Consensus        95 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  173 (190)
T 3con_A           95 GFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDA  173 (190)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999988876653 5689999999999965 556778889999999999999999999999999


Q ss_pred             HHHHHHHcCC
Q 028466          163 FRKIAAALPG  172 (208)
Q Consensus       163 ~~~l~~~~~~  172 (208)
                      +++|.+.+.+
T Consensus       174 ~~~l~~~~~~  183 (190)
T 3con_A          174 FYTLVREIRQ  183 (190)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998753

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.1e-32  Score=199.79  Aligned_cols=166  Identities=31%  Similarity=0.458  Sum_probs=137.7

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcCCC--CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh-hccchhhhhcc
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRD   81 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~   81 (208)
                      ...+.+||+|+|.+|||||||+++|++...  ... .++.+.++....+.+++..+.+.+|||+|.+. +..+...+++.
T Consensus        33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~  111 (211)
T 2g3y_A           33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV  111 (211)
T ss_dssp             --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence            345679999999999999999999996443  333 34456666677788888888999999999887 55566777889


Q ss_pred             CCEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466           82 SSVAVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK  160 (208)
Q Consensus        82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (208)
                      +|++|+|||++++++|+.+..|+..+.... ..++|++||+||+|+.+.+++...+.+.++..+++.++++||++|.|++
T Consensus       112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~  191 (211)
T 2g3y_A          112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK  191 (211)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            999999999999999999999988876542 3579999999999997767777888888888899999999999999999


Q ss_pred             HHHHHHHHHcC
Q 028466          161 ALFRKIAAALP  171 (208)
Q Consensus       161 ~~~~~l~~~~~  171 (208)
                      ++|++|.+.+.
T Consensus       192 elf~~l~~~i~  202 (211)
T 2g3y_A          192 ELFEGIVRQVR  202 (211)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998873

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=3e-31  Score=187.40  Aligned_cols=163  Identities=29%  Similarity=0.511  Sum_probs=141.9

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      |+.+||+++|.+|+|||||+++|.++.+...+.++.+.. ....+..++..+.+.+||+||++.+...+..++..+|+++
T Consensus         1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   79 (166)
T 2ce2_X            1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (166)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEE
Confidence            356999999999999999999999988876666665533 3555667888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      +|||+++++++..+..|+..+..... .+.|+++|+||+|+.+ ......+.++++..++++++++|++++.|+++++++
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  158 (166)
T 2ce2_X           80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYT  158 (166)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            99999999999999999988877653 4799999999999865 456678888999999999999999999999999999


Q ss_pred             HHHHcC
Q 028466          166 IAAALP  171 (208)
Q Consensus       166 l~~~~~  171 (208)
                      |.+.+.
T Consensus       159 l~~~~~  164 (166)
T 2ce2_X          159 LVREIR  164 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998774

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=7.5e-32  Score=194.51  Aligned_cols=164  Identities=26%  Similarity=0.491  Sum_probs=141.2

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      ..+.+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.|...+..+++++|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            45789999999999999999999999988877777776555 34566778888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcC-CeEEEe
Q 028466           86 VIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELN-VMFIET  151 (208)
Q Consensus        86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  151 (208)
                      |+|||++++++++.+ ..|+..+.... .+.|+++|+||+|+.+.            +.+...++..++..++ +.++++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  161 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  161 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence            999999999999998 78888876654 57999999999999642            4567788899999887 699999


Q ss_pred             ecC-CCCCHHHHHHHHHHHcC
Q 028466          152 SAK-AGFNIKALFRKIAAALP  171 (208)
Q Consensus       152 S~~-~~~~v~~~~~~l~~~~~  171 (208)
                      ||+ ++.|++++|+.|.+.+.
T Consensus       162 Sa~~~~~gi~~l~~~i~~~~l  182 (184)
T 1m7b_A          162 SALQSENSVRDIFHVATLACV  182 (184)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHH
T ss_pred             eecCCCcCHHHHHHHHHHHHh
Confidence            999 68999999999998764

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=9e-32  Score=197.45  Aligned_cols=163  Identities=26%  Similarity=0.494  Sum_probs=141.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.+||+|+|.+|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.|...+..+++++|++|
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  104 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL  104 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence            4679999999999999999999999998877777776555 445667787889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcC-CeEEEee
Q 028466           87 IVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELN-VMFIETS  152 (208)
Q Consensus        87 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S  152 (208)
                      +|||++++++++.+ ..|+..+.... .+.|+++|+||+|+.+.            +.+...+++.++..++ +.++++|
T Consensus       105 lv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  183 (205)
T 1gwn_A          105 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  183 (205)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEee
Confidence            99999999999998 78888887654 57999999999999642            4567788899998887 6999999


Q ss_pred             cC-CCCCHHHHHHHHHHHcC
Q 028466          153 AK-AGFNIKALFRKIAAALP  171 (208)
Q Consensus       153 ~~-~~~~v~~~~~~l~~~~~  171 (208)
                      |+ ++.|++++|+.|.+.+.
T Consensus       184 Ak~~~~gv~~lf~~l~~~~l  203 (205)
T 1gwn_A          184 ALQSENSVRDIFHVATLACV  203 (205)
T ss_dssp             TTTCHHHHHHHHHHHHHHHH
T ss_pred             eccCCcCHHHHHHHHHHHHh
Confidence            99 68999999999998763

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=1.7e-32  Score=197.15  Aligned_cols=166  Identities=33%  Similarity=0.536  Sum_probs=126.4

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (208)
                      |+..+.+||+|+|.+|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++++|
T Consensus         3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   81 (182)
T 3bwd_D            3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGAD   81 (182)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCS
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCC
Confidence            45577899999999999999999999998887776666654332 23445566678889999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCccC----------cCHHHHHHHHHHcCC-eEEEe
Q 028466           84 VAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKRQ----------VSIEEGEAKARELNV-MFIET  151 (208)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~  151 (208)
                      ++++|||++++++++.+. .|+..+.... .+.|+++|+||+|+.+...          +...++..++..++. .++++
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  160 (182)
T 3bwd_D           82 VFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIEC  160 (182)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEE
Confidence            999999999999999987 6888877654 4799999999999966543          367788889988886 99999


Q ss_pred             ecCCCCCHHHHHHHHHHHcC
Q 028466          152 SAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       152 S~~~~~~v~~~~~~l~~~~~  171 (208)
                      ||+++.|++++|++|.+.+.
T Consensus       161 Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          161 SSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             CTTTCTTHHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHHHHh
Confidence            99999999999999998874

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5e-31  Score=193.67  Aligned_cols=164  Identities=33%  Similarity=0.543  Sum_probs=136.6

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      +..+||+|+|.+|+|||||+++|.++.+...+.++.+..+.. .+..++..+.+.+|||||++.+...+..+++++|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            567999999999999999999999998887777776655543 3667888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcCC-eEEEee
Q 028466           87 IVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELNV-MFIETS  152 (208)
Q Consensus        87 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  152 (208)
                      +|||+++++++..+ ..|+..+.... .+.|+++|+||+|+.+.            +.+...+...++...+. .++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999988 67877776643 57999999999999654            34667788888888887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHcCC
Q 028466          153 AKAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       153 ~~~~~~v~~~~~~l~~~~~~  172 (208)
                      |+++.|++++|++|.+.+..
T Consensus       181 A~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999998754

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=4.8e-32  Score=200.98  Aligned_cols=170  Identities=30%  Similarity=0.550  Sum_probs=148.8

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (208)
                      ....+.+||+|+|.+|||||||+++|+.+.+...+.++.+.+........++..+.+.+|||||++.+...+..+++++|
T Consensus        10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   89 (221)
T 3gj0_A           10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ   89 (221)
T ss_dssp             TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred             CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence            34567899999999999999999998888777777788888888888888988899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466           84 VAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF  163 (208)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (208)
                      ++|+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+...  ..+...++...++.++++||+++.|++++|
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  166 (221)
T 3gj0_A           90 CAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF  166 (221)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSS--CGGGCCHHHHHTCEEEECBGGGTBTTTHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccccccc--cHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999988764 4789999999999965433  225566777889999999999999999999


Q ss_pred             HHHHHHcCCCccC
Q 028466          164 RKIAAALPGMETL  176 (208)
Q Consensus       164 ~~l~~~~~~~~~~  176 (208)
                      ++|.+.+...+..
T Consensus       167 ~~l~~~l~~~~~~  179 (221)
T 3gj0_A          167 LWLARKLIGDPNL  179 (221)
T ss_dssp             HHHHHHHHTCTTC
T ss_pred             HHHHHHHHhCccc
Confidence            9999998766544

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=1.7e-31  Score=197.25  Aligned_cols=165  Identities=32%  Similarity=0.542  Sum_probs=122.8

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++++|++|
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            4679999999999999999999999888777667665433 455677888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCcc------------CcCHHHHHHHHHHcCC-eEEEee
Q 028466           87 IVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKR------------QVSIEEGEAKARELNV-MFIETS  152 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S  152 (208)
                      +|||++++++++.+. .|+..+.... .+.|+++|+||+|+.+..            .+...++..++..+++ .++++|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  189 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS  189 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence            999999999999986 7888877654 578999999999997542            5667788899999997 999999


Q ss_pred             cCCCCCHHHHHHHHHHHcCCC
Q 028466          153 AKAGFNIKALFRKIAAALPGM  173 (208)
Q Consensus       153 ~~~~~~v~~~~~~l~~~~~~~  173 (208)
                      |+++.|++++|++|.+.+.+.
T Consensus       190 A~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          190 ARLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999987543

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=5.5e-31  Score=192.58  Aligned_cols=163  Identities=33%  Similarity=0.537  Sum_probs=141.5

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      ...+||+|+|.+|+|||||+++|.++.+...+.++.+.++. ..+.+++..+.+.+|||||++.+...+..+++++|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            35799999999999999999999999988777777766554 34667888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcCC-eEEEee
Q 028466           87 IVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELNV-MFIETS  152 (208)
Q Consensus        87 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  152 (208)
                      +|||+++++++..+ ..|+..+.... .+.|+++|+||+|+.+.            +.+...+...++...+. .++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS  180 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence            99999999999998 67777776543 47999999999999754            34667788899999887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHcC
Q 028466          153 AKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       153 ~~~~~~v~~~~~~l~~~~~  171 (208)
                      |+++.|++++|++|.+.+.
T Consensus       181 A~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          181 AKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            9999999999999998764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.98  E-value=4.4e-31  Score=193.60  Aligned_cols=162  Identities=33%  Similarity=0.526  Sum_probs=138.1

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      ++.+||+|+|.+|+|||||+++|+++.+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++++|++|
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            5689999999999999999999999988777766665 444556677888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCcc------------CcCHHHHHHHHHHcCC-eEEEee
Q 028466           87 IVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKR------------QVSIEEGEAKARELNV-MFIETS  152 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S  152 (208)
                      +|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..            .+...+...++..++. +++++|
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  185 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence            999999999999986 7887777654 679999999999997543            2667788889999886 699999


Q ss_pred             cCCCCCHHHHHHHHHHHc
Q 028466          153 AKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       153 ~~~~~~v~~~~~~l~~~~  170 (208)
                      |+++.|++++|++|.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTTCTTHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998865

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.98  E-value=9.7e-32  Score=195.49  Aligned_cols=165  Identities=22%  Similarity=0.256  Sum_probs=134.9

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCC-----------ccceeeeeeeEEEE-EECCeEEEEEEEecCCchhh
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-----------YQATIGIDFLSKTM-YLEDRTVRLQLWDTAGQERF   71 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~   71 (208)
                      ....+.+||+|+|.+|||||||++.+.+ .+...           +.++.+.++....+ ..++..+.+.+|||||++.+
T Consensus         9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~   87 (198)
T 3t1o_A            9 ANREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY   87 (198)
T ss_dssp             TTTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred             hccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence            3446789999999999999999975554 44333           23455555555544 56677889999999999999


Q ss_pred             ccchhhhhccCCEEEEEEeCC------ChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC
Q 028466           72 RSLIPSYIRDSSVAVIVYDVA------SRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN  145 (208)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~  145 (208)
                      ...+..+++++|++|+|||++      +.+++..+..|+..+. ....+.|+++|+||+|+.+.  ....++++++...+
T Consensus        88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~  164 (198)
T 3t1o_A           88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEG  164 (198)
T ss_dssp             SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTC
T ss_pred             HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcC
Confidence            999999999999999999999      5567777777877763 23367999999999999653  67888899999999


Q ss_pred             C-eEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466          146 V-MFIETSAKAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       146 ~-~~~~~S~~~~~~v~~~~~~l~~~~~~  172 (208)
                      + .++++||+++.|++++|++|.+.+.+
T Consensus       165 ~~~~~~~Sa~~~~gv~~l~~~l~~~i~~  192 (198)
T 3t1o_A          165 KFPVLEAVATEGKGVFETLKEVSRLVLA  192 (198)
T ss_dssp             CSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred             CceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence            8 99999999999999999999988753

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.97  E-value=2.5e-30  Score=187.90  Aligned_cols=164  Identities=31%  Similarity=0.496  Sum_probs=135.0

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCC--CCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh-hccchhhhhccCC
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDK--FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSS   83 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d   83 (208)
                      .+.+||+|+|.+|||||||+++|++..  +...+ ++.+.++....+.+++..+.+.+|||+|.+. +..+...+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            457999999999999999999999643  33333 3455566677778888888999999999876 5556777889999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHH
Q 028466           84 VAVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL  162 (208)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~  162 (208)
                      ++++|||++++++|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+...+...++..+++.++++||++|.|++++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            9999999999999999999988877653 357899999999999776777777888888888999999999999999999


Q ss_pred             HHHHHHHcC
Q 028466          163 FRKIAAALP  171 (208)
Q Consensus       163 ~~~l~~~~~  171 (208)
                      |++|.+.+.
T Consensus       163 f~~l~~~~~  171 (192)
T 2cjw_A          163 FEGIVRQVR  171 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998874

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.97  E-value=3e-31  Score=193.31  Aligned_cols=164  Identities=17%  Similarity=0.256  Sum_probs=128.2

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccC
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   82 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   82 (208)
                      .+..+.+||+|+|.+|||||||+++|+++.+.. .+.++.+...  ..+...+  +.+.+|||||++.+...+..+++++
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~   87 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKGR--VAFTVFDMGGAKKFRGLWETYYDNI   87 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeCC--EEEEEEECCCCHhHHHHHHHHHhcC
Confidence            344678999999999999999999999999877 6677776433  3334433  6899999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHhHHHHHHHHHhhcC--------CCCeEEEEEeCCCCcCccCcCHHHHHHH------HHHcCCeE
Q 028466           83 SVAVIVYDVASRQSFLNTTKWVEEVRTERG--------SDVIIVLVGNKTDLVDKRQVSIEEGEAK------ARELNVMF  148 (208)
Q Consensus        83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~~iivv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~  148 (208)
                      |++|+|||+++++++..+..|+..+.....        .+.|+++|+||+|+.+...  ..++...      +...++.+
T Consensus        88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~  165 (199)
T 4bas_A           88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPFVI  165 (199)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCEEE
T ss_pred             CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCeeEE
Confidence            999999999999999999999888865421        2789999999999975532  2222111      13456789


Q ss_pred             EEeecCCCCCHHHHHHHHHHHcCCC
Q 028466          149 IETSAKAGFNIKALFRKIAAALPGM  173 (208)
Q Consensus       149 ~~~S~~~~~~v~~~~~~l~~~~~~~  173 (208)
                      +++||+++.|++++|++|.+.+.+.
T Consensus       166 ~~~Sa~~g~gv~~l~~~l~~~~~~~  190 (199)
T 4bas_A          166 FASNGLKGTGVHEGFSWLQETASRQ  190 (199)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             EEeeCCCccCHHHHHHHHHHHHHHH
Confidence            9999999999999999999988543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=8.1e-30  Score=186.11  Aligned_cols=166  Identities=36%  Similarity=0.703  Sum_probs=146.5

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      ..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~   83 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   83 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence            46999999999999999999999998887778888888888888899988899999999999999888899999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      |+|+++..++..+..|+..+......+.|+++|+||+|+.+.......+++.++...++.++++|++++.|+++++++|.
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~  163 (199)
T 2f9l_A           84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL  163 (199)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999888898877665556789999999999977677777888999999999999999999999999999999


Q ss_pred             HHcCCC
Q 028466          168 AALPGM  173 (208)
Q Consensus       168 ~~~~~~  173 (208)
                      +.+.+.
T Consensus       164 ~~~~~~  169 (199)
T 2f9l_A          164 TEIYRI  169 (199)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887543

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=8e-30  Score=184.70  Aligned_cols=162  Identities=19%  Similarity=0.283  Sum_probs=129.9

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCC-CCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDK-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (208)
                      ..+.+||+|+|.+|+|||||+++|.+.. +...+.++.+  +....+.+++  +.+.+|||||++.+...+..+++++|+
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~   93 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA   93 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence            3578999999999999999999999887 4555556555  4445555655  689999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhcC---CCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCC
Q 028466           85 AVIVYDVASRQSFLNTTKWVEEVRTERG---SDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAG  156 (208)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~  156 (208)
                      +|+|+|+++++++..+..|+..+.....   .+.|+++|+||+|+...  ....++...+.     ..++.++++||+++
T Consensus        94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  171 (190)
T 2h57_A           94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKG  171 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence            9999999999999999999888876543   47899999999999643  34455555553     23568999999999


Q ss_pred             CCHHHHHHHHHHHcCCC
Q 028466          157 FNIKALFRKIAAALPGM  173 (208)
Q Consensus       157 ~~v~~~~~~l~~~~~~~  173 (208)
                      .|++++|++|.+.+.+.
T Consensus       172 ~gi~~l~~~l~~~i~~~  188 (190)
T 2h57_A          172 EGLQEGVDWLQDQIQTV  188 (190)
T ss_dssp             BTHHHHHHHHHHHC---
T ss_pred             cCHHHHHHHHHHHHHHh
Confidence            99999999999988543

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=1.3e-30  Score=188.68  Aligned_cols=161  Identities=22%  Similarity=0.337  Sum_probs=130.0

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      ..+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++..  +...+  +.+.+|||||++.+...+..+++++|++
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAI   94 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence            3568999999999999999999999998877777777665543  34443  6899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCCCCH
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAGFNI  159 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v  159 (208)
                      |+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+....  ...++.....     ..++.++++||+++.|+
T Consensus        95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv  172 (188)
T 1zd9_A           95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNI  172 (188)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence            99999999999999999988876542 2579999999999996532  2222222221     22457999999999999


Q ss_pred             HHHHHHHHHHcCC
Q 028466          160 KALFRKIAAALPG  172 (208)
Q Consensus       160 ~~~~~~l~~~~~~  172 (208)
                      +++|++|.+.+.+
T Consensus       173 ~~l~~~l~~~~~~  185 (188)
T 1zd9_A          173 DITLQWLIQHSKS  185 (188)
T ss_dssp             HHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998854

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=4.5e-29  Score=181.08  Aligned_cols=164  Identities=36%  Similarity=0.694  Sum_probs=147.8

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      ...++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+++++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            45699999999999999999999999988888899988888888889998888999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      +|+|+++..+++.+..|+..+......+.|+++++||.|+.+.......+++.++.+.++.++++|++++.++++++++|
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l  186 (191)
T 1oix_A          107 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI  186 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999899888888887766555678999999999997766777888999999999999999999999999999999


Q ss_pred             HHHc
Q 028466          167 AAAL  170 (208)
Q Consensus       167 ~~~~  170 (208)
                      .+.+
T Consensus       187 ~~~i  190 (191)
T 1oix_A          187 LTEI  190 (191)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8765

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=8.1e-30  Score=186.03  Aligned_cols=157  Identities=21%  Similarity=0.264  Sum_probs=123.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.++|+++|++|||||||+++|.++.+. .+.++.+..  ...+.+++  +.+.+|||||++.+...+..+++++|+++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            46789999999999999999999988764 344555443  34566666  68999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-----------------cCCeE
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-----------------LNVMF  148 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~  148 (208)
                      +|+|+++++++..+..|+..+.... ..+.|+++|+||+|+..  ....+++.+++..                 .++.+
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            9999999999999999998887542 35799999999999964  4556667666553                 23579


Q ss_pred             EEeecCCCCCHHHHHHHHHHHc
Q 028466          149 IETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       149 ~~~S~~~~~~v~~~~~~l~~~~  170 (208)
                      +++||++|.|++++|++|.+.+
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            9999999999999999998765

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.3e-29  Score=183.14  Aligned_cols=163  Identities=18%  Similarity=0.263  Sum_probs=126.4

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.++|+|+|.+|||||||+++|.++.+. .+.++.+  +....+.+++  +.+.+|||||++.+...+..+++++|++|
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG--SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC--SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999988876 4455554  3344555555  68999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCCCCHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAGFNIK  160 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v~  160 (208)
                      +|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.  ....++.....     ..++.++++||+++.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            9999999999999999998887653 257999999999999643  33444444432     235689999999999999


Q ss_pred             HHHHHHHHHcCCCccC
Q 028466          161 ALFRKIAAALPGMETL  176 (208)
Q Consensus       161 ~~~~~l~~~~~~~~~~  176 (208)
                      +++++|.+.+...+..
T Consensus       167 ~l~~~l~~~~~~~~~~  182 (187)
T 1zj6_A          167 QGLEWMMSRLKIRLEH  182 (187)
T ss_dssp             HHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999998655443

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=1.5e-30  Score=183.95  Aligned_cols=155  Identities=21%  Similarity=0.347  Sum_probs=122.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+++|.+|+|||||+++|.++.+.. +.++.+  +....+...+  +.+.+|||||++.+...+..+++++|++++|+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999888764 345554  3333444443  68999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCCCCHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAGFNIKALF  163 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v~~~~  163 (208)
                      |+++++++..+..|+..+.... ..+.|+++|+||+|+.+..  ...++.....     ..+++++++||+++.|++++|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            9999999999988888876542 3578999999999996532  2222222211     124579999999999999999


Q ss_pred             HHHHHHcC
Q 028466          164 RKIAAALP  171 (208)
Q Consensus       164 ~~l~~~~~  171 (208)
                      ++|.+.+.
T Consensus       154 ~~l~~~i~  161 (164)
T 1r8s_A          154 DWLSNQLR  161 (164)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHHh
Confidence            99999875

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=2e-30  Score=188.33  Aligned_cols=159  Identities=19%  Similarity=0.346  Sum_probs=121.5

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      ..+.+||+|+|.+|||||||+++|+++.+.. +.++.+  +....+...+  +.+.+|||||++.+...+..+++++|++
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i  100 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGL  100 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            4578999999999999999999999887753 344444  3344455554  6899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCCCCH
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAGFNI  159 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v  159 (208)
                      |+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+..  ...++.....     ..++.++++||+++.|+
T Consensus       101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi  178 (192)
T 2b6h_A          101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGL  178 (192)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence            99999999999999999988876533 2579999999999996532  2222222211     12357999999999999


Q ss_pred             HHHHHHHHHHcC
Q 028466          160 KALFRKIAAALP  171 (208)
Q Consensus       160 ~~~~~~l~~~~~  171 (208)
                      +++|++|.+.+.
T Consensus       179 ~~l~~~l~~~i~  190 (192)
T 2b6h_A          179 YDGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            999999999875

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=5.7e-30  Score=182.06  Aligned_cols=158  Identities=21%  Similarity=0.331  Sum_probs=126.4

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      +.++|+|+|.+|+|||||+++|.++.+.. +.++.+  .....+.+++  +.+.+|||||++.+...+..+++.+|++|+
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   80 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   80 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            56999999999999999999999888753 345544  3344455554  689999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHH-----HHcCCeEEEeecCCCCCHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKA-----RELNVMFIETSAKAGFNIKA  161 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~  161 (208)
                      |+|+++++++.....|+..+.... ..+.|+++|+||+|+.+...  ..++....     ...++.++++||+++.|+++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (171)
T 1upt_A           81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLDE  158 (171)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHHH
Confidence            999999999999888888776543 25799999999999965432  22222222     22356899999999999999


Q ss_pred             HHHHHHHHcCC
Q 028466          162 LFRKIAAALPG  172 (208)
Q Consensus       162 ~~~~l~~~~~~  172 (208)
                      ++++|.+.+.+
T Consensus       159 l~~~l~~~i~~  169 (171)
T 1upt_A          159 AMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhh
Confidence            99999998754

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=3.1e-29  Score=180.90  Aligned_cols=160  Identities=22%  Similarity=0.322  Sum_probs=129.1

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.++|+++|.+|+|||||+++|+++. ...+.++.+..  ...+.+++  +.+.+|||||++.+...+..+++++|++|
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            567999999999999999999999888 55566666533  34455554  68999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCCCCHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAGFNIK  160 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v~  160 (208)
                      +|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+..  ...++.....     ..+++++++||+++.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            9999999999999988888876542 2579999999999996542  2333333322     235689999999999999


Q ss_pred             HHHHHHHHHcCCC
Q 028466          161 ALFRKIAAALPGM  173 (208)
Q Consensus       161 ~~~~~l~~~~~~~  173 (208)
                      +++++|.+.+.+.
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988543

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=2.3e-29  Score=182.44  Aligned_cols=156  Identities=22%  Similarity=0.250  Sum_probs=126.8

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.+||+++|++|||||||+++|.++.+. .+.++.+.  ....+.+++  +.+.+|||||++.+...+..+++++|++|
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            45789999999999999999999988875 34455544  345566666  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH------------cCCeEEEeec
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE------------LNVMFIETSA  153 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~S~  153 (208)
                      +|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+  .....++.+.+..            .++.++++||
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            9999999999999999988886543 25799999999999965  4455566555442            3457999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 028466          154 KAGFNIKALFRKIAAA  169 (208)
Q Consensus       154 ~~~~~v~~~~~~l~~~  169 (208)
                      +++.|++++|++|.+.
T Consensus       174 ~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTBSHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHhh
Confidence            9999999999999865

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=1.1e-29  Score=182.70  Aligned_cols=158  Identities=18%  Similarity=0.302  Sum_probs=124.8

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (208)
                      ...+.+||+|+|.+|+|||||+++|.++.+ ..+.++.+..  ...+.+++  +.+.+|||||++.+...+..+++++|+
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF   91 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS--CEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            346789999999999999999999999887 3444555433  34455555  689999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCCCC
Q 028466           85 AVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAGFN  158 (208)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~  158 (208)
                      +|+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.  ....++.....     ..++.++++||+++.|
T Consensus        92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g  169 (181)
T 2h17_A           92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEG  169 (181)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence            999999999999999999888876543 357999999999999653  23344443332     2345899999999999


Q ss_pred             HHHHHHHHHHH
Q 028466          159 IKALFRKIAAA  169 (208)
Q Consensus       159 v~~~~~~l~~~  169 (208)
                      ++++|++|.+.
T Consensus       170 i~~l~~~l~~~  180 (181)
T 2h17_A          170 LCQGLEWMMSR  180 (181)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhh
Confidence            99999999864

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=3.4e-29  Score=180.20  Aligned_cols=159  Identities=21%  Similarity=0.329  Sum_probs=124.8

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.++|+++|.+|||||||+++|.++.+. .+.++.+.  ....+.+++  +.+.+|||||++.+...+..+++++|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe--EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            56799999999999999999999987653 33455543  334455554  68999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCCCCHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAGFNIK  160 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v~  160 (208)
                      +|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+...  ..++.....     ..++.++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            9999999999999988888775542 35789999999999965432  233322211     224579999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028466          161 ALFRKIAAALPG  172 (208)
Q Consensus       161 ~~~~~l~~~~~~  172 (208)
                      ++|++|.+.+.+
T Consensus       167 ~l~~~l~~~~~~  178 (181)
T 1fzq_A          167 DGMNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHHHHHHHh
Confidence            999999998753

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.97  E-value=3.9e-30  Score=185.59  Aligned_cols=165  Identities=22%  Similarity=0.377  Sum_probs=122.4

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcC--CCCCCccceeeeeeeEEEEEE---CCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (208)
                      ++||+|+|++|||||||+++|.+.  .+...+.++.+.++....+..   ++..+.+.+|||+|++.+......+++++|
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            589999999999999999999985  455556677777766655443   234568999999999999999999999999


Q ss_pred             EEEEEEeCCCh-hhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC---HHHHHHHHHHcCCe----EEEeecCC
Q 028466           84 VAVIVYDVASR-QSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS---IEEGEAKARELNVM----FIETSAKA  155 (208)
Q Consensus        84 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~S~~~  155 (208)
                      ++++|||++++ .+++.+..|+..+.... .+.|+++|+||+|+.+.....   ......++..+++.    ++++||++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence            99999999987 57888999998887653 468999999999996543321   22334455555665    99999999


Q ss_pred             CC-CHHHHHHHHHHHcCCCc
Q 028466          156 GF-NIKALFRKIAAALPGME  174 (208)
Q Consensus       156 ~~-~v~~~~~~l~~~~~~~~  174 (208)
                      +. +++++++.|.+.+....
T Consensus       161 ~~~~~~~l~~~i~~~~~~~~  180 (184)
T 2zej_A          161 ESDALAKLRKTIINESLNFK  180 (184)
T ss_dssp             CCHHHHHHHHHHHHHHHCC-
T ss_pred             CchhHHHHHHHHHHHHhccc
Confidence            97 99999999998886544

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=2.9e-29  Score=182.77  Aligned_cols=164  Identities=18%  Similarity=0.202  Sum_probs=121.3

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC-CeEEEEEEEecCCchhhccch---hhhh
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLI---PSYI   79 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~---~~~~   79 (208)
                      ....+.+||+|+|.+|||||||++++.+. +......+.+.........+. +..+.+.+|||+|++.|....   ..++
T Consensus        15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   93 (196)
T 3llu_A           15 YFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF   93 (196)
T ss_dssp             -----CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence            34467899999999999999999987764 332222222222222222332 455789999999999988877   7899


Q ss_pred             ccCCEEEEEEeCCCh--hhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc-------cCcCHHHHHHHHH----HcCC
Q 028466           80 RDSSVAVIVYDVASR--QSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK-------RQVSIEEGEAKAR----ELNV  146 (208)
Q Consensus        80 ~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~-------~~~~~~~~~~~~~----~~~~  146 (208)
                      +++|++|+|||++++  +++..+..|+..+... ..+.|+++|+||+|+.+.       +++.......++.    ..++
T Consensus        94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  172 (196)
T 3llu_A           94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHL  172 (196)
T ss_dssp             HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred             ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCc
Confidence            999999999999986  6777777777776433 357999999999998542       3344455667777    6678


Q ss_pred             eEEEeecCCCCCHHHHHHHHHHHc
Q 028466          147 MFIETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       147 ~~~~~S~~~~~~v~~~~~~l~~~~  170 (208)
                      .++++||++ .|++++|+.|.+.+
T Consensus       173 ~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          173 SFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             EEEEECTTS-THHHHHHHHHHHHT
T ss_pred             ceEEEEech-hhHHHHHHHHHHHh
Confidence            999999999 99999999999875

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.96  E-value=6.1e-30  Score=185.13  Aligned_cols=159  Identities=21%  Similarity=0.298  Sum_probs=126.1

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.+||+|+|.+|+|||||+++|..+.+.. +.++.+  +....+.+++  +.+.+|||||++.+...+..+++++|++|
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            568999999999999999999999887653 344444  3334455554  68999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHH-----HHcCCeEEEeecCCCCCHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKA-----RELNVMFIETSAKAGFNIK  160 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~  160 (208)
                      +|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+...  ..++....     ...++.++++||+++.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            9999999999999888888776543 25799999999999965422  22222222     2234579999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028466          161 ALFRKIAAALPG  172 (208)
Q Consensus       161 ~~~~~l~~~~~~  172 (208)
                      +++++|.+.+.+
T Consensus       173 ~l~~~l~~~i~~  184 (189)
T 2x77_A          173 EGMDWLVERLRE  184 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988743

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.96  E-value=2.9e-28  Score=190.76  Aligned_cols=163  Identities=31%  Similarity=0.504  Sum_probs=141.3

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      ..++|+++|.+|+|||||++++.++.+...+.++.+.. ....+..++..+.+.+|||||++.+...+..+++.+|++|+
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEE-EEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccce-eEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            45899999999999999999999998877777766543 35566788888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcCC-eEEEeec
Q 028466           88 VYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELNV-MFIETSA  153 (208)
Q Consensus        88 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~  153 (208)
                      |||++++.++..+. .|+..+.... .+.|+++|+||+|+.+.            +.+...++..++...++ .++++||
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  311 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  311 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence            99999999999886 6777777654 37999999999998653            45778888999999997 9999999


Q ss_pred             CCCCCHHHHHHHHHHHcCC
Q 028466          154 KAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~  172 (208)
                      +++.|++++|++|.+.+..
T Consensus       312 ~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          312 LTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TTCTTHHHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence            9999999999999988743

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=1.5e-28  Score=174.27  Aligned_cols=155  Identities=17%  Similarity=0.253  Sum_probs=118.3

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc------cchhhhhc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYIR   80 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~   80 (208)
                      |+.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++  ..+.+|||||+..+.      .+...+++
T Consensus         1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~   78 (165)
T 2wji_A            1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII   78 (165)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHh
Confidence            3568999999999999999999998876555556666666666666665  579999999988765      23355554


Q ss_pred             --cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466           81 --DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN  158 (208)
Q Consensus        81 --~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (208)
                        ++|++++|+|+++.+.   ...|+..+..   .+.|+++|+||+|+........ +.+.++..++++++++||+++.|
T Consensus        79 ~~~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~  151 (165)
T 2wji_A           79 NEKPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMG  151 (165)
T ss_dssp             HHCCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBS
T ss_pred             cCCCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCC
Confidence              8999999999987543   3456666554   3689999999999865444332 35677778889999999999999


Q ss_pred             HHHHHHHHHHHc
Q 028466          159 IKALFRKIAAAL  170 (208)
Q Consensus       159 v~~~~~~l~~~~  170 (208)
                      ++++|++|.+.+
T Consensus       152 v~~l~~~l~~~~  163 (165)
T 2wji_A          152 IEELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999999876

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.93  E-value=3.1e-31  Score=194.28  Aligned_cols=162  Identities=33%  Similarity=0.539  Sum_probs=134.7

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++++|++|
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            5679999999999999999999998888766666654333 444556666778899999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCcc------------CcCHHHHHHHHHHcCC-eEEEee
Q 028466           87 IVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKR------------QVSIEEGEAKARELNV-MFIETS  152 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S  152 (208)
                      +|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..            .....++..++...++ .++++|
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS  185 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
Confidence            999999999999876 7777776543 378999999999996542            4455667777788887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHc
Q 028466          153 AKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       153 ~~~~~~v~~~~~~l~~~~  170 (208)
                      |+++.|++++|++|.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
Confidence            999999999999998764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=2.4e-28  Score=175.60  Aligned_cols=158  Identities=22%  Similarity=0.328  Sum_probs=123.5

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.++|+|+|++|+|||||+++|.++.+ ..+.++.+.  ....+.+++  ..+.+|||||++.+...+..+++++|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGF--NVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTC--CEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCcc--ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            5789999999999999999999998877 344455543  334455555  68999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-----cCCeEEEeecCCCCCHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-----LNVMFIETSAKAGFNIK  160 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~v~  160 (208)
                      +|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.  ....++......     .++.++++||+++.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999999888887653 367999999999999653  233444433322     23479999999999999


Q ss_pred             HHHHHHHHHcC
Q 028466          161 ALFRKIAAALP  171 (208)
Q Consensus       161 ~~~~~l~~~~~  171 (208)
                      +++++|.+.+.
T Consensus       169 ~l~~~l~~~~~  179 (183)
T 1moz_A          169 EGLDWLIDVIK  179 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998874

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.96  E-value=3.5e-29  Score=189.47  Aligned_cols=166  Identities=19%  Similarity=0.263  Sum_probs=125.0

Q ss_pred             CCCCCcceeEEEEcCC---------CCcHHHHHHHhhc---CCCCCCcccee-eeeeeEEEE--------------EECC
Q 028466            3 PVSALAKYKLVFLGDQ---------SVGKTSIITRFMY---DKFDNTYQATI-GIDFLSKTM--------------YLED   55 (208)
Q Consensus         3 ~~~~~~~~~i~vvG~~---------~~GKStli~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~   55 (208)
                      |...++.+||+|+|.+         |||||||+++|++   +.+...+.++. +.++....+              ..++
T Consensus        13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   92 (255)
T 3c5h_A           13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC   92 (255)
T ss_dssp             TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred             CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence            3445678999999999         9999999999998   55655555654 444332222              1345


Q ss_pred             eEEEEEEEe-----------------------cCCchhhccchhhhhc---------------------cCCEEEEEEeC
Q 028466           56 RTVRLQLWD-----------------------TAGQERFRSLIPSYIR---------------------DSSVAVIVYDV   91 (208)
Q Consensus        56 ~~~~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~   91 (208)
                      ..+.+.|||                       ++|++.|..++..+++                     ++|++|+|||+
T Consensus        93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~  172 (255)
T 3c5h_A           93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV  172 (255)
T ss_dssp             ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred             cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence            667899999                       6677777777777776                     79999999999


Q ss_pred             CCh--hhHHhHHHHHHHHHhh-cCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-cCCeEEEeecCCCCCHHHHHHHHH
Q 028466           92 ASR--QSFLNTTKWVEEVRTE-RGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-LNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        92 ~~~--~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      +++  ++++.+..|+..+... ...+.|+++|+||+|+.+.+.+  .+++.++.. .++.++++||+++.|++++|++|.
T Consensus       173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~  250 (255)
T 3c5h_A          173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLV  250 (255)
T ss_dssp             BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHH
Confidence            998  8999999999988765 3357999999999999654433  466777766 478999999999999999999998


Q ss_pred             HHc
Q 028466          168 AAL  170 (208)
Q Consensus       168 ~~~  170 (208)
                      +.+
T Consensus       251 ~~l  253 (255)
T 3c5h_A          251 QLI  253 (255)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            876

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.96  E-value=1.9e-27  Score=177.06  Aligned_cols=165  Identities=16%  Similarity=0.143  Sum_probs=117.8

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh---------ccchh
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIP   76 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~   76 (208)
                      +.+.++|+|+|.+|||||||+++|++..+.....+..+.+.....+...+  ..+.+|||||+...         ...+.
T Consensus        26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  103 (228)
T 2qu8_A           26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTIT  103 (228)
T ss_dssp             CTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHH
Confidence            35679999999999999999999998877533334444444444444554  57999999998321         11223


Q ss_pred             hhhccCCEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHH---HHHHHHHHcC--CeEE
Q 028466           77 SYIRDSSVAVIVYDVASRQSFL--NTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIE---EGEAKARELN--VMFI  149 (208)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~  149 (208)
                      .++..+|++|+|+|++++.++.  ....|+..+... ..+.|+++|+||+|+.+..++...   ....++...+  +.++
T Consensus       104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (228)
T 2qu8_A          104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS  182 (228)
T ss_dssp             HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred             HhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence            4578889999999999887664  233455555432 236899999999999766655543   4566666776  8999


Q ss_pred             EeecCCCCCHHHHHHHHHHHcCCC
Q 028466          150 ETSAKAGFNIKALFRKIAAALPGM  173 (208)
Q Consensus       150 ~~S~~~~~~v~~~~~~l~~~~~~~  173 (208)
                      ++||+++.|++++|++|.+.+.+.
T Consensus       183 ~~SA~~g~gi~~l~~~l~~~i~~~  206 (228)
T 2qu8_A          183 SFSTLTGVGVEQAKITACELLKND  206 (228)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999988543

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.95  E-value=6.3e-28  Score=172.60  Aligned_cols=155  Identities=17%  Similarity=0.214  Sum_probs=120.9

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.++|+|+|.+|+|||||+++|+++.+...+.++.+.+.....+.+++  ..+.+|||||++.+...+..++..+|++|
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            4679999999999999999999999988777777777666666777777  45789999999999999999999999999


Q ss_pred             EEEeCCCh---hhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC---------CeEEEeecC
Q 028466           87 IVYDVASR---QSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN---------VMFIETSAK  154 (208)
Q Consensus        87 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~S~~  154 (208)
                      +|+|++++   ++++.+    ..+   ...+.|+++|+||+|+.+.   ...+........+         +.++++||+
T Consensus        84 ~v~d~~~~~~~~~~~~l----~~~---~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  153 (178)
T 2lkc_A           84 LVVAADDGVMPQTVEAI----NHA---KAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAK  153 (178)
T ss_dssp             EEEETTCCCCHHHHHHH----HHH---GGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred             EEEECCCCCcHHHHHHH----HHH---HhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence            99999873   333322    222   2246899999999999653   2233333333221         489999999


Q ss_pred             CCCCHHHHHHHHHHHcCCC
Q 028466          155 AGFNIKALFRKIAAALPGM  173 (208)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~  173 (208)
                      ++.|++++|++|.+.+...
T Consensus       154 ~~~gv~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          154 TKEGLDHLLEMILLVSEME  172 (178)
T ss_dssp             SSHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHhhhhh
Confidence            9999999999999887543

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.95  E-value=3.4e-27  Score=173.91  Aligned_cols=161  Identities=22%  Similarity=0.316  Sum_probs=114.1

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCe-EEEEEEEecCCchhhcc-chhhhhccCCE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQERFRS-LIPSYIRDSSV   84 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~d~   84 (208)
                      .+.+||+|+|.+|+|||||+++|+++.+...+.+ .+.+...  +.+++. .+.+.+|||||++.+.. ++..+++.+|+
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            4679999999999999999999999888766543 3333333  555543 47899999999999988 78888999999


Q ss_pred             EEEEEeCCChh-hHHhHHHHHHHHHhh---cCCCCeEEEEEeCCCCcCccCcC--HHHHHHHHH----------------
Q 028466           85 AVIVYDVASRQ-SFLNTTKWVEEVRTE---RGSDVIIVLVGNKTDLVDKRQVS--IEEGEAKAR----------------  142 (208)
Q Consensus        85 ~i~v~d~~~~~-s~~~~~~~~~~~~~~---~~~~~~iivv~nK~D~~~~~~~~--~~~~~~~~~----------------  142 (208)
                      +|+|||+++.+ ++.....++..+...   ...+.|+++|+||+|+.+.....  ...+.....                
T Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~  161 (214)
T 2fh5_B           82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS  161 (214)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence            99999999854 455555544443322   23568999999999996543311  111111111                


Q ss_pred             -----------------Hc--CCeEEEeecCCC------CCHHHHHHHHHHHc
Q 028466          143 -----------------EL--NVMFIETSAKAG------FNIKALFRKIAAAL  170 (208)
Q Consensus       143 -----------------~~--~~~~~~~S~~~~------~~v~~~~~~l~~~~  170 (208)
                                       .+  ++.|+++||+++      .|++++|++|.+.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~  214 (214)
T 2fh5_B          162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA  214 (214)
T ss_dssp             ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred             ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence                             11  567999999999      99999999998753

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=2.8e-27  Score=183.50  Aligned_cols=161  Identities=22%  Similarity=0.335  Sum_probs=127.0

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCC---CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh-----ccchhhhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-----RSLIPSYI   79 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~   79 (208)
                      ..+||+++|.+|||||||+++|+++...   ..+.+|.+..+  ..+.+++ .+.+.+|||||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~--~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEH--SHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEE--EEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEE--EEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            4689999999999999999999887332   13344444444  3444444 478999999999988     77888899


Q ss_pred             ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCeEEEEEeCCCCcC--ccC----cCHHHHHHHHHHcC---CeE
Q 028466           80 RDSSVAVIVYDVASRQSFLNTTKWVEEVRTER--GSDVIIVLVGNKTDLVD--KRQ----VSIEEGEAKARELN---VMF  148 (208)
Q Consensus        80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~  148 (208)
                      +++|++|+|||++++++++.+..|...+....  ..+.|+++|+||+|+.+  .++    ....++.+++..++   +.+
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999999999999999998877765554332  35799999999999976  333    44577888888887   799


Q ss_pred             EEeecCCCCCHHHHHHHHHHHcCC
Q 028466          149 IETSAKAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       149 ~~~S~~~~~~v~~~~~~l~~~~~~  172 (208)
                      +++||++ .++.++|..+.+.+..
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSLIP  181 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTTCS
T ss_pred             EEeeecC-ChHHHHHHHHHHHHcC
Confidence            9999999 8999999888876643

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.95  E-value=9.8e-28  Score=187.59  Aligned_cols=159  Identities=21%  Similarity=0.337  Sum_probs=121.0

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.+||+|+|.+|+|||||+++|.++.+... .++.+..  ...+...+  +.+.||||||++.+..++..+++.+|++|
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi  237 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI  237 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEE--EEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceE--EEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            3578999999999999999999998887543 3444433  33444544  68999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-----cCCeEEEeecCCCCCHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-----LNVMFIETSAKAGFNIK  160 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~v~  160 (208)
                      +|||+++++++..+..|+..+.... ..++|++||+||+|+.+...  ..++......     .++.++++||+++.|++
T Consensus       238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~  315 (329)
T 3o47_A          238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLY  315 (329)
T ss_dssp             EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence            9999999999999888887776543 25799999999999965432  2333332222     23479999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028466          161 ALFRKIAAALPG  172 (208)
Q Consensus       161 ~~~~~l~~~~~~  172 (208)
                      ++|++|.+.+.+
T Consensus       316 el~~~l~~~l~~  327 (329)
T 3o47_A          316 EGLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998854

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.95  E-value=2.7e-27  Score=170.88  Aligned_cols=161  Identities=16%  Similarity=0.232  Sum_probs=126.6

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc------cchhhh
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSY   78 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~   78 (208)
                      +.++.++|+|+|++|+|||||+++|.+..+.....++.+.+.....+.+++  ..+.+|||||+..+.      .....+
T Consensus         3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~   80 (188)
T 2wjg_A            3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDY   80 (188)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHH
Confidence            346789999999999999999999998776555556666666667777766  679999999998774      344555


Q ss_pred             hc--cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCC
Q 028466           79 IR--DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAG  156 (208)
Q Consensus        79 ~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  156 (208)
                      +.  .+|++++|+|+++   ++....|+..+..   .+.|+++|+||+|+....... ...+.++..+++.++++|++++
T Consensus        81 ~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~  153 (188)
T 2wjg_A           81 IINEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKK  153 (188)
T ss_dssp             HHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGT
T ss_pred             HhccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCC
Confidence            54  4999999999874   4555667666654   468999999999986544433 3567777888899999999999


Q ss_pred             CCHHHHHHHHHHHcCCCc
Q 028466          157 FNIKALFRKIAAALPGME  174 (208)
Q Consensus       157 ~~v~~~~~~l~~~~~~~~  174 (208)
                      .|++++|++|.+.+.+..
T Consensus       154 ~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          154 MGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             BSHHHHHHHHHHHHTTC-
T ss_pred             CCHHHHHHHHHHHHHhcc
Confidence            999999999999987654

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.95  E-value=3.2e-27  Score=171.48  Aligned_cols=161  Identities=16%  Similarity=0.181  Sum_probs=109.9

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCC----------chhhcc
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRS   73 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~   73 (208)
                      ++..+.++|+|+|.+|+|||||+++|++..+...+.++.+.+........+.   .+.+|||||          ++.+..
T Consensus        18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~   94 (195)
T 1svi_A           18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGR   94 (195)
T ss_dssp             SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHH
Confidence            3445679999999999999999999998876554445444444444444443   589999999          777777


Q ss_pred             chhhhhccC---CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCH--HHHHH-HHHHcCCe
Q 028466           74 LIPSYIRDS---SVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSI--EEGEA-KARELNVM  147 (208)
Q Consensus        74 ~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~  147 (208)
                      .+..+++.+   |++++|+|++++.++.... ++..+..   .+.|+++|+||+|+.+..+...  .++.+ +....++.
T Consensus        95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  170 (195)
T 1svi_A           95 MIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE  170 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSE
T ss_pred             HHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCc
Confidence            788888777   9999999999866655432 1222222   4689999999999976544322  22222 22223579


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHcC
Q 028466          148 FIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       148 ~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      ++++||+++.|+++++++|.+.+.
T Consensus       171 ~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          171 LILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             eEEEEccCCCCHHHHHHHHHHHhc
Confidence            999999999999999999998774

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.94  E-value=1.3e-25  Score=174.20  Aligned_cols=169  Identities=15%  Similarity=0.178  Sum_probs=129.7

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEEC-CeEEEEEEEecCCchhhc---------
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFR---------   72 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~---------   72 (208)
                      .++++.-.|+++|.+|+|||||+|+|++..+.. ...+..+..........+ +  .++.||||||+..+.         
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~   82 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSM   82 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHH
Confidence            345677899999999999999999999988753 333444444444444454 4  679999999986543         


Q ss_pred             -cchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC--CeEE
Q 028466           73 -SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN--VMFI  149 (208)
Q Consensus        73 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~  149 (208)
                       .....+++.+|++++|+|++++.+......|+..+..   .+.|+++|+||+|+.............+...++  ..++
T Consensus        83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~  159 (308)
T 3iev_A           83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV  159 (308)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred             HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence             5667788999999999999987777776666666654   358999999999997444555666677777765  7899


Q ss_pred             EeecCCCCCHHHHHHHHHHHcCCCccCC
Q 028466          150 ETSAKAGFNIKALFRKIAAALPGMETLS  177 (208)
Q Consensus       150 ~~S~~~~~~v~~~~~~l~~~~~~~~~~~  177 (208)
                      ++||+++.|+++++++|.+.+++.+...
T Consensus       160 ~vSA~~g~gv~~L~~~l~~~l~~~~~~~  187 (308)
T 3iev_A          160 PISALKGANLDELVKTILKYLPEGEPLF  187 (308)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHSCBCCCSS
T ss_pred             EEeCCCCCCHHHHHHHHHHhCccCCCCC
Confidence            9999999999999999999997655433

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.94  E-value=1.5e-26  Score=162.76  Aligned_cols=150  Identities=20%  Similarity=0.188  Sum_probs=107.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchh-------hccchhhhhcc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRD   81 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~   81 (208)
                      .||+++|.+|+|||||+++|.+..+. ....++.+.+.....+..++.  .+.+|||||+..       +...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            68999999999999999999988753 233445555566666666663  689999999886       34455667899


Q ss_pred             CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCCHH
Q 028466           82 SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFNIK  160 (208)
Q Consensus        82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~  160 (208)
                      +|++|+|+|++++.+..  ..++..+...  .+.|+++|+||+|+.+..    .++..++ .+++ .++++||+++.|++
T Consensus        80 ~~~~i~v~d~~~~~~~~--~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQA--DYEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             CSEEEEEEESSSCCCHH--HHHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCcccHh--HHHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence            99999999998753322  2233333322  358999999999996542    2233344 5676 89999999999999


Q ss_pred             HHHHHHHHHc
Q 028466          161 ALFRKIAAAL  170 (208)
Q Consensus       161 ~~~~~l~~~~  170 (208)
                      ++|++|.+.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999999876

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.94  E-value=9.7e-27  Score=166.05  Aligned_cols=155  Identities=18%  Similarity=0.183  Sum_probs=115.3

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc--------hhhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY   78 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~   78 (208)
                      +.++|+|+|.+|+|||||+++|.+..+. ....++.+.++....+.+++  ..+.+|||||+..+...        ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            4589999999999999999999987643 23344555666667777776  35899999998653221        1245


Q ss_pred             hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466           79 IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN  158 (208)
Q Consensus        79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (208)
                      ++.+|++++|+|++++.+++ ...|+..+......+.|+++|+||+|+.+....       ++...+..++++||+++.|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-------~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETLG-------MSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCTTTCTT
T ss_pred             HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchhh-------hhhccCCceEEEeCCCCCC
Confidence            78999999999999877765 346777776655567999999999998543110       1112356899999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 028466          159 IKALFRKIAAALPG  172 (208)
Q Consensus       159 v~~~~~~l~~~~~~  172 (208)
                      ++++|++|.+.+..
T Consensus       153 v~~l~~~l~~~~~~  166 (172)
T 2gj8_A          153 VDVLRNHLKQSMGF  166 (172)
T ss_dssp             HHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999998743

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=3.1e-26  Score=173.36  Aligned_cols=156  Identities=19%  Similarity=0.212  Sum_probs=122.9

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc------hhhhh-
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYI-   79 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~-   79 (208)
                      ++.++|+|+|.+|||||||+|+|++..+.....++.+.+.....+...+  ..+.+|||||+..+...      ...++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            5679999999999999999999998877555556666666666666655  67999999999877652      24555 


Q ss_pred             -ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466           80 -RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN  158 (208)
Q Consensus        80 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (208)
                       ..+|++|+|+|+++.++..   .|...+..   .+.|+++|+||+|+........ ....++..++++++++||+++.|
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g  153 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG  153 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred             hcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence             5899999999999865443   34444443   3699999999999865544433 46778888899999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028466          159 IKALFRKIAAALP  171 (208)
Q Consensus       159 v~~~~~~l~~~~~  171 (208)
                      +++++++|.+.+.
T Consensus       154 i~el~~~i~~~~~  166 (258)
T 3a1s_A          154 LEELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=5.8e-27  Score=169.26  Aligned_cols=156  Identities=23%  Similarity=0.301  Sum_probs=115.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCC-----------chhhccchhhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-----------QERFRSLIPSY   78 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~   78 (208)
                      +||+|+|.+|+|||||+++|++..+...+.++.+.+.  ..+.+.    .+.+|||||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999988766666555433  233333    588999999           66777777777


Q ss_pred             hcc-CCEEEEEEeCCChhhHHhH-HHHHHH--------H-HhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCe
Q 028466           79 IRD-SSVAVIVYDVASRQSFLNT-TKWVEE--------V-RTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVM  147 (208)
Q Consensus        79 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------~-~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (208)
                      ++. ++++++++++.+..++..+ ..|...        + ......+.|+++|+||+|+....   ....+.++..++..
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence            776 6655555555555666664 455432        1 22223579999999999996543   55677788887764


Q ss_pred             -------EEEeecCCCCCHHHHHHHHHHHcCCCc
Q 028466          148 -------FIETSAKAGFNIKALFRKIAAALPGME  174 (208)
Q Consensus       148 -------~~~~S~~~~~~v~~~~~~l~~~~~~~~  174 (208)
                             ++++||+++.|++++|++|.+.+.+..
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence                   799999999999999999999885443

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.94  E-value=4.4e-27  Score=181.35  Aligned_cols=156  Identities=18%  Similarity=0.188  Sum_probs=117.2

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCC---CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc---chhhhhccCCE
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---LIPSYIRDSSV   84 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~   84 (208)
                      ||+++|..|||||||++++.++.++.   ...+|.+.++..  +  + ..+++.||||+|+++|..   .+..|++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999887654432   245666655543  2  2 236899999999999975   46889999999


Q ss_pred             EEEEEeCCCh--hhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc-------cCcCHHHHHHHHHH----cCCeEEEe
Q 028466           85 AVIVYDVASR--QSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK-------RQVSIEEGEAKARE----LNVMFIET  151 (208)
Q Consensus        85 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~  151 (208)
                      +|+|||++++  +.......|+..+... .++.|+++++||+|+.++       +++...+.+++++.    +++.|+++
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999986  3333344445444433 357999999999999754       23445556666664    57899999


Q ss_pred             ecCCCCCHHHHHHHHHHHcCCC
Q 028466          152 SAKAGFNIKALFRKIAAALPGM  173 (208)
Q Consensus       152 S~~~~~~v~~~~~~l~~~~~~~  173 (208)
                      ||++ .+|.++|..|.+.+...
T Consensus       155 SAkd-~nV~eAFs~iv~~li~~  175 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIPE  175 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSSTT
T ss_pred             ccCC-CcHHHHHHHHHHHHHhh
Confidence            9998 58999999999887643

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.94  E-value=5.4e-27  Score=194.49  Aligned_cols=167  Identities=20%  Similarity=0.344  Sum_probs=126.8

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEE------E--EECCeEEEEEEEecCCchhhccchh
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKT------M--YLEDRTVRLQLWDTAGQERFRSLIP   76 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~i~D~~G~~~~~~~~~   76 (208)
                      ..++.+||+++|.+|||||||+++|++..+...+.++.+.++....      +  ..++..+.+.+|||||++.+.....
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            4577899999999999999999999999888777788776665432      1  1223346899999999999999999


Q ss_pred             hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCC
Q 028466           77 SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAG  156 (208)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  156 (208)
                      .+++.+|++|+|+|+++.   +....|+..+.... .+.|+++|+||+|+.+..+....+++..+...+++++++||+++
T Consensus       117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g  192 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG  192 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred             HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence            999999999999999754   45677877777654 46899999999999877777888888888888999999999999


Q ss_pred             CCHHHHHHHHHHHcCCCcc
Q 028466          157 FNIKALFRKIAAALPGMET  175 (208)
Q Consensus       157 ~~v~~~~~~l~~~~~~~~~  175 (208)
                      .|++++++.|.+.+...+.
T Consensus       193 ~gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          193 DGVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             --CTTHHHHHHHHHTCTTS
T ss_pred             cCHHHHHHHHHHHHhcccc
Confidence            9999999999999876544

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.94  E-value=1.2e-26  Score=177.09  Aligned_cols=158  Identities=18%  Similarity=0.205  Sum_probs=121.7

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc----------chh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------LIP   76 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~   76 (208)
                      |++++|+++|.+|+|||||+|+|++..+.....++.+.+.....+...+  ..+.+|||||+..+..          ...
T Consensus         1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~   78 (274)
T 3i8s_A            1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIAC   78 (274)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHH
Confidence            4579999999999999999999998877556667777777777777665  4688999999887662          222


Q ss_pred             hhh--ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecC
Q 028466           77 SYI--RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAK  154 (208)
Q Consensus        77 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  154 (208)
                      .++  +.+|++|+|+|+++.+....+..+   +...   +.|+++|+||+|+.+..... .....+...++++++++||+
T Consensus        79 ~~~~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~  151 (274)
T 3i8s_A           79 HYILSGDADLLINVVDASNLERNLYLTLQ---LLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVST  151 (274)
T ss_dssp             HHHHHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCG
T ss_pred             HHHhhcCCCEEEEEecCCChHHHHHHHHH---HHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcC
Confidence            333  799999999999876555443333   3332   58999999999986543322 23466777789999999999


Q ss_pred             CCCCHHHHHHHHHHHcCCC
Q 028466          155 AGFNIKALFRKIAAALPGM  173 (208)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~  173 (208)
                      +|.|+++++++|.+.+...
T Consensus       152 ~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          152 RGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             GGHHHHHHHHHHHTCCCCC
T ss_pred             CCCCHHHHHHHHHHHHhcC
Confidence            9999999999999888654

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.94  E-value=1.5e-25  Score=162.45  Aligned_cols=159  Identities=19%  Similarity=0.284  Sum_probs=113.2

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCC----------chhhcc
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRS   73 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~   73 (208)
                      .+....++|+|+|.+|+|||||+++|++..+. ...++.+.+........+.   .+.+|||||          ++.+..
T Consensus        18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (195)
T 3pqc_A           18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKR   93 (195)
T ss_dssp             CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHH
Confidence            44466799999999999999999999988743 2233333333333333333   578999999          666777


Q ss_pred             chhhhhccC---CEEEEEEeCCChhhH--HhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC--cCHHHHHHHHHHcC-
Q 028466           74 LIPSYIRDS---SVAVIVYDVASRQSF--LNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ--VSIEEGEAKARELN-  145 (208)
Q Consensus        74 ~~~~~~~~~---d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~-  145 (208)
                      .+..+++.+   |++++|+|+++..+.  ..+..|+..      .+.|+++|+||+|+.+..+  ....++..++...+ 
T Consensus        94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  167 (195)
T 3pqc_A           94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE  167 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC
Confidence            777777776   999999999864322  223333322      2589999999999964432  23345556666544 


Q ss_pred             CeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466          146 VMFIETSAKAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       146 ~~~~~~S~~~~~~v~~~~~~l~~~~~~  172 (208)
                      ++++++||+++.|++++|++|.+.+.+
T Consensus       168 ~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          168 YTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             SCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            699999999999999999999998753

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.93  E-value=4.2e-26  Score=172.38  Aligned_cols=151  Identities=16%  Similarity=0.205  Sum_probs=119.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc----------chhhhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------LIPSYI   79 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~   79 (208)
                      .+|+++|.+|||||||+|+|++........++.+.+.....+.+++.  .+.+|||||+..+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999988766566677777777777777774  799999999887654          445566


Q ss_pred             --ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCC
Q 028466           80 --RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGF  157 (208)
Q Consensus        80 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  157 (208)
                        ..+|++|+|+|+++.+....+..+   +.   ..+.|+++|+||+|+.+...... ....+...++++++++||+++.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~---~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQ---LF---ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHH---HT---TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHH---HH---HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence              899999999999986555443332   22   23689999999999865443322 3455677789999999999999


Q ss_pred             CHHHHHHHHHHH
Q 028466          158 NIKALFRKIAAA  169 (208)
Q Consensus       158 ~v~~~~~~l~~~  169 (208)
                      |+++++++|.+.
T Consensus       153 gi~el~~~i~~~  164 (256)
T 3iby_A          153 GIPALQQSLLHC  164 (256)
T ss_dssp             SHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999999987

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.93  E-value=4.8e-26  Score=173.32  Aligned_cols=154  Identities=14%  Similarity=0.171  Sum_probs=116.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc------cchhhhhc--
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYIR--   80 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--   80 (208)
                      .++|+++|.+|||||||+|+|++........++.+.+....  .+.. ...+.+|||||+..+.      .....++.  
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~--~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~   79 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSG--LVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ   79 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEE--ECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEE--EEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence            58999999999999999999998765444445544443333  3343 4579999999998775      34556665  


Q ss_pred             cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466           81 DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK  160 (208)
Q Consensus        81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (208)
                      .+|++|+|+|+++.+..   ..|...+..   .+.|+++|+||+|+....... .....++..++++++++||+++.|++
T Consensus        80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~  152 (272)
T 3b1v_A           80 RADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVD  152 (272)
T ss_dssp             CCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHH
T ss_pred             CCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHH
Confidence            69999999999876544   345444543   368999999999986544333 34567778889999999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028466          161 ALFRKIAAALPG  172 (208)
Q Consensus       161 ~~~~~l~~~~~~  172 (208)
                      ++|++|.+.+..
T Consensus       153 el~~~i~~~~~~  164 (272)
T 3b1v_A          153 QVVKKAAHTTTS  164 (272)
T ss_dssp             HHHHHHHHSCTT
T ss_pred             HHHHHHHHHHhh
Confidence            999999987643

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.93  E-value=1.7e-25  Score=170.69  Aligned_cols=159  Identities=23%  Similarity=0.241  Sum_probs=123.9

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc------chhhhh-
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSYI-   79 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~-   79 (208)
                      |+.++|+|+|++|+|||||+++|++..+.....++.+.+.....+.+.+  ..+.+|||||+..+..      ....++ 
T Consensus         1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   78 (271)
T 3k53_A            1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFIL   78 (271)
T ss_dssp             CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhh
Confidence            4579999999999999999999998877555667777777777777777  4599999999887766      455555 


Q ss_pred             -ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466           80 -RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN  158 (208)
Q Consensus        80 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (208)
                       .++|++|+|+|+++.+   ....+...+...  ...|+++|+||+|+.+...... ....+...++++++++|++++.|
T Consensus        79 ~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~g  152 (271)
T 3k53_A           79 DGNADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEG  152 (271)
T ss_dssp             TTCCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBT
T ss_pred             ccCCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCC
Confidence             6899999999998753   333333444332  1289999999999865433333 26677778899999999999999


Q ss_pred             HHHHHHHHHHHcCCC
Q 028466          159 IKALFRKIAAALPGM  173 (208)
Q Consensus       159 v~~~~~~l~~~~~~~  173 (208)
                      ++++++.|.+.+...
T Consensus       153 i~~l~~~i~~~~~~~  167 (271)
T 3k53_A          153 VEELKRMIALMAEGK  167 (271)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999987543

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.93  E-value=1.4e-25  Score=166.25  Aligned_cols=164  Identities=13%  Similarity=0.105  Sum_probs=110.0

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcCCCC--CCccceeeeeeeEEEEEEC-CeEEEEEEEecCCc----------hhh
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD--NTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQ----------ERF   71 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~----------~~~   71 (208)
                      .....++|+|+|.+|+|||||+++|++....  ....+..+.+..  ..... .....+.||||||.          +.+
T Consensus        25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~  102 (223)
T 4dhe_A           25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN--YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW  102 (223)
T ss_dssp             CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEE--EEEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceE--EEEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence            3456799999999999999999999988732  222233333322  23333 23357999999994          445


Q ss_pred             ccchhhhhcc---CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc--CHHHHHHHHHH---
Q 028466           72 RSLIPSYIRD---SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV--SIEEGEAKARE---  143 (208)
Q Consensus        72 ~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~---  143 (208)
                      ......+++.   +|++|+|+|++++.+. ....++..+..   .+.|+++|+||+|+.+..+.  ...++.+....   
T Consensus       103 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~  178 (223)
T 4dhe_A          103 EQLLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD  178 (223)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence            5666666666   7889999999864221 12333444433   35899999999999654332  12223333333   


Q ss_pred             ----cCCeEEEeecCCCCCHHHHHHHHHHHcCCCc
Q 028466          144 ----LNVMFIETSAKAGFNIKALFRKIAAALPGME  174 (208)
Q Consensus       144 ----~~~~~~~~S~~~~~~v~~~~~~l~~~~~~~~  174 (208)
                          .+.+++++||+++.|+++++++|.+.+....
T Consensus       179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence                4568999999999999999999999986543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.93  E-value=1e-24  Score=168.40  Aligned_cols=163  Identities=19%  Similarity=0.164  Sum_probs=114.2

Q ss_pred             CCCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCCchh--------h
Q 028466            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------F   71 (208)
Q Consensus         1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~   71 (208)
                      |++.  .+..+|+|+|.+|+|||||+|+|++..+.. ...+..+.+........++  .++.||||||+..        +
T Consensus         1 m~~~--~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~   76 (301)
T 1wf3_A            1 MAEK--TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFM   76 (301)
T ss_dssp             --CC--CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHH
T ss_pred             CCCC--ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHH
Confidence            4553  567889999999999999999999988753 2233333333333333443  6799999999876        4


Q ss_pred             ccchhhhhccCCEEEEEEeCCChhhHHhHHHHH-HHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc--CCeE
Q 028466           72 RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWV-EEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL--NVMF  148 (208)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~  148 (208)
                      ......+++.+|++++|+|++++.+..  ..|+ ..+... ..+.|+++|+||+|+......    +...+..+  ...+
T Consensus        77 ~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~  149 (301)
T 1wf3_A           77 DQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPEE----AMKAYHELLPEAEP  149 (301)
T ss_dssp             HHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHH----HHHHHHHTSTTSEE
T ss_pred             HHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchHH----HHHHHHHhcCcCcE
Confidence            455667889999999999998753332  3444 334332 246899999999999643220    22333332  3579


Q ss_pred             EEeecCCCCCHHHHHHHHHHHcCCCc
Q 028466          149 IETSAKAGFNIKALFRKIAAALPGME  174 (208)
Q Consensus       149 ~~~S~~~~~~v~~~~~~l~~~~~~~~  174 (208)
                      +++||+++.|+++++++|.+.+++.+
T Consensus       150 ~~iSA~~g~gv~~l~~~l~~~l~~~~  175 (301)
T 1wf3_A          150 RMLSALDERQVAELKADLLALMPEGP  175 (301)
T ss_dssp             EECCTTCHHHHHHHHHHHHTTCCBCC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhcccCC
Confidence            99999999999999999999886544

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.92  E-value=4.9e-26  Score=168.14  Aligned_cols=147  Identities=17%  Similarity=0.229  Sum_probs=107.5

Q ss_pred             CCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCC---CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhh
Q 028466            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI   79 (208)
Q Consensus         3 ~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   79 (208)
                      .....+.++|+|+|++|+|||||+++|.+..+..   .+.++.+.++         ....+.+|||||++.+...+..++
T Consensus         6 ~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~   76 (218)
T 1nrj_B            6 IKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYL   76 (218)
T ss_dssp             ----CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHH
T ss_pred             CCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHH
Confidence            3344578999999999999999999999887654   2344444332         235789999999999998888888


Q ss_pred             cc----CCEEEEEEeCC-ChhhHHhHHHHHHHHHhh----cCCCCeEEEEEeCCCCcCccCcC------HHHHHHHHHHc
Q 028466           80 RD----SSVAVIVYDVA-SRQSFLNTTKWVEEVRTE----RGSDVIIVLVGNKTDLVDKRQVS------IEEGEAKAREL  144 (208)
Q Consensus        80 ~~----~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~~iivv~nK~D~~~~~~~~------~~~~~~~~~~~  144 (208)
                      +.    +|++|+|+|++ +++++.....|+..+...    ...+.|+++|+||+|+.......      ..++..++...
T Consensus        77 ~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~  156 (218)
T 1nrj_B           77 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERR  156 (218)
T ss_dssp             HHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            87    89999999999 888898888888877654    33579999999999997655433      34556666666


Q ss_pred             CCeEEEeecCCCCC
Q 028466          145 NVMFIETSAKAGFN  158 (208)
Q Consensus       145 ~~~~~~~S~~~~~~  158 (208)
                      ++.++++|++++.+
T Consensus       157 ~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          157 KKSLNEVERKINEE  170 (218)
T ss_dssp             HHHHHC--------
T ss_pred             hccccccccccccc
Confidence            78899999998865

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.91  E-value=3.5e-24  Score=174.36  Aligned_cols=157  Identities=17%  Similarity=0.152  Sum_probs=99.9

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCC-CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccch--------hhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------PSY   78 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~   78 (208)
                      ..++|+|+|.+|+|||||+|+|++... .....++.+.+.....+.+++  +.+.+|||||+..+...+        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            358999999999999999999998754 234456667777777777777  579999999987765443        336


Q ss_pred             hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466           79 IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN  158 (208)
Q Consensus        79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (208)
                      ++.+|++++|+|++++.+++.+..+...+....  +.|+++|+||+|+.+....   ..+.+......+++++||+++.|
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~G  384 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDG  384 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCC
Confidence            789999999999998877654333333232222  6999999999999765432   22233333247899999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028466          159 IKALFRKIAAALP  171 (208)
Q Consensus       159 v~~~~~~l~~~~~  171 (208)
                      +++++++|.+.+.
T Consensus       385 I~eL~~~i~~~~~  397 (476)
T 3gee_A          385 IDTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999886

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.91  E-value=6.6e-25  Score=175.92  Aligned_cols=160  Identities=21%  Similarity=0.213  Sum_probs=117.6

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc-------hh
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------IP   76 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~   76 (208)
                      .....++|+|+|..|+|||||+++|++..+. ....++.+++.....+.+.+.. .+.+|||||++.+...       ..
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHH
Confidence            3456799999999999999999999988763 3445566667777777776643 7999999999877654       35


Q ss_pred             hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCC
Q 028466           77 SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAG  156 (208)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  156 (208)
                      .++..+|++|+|+|++..   .....|+..+...   +.|+++|+||+|+......  ...+.+...++++++++||+++
T Consensus       109 ~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg  180 (423)
T 3qq5_A          109 RVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQK  180 (423)
T ss_dssp             HHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCT
T ss_pred             HHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCC
Confidence            578899999999999432   2335566655543   6899999999999765443  4556666677889999999999


Q ss_pred             CCHHHHHHHHHHHcCCC
Q 028466          157 FNIKALFRKIAAALPGM  173 (208)
Q Consensus       157 ~~v~~~~~~l~~~~~~~  173 (208)
                      .|++++|++|.+.+.+.
T Consensus       181 ~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          181 KGFDDIGKTISEILPGD  197 (423)
T ss_dssp             TSTTTHHHHHHHHSCCC
T ss_pred             CCHHHHHHHHHHhhhhh
Confidence            99999999999999655

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.91  E-value=2.3e-24  Score=174.60  Aligned_cols=162  Identities=22%  Similarity=0.226  Sum_probs=116.6

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCc----------hhhccch
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSLI   75 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~   75 (208)
                      ...++|+++|.+|||||||+|+|++.... ....++.+.+.....+.+++.  .+.+|||||+          +.|....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            35699999999999999999999988763 344566666776667777774  5899999998          4444433


Q ss_pred             h-hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-H----cCCeEE
Q 028466           76 P-SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-E----LNVMFI  149 (208)
Q Consensus        76 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~  149 (208)
                      . .+++.+|++++|+|++++.+++.. .|+..+..   .+.|+++|+||+|+.+..+....+...... .    .+++++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~  326 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  326 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence            2 478899999999999987666654 45555543   468999999999997655543334433332 2    257999


Q ss_pred             EeecCCCCCHHHHHHHHHHHcCCCc
Q 028466          150 ETSAKAGFNIKALFRKIAAALPGME  174 (208)
Q Consensus       150 ~~S~~~~~~v~~~~~~l~~~~~~~~  174 (208)
                      ++||++|.|++++|+.+.+.+....
T Consensus       327 ~~SA~tg~~v~~l~~~i~~~~~~~~  351 (436)
T 2hjg_A          327 FMSALTKKRIHTLMPAIIKASENHS  351 (436)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             EEecccCCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999998876543

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.91  E-value=4.5e-23  Score=163.01  Aligned_cols=161  Identities=21%  Similarity=0.189  Sum_probs=120.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc---------cchhh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---------SLIPS   77 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~   77 (208)
                      ...++|+++|.+|+|||||+++|.+........+..+.+.....+...+  ..+.+|||||...+.         .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            4568999999999999999999998775332233333344444444443  579999999975432         11223


Q ss_pred             hhccCCEEEEEEeCCChh--hHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCC
Q 028466           78 YIRDSSVAVIVYDVASRQ--SFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKA  155 (208)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  155 (208)
                      +...+|++++|+|++++.  +++....|+..+..... +.|+++|+||+|+.....  ..+...++...+++++++||++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~  319 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALK  319 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCC
Confidence            445799999999998776  67777888888876543 699999999999965433  2455666677788999999999


Q ss_pred             CCCHHHHHHHHHHHcCC
Q 028466          156 GFNIKALFRKIAAALPG  172 (208)
Q Consensus       156 ~~~v~~~~~~l~~~~~~  172 (208)
                      |+|+++++++|.+.+.+
T Consensus       320 g~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          320 GTGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             TBTHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            99999999999988743

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.91  E-value=5.5e-23  Score=165.19  Aligned_cols=169  Identities=21%  Similarity=0.211  Sum_probs=107.9

Q ss_pred             CCCCCcceeEEEEcCCCCcHHHHHHHhhcC---CCCCCccceeeeeee--EEEEEE-------------C--C----eEE
Q 028466            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYD---KFDNTYQATIGIDFL--SKTMYL-------------E--D----RTV   58 (208)
Q Consensus         3 ~~~~~~~~~i~vvG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~--~~~~~~-------------~--~----~~~   58 (208)
                      |+.....++|+++|+.++|||||+++|++.   .+..++.+.++++..  ...+..             +  +    ...
T Consensus         2 p~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~   81 (408)
T 1s0u_A            2 PLGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLR   81 (408)
T ss_dssp             ---CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEE
T ss_pred             CcccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCccccccc
Confidence            566667899999999999999999999854   334444454444332  222211             1  1    136


Q ss_pred             EEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC--cCHHH
Q 028466           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ--VSIEE  136 (208)
Q Consensus        59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~  136 (208)
                      .+.||||||++.|.......+..+|++|+|+|++++....+..+.+..+...  ...|+++++||+|+.+..+  ...++
T Consensus        82 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~  159 (408)
T 1s0u_A           82 RVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL--GIDKIIIVQNKIDLVDEKQAEENYEQ  159 (408)
T ss_dssp             EEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc--CCCeEEEEEEccCCCCHHHHHHHHHH
Confidence            8999999999999988888888999999999998532112222222223222  1257999999999976443  23456


Q ss_pred             HHHHHHHc---CCeEEEeecCCCCCHHHHHHHHHHHcCCC
Q 028466          137 GEAKAREL---NVMFIETSAKAGFNIKALFRKIAAALPGM  173 (208)
Q Consensus       137 ~~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~~~~~  173 (208)
                      +++++..+   +++++++||++++|+++++++|.+.++..
T Consensus       160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~  199 (408)
T 1s0u_A          160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP  199 (408)
T ss_dssp             HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred             HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence            66666653   57899999999999999999999987643

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.90  E-value=6.1e-24  Score=172.99  Aligned_cols=165  Identities=21%  Similarity=0.224  Sum_probs=122.0

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCC-CCCccceeeeeeeEEEEEECCeEEEEEEEecCC----------chhhccch
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSLI   75 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~   75 (208)
                      ...++|+++|.+|+|||||+++|++... .....++.+.+.....+..++.  .+.+|||||          ++.|....
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence            4579999999999999999999997653 3344556666666667777774  699999999          56666654


Q ss_pred             h-hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc-----CCeEE
Q 028466           76 P-SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL-----NVMFI  149 (208)
Q Consensus        76 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~  149 (208)
                      . .+++.+|++|+|+|++++-. +....|+..+..   .+.|+++|+||+|+.+..+....++.+.+.+.     +++++
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  346 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence            4 47899999999999986422 222334444433   45899999999999876666667777777665     57999


Q ss_pred             EeecCCCCCHHHHHHHHHHHcCCCccCC
Q 028466          150 ETSAKAGFNIKALFRKIAAALPGMETLS  177 (208)
Q Consensus       150 ~~S~~~~~~v~~~~~~l~~~~~~~~~~~  177 (208)
                      ++||++|.|++++|++|.+.+.......
T Consensus       347 ~~SA~~g~gv~~l~~~i~~~~~~~~~~~  374 (456)
T 4dcu_A          347 FMSALTKKRIHTLMPAIIKASENHSLRV  374 (456)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHHTCCC
T ss_pred             EEcCCCCcCHHHHHHHHHHHHHHhcccC
Confidence            9999999999999999998875554443

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.90  E-value=1.3e-23  Score=170.33  Aligned_cols=154  Identities=19%  Similarity=0.229  Sum_probs=105.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchh---------hccchhhhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSYI   79 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~   79 (208)
                      .+|+|+|.+|||||||+|+|++.... ....++.+.+.....+.+++.  .+.+|||||++.         +...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            47999999999999999999988753 344567777777788888774  589999999764         344567789


Q ss_pred             ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHH-HHHHHHcCC-eEEEeecCCCC
Q 028466           80 RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEG-EAKARELNV-MFIETSAKAGF  157 (208)
Q Consensus        80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~S~~~~~  157 (208)
                      +.+|++++|+|+.++-+..  ..++..+...  .++|+++|+||+|+....   ..+. ..+. .++. .++++||++|.
T Consensus        80 ~~ad~il~V~D~~~~~~~~--d~~i~~~l~~--~~~p~ilv~NK~D~~~~~---~~~~~~~~~-~lg~~~~~~iSA~~g~  151 (439)
T 1mky_A           80 READLVLFVVDGKRGITKE--DESLADFLRK--STVDTILVANKAENLREF---EREVKPELY-SLGFGEPIPVSAEHNI  151 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHH--HHHHHHHHHH--HTCCEEEEEESCCSHHHH---HHHTHHHHG-GGSSCSCEECBTTTTB
T ss_pred             HhCCEEEEEEECCCCCCHH--HHHHHHHHHH--cCCCEEEEEeCCCCcccc---HHHHHHHHH-hcCCCCEEEEeccCCC
Confidence            9999999999998643332  2223332222  258999999999985321   1222 2332 4565 78999999999


Q ss_pred             CHHHHHHHHHHHcCCC
Q 028466          158 NIKALFRKIAAALPGM  173 (208)
Q Consensus       158 ~v~~~~~~l~~~~~~~  173 (208)
                      |+++++++|.+.+++.
T Consensus       152 gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          152 NLDTMLETIIKKLEEK  167 (439)
T ss_dssp             SHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhcccc
Confidence            9999999999888643

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.90  E-value=1.1e-23  Score=164.74  Aligned_cols=160  Identities=19%  Similarity=0.151  Sum_probs=119.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh----hccchhhh---hccCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPSY---IRDSS   83 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d   83 (208)
                      +|+|+|.+|+|||||+++|++........+..+.+.....+.+++. ..+.+|||||+..    +..+...+   +..+|
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d  238 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR  238 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence            6889999999999999999977643222333333333444555542 3699999999643    33333444   44599


Q ss_pred             EEEEEEeCCC---hhhHHhHHHHHHHHHhhcC--CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC--CeEEEeecCCC
Q 028466           84 VAVIVYDVAS---RQSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN--VMFIETSAKAG  156 (208)
Q Consensus        84 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~  156 (208)
                      ++|+|+|+++   +++++.+..|+..+..+..  .+.|+++|+||+|+....    +..+.+...+.  ..++++||+++
T Consensus       239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg  314 (342)
T 1lnz_A          239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTR  314 (342)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCC
Confidence            9999999998   6788888888888876542  478999999999996432    34555666665  68999999999


Q ss_pred             CCHHHHHHHHHHHcCCCcc
Q 028466          157 FNIKALFRKIAAALPGMET  175 (208)
Q Consensus       157 ~~v~~~~~~l~~~~~~~~~  175 (208)
                      .|+++++++|.+.+.+.+.
T Consensus       315 ~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          315 EGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             STTHHHHHHHHHHHTSCCC
T ss_pred             cCHHHHHHHHHHHHhhCcc
Confidence            9999999999999976544

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.90  E-value=3.9e-23  Score=168.90  Aligned_cols=158  Identities=22%  Similarity=0.210  Sum_probs=114.2

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcCC-------CCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhh
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYDK-------FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS   77 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   77 (208)
                      ..|+.++|+++|+.++|||||+++|++..       +..+..++++++.....+.+++  +.+.+|||||++.|...+..
T Consensus        15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~   92 (482)
T 1wb1_A           15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS   92 (482)
T ss_dssp             CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred             hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence            34678999999999999999999999776       3445556666666666666666  67999999999999999999


Q ss_pred             hhccCCEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc--CcCHHHHHHHHHHc----CCeE
Q 028466           78 YIRDSSVAVIVYDVAS---RQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR--QVSIEEGEAKAREL----NVMF  148 (208)
Q Consensus        78 ~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~----~~~~  148 (208)
                      ++..+|++|+|+|+++   +++.+.+    ..+..   .+.|+++|+||+|+.+..  +....++..++...    ++++
T Consensus        93 ~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i  165 (482)
T 1wb1_A           93 AADIIDLALIVVDAKEGPKTQTGEHM----LILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI  165 (482)
T ss_dssp             HTTSCCEEEEEEETTTCSCHHHHHHH----HHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred             HHhhCCEEEEEEecCCCccHHHHHHH----HHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence            9999999999999987   3333332    22222   257889999999997532  11234455556555    5789


Q ss_pred             EEeecCCCCCHHHHHHHHHHHcC
Q 028466          149 IETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       149 ~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      +++||++|+|+++++++|.+.+.
T Consensus       166 i~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          166 IPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHhhc
Confidence            99999999999999999999764

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.89  E-value=6.6e-23  Score=166.98  Aligned_cols=152  Identities=21%  Similarity=0.289  Sum_probs=116.3

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCch-hhcc--------chhhh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-RFRS--------LIPSY   78 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~--------~~~~~   78 (208)
                      .++|+|+|.+|+|||||+|+|++.... ....++.+.+.....+.+++  ..+.+|||||+. .+..        ....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            489999999999999999999987642 34456667777777788876  569999999987 5442        23567


Q ss_pred             hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466           79 IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN  158 (208)
Q Consensus        79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (208)
                      ++.+|++|+|+|++++.+++... ++..+     .+.|+++|+||+|+.+.  ....++..++ ..+++++++||+++.|
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKGEG  391 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCCCC
Confidence            89999999999999876665432 22222     36899999999999643  3344444443 2346899999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028466          159 IKALFRKIAAALP  171 (208)
Q Consensus       159 v~~~~~~l~~~~~  171 (208)
                      +++++++|.+.+.
T Consensus       392 i~eL~~~l~~~~~  404 (482)
T 1xzp_A          392 LEKLEESIYRETQ  404 (482)
T ss_dssp             HHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999865

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.89  E-value=6.9e-22  Score=158.54  Aligned_cols=167  Identities=17%  Similarity=0.116  Sum_probs=117.1

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCcccee-ee--------------eeeEEEEEE---CCeEEEEEEEecCC
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI-GI--------------DFLSKTMYL---EDRTVRLQLWDTAG   67 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~-~~--------------~~~~~~~~~---~~~~~~~~i~D~~G   67 (208)
                      ..+.++|+++|.+++|||||+++|++........... +.              +........   ......+.+|||||
T Consensus         5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG   84 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG   84 (403)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence            4567999999999999999999998754322110000 00              000000000   11236899999999


Q ss_pred             chhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc--CHHHHHHHHHHc-
Q 028466           68 QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV--SIEEGEAKAREL-  144 (208)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~-  144 (208)
                      ++.|...+..++..+|++|+|+|++++.++.+..+++..+....  ..|+++|+||+|+.+..+.  ...++.+++..+ 
T Consensus        85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~  162 (403)
T 3sjy_A           85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW  162 (403)
T ss_dssp             CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTST
T ss_pred             cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999998665667777776655443  2589999999999754321  122333333332 


Q ss_pred             --CCeEEEeecCCCCCHHHHHHHHHHHcCCCc
Q 028466          145 --NVMFIETSAKAGFNIKALFRKIAAALPGME  174 (208)
Q Consensus       145 --~~~~~~~S~~~~~~v~~~~~~l~~~~~~~~  174 (208)
                        +++++++||++++|+++++++|.+.++...
T Consensus       163 ~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~  194 (403)
T 3sjy_A          163 AENVPIIPVSALHKINIDSLIEGIEEYIKTPY  194 (403)
T ss_dssp             TTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             CCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence              568999999999999999999999876543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.89  E-value=1.1e-22  Score=164.70  Aligned_cols=153  Identities=18%  Similarity=0.221  Sum_probs=107.4

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcC-------------------------------CCCCCccceeeeeeeEEEEEECC
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYD-------------------------------KFDNTYQATIGIDFLSKTMYLED   55 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~   55 (208)
                      ...++|+++|.+++|||||+++|++.                               ....++.++.+++.....+..++
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~   94 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK   94 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence            45699999999999999999999543                               11223335566666666665555


Q ss_pred             eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhh---HH---hHHHHHHHHHhhcCCCCe-EEEEEeCCCCcC
Q 028466           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQS---FL---NTTKWVEEVRTERGSDVI-IVLVGNKTDLVD  128 (208)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~  128 (208)
                        ..+.||||||++.|...+..++..+|++|+|+|+++...   ++   +..+.+..+..   .+.| +++++||+|+..
T Consensus        95 --~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~~  169 (439)
T 3j2k_7           95 --KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDPT  169 (439)
T ss_pred             --eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCcc
Confidence              589999999999999999999999999999999987421   11   22222222222   2466 899999999853


Q ss_pred             c--cC----cCHHHHHHHHHHcC------CeEEEeecCCCCCHHHHHH
Q 028466          129 K--RQ----VSIEEGEAKARELN------VMFIETSAKAGFNIKALFR  164 (208)
Q Consensus       129 ~--~~----~~~~~~~~~~~~~~------~~~~~~S~~~~~~v~~~~~  164 (208)
                      .  .+    ....++..++..++      ++++++||++|.|+.++++
T Consensus       170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            2  11    11233444444443      4799999999999999655

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.89  E-value=5.9e-24  Score=172.16  Aligned_cols=176  Identities=15%  Similarity=0.140  Sum_probs=110.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCCch--------hhccchhhhh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE--------RFRSLIPSYI   79 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~   79 (208)
                      ..+|+|+|.+|||||||+|+|++..+.. ...++.+.+.......+.+  ..+.+|||||++        .+...+..++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~   80 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM   80 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            4799999999999999999999876642 2334445455444444444  469999999985        5666778889


Q ss_pred             ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCC
Q 028466           80 RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFN  158 (208)
Q Consensus        80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~  158 (208)
                      +.+|++|+|+|+.++.+...  .++..+..  ..+.|+++|+||+|+.+....    ...+. .++. .++++||++|.|
T Consensus        81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~g  151 (436)
T 2hjg_A           81 DEADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLG  151 (436)
T ss_dssp             HHCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBT
T ss_pred             HhCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCC
Confidence            99999999999987544432  33333332  246899999999998643211    11122 3454 789999999999


Q ss_pred             HHHHHHHHHHHcCCCccCCcccccccccccccCCCCC
Q 028466          159 IKALFRKIAAALPGMETLSSTKQEDLVDVNLKSSNTN  195 (208)
Q Consensus       159 v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (208)
                      +.+++++|.+.+.+.+..........+.+-+.+..+|
T Consensus       152 v~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGK  188 (436)
T 2hjg_A          152 LGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGK  188 (436)
T ss_dssp             HHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSH
T ss_pred             hHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCH
Confidence            9999999999987543221122223444555555444

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.89  E-value=3e-22  Score=161.03  Aligned_cols=165  Identities=19%  Similarity=0.177  Sum_probs=113.8

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcC---CCCCCccceeeeeeeEEEEEE---------------C--C----eEEEEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYD---KFDNTYQATIGIDFLSKTMYL---------------E--D----RTVRLQL   62 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~---------------~--~----~~~~~~i   62 (208)
                      ...++|+++|+.++|||||+++|++.   .+..+..+.++++.......+               .  +    ....+.|
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   87 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   87 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence            45689999999999999999999854   334444454444333222222               0  1    1368999


Q ss_pred             EecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC--cCHHHHHHH
Q 028466           63 WDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ--VSIEEGEAK  140 (208)
Q Consensus        63 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~  140 (208)
                      |||||++.|.......+..+|++|+|+|+++.....+..+.+..+....  ..|+++|+||+|+.+...  ...++++.+
T Consensus        88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~  165 (410)
T 1kk1_A           88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKEF  165 (410)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEECccCCCHHHHHHHHHHHHHH
Confidence            9999999999888888899999999999985321122222222232222  257899999999975432  223445555


Q ss_pred             HHH---cCCeEEEeecCCCCCHHHHHHHHHHHcCCC
Q 028466          141 ARE---LNVMFIETSAKAGFNIKALFRKIAAALPGM  173 (208)
Q Consensus       141 ~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~~~~~  173 (208)
                      +..   .+++++++||+++.|+++++++|.+.++..
T Consensus       166 l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p  201 (410)
T 1kk1_A          166 IEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP  201 (410)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             HHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence            544   357899999999999999999999987643

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.89  E-value=4e-22  Score=165.93  Aligned_cols=161  Identities=19%  Similarity=0.223  Sum_probs=112.4

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCC--CC-------------CCccceeeeeeeEEEEEE---CCeEEEEEEEecCCch
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDK--FD-------------NTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQE   69 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~--~~-------------~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~   69 (208)
                      +..+|+|+|+.++|||||+++|+...  ..             .+..+..++......+.+   ++..+.++||||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            35789999999999999999998521  11             111222333333333333   4556899999999999


Q ss_pred             hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC---
Q 028466           70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV---  146 (208)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~---  146 (208)
                      +|...+..+++.+|++|+|+|+++..+......|+....    .+.|+++|+||+|+....  ......++...++.   
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~  156 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT  156 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence            999999999999999999999998666666666655443    368999999999996543  12234455555565   


Q ss_pred             eEEEeecCCCCCHHHHHHHHHHHcCCCc
Q 028466          147 MFIETSAKAGFNIKALFRKIAAALPGME  174 (208)
Q Consensus       147 ~~~~~S~~~~~~v~~~~~~l~~~~~~~~  174 (208)
                      .++++||+++.|+++++++|.+.++...
T Consensus       157 ~vi~vSAktg~GI~~Ll~~I~~~lp~p~  184 (599)
T 3cb4_D          157 DAVRCSAKTGVGVQDVLERLVRDIPPPE  184 (599)
T ss_dssp             TCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred             eEEEeecccCCCchhHHHHHhhcCCCcc
Confidence            4899999999999999999999987644

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.89  E-value=4.9e-22  Score=165.16  Aligned_cols=162  Identities=19%  Similarity=0.273  Sum_probs=115.4

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcC--CCC-------------CCccceeeeeeeEEEEEE---CCeEEEEEEEecCCc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFD-------------NTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQ   68 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~--~~~-------------~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~   68 (208)
                      .+..+|+|+|+.++|||||+++|+..  ...             .+..+.+++......+.+   ++..+.++||||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            34679999999999999999999752  111             111222333222233333   455688999999999


Q ss_pred             hhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC--
Q 028466           69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV--  146 (208)
Q Consensus        69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~--  146 (208)
                      .+|...+..++..+|++|+|+|++++.+......|.....    .+.|+++|+||+|+....  ......++...+++  
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~  157 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP  157 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence            9999999999999999999999998766666666655443    368999999999996543  12233444455565  


Q ss_pred             -eEEEeecCCCCCHHHHHHHHHHHcCCCc
Q 028466          147 -MFIETSAKAGFNIKALFRKIAAALPGME  174 (208)
Q Consensus       147 -~~~~~S~~~~~~v~~~~~~l~~~~~~~~  174 (208)
                       .++++||++|.|+++++++|.+.++...
T Consensus       158 ~~vi~vSAktg~GI~~Lle~I~~~lp~p~  186 (600)
T 2ywe_A          158 EEAILASAKEGIGIEEILEAIVNRIPPPK  186 (600)
T ss_dssp             GGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             ccEEEEEeecCCCchHHHHHHHHhccccc
Confidence             4899999999999999999999987543

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.88  E-value=5.9e-23  Score=156.84  Aligned_cols=166  Identities=15%  Similarity=0.249  Sum_probs=97.0

Q ss_pred             CCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCC-CCc-------cceeeeeeeEEEEEECCeEEEEEEEecCCchh----
Q 028466            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTY-------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----   70 (208)
Q Consensus         3 ~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----   70 (208)
                      |+.....++|+|+|.+|+|||||+|+|++.... ..+       .++.+.+.....+..++..+.+.+|||||...    
T Consensus         2 p~~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~   81 (274)
T 3t5d_A            2 PLGSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN   81 (274)
T ss_dssp             -----CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCC
T ss_pred             CCcCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccc
Confidence            555567899999999999999999998766553 233       45555566555555566557899999999732    


Q ss_pred             ---hccch-------hhhhcc-------------CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466           71 ---FRSLI-------PSYIRD-------------SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV  127 (208)
Q Consensus        71 ---~~~~~-------~~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~  127 (208)
                         +..+.       ..++..             +|+++++++.+.......-..++..+..    ++|+++|+||+|+.
T Consensus        82 ~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~  157 (274)
T 3t5d_A           82 SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTL  157 (274)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGS
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCC
Confidence               22222       333333             7899999977652111112233333332    69999999999986


Q ss_pred             CccCcC--HHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466          128 DKRQVS--IEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       128 ~~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~~~  172 (208)
                      ...+..  ...+.+.+...++.++++|+.+++|+++++++|.+.++-
T Consensus       158 ~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~  204 (274)
T 3t5d_A          158 TPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL  204 (274)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSE
T ss_pred             CHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCc
Confidence            433221  234556666778999999999999999999999988743

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.88  E-value=2.3e-22  Score=152.40  Aligned_cols=163  Identities=12%  Similarity=0.108  Sum_probs=108.1

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCC-CCCCccce-eeeeeeEEEEEECCeEEEEEEEecCCchhhccch---------
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDK-FDNTYQAT-IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI---------   75 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~---------   75 (208)
                      .+.++|+|+|.+|+|||||+++|++.. +.....++ .+.+.......+++  ..+.||||||+..+....         
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~   97 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR   97 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence            467999999999999999999999877 44344443 45555555566666  569999999987654322         


Q ss_pred             --hhhhccCCEEEEEEeCCChhhHH-hHHHHHHHHHhhcCCCCeEEEEEe-CCCCcCccCcCH-------HHHHHHHHHc
Q 028466           76 --PSYIRDSSVAVIVYDVASRQSFL-NTTKWVEEVRTERGSDVIIVLVGN-KTDLVDKRQVSI-------EEGEAKAREL  144 (208)
Q Consensus        76 --~~~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~iivv~n-K~D~~~~~~~~~-------~~~~~~~~~~  144 (208)
                        ..+++.+|++|+|+|+++..... .+..++..+.... ...|+++|+| |+|+.+. ....       .++...+...
T Consensus        98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~  175 (260)
T 2xtp_A           98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC  175 (260)
T ss_dssp             HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred             HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence              23678899999999998622221 2233333332111 1345555555 9999643 2111       2244456665


Q ss_pred             CCe---E--EEeecCCCCCHHHHHHHHHHHcCCC
Q 028466          145 NVM---F--IETSAKAGFNIKALFRKIAAALPGM  173 (208)
Q Consensus       145 ~~~---~--~~~S~~~~~~v~~~~~~l~~~~~~~  173 (208)
                      +..   +  +++||+++.|++++|++|.+.+...
T Consensus       176 ~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          176 GGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence            543   2  7899999999999999999987653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.88  E-value=5e-22  Score=153.47  Aligned_cols=162  Identities=17%  Similarity=0.189  Sum_probs=112.6

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCCch---------hhccch
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLI   75 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~   75 (208)
                      ..+..+|+|+|++|+|||||+|+|++..+.. ...+..+.+.....+..++  ..+.+|||||+.         .+....
T Consensus         5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~   82 (301)
T 1ega_A            5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAA   82 (301)
T ss_dssp             CCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHH
Confidence            3566789999999999999999999887632 2223223222233344444  579999999987         234445


Q ss_pred             hhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecC
Q 028466           76 PSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAK  154 (208)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~  154 (208)
                      ..+++.+|++++|+|+++   +.....++.....  ..+.|+++++||+|+..........+..+...++. .++++|++
T Consensus        83 ~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~  157 (301)
T 1ega_A           83 SSSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE  157 (301)
T ss_dssp             TSCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred             HHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECC
Confidence            667889999999999975   3333334333222  24689999999999865222223344445455565 79999999


Q ss_pred             CCCCHHHHHHHHHHHcCCCc
Q 028466          155 AGFNIKALFRKIAAALPGME  174 (208)
Q Consensus       155 ~~~~v~~~~~~l~~~~~~~~  174 (208)
                      ++.|++++++.|.+.+++.+
T Consensus       158 ~g~~v~~l~~~i~~~l~~~~  177 (301)
T 1ega_A          158 TGLNVDTIAAIVRKHLPEAT  177 (301)
T ss_dssp             TTTTHHHHHHHHHTTCCBCC
T ss_pred             CCCCHHHHHHHHHHhCCcCC
Confidence            99999999999999886543

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.88  E-value=5.7e-22  Score=148.47  Aligned_cols=162  Identities=14%  Similarity=0.125  Sum_probs=109.5

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccc--eeeeeeeEEEEEECCeEEEEEEEecCCch-----------hhcc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA--TIGIDFLSKTMYLEDRTVRLQLWDTAGQE-----------RFRS   73 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~~   73 (208)
                      ...++|+|+|.+|+|||||+|+|++..+.....+  +.+.+.....+.+++  ..+.||||||..           .+..
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~  104 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR  104 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence            4679999999999999999999999888655544  455555556666666  468999999943           3444


Q ss_pred             chhhhhccCCEEEEEEeCCChhh--HHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC------HHHHHHHHHHcC
Q 028466           74 LIPSYIRDSSVAVIVYDVASRQS--FLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS------IEEGEAKARELN  145 (208)
Q Consensus        74 ~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~------~~~~~~~~~~~~  145 (208)
                      ....+++.+|++|+|+|+++...  ...+..+...+...  ...|+++|+||+|+.+.....      ...++.++...+
T Consensus       105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~  182 (239)
T 3lxx_A          105 CILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG  182 (239)
T ss_dssp             HHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred             HHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence            45555678899999999975433  22222222222211  236899999999986544332      245777888888


Q ss_pred             CeEEEeecCCC-----CCHHHHHHHHHHHcCC
Q 028466          146 VMFIETSAKAG-----FNIKALFRKIAAALPG  172 (208)
Q Consensus       146 ~~~~~~S~~~~-----~~v~~~~~~l~~~~~~  172 (208)
                      ..++.++...+     .++.+++..+.+++.+
T Consensus       183 ~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          183 DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            88888877654     6899999998888743

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.88  E-value=2e-24  Score=177.37  Aligned_cols=162  Identities=18%  Similarity=0.185  Sum_probs=117.7

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      +.++|+++|++++|||||+++|.+..+.....++.+.++....+...+. ..+.||||||++.|..++..++..+|++|+
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g-~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG-EKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS-SCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC-CEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            4689999999999999999999987776556666666665555544222 368999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC-HHHHHHH---HHHc--CCeEEEeecCCCCCHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS-IEEGEAK---AREL--NVMFIETSAKAGFNIKA  161 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~S~~~~~~v~~  161 (208)
                      |+|+++........ +   +......+.|+++++||+|+.+..... ..+....   +..+  .++++++||++|.|+++
T Consensus        82 VVDa~dg~~~qt~e-~---l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e  157 (537)
T 3izy_P           82 VVAADDGVMKQTVE-S---IQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA  157 (537)
T ss_dssp             ECBSSSCCCHHHHH-H---HHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred             EEECCCCccHHHHH-H---HHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence            99999753333222 2   222223468999999999986432211 1111111   1111  24799999999999999


Q ss_pred             HHHHHHHHcCCCc
Q 028466          162 LFRKIAAALPGME  174 (208)
Q Consensus       162 ~~~~l~~~~~~~~  174 (208)
                      ++++|...+....
T Consensus       158 Lle~I~~l~~~~~  170 (537)
T 3izy_P          158 LAEATIALAEMLE  170 (537)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHhhhccc
Confidence            9999998875443

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.88  E-value=1.4e-21  Score=154.21  Aligned_cols=160  Identities=19%  Similarity=0.123  Sum_probs=109.4

Q ss_pred             cee-EEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCch---------hhccchhhh
Q 028466            9 KYK-LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLIPSY   78 (208)
Q Consensus         9 ~~~-i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~   78 (208)
                      .++ |+|+|.+|+|||||+|+|.+..+.....+..+.+.....+.+++  ..+.+|||+|.-         .|.... ..
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~  254 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE  254 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence            355 99999999999999999998876544455666667777777877  468999999962         233332 35


Q ss_pred             hccCCEEEEEEeCCChh--hHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc-CHHHHHHHHHHc---CCeEEEee
Q 028466           79 IRDSSVAVIVYDVASRQ--SFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV-SIEEGEAKAREL---NVMFIETS  152 (208)
Q Consensus        79 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~S  152 (208)
                      +..+|++++|+|++++.  ....+..|...+......+.|+++|.||+|+.+.... ....+..++..+   +..++++|
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S  334 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS  334 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            78999999999999876  4555555555555443357899999999998653210 012233334554   24789999


Q ss_pred             cCCCCCHHHHHHHHHHHcC
Q 028466          153 AKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       153 ~~~~~~v~~~~~~l~~~~~  171 (208)
                      ++++.|+++++++|.+.+.
T Consensus       335 A~~g~gi~~L~~~I~~~l~  353 (364)
T 2qtf_A          335 ALKRTNLELLRDKIYQLAT  353 (364)
T ss_dssp             TTTTBSHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHhc
Confidence            9999999999999998764

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.88  E-value=4e-22  Score=163.32  Aligned_cols=150  Identities=18%  Similarity=0.269  Sum_probs=100.4

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCC-------------------------------CCCCccceeeeeeeEEEEEECCe
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDK-------------------------------FDNTYQATIGIDFLSKTMYLEDR   56 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~   56 (208)
                      ..+||+++|.+++|||||+++|++..                               ...+..+..+++.....+...  
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--  109 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH--  109 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS--
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC--
Confidence            46999999999999999999997541                               111222344444444444444  


Q ss_pred             EEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHH------hHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFL------NTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR  130 (208)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~  130 (208)
                      .+.+.||||||++.|...+..++..+|++|+|+|++++....      +..+.+. +.... ...|++||+||+|+.+..
T Consensus       110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~-~~~~~-~~~~iIvviNK~Dl~~~~  187 (483)
T 3p26_A          110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHML-LASSL-GIHNLIIAMNKMDNVDWS  187 (483)
T ss_dssp             SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHH-HHHHT-TCCCEEEEEECGGGGTTC
T ss_pred             CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHH-HHHHc-CCCcEEEEEECcCcccch
Confidence            367999999999999999999999999999999999864321      2222222 22222 125699999999997644


Q ss_pred             CcCHHHHHHHHH----Hc-----CCeEEEeecCCCCCHHH
Q 028466          131 QVSIEEGEAKAR----EL-----NVMFIETSAKAGFNIKA  161 (208)
Q Consensus       131 ~~~~~~~~~~~~----~~-----~~~~~~~S~~~~~~v~~  161 (208)
                      +...+++...+.    .+     +++++++||++|.|+++
T Consensus       188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            333333333333    32     45799999999999874

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.88  E-value=7.6e-23  Score=165.92  Aligned_cols=155  Identities=20%  Similarity=0.238  Sum_probs=106.5

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccch--------hhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------PSY   78 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~   78 (208)
                      ..++|+|+|.+|+|||||+|+|++..+. ....++.+.+.....+.+++  ..+.+|||||+..+...+        ..+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            3589999999999999999999987543 33445666666666677777  568999999986654433        235


Q ss_pred             hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466           79 IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN  158 (208)
Q Consensus        79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (208)
                      +..+|++++|+|++++.+... ..++..+.     ..|+++|+||+|+.+.....  ..+.+.  .+.+++++|++++.|
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G  370 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG  370 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence            788999999999997655443 34444442     37999999999997654332  111111  346899999999999


Q ss_pred             HHHHHHHHHHHcCCCc
Q 028466          159 IKALFRKIAAALPGME  174 (208)
Q Consensus       159 v~~~~~~l~~~~~~~~  174 (208)
                      +++++++|.+.+....
T Consensus       371 i~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          371 IDSLETAILEIVQTGK  386 (462)
T ss_dssp             HHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHhccC
Confidence            9999999999986543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.88  E-value=4.3e-23  Score=167.98  Aligned_cols=178  Identities=15%  Similarity=0.143  Sum_probs=110.6

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCC--------chhhccchhh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAG--------QERFRSLIPS   77 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~   77 (208)
                      |+..+|+|+|.+|||||||+|+|++..+.. ...+..+.+.....  .......+.+|||||        ++.+......
T Consensus        21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~--~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~   98 (456)
T 4dcu_A           21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSS--AEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI   98 (456)
T ss_dssp             --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEE--CTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEE--EEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence            667899999999999999999999876642 22333343333333  333335799999999        6777888888


Q ss_pred             hhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC-CeEEEeecCCC
Q 028466           78 YIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN-VMFIETSAKAG  156 (208)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~  156 (208)
                      +++.+|++|+|+|+.+.  +.....++..+...  .++|+++|+||+|+.+...    ....+. ..+ ...+++||.++
T Consensus        99 ~~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~~g  169 (456)
T 4dcu_A           99 AMDEADVIIFMVNGREG--VTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHG  169 (456)
T ss_dssp             HHHHCSEEEEEEESSSC--SCHHHHHHHHHHTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTC
T ss_pred             hHhhCCEEEEEEeCCCC--CChHHHHHHHHHHH--cCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeecccc
Confidence            99999999999998753  33333444444332  4689999999999854321    111111 223 25689999999


Q ss_pred             CCHHHHHHHHHHHcCCCccCCcccccccccccccCCCCC
Q 028466          157 FNIKALFRKIAAALPGMETLSSTKQEDLVDVNLKSSNTN  195 (208)
Q Consensus       157 ~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (208)
                      .|+.++++.+.+.+..............+.+-+.+..++
T Consensus       170 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGK  208 (456)
T 4dcu_A          170 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGK  208 (456)
T ss_dssp             TTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSH
T ss_pred             cchHHHHHHHHhhcccccccccccccceeEEecCCCCCH
Confidence            999999999998876543222222233344444444433

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.87  E-value=2.3e-21  Score=152.24  Aligned_cols=121  Identities=17%  Similarity=0.260  Sum_probs=100.2

Q ss_pred             EEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCC----------hhhHHhHHHHHHHHHhhc-CCCCeE
Q 028466           49 KTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAS----------RQSFLNTTKWVEEVRTER-GSDVII  117 (208)
Q Consensus        49 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~i  117 (208)
                      ..+.+++  +.+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...|+..+.... ..+.|+
T Consensus       186 ~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pi  263 (353)
T 1cip_A          186 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI  263 (353)
T ss_dssp             EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred             EEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcE
Confidence            3444544  689999999999999999999999999999999998          457888888888887643 257999


Q ss_pred             EEEEeCCCCcCcc---------------CcCHHHHHHHHH-----------HcCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          118 VLVGNKTDLVDKR---------------QVSIEEGEAKAR-----------ELNVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       118 ivv~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      +|++||+|+.++.               .....++..++.           ..++.++++||+++.||+++|+++.+.+.
T Consensus       264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~  343 (353)
T 1cip_A          264 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII  343 (353)
T ss_dssp             EEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence            9999999985332               356778888776           34678999999999999999999998874

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.87  E-value=1.1e-22  Score=164.59  Aligned_cols=155  Identities=16%  Similarity=0.243  Sum_probs=103.2

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcC--CCCC-----------------------------CccceeeeeeeEEEEEEC
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYD--KFDN-----------------------------TYQATIGIDFLSKTMYLE   54 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~   54 (208)
                      ..+.++|+++|+.++|||||+++|++.  .+..                             +..+..+++.....+...
T Consensus         3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~   82 (435)
T 1jny_A            3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK   82 (435)
T ss_dssp             -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred             CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence            356799999999999999999999864  2221                             112334444444444444


Q ss_pred             CeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhh----cCCC-CeEEEEEeCCCCcCc
Q 028466           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE----RGSD-VIIVLVGNKTDLVDK  129 (208)
Q Consensus        55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~-~~iivv~nK~D~~~~  129 (208)
                      +  +.+.||||||+++|...+..++..+|++|+|+|+++ .+|+....|..+...+    ...+ .++++++||+|+.+.
T Consensus        83 ~--~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~  159 (435)
T 1jny_A           83 K--YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP  159 (435)
T ss_dssp             S--CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred             C--eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence            3  579999999999999999999999999999999998 5666332222111111    1123 458899999999652


Q ss_pred             c------CcCHHHHHHHHHHcC-----CeEEEeecCCCCCHHHHH
Q 028466          130 R------QVSIEEGEAKARELN-----VMFIETSAKAGFNIKALF  163 (208)
Q Consensus       130 ~------~~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~~~  163 (208)
                      .      +....+++.++..++     ++++++||++|+|+.+++
T Consensus       160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~  204 (435)
T 1jny_A          160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS  204 (435)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence            1      112345666666665     679999999999997544

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.86  E-value=2.8e-21  Score=156.36  Aligned_cols=151  Identities=20%  Similarity=0.200  Sum_probs=104.0

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCC---CCC------------------------------ccceeeeeeeEEEEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF---DNT------------------------------YQATIGIDFLSKTMYL   53 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~---~~~------------------------------~~~~~~~~~~~~~~~~   53 (208)
                      ...++|+++|+.++|||||+++|++...   ...                              ..+.++++.....+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            3458999999999999999999985531   000                              0112333333333333


Q ss_pred             CCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc-
Q 028466           54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV-  132 (208)
Q Consensus        54 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-  132 (208)
                      .+  ..+.||||||++.|...+..++..+|++|+|+|++++. ..+..+++..+... + -.|+++|+||+|+.+..+. 
T Consensus       102 ~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~-~~qt~~~l~~~~~~-~-~~~iIvviNK~Dl~~~~~~~  176 (434)
T 1zun_B          102 AK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV-QTQTRRHSYIASLL-G-IKHIVVAINKMDLNGFDERV  176 (434)
T ss_dssp             SS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS-CHHHHHHHHHHHHT-T-CCEEEEEEECTTTTTSCHHH
T ss_pred             CC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHHc-C-CCeEEEEEEcCcCCcccHHH
Confidence            33  57999999999999999989999999999999998753 22333444433322 1 2468999999999753211 


Q ss_pred             ---CHHHHHHHHHHcC-----CeEEEeecCCCCCHHHH
Q 028466          133 ---SIEEGEAKARELN-----VMFIETSAKAGFNIKAL  162 (208)
Q Consensus       133 ---~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~~  162 (208)
                         ...++..++..++     ++++++||++|.|++++
T Consensus       177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence               2345566666666     68999999999999873

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.86  E-value=3e-21  Score=149.58  Aligned_cols=123  Identities=15%  Similarity=0.161  Sum_probs=99.1

Q ss_pred             EEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCC----------ChhhHHhHHHHHHHHHhhcC-CCCe
Q 028466           48 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA----------SRQSFLNTTKWVEEVRTERG-SDVI  116 (208)
Q Consensus        48 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~~  116 (208)
                      ...+..++  +.+.+||++|++.++..|..++++++++|+|+|++          +..++++...|+..+..... .+.|
T Consensus       159 ~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~  236 (327)
T 3ohm_A          159 EYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS  236 (327)
T ss_dssp             EEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCE
T ss_pred             EEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCce
Confidence            33444554  78999999999999999999999999999999665          56778888788887765432 6799


Q ss_pred             EEEEEeCCCCcCcc----------------CcCHHHHHHHHH----------HcCCeEEEeecCCCCCHHHHHHHHHHHc
Q 028466          117 IVLVGNKTDLVDKR----------------QVSIEEGEAKAR----------ELNVMFIETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       117 iivv~nK~D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~S~~~~~~v~~~~~~l~~~~  170 (208)
                      ++|++||+|+.+++                ....+++.+++.          ..++.++++||+++.||+.+|+.+.+.+
T Consensus       237 iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~I  316 (327)
T 3ohm_A          237 VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI  316 (327)
T ss_dssp             EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHH
Confidence            99999999986533                456777777743          3456789999999999999999999988


Q ss_pred             CC
Q 028466          171 PG  172 (208)
Q Consensus       171 ~~  172 (208)
                      .+
T Consensus       317 l~  318 (327)
T 3ohm_A          317 LQ  318 (327)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.86  E-value=7.9e-22  Score=142.74  Aligned_cols=116  Identities=18%  Similarity=0.325  Sum_probs=89.3

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCC---CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhcc--
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD--   81 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--   81 (208)
                      .+.++|+|+|.+|+|||||+++|.+..+..   ...++.+.++         ..+.+.+|||||++.+...+..++..  
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~  116 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA  116 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence            467899999999999999999999887643   2223332222         23568999999999998888877776  


Q ss_pred             --CCEEEEEEeCC-ChhhHHhHHHHHHHHHhhc----CCCCeEEEEEeCCCCcCccC
Q 028466           82 --SSVAVIVYDVA-SRQSFLNTTKWVEEVRTER----GSDVIIVLVGNKTDLVDKRQ  131 (208)
Q Consensus        82 --~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~----~~~~~iivv~nK~D~~~~~~  131 (208)
                        +|++|+|+|++ +++++..+..|+..+....    ..+.|+++|+||+|+.+...
T Consensus       117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A          117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence              89999999999 8899999888887776542    35799999999999976543

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.86  E-value=1.2e-21  Score=155.00  Aligned_cols=146  Identities=11%  Similarity=0.050  Sum_probs=108.4

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (208)
                      +|+++|..++|||||+++|+        .+..+++.....+...+  +.+.||||||+++|.......++.+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            99999999999999999998        33444444444444444  569999999999998888888999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHhhcCCCCeE-EEEEe-CCCCcCccCcC--HHHHHHHHHHcC---CeEEE--eecCC---CCC
Q 028466           91 VASRQSFLNTTKWVEEVRTERGSDVII-VLVGN-KTDLVDKRQVS--IEEGEAKARELN---VMFIE--TSAKA---GFN  158 (208)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~~~~~~i-ivv~n-K~D~~~~~~~~--~~~~~~~~~~~~---~~~~~--~S~~~---~~~  158 (208)
                       +. ..+.+..+++..+...   +.|. ++++| |+|+ +.....  ..+++.++..++   +++++  +||++   +.|
T Consensus        93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g  166 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG  166 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred             -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence             53 3444555555554432   4666 88888 9999 432211  134455554443   68999  99999   999


Q ss_pred             HHHHHHHHHHHcCC
Q 028466          159 IKALFRKIAAALPG  172 (208)
Q Consensus       159 v~~~~~~l~~~~~~  172 (208)
                      ++++++.|.+.++.
T Consensus       167 i~~L~~~l~~~~~~  180 (370)
T 2elf_A          167 VDELKARINEVAEK  180 (370)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccc
Confidence            99999999988754

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.86  E-value=5.2e-21  Score=153.14  Aligned_cols=159  Identities=16%  Similarity=0.145  Sum_probs=111.5

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcC-------CCC---------CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYD-------KFD---------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (208)
                      +.++|+++|+.++|||||+++|++.       .+.         .+.....+++...  ..+......+.||||||++.|
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~--~~~~~~~~~~~iiDtpG~~~f   79 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAH--VEYSTAARHYAHTDCPGHADY   79 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEE--EEEECSSCEEEEEECSSHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeee--EEeccCCeEEEEEECCChHHH
Confidence            3589999999999999999999863       111         0112233333333  333333367999999999999


Q ss_pred             ccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccC---cCHHHHHHHHHHcC--
Q 028466           72 RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQ---VSIEEGEAKARELN--  145 (208)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~---~~~~~~~~~~~~~~--  145 (208)
                      ...+..++..+|++|+|+|+++....+ ..+++..+..   .+.| +++++||+|+.+..+   ....+++.++..++  
T Consensus        80 ~~~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~  155 (397)
T 1d2e_A           80 VKNMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK  155 (397)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence            988889999999999999998743222 2233333332   2577 788999999964211   11245566776665  


Q ss_pred             ---CeEEEeecCCCCC----------HHHHHHHHHHHcCC
Q 028466          146 ---VMFIETSAKAGFN----------IKALFRKIAAALPG  172 (208)
Q Consensus       146 ---~~~~~~S~~~~~~----------v~~~~~~l~~~~~~  172 (208)
                         ++++++||+++.|          +.++++.|.+.++.
T Consensus       156 ~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~  195 (397)
T 1d2e_A          156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV  195 (397)
T ss_dssp             TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence               5899999999764          89999999988764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.86  E-value=1.7e-20  Score=152.03  Aligned_cols=161  Identities=22%  Similarity=0.257  Sum_probs=108.7

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc------------
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------------   74 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------------   74 (208)
                      ..++|+|+|++|||||||+|+|++.... ....++.+.+.....+.+++.  .+.+|||+|...+...            
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence            4689999999999999999999987652 233455556666667777774  5889999997543221            


Q ss_pred             hhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHH-HH----cCCeEE
Q 028466           75 IPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKA-RE----LNVMFI  149 (208)
Q Consensus        75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~~  149 (208)
                      ...+++.+|++++|+|++++.+....  ++......  .+.|+++|+||+|+.+.......+..... ..    .+++++
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  332 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence            13467889999999999875444331  22222222  36899999999999765444344333222 22    257899


Q ss_pred             EeecCCCCCHHHHHHHHHHHcCCCc
Q 028466          150 ETSAKAGFNIKALFRKIAAALPGME  174 (208)
Q Consensus       150 ~~S~~~~~~v~~~~~~l~~~~~~~~  174 (208)
                      ++||++|.|++++|+.+.+.+....
T Consensus       333 ~~SA~~g~gv~~l~~~i~~~~~~~~  357 (439)
T 1mky_A          333 FTSADKGWNIDRMIDAMNLAYASYT  357 (439)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHHHHHHhhc
Confidence            9999999999999999998775443

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.86  E-value=4.6e-21  Score=159.63  Aligned_cols=158  Identities=21%  Similarity=0.208  Sum_probs=107.1

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC----------------CeEEEEEEEecCCchh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE----------------DRTVRLQLWDTAGQER   70 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~   70 (208)
                      ++.++|+|+|+.++|||||+++|++..+........+.+........+                .....++||||||++.
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            466899999999999999999998765533221122222111111111                0112589999999999


Q ss_pred             hccchhhhhccCCEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC-------------H
Q 028466           71 FRSLIPSYIRDSSVAVIVYDVAS---RQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS-------------I  134 (208)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~-------------~  134 (208)
                      |..++.++++.+|++|+|+|+++   +++++.+..    +..   .+.|+++++||+|+.......             .
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~  155 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI  155 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence            99999999999999999999998   555544332    222   468999999999996432110             0


Q ss_pred             ----------HHHHHHHHHcC---------------CeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          135 ----------EEGEAKARELN---------------VMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       135 ----------~~~~~~~~~~~---------------~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                                .+......+.+               ++++++||++|.|+++++++|...++
T Consensus       156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence                      01112222222               37999999999999999999998764

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.86  E-value=1.9e-21  Score=156.11  Aligned_cols=160  Identities=20%  Similarity=0.206  Sum_probs=114.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcC--------CCCCC---------ccceeeeeeeEEEEEECCeEEEEEEEecCCch
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYD--------KFDNT---------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   69 (208)
                      ...++|+++|+.++|||||+++|++.        .+...         ..+..+++..  ...+......+.||||||++
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~--~~~~~~~~~~~~iiDtpG~~   86 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTA--HVEYETAKRHYSHVDCPGHA   86 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCE--EEEEECSSCEEEEEECCCSG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEee--eeEeccCCeEEEEEECCChH
Confidence            45799999999999999999999863        21110         1223333333  33333333679999999999


Q ss_pred             hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccC---cCHHHHHHHHHHcC
Q 028466           70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQ---VSIEEGEAKARELN  145 (208)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~---~~~~~~~~~~~~~~  145 (208)
                      .|...+..++..+|++|+|+|++++. ..+..+++..+..   .+.| +++++||+|+.+..+   ....+++.++..++
T Consensus        87 ~f~~~~~~~~~~aD~~ilVvda~~g~-~~qt~~~l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~  162 (405)
T 2c78_A           87 DYIKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE  162 (405)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCC-CHHHHHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCC-cHHHHHHHHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999998753 2334455554443   2577 889999999964211   11234556666665


Q ss_pred             -----CeEEEeecCCCCC------------------HHHHHHHHHHHcCC
Q 028466          146 -----VMFIETSAKAGFN------------------IKALFRKIAAALPG  172 (208)
Q Consensus       146 -----~~~~~~S~~~~~~------------------v~~~~~~l~~~~~~  172 (208)
                           ++++++||+++.|                  +.++++.|.+.++.
T Consensus       163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~  212 (405)
T 2c78_A          163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT  212 (405)
T ss_dssp             SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred             ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence                 6899999999987                  88899999887763

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.85  E-value=7.5e-21  Score=156.60  Aligned_cols=115  Identities=18%  Similarity=0.169  Sum_probs=84.1

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcC------------------CCCC----CccceeeeeeeEEEEEECCeEEEEEEEec
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYD------------------KFDN----TYQATIGIDFLSKTMYLEDRTVRLQLWDT   65 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~------------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   65 (208)
                      +..+|+|+|++|+|||||+++|+..                  .+..    +..++.++......+.+.+  +.++||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT   89 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT   89 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence            4689999999999999999999611                  0100    1113334444444555555  67999999


Q ss_pred             CCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466           66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD  128 (208)
Q Consensus        66 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~  128 (208)
                      ||+..|...+..+++.+|++|+|+|++++........| ..+.   ..++|+++|+||+|+..
T Consensus        90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~---~~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCR---LRHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHH---TTTCCEEEEEECTTSCC
T ss_pred             CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH---HcCCCEEEEEeCCCCcc
Confidence            99999999999999999999999999976555444433 2232   24689999999999854

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.85  E-value=1.4e-22  Score=165.12  Aligned_cols=155  Identities=18%  Similarity=0.260  Sum_probs=91.1

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhc--CCCC-----------------------------CCccceeeeeeeEEEEEECC
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMY--DKFD-----------------------------NTYQATIGIDFLSKTMYLED   55 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   55 (208)
                      ...++|+++|+.++|||||+++|+.  +.+.                             .+....++++.....+..++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            3468999999999999999999974  2211                             01123344444444455554


Q ss_pred             eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCCh---hhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCcc-
Q 028466           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASR---QSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKR-  130 (208)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~-  130 (208)
                        ..+.||||||++.|...+..++..+|++|+|+|+++.   .+|+...++...+......++| ++|++||+|+.... 
T Consensus       121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~  198 (467)
T 1r5b_A          121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW  198 (467)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred             --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence              5799999999999999999999999999999999975   2332211222222222223576 89999999995321 


Q ss_pred             -----CcCHHHHHHHHHHc-------CCeEEEeecCCCCCHHHHH
Q 028466          131 -----QVSIEEGEAKAREL-------NVMFIETSAKAGFNIKALF  163 (208)
Q Consensus       131 -----~~~~~~~~~~~~~~-------~~~~~~~S~~~~~~v~~~~  163 (208)
                           +....++..++...       +++++++|+++|.|+.+++
T Consensus       199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                 11123456666655       3569999999999998754

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.85  E-value=2.7e-23  Score=169.33  Aligned_cols=157  Identities=21%  Similarity=0.224  Sum_probs=110.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+..+|+++|+.++|||||+++|....+.....++++.+.....+.+++  ..++||||||++.|..++.+++..+|++|
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            3568999999999999999999987666544445555554444444444  46899999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC--cCHH--HHHHHHHHcC--CeEEEeecCCCCCHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ--VSIE--EGEAKARELN--VMFIETSAKAGFNIK  160 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~--~~~~~~~~~~--~~~~~~S~~~~~~v~  160 (208)
                      +|+|+++.... +..+++..+.   ..+.|+++++||+|+.....  ....  +...+...++  ++++++||++|.|++
T Consensus        80 LVVda~~g~~~-qT~e~l~~~~---~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~  155 (501)
T 1zo1_I           80 LVVAADDGVMP-QTIEAIQHAK---AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID  155 (501)
T ss_dssp             EEEETTTBSCT-TTHHHHHHHH---HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred             EEeecccCccH-HHHHHHHHHH---hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence            99999873211 1112222222   23689999999999964311  1000  0000111222  689999999999999


Q ss_pred             HHHHHHHHH
Q 028466          161 ALFRKIAAA  169 (208)
Q Consensus       161 ~~~~~l~~~  169 (208)
                      +++++|...
T Consensus       156 eLle~I~~~  164 (501)
T 1zo1_I          156 ELLDAILLQ  164 (501)
T ss_dssp             THHHHTTTT
T ss_pred             hhhhhhhhh
Confidence            999998764

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.5e-21  Score=163.36  Aligned_cols=152  Identities=18%  Similarity=0.247  Sum_probs=104.0

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCC-------------------------------ccceeeeeeeEEEEEECC
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-------------------------------YQATIGIDFLSKTMYLED   55 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~   55 (208)
                      ...++|+++|.+++|||||+++|++....-.                               ..++++++.....+...+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            3478999999999999999999986532111                               113445555555555544


Q ss_pred             eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChh---hH---HhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc
Q 028466           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ---SF---LNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK  129 (208)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~  129 (208)
                        +.+.||||||++.|...+..+++.+|++|+|+|++++.   ++   .+....+..+. .. ...++|||+||+|+.+.
T Consensus       245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~-~l-gi~~iIVVvNKiDl~~~  320 (611)
T 3izq_1          245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS-SL-GIHNLIIAMNKMDNVDW  320 (611)
T ss_dssp             --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHH-TT-TCCEEEEEEECTTTTTT
T ss_pred             --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHH-Hc-CCCeEEEEEecccccch
Confidence              57999999999999999999999999999999998642   11   11222222222 11 12459999999999763


Q ss_pred             cCcCHH----HHHHHHHHc-----CCeEEEeecCCCCCHHHH
Q 028466          130 RQVSIE----EGEAKAREL-----NVMFIETSAKAGFNIKAL  162 (208)
Q Consensus       130 ~~~~~~----~~~~~~~~~-----~~~~~~~S~~~~~~v~~~  162 (208)
                      .+....    ++..++...     +++++++||++|.|+.++
T Consensus       321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            332222    333344433     358999999999999865

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.84  E-value=6.9e-22  Score=156.17  Aligned_cols=157  Identities=17%  Similarity=0.276  Sum_probs=85.6

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCc--------cceeeeeeeEEEEEECCeEEEEEEEecCCc-------hhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTY--------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-------ERF   71 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~~   71 (208)
                      ..++|+|+|++|+|||||+++|++.... ..+        .++.+++.....+..++..+.+.+|||||+       +.+
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            4689999999999999999998765432 222        134444444444455566678999999998       556


Q ss_pred             ccchh-------hhhccCC-------------EEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466           72 RSLIP-------SYIRDSS-------------VAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKR  130 (208)
Q Consensus        72 ~~~~~-------~~~~~~d-------------~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~  130 (208)
                      ..++.       .+++.++             +++++++.+ ..++..+. .++..+    ..++|+|+|+||+|+....
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~  190 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLK  190 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHH
Confidence            66655       5555433             344444432 23444443 233322    3568999999999997654


Q ss_pred             CcCH--HHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHHc
Q 028466          131 QVSI--EEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       131 ~~~~--~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~  170 (208)
                      ++..  .++..++..++++++++|++++.+ ++.|.++.+.+
T Consensus       191 ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i  231 (361)
T 2qag_A          191 ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLL  231 (361)
T ss_dssp             HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHH
Confidence            4433  466677777789999999999988 66665555544

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.84  E-value=8.5e-22  Score=160.20  Aligned_cols=151  Identities=17%  Similarity=0.217  Sum_probs=104.3

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcC--CCCC-----------------------------CccceeeeeeeEEEEEECC
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDN-----------------------------TYQATIGIDFLSKTMYLED   55 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   55 (208)
                      ...++|+++|..++|||||+++|++.  .+..                             +..+.++++.....+...+
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            45799999999999999999999864  2211                             0113344444444444444


Q ss_pred             eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChh---hHH---hHHHHHHHHHhhcCCCCe-EEEEEeCCCCcC
Q 028466           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ---SFL---NTTKWVEEVRTERGSDVI-IVLVGNKTDLVD  128 (208)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~  128 (208)
                        +.+.||||||++.|...+..++..+|++|+|+|+++..   +|+   +..+++..+..   .+.| +++|+||+|+.+
T Consensus        85 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~  159 (458)
T 1f60_A           85 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK  159 (458)
T ss_dssp             --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred             --ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence              67999999999999999999999999999999998642   221   22233322222   2454 899999999973


Q ss_pred             ccC----cCHHHHHHHHHHcC-----CeEEEeecCCCCCHHHH
Q 028466          129 KRQ----VSIEEGEAKARELN-----VMFIETSAKAGFNIKAL  162 (208)
Q Consensus       129 ~~~----~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~~  162 (208)
                      ..+    ....++..++..++     ++++++||++|.|+.++
T Consensus       160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            221    12234555555554     68999999999998743

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.83  E-value=2.9e-20  Score=144.59  Aligned_cols=116  Identities=22%  Similarity=0.279  Sum_probs=94.2

Q ss_pred             EEEEEEEecCCchhhccchhhhhccCCEEEEEEeCC----------ChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCC
Q 028466           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA----------SRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTD  125 (208)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D  125 (208)
                      .+.+.+||++|++.++..|..++++++++|+|+|++          +..++.+...|+..+..... .++|++|++||+|
T Consensus       160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D  239 (340)
T 4fid_A          160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD  239 (340)
T ss_dssp             SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred             eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence            368999999999999999999999999999999998          67888888888888776543 6799999999999


Q ss_pred             CcCcc---------------CcCHHHHHHHHHHc---------------------------CCeEEEeecCCCCCHHHHH
Q 028466          126 LVDKR---------------QVSIEEGEAKAREL---------------------------NVMFIETSAKAGFNIKALF  163 (208)
Q Consensus       126 ~~~~~---------------~~~~~~~~~~~~~~---------------------------~~~~~~~S~~~~~~v~~~~  163 (208)
                      +.+++               ....+++..++...                           .+.++++||+++.+|+.+|
T Consensus       240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF  319 (340)
T 4fid_A          240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF  319 (340)
T ss_dssp             HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred             hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence            85321               12345554444322                           3678999999999999999


Q ss_pred             HHHHHHcCC
Q 028466          164 RKIAAALPG  172 (208)
Q Consensus       164 ~~l~~~~~~  172 (208)
                      +.+.+.+.+
T Consensus       320 ~~v~~~Il~  328 (340)
T 4fid_A          320 MLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998854

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.83  E-value=3.8e-22  Score=166.48  Aligned_cols=160  Identities=21%  Similarity=0.284  Sum_probs=89.8

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcC-------------------------------CCCCCccceeeeeeeEEEEEECC
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYD-------------------------------KFDNTYQATIGIDFLSKTMYLED   55 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~   55 (208)
                      ...++|+++|++++|||||+++|++.                               .+..+..++++++.....+... 
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~-  253 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD-  253 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC-
Confidence            34689999999999999999999632                               1111223445555544444443 


Q ss_pred             eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChh---hH--H-hHHHHHHHHHhhcCCCCe-EEEEEeCCCCcC
Q 028466           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ---SF--L-NTTKWVEEVRTERGSDVI-IVLVGNKTDLVD  128 (208)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~-~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~  128 (208)
                       ...+.||||||++.|...+..++..+|++|+|+|++++.   ++  . +....+..+..   .++| +|||+||+|+.+
T Consensus       254 -~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~~  329 (592)
T 3mca_A          254 -KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLMS  329 (592)
T ss_dssp             ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGGT
T ss_pred             -CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEecccccc
Confidence             367999999999999999999999999999999998532   22  1 22222222222   2455 899999999975


Q ss_pred             ccCcCH----HHHHHHH-HHcCC-----eEEEeecCCCCCHH--------------HHHHHHHHHcC
Q 028466          129 KRQVSI----EEGEAKA-RELNV-----MFIETSAKAGFNIK--------------ALFRKIAAALP  171 (208)
Q Consensus       129 ~~~~~~----~~~~~~~-~~~~~-----~~~~~S~~~~~~v~--------------~~~~~l~~~~~  171 (208)
                      ..+...    .++..++ ...++     +++++||++|.|+.              .+++.|...++
T Consensus       330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p  396 (592)
T 3mca_A          330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP  396 (592)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred             ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence            322222    2333343 33343     69999999999998              78888877654

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.83  E-value=2.4e-20  Score=146.37  Aligned_cols=116  Identities=17%  Similarity=0.201  Sum_probs=92.2

Q ss_pred             eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCC----------ChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCC
Q 028466           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA----------SRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKT  124 (208)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~  124 (208)
                      ..+.+.+|||+|++.++..+..++++++++|+|||++          +..+++....|+..+.... ..+.|++||+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5678999999999999999999999999999999998          7789999989988887643 3679999999999


Q ss_pred             CCcCccC--c-------------------CHHHHHHHHHH----------------cCCeEEEeecCCCCCHHHHHHHHH
Q 028466          125 DLVDKRQ--V-------------------SIEEGEAKARE----------------LNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus       125 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      |+.+++.  .                   ..+++..++..                ..+.++++||+++.||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9854321  1                   13455555432                123568999999999999999999


Q ss_pred             HHcC
Q 028466          168 AALP  171 (208)
Q Consensus       168 ~~~~  171 (208)
                      +.+.
T Consensus       341 ~~I~  344 (354)
T 2xtz_A          341 ETLR  344 (354)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8874

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.83  E-value=2.1e-20  Score=162.93  Aligned_cols=162  Identities=16%  Similarity=0.140  Sum_probs=111.3

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCC-------CCC-------CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDK-------FDN-------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   72 (208)
                      ...++|+++|+.++|||||+++|++..       +..       ..+...++++....+.++.....+.||||||++.|.
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~  373 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV  373 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence            457999999999999999999998631       100       111223333322233343344679999999999999


Q ss_pred             cchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccC---cCHHHHHHHHHHcC---
Q 028466           73 SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQ---VSIEEGEAKARELN---  145 (208)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~---~~~~~~~~~~~~~~---  145 (208)
                      .....++..+|++|+|+|+++.. +.+..+++..+...   ++| +|+++||+|+.+..+   ....+++.++..++   
T Consensus       374 ~~mi~gas~AD~aILVVDAtdGv-~~QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~  449 (1289)
T 3avx_A          374 KNMITGAAQMDGAILVVAATDGP-MPQTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG  449 (1289)
T ss_dssp             HHHHHTSCCCSEEEEEEETTTCS-CTTHHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHhhCCEEEEEEcCCccC-cHHHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccc
Confidence            99889999999999999998752 22344444444332   477 789999999964221   11245566666665   


Q ss_pred             --CeEEEeecCCC--------CCHHHHHHHHHHHcCC
Q 028466          146 --VMFIETSAKAG--------FNIKALFRKIAAALPG  172 (208)
Q Consensus       146 --~~~~~~S~~~~--------~~v~~~~~~l~~~~~~  172 (208)
                        ++++++||++|        .|+.++++.|.+.++.
T Consensus       450 ~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~  486 (1289)
T 3avx_A          450 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE  486 (1289)
T ss_dssp             TTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred             cceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence              58999999999        4689999999987753

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.82  E-value=7.2e-20  Score=134.14  Aligned_cols=157  Identities=17%  Similarity=0.223  Sum_probs=100.7

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh----------hccchh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSLIP   76 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~   76 (208)
                      .+..+|+|+|++|+|||||+++|.+..+.....++.+.......+.+++   .+.+|||||+..          +.....
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            4578999999999999999999998774333344444433333333333   478999999742          333333


Q ss_pred             hhh---ccCCEEEEEEeCCChhhHHh--HHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC--cCHHHHHHHHHHcC--Ce
Q 028466           77 SYI---RDSSVAVIVYDVASRQSFLN--TTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ--VSIEEGEAKARELN--VM  147 (208)
Q Consensus        77 ~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~  147 (208)
                      .++   ..++++++++|++++.+...  +..|+    ..  .+.|+++|.||+|+.+..+  .....+..++.+.+  +.
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~----~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~  174 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA----VD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ  174 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH----HH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             HHHHhhhcccEEEEEEECCCCCchhHHHHHHHH----HH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence            444   46899999999987544322  22222    12  3588899999999865322  11345555555554  57


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHcCC
Q 028466          148 FIETSAKAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       148 ~~~~S~~~~~~v~~~~~~l~~~~~~  172 (208)
                      ++++|++++.|+++++++|.+.+.+
T Consensus       175 ~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          175 VETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             eEEEeecCCCCHHHHHHHHHHHHhh
Confidence            8999999999999999999998754

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.82  E-value=1.2e-19  Score=143.99  Aligned_cols=120  Identities=17%  Similarity=0.213  Sum_probs=96.2

Q ss_pred             EEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCC----------hhhHHhHHHHHHHHHhhc-CCCCeEE
Q 028466           50 TMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAS----------RQSFLNTTKWVEEVRTER-GSDVIIV  118 (208)
Q Consensus        50 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~ii  118 (208)
                      .+.+++  +.+.+|||+|++.++..+..++++++++|+|||+++          ..+++....|+..+.... ..+.|++
T Consensus       211 ~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pii  288 (402)
T 1azs_C          211 KFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI  288 (402)
T ss_dssp             EEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEE
T ss_pred             EeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEE
Confidence            344444  689999999999999999999999999999999998          789999999999887653 3679999


Q ss_pred             EEEeCCCCcCccC---c---------------------------CHHHHHHHH-----HH--------cCCeEEEeecCC
Q 028466          119 LVGNKTDLVDKRQ---V---------------------------SIEEGEAKA-----RE--------LNVMFIETSAKA  155 (208)
Q Consensus       119 vv~nK~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~S~~~  155 (208)
                      ||+||+|+...+.   .                           ...++..++     ..        ..+.++++||++
T Consensus       289 LvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d  368 (402)
T 1azs_C          289 LFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVD  368 (402)
T ss_dssp             EEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTC
T ss_pred             EEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeec
Confidence            9999999854321   1                           134455543     22        245678999999


Q ss_pred             CCCHHHHHHHHHHHcC
Q 028466          156 GFNIKALFRKIAAALP  171 (208)
Q Consensus       156 ~~~v~~~~~~l~~~~~  171 (208)
                      +.||+++|.++.+.+.
T Consensus       369 ~~nV~~vF~~v~~~I~  384 (402)
T 1azs_C          369 TENIRRVFNDCRDIIQ  384 (402)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            9999999999988774

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.82  E-value=3.6e-19  Score=134.97  Aligned_cols=123  Identities=13%  Similarity=0.156  Sum_probs=87.8

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhc-----
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR-----   80 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-----   80 (208)
                      ++.++|+|+|..|+|||||+|+|++..+. ....+..+.......+..++  ..+.+|||||+..+......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            57899999999999999999999988753 22233334444455556666  47999999999887766555543     


Q ss_pred             ----cCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCC--CeEEEEEeCCCCcCccCc
Q 028466           81 ----DSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSD--VIIVLVGNKTDLVDKRQV  132 (208)
Q Consensus        81 ----~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~~  132 (208)
                          .+|++++|++++... +.. ...|+..+....+.+  .|+++|+||+|+.+....
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~  169 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDEL  169 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTC
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCc
Confidence                789999999987643 333 345666666554433  489999999998644333

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.81  E-value=1.5e-20  Score=145.03  Aligned_cols=160  Identities=20%  Similarity=0.232  Sum_probs=101.5

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCC------cccee----------------------eee-------------
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNT------YQATI----------------------GID-------------   45 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~------~~~~~----------------------~~~-------------   45 (208)
                      ...++|+|+|.+|+|||||+|+|++..+.+.      +.++.                      +.+             
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            4568999999999999999999998877421      11220                      000             


Q ss_pred             --------eeEEEEEE-CCeEEEEEEEecCCch-------------hhccchhhhhccCCEEE-EEEeCCChhhHHhHHH
Q 028466           46 --------FLSKTMYL-EDRTVRLQLWDTAGQE-------------RFRSLIPSYIRDSSVAV-IVYDVASRQSFLNTTK  102 (208)
Q Consensus        46 --------~~~~~~~~-~~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~  102 (208)
                              .....+.+ ......+.||||||..             .+...+..+++.++.+| +|+|+++.........
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~  183 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  183 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence                    00000000 0012479999999964             34556777888888776 6999986433322223


Q ss_pred             HHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc--C-CeEEEeecCCCCCHHHHHHHHHHH
Q 028466          103 WVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL--N-VMFIETSAKAGFNIKALFRKIAAA  169 (208)
Q Consensus       103 ~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~--~-~~~~~~S~~~~~~v~~~~~~l~~~  169 (208)
                      ++..+.   ..+.|+++|+||+|+.+........++......  + ..++++||+++.|+++++++|.+.
T Consensus       184 ~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          184 IAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            333332   246899999999999754432222222111111  2 367899999999999999998874

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.80  E-value=7.6e-19  Score=148.60  Aligned_cols=121  Identities=15%  Similarity=0.162  Sum_probs=82.1

Q ss_pred             CCCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCC-------------c-----cceeeeeeeEEEEEECCeEEEEEE
Q 028466            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-------------Y-----QATIGIDFLSKTMYLEDRTVRLQL   62 (208)
Q Consensus         1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~-------------~-----~~~~~~~~~~~~~~~~~~~~~~~i   62 (208)
                      |......+..+|+|+|+.|+|||||+++|++......             .     ....++......+...  .+.+++
T Consensus         1 ~~s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nl   78 (665)
T 2dy1_A            1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFL   78 (665)
T ss_dssp             -----CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEE
T ss_pred             CCCCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEE
Confidence            4444445678999999999999999999984322100             0     1122333333333344  368999


Q ss_pred             EecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466           63 WDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV  127 (208)
Q Consensus        63 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~  127 (208)
                      |||||+..|...+..+++.+|++++|+|+++.-... ...++..+..   .+.|+++|+||+|+.
T Consensus        79 iDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~---~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           79 LDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER---LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             EECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred             EeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH---ccCCEEEEecCCchh
Confidence            999999999999999999999999999987642222 2334444433   358999999999985

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.78  E-value=8.9e-18  Score=138.45  Aligned_cols=115  Identities=23%  Similarity=0.220  Sum_probs=78.6

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCC--CC----------------C----CccceeeeeeeEEEEEECCeEEEEEEEec
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDK--FD----------------N----TYQATIGIDFLSKTMYLEDRTVRLQLWDT   65 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~--~~----------------~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   65 (208)
                      +..+|+|+|++|+|||||+++|+...  ..                +    +..+..++......+.+.+  +.+.||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liDT   89 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLDT   89 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEECC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEEC
Confidence            57899999999999999999998531  10                0    0011222222233344444  67999999


Q ss_pred             CCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466           66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD  128 (208)
Q Consensus        66 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~  128 (208)
                      ||+..|...+..+++.+|++|+|+|+++.... ....++..+.   ..+.|+++++||+|+..
T Consensus        90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~~---~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVTR---LRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred             CCChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence            99999999899999999999999999864221 1222222222   24689999999999854

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.78  E-value=2.4e-18  Score=137.58  Aligned_cols=162  Identities=16%  Similarity=0.121  Sum_probs=109.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh----hccchh---hhhccC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIP---SYIRDS   82 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~---~~~~~~   82 (208)
                      -.|+|+|++|+|||||++++.+........+..+.......+..++ ...+.+||+||...    +..+..   ..+..+
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            3589999999999999999987643211112222222233344443 23689999999742    111222   234579


Q ss_pred             CEEEEEEeCCChhhHHhHHHHHHHHHhhcC--CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466           83 SVAVIVYDVASRQSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK  160 (208)
Q Consensus        83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (208)
                      +.+++++|++ ...+..+..+...+.....  ...|.++|+||+|+...  ....++...+...+..++.+||++++|++
T Consensus       237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~  313 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP  313 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence            9999999997 4556666665555544321  24788888999998653  22344555556667899999999999999


Q ss_pred             HHHHHHHHHcCCCcc
Q 028466          161 ALFRKIAAALPGMET  175 (208)
Q Consensus       161 ~~~~~l~~~~~~~~~  175 (208)
                      +++++|.+.+.+.+.
T Consensus       314 eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          314 ALKEALHALVRSTPP  328 (416)
T ss_dssp             HHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999876544

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.77  E-value=8.4e-18  Score=142.74  Aligned_cols=116  Identities=21%  Similarity=0.283  Sum_probs=82.8

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcC--CC------CC----------CccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYD--KF------DN----------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~--~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (208)
                      .+..+|+|+|+.|+|||||+++|+..  .+      ..          +.....++......+.+.+  +.++||||||+
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTPG~   87 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTPGH   87 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECcCc
Confidence            46789999999999999999999832  11      00          0122333333344445554  67999999999


Q ss_pred             hhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466           69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD  128 (208)
Q Consensus        69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~  128 (208)
                      ..|...+..+++.+|++|+|+|+++.........|.. +..   .+.|+++|+||+|+..
T Consensus        88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            9999999999999999999999998666655554443 322   3689999999999854

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.77  E-value=6.5e-18  Score=128.59  Aligned_cols=122  Identities=12%  Similarity=0.120  Sum_probs=82.5

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchh-------hh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP-------SY   78 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~   78 (208)
                      .+.++|+++|.+|+|||||+|+|++..+.. ...+..+.+.....+..++  ..+.||||||+..+.....       .+
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            357999999999999999999999877632 2222333333333344444  6799999999876654322       11


Q ss_pred             --hccCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCC--CeEEEEEeCCCCcCccC
Q 028466           79 --IRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSD--VIIVLVGNKTDLVDKRQ  131 (208)
Q Consensus        79 --~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~  131 (208)
                        .+.+|++++|+|++.. ++.. ...|+..+....+.+  .|+++|+||+|+.+...
T Consensus       115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~  171 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG  171 (270)
T ss_dssp             TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred             hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCC
Confidence              3479999999998653 3333 246666666554433  68999999999965443

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.77  E-value=3.1e-19  Score=137.73  Aligned_cols=161  Identities=16%  Similarity=0.237  Sum_probs=86.0

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcC-CCCCCc--------cceeeeeeeEEEEEECCeEEEEEEEecCCc-------hh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYD-KFDNTY--------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-------ER   70 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~   70 (208)
                      .-.++|+|+|++|+|||||+++|.+. .++...        .++.........+...+....+++||++|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            34689999999999999999998875 343322        112222222222222344468999999998       44


Q ss_pred             hccchh-------hhhcc-------------CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466           71 FRSLIP-------SYIRD-------------SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR  130 (208)
Q Consensus        71 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~  130 (208)
                      +.....       .+++.             +++++++.+.+. .+++....  ..+... ....++++|+||.|+....
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l-~~~~~iilV~~K~Dl~~~~  171 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAI-HNKVNIVPVIAKADTLTLK  171 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHH-TTTSCEEEEECCGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHH-HhcCCEEEEEEeCCCCCHH
Confidence            554443       44333             234555555432 12333221  222222 2457899999999996543


Q ss_pred             Cc--CHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466          131 QV--SIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       131 ~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~~~  172 (208)
                      +.  ...++.+++..+++.++++|++++ +++++|..+.+.+.+
T Consensus       172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence            32  245778888899999999999999 999999999988754

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.76  E-value=3.2e-18  Score=132.95  Aligned_cols=165  Identities=19%  Similarity=0.206  Sum_probs=100.1

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCc------cceeeeeeeE--------------------------------
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY------QATIGIDFLS--------------------------------   48 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~------~~~~~~~~~~--------------------------------   48 (208)
                      ....+|+|+|.+|+|||||+|+|++..+.+..      .++.......                                
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE  101 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence            45689999999999999999999988762211      1110000000                                


Q ss_pred             -------------------EEEE-ECCeEEEEEEEecCCchh-------------hccchhhhhccCCEEEEEEeCCChh
Q 028466           49 -------------------KTMY-LEDRTVRLQLWDTAGQER-------------FRSLIPSYIRDSSVAVIVYDVASRQ   95 (208)
Q Consensus        49 -------------------~~~~-~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~   95 (208)
                                         ..+. .......+.||||||...             +......++..+|++|+|+|+.+..
T Consensus       102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~  181 (315)
T 1jwy_B          102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD  181 (315)
T ss_dssp             HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred             HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence                               0000 111124699999999753             4556677899999999999974322


Q ss_pred             hH-HhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecC---C---CCCHHHHHHHHHH
Q 028466           96 SF-LNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAK---A---GFNIKALFRKIAA  168 (208)
Q Consensus        96 s~-~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~---~---~~~v~~~~~~l~~  168 (208)
                      .. .....+...+   ...+.|+++|+||+|+.+........++.....++..++++++.   +   +.|+.++++.+.+
T Consensus       182 ~~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~  258 (315)
T 1jwy_B          182 LANSDALQLAKEV---DPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEIL  258 (315)
T ss_dssp             STTCSHHHHHHHH---CSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHh---CCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHH
Confidence            11 1111222222   22468999999999997554322322221111222556666654   4   7899999999998


Q ss_pred             HcCCCc
Q 028466          169 ALPGME  174 (208)
Q Consensus       169 ~~~~~~  174 (208)
                      .+...+
T Consensus       259 ~~~~~~  264 (315)
T 1jwy_B          259 YFKNHP  264 (315)
T ss_dssp             HHHTCT
T ss_pred             HHhCCC
Confidence            886543

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.76  E-value=6.6e-18  Score=143.46  Aligned_cols=161  Identities=13%  Similarity=0.187  Sum_probs=105.4

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCC-Ccccee--------------eeee--------------------------
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATI--------------GIDF--------------------------   46 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~--------------~~~~--------------------------   46 (208)
                      ..++|+|+|.+|+|||||+|+|++..+.. ...++.              ++.+                          
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            46899999999999999999999877532 222222              1100                          


Q ss_pred             -------------eEEEEEECCeE--EEEEEEecCCchh---hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHH
Q 028466           47 -------------LSKTMYLEDRT--VRLQLWDTAGQER---FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVR  108 (208)
Q Consensus        47 -------------~~~~~~~~~~~--~~~~i~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~  108 (208)
                                   ....+.+....  ..+.||||||...   ....+..+++.+|++|+|+|++++.+......|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                         00001111000  2589999999765   34456678899999999999998766666555543332


Q ss_pred             hhcCCCCeEEEEEeCCCCcCccCcCH------H----HHHHH----HHH---------cCCeEEEeecC-----------
Q 028466          109 TERGSDVIIVLVGNKTDLVDKRQVSI------E----EGEAK----ARE---------LNVMFIETSAK-----------  154 (208)
Q Consensus       109 ~~~~~~~~iivv~nK~D~~~~~~~~~------~----~~~~~----~~~---------~~~~~~~~S~~-----------  154 (208)
                      .   .+.|+++|+||+|+........      .    .+...    ...         ....++++||+           
T Consensus       228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~  304 (695)
T 2j69_A          228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ  304 (695)
T ss_dssp             T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred             h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence            2   3578999999999864431111      0    11111    111         12368999999           


Q ss_pred             ---CCCCHHHHHHHHHHHcC
Q 028466          155 ---AGFNIKALFRKIAAALP  171 (208)
Q Consensus       155 ---~~~~v~~~~~~l~~~~~  171 (208)
                         ++.|++++++.|.+.+.
T Consensus       305 ~~~~~~Gi~~L~~~L~~~l~  324 (695)
T 2j69_A          305 ADLDGTGFPKFMDSLNTFLT  324 (695)
T ss_dssp             CCCTTSSHHHHHHHHHHHHH
T ss_pred             hhhhccCHHHHHHHHHHHHH
Confidence               99999999999998774

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.76  E-value=3e-19  Score=142.47  Aligned_cols=85  Identities=18%  Similarity=0.196  Sum_probs=47.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEE---------------------EECC-eEEEEEEEecCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTM---------------------YLED-RTVRLQLWDTAG   67 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~-~~~~~~i~D~~G   67 (208)
                      ++|+|+|.+|||||||+|+|++........+..+++......                     .+++ ...++.||||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            589999999999999999999877432223333322222211                     1222 246899999999


Q ss_pred             chhh----ccch---hhhhccCCEEEEEEeCCCh
Q 028466           68 QERF----RSLI---PSYIRDSSVAVIVYDVASR   94 (208)
Q Consensus        68 ~~~~----~~~~---~~~~~~~d~~i~v~d~~~~   94 (208)
                      +...    ..+.   ..+++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            7542    2222   2457899999999999864

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.76  E-value=3.7e-17  Score=138.89  Aligned_cols=117  Identities=23%  Similarity=0.265  Sum_probs=83.4

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhc--CCCCC----------------CccceeeeeeeEEEEEECCeEEEEEEEecCC
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMY--DKFDN----------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (208)
                      ..+..+|+|+|.+|+|||||+++|+.  +.+..                +..+..++......+.+.+  +.++||||||
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG   84 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG   84 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence            35678999999999999999999984  22110                0012333333344455554  6799999999


Q ss_pred             chhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466           68 QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD  128 (208)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~  128 (208)
                      +..|...+..+++.+|++|+|+|+++..+......|.. +..   .+.|+++|+||+|+..
T Consensus        85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            99999999999999999999999997655554444432 332   3689999999999854

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.76  E-value=4.4e-17  Score=138.55  Aligned_cols=119  Identities=19%  Similarity=0.216  Sum_probs=83.2

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcC--CCCC----------------CccceeeeeeeEEEEEECC-----eEEEEEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYD--KFDN----------------TYQATIGIDFLSKTMYLED-----RTVRLQL   62 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~--~~~~----------------~~~~~~~~~~~~~~~~~~~-----~~~~~~i   62 (208)
                      ..+..+|+|+|+.|+|||||+++|+..  .+..                +..+..++......+.+.+     ..+.++|
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            356789999999999999999999742  1110                0012233333333333332     3378999


Q ss_pred             EecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466           63 WDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD  128 (208)
Q Consensus        63 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~  128 (208)
                      |||||+.+|...+..+++.+|++|+|+|+++.........| ..+.   ..+.|+++|+||+|+..
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~---~~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQAN---KYKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHH---HcCCCEEEEEeCCCccc
Confidence            99999999999999999999999999999975443333333 2222   24689999999999853

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.75  E-value=5.9e-19  Score=139.61  Aligned_cols=156  Identities=18%  Similarity=0.221  Sum_probs=102.1

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeee---e--------------------------------------
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGID---F--------------------------------------   46 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~---~--------------------------------------   46 (208)
                      .-.+|+|+|.+|+|||||+|+|++..+.+......+..   .                                      
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            34599999999999999999999987633222111100   0                                      


Q ss_pred             -----------eEEEEEE-CCeEEEEEEEecCCchhh-------------ccchhhhhccCCEEEEEEeCCChhhHHhHH
Q 028466           47 -----------LSKTMYL-EDRTVRLQLWDTAGQERF-------------RSLIPSYIRDSSVAVIVYDVASRQSFLNTT  101 (208)
Q Consensus        47 -----------~~~~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~  101 (208)
                                 ....+.+ ......+.+|||||...+             ......+++++|++|+|+|..+.+...  .
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence                       0000000 011235899999998765             556778899999999999876433222  2


Q ss_pred             HHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466          102 KWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus       102 ~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      .|+..+......+.|+++|+||+|+.+........+......++..|+.+++.++.++++.+..
T Consensus       191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred             HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence            3344444444456899999999999765554444444444556778999999998877765443

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.75  E-value=3.4e-18  Score=136.84  Aligned_cols=161  Identities=16%  Similarity=0.230  Sum_probs=82.5

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCc--------cceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-----
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY--------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----   73 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----   73 (208)
                      .-.++|+|+|++|+|||||+++|++..+....        .++.........+...+....+++||++|...+..     
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            34578999999999999999999987663211        11222222222222233334789999999765311     


Q ss_pred             --------------------chhhhhccCCEEEEEEeCCCh-hhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCccC
Q 028466           74 --------------------LIPSYIRDSSVAVIVYDVASR-QSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKRQ  131 (208)
Q Consensus        74 --------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~  131 (208)
                                          +...++.++++.+++|..... .++.... .|+..+.    .++|+|+|+||+|+....+
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~e  184 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEE  184 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHH
Confidence                                112234455544444444321 2343332 4555443    3689999999999876544


Q ss_pred             cCH--HHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          132 VSI--EEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       132 ~~~--~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      +..  .++...+..+++.++++|+.++.++.++|..|...++
T Consensus       185 v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP  226 (418)
T 2qag_C          185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP  226 (418)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred             HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence            433  5777888888999999999999999998888887664

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.75  E-value=1.3e-18  Score=134.28  Aligned_cols=135  Identities=19%  Similarity=0.156  Sum_probs=109.7

Q ss_pred             HHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChh-hHHhHH
Q 028466           24 SIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ-SFLNTT  101 (208)
Q Consensus        24 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~  101 (208)
                      +|+.+++.+.|. ..+.+|++..+. ..+..++   .+.+||+  ++.|..++..+++++|++|+|||+++++ ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            688889988888 788899884443 3322222   6899999  8999999999999999999999999987 688889


Q ss_pred             HHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC--CeEEEeecCCCCCHHHHHHHHHHH
Q 028466          102 KWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN--VMFIETSAKAGFNIKALFRKIAAA  169 (208)
Q Consensus       102 ~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~  169 (208)
                      .|+..+..   .++|+++|+||+|+.+..++  .+...++..++  +.++++||+++.|++++|..+...
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ge  170 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGK  170 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSS
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCC
Confidence            99887654   36899999999999654332  45667777777  899999999999999999987654

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.74  E-value=1.2e-17  Score=131.56  Aligned_cols=121  Identities=18%  Similarity=0.228  Sum_probs=92.4

Q ss_pred             EEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCC----------hhhHHhHHHHHHHHHhhc-CCCCeE
Q 028466           49 KTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAS----------RQSFLNTTKWVEEVRTER-GSDVII  117 (208)
Q Consensus        49 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~i  117 (208)
                      ..+.+++  +.+.+|||+|++.++..+..++++++++|+|+|+++          ..++.....|+..+.... ..+.|+
T Consensus       194 ~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~pi  271 (362)
T 1zcb_A          194 YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI  271 (362)
T ss_dssp             EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred             EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCE
Confidence            4455554  789999999999999999999999999999999998          678999888888887643 367999


Q ss_pred             EEEEeCCCCcCcc----------------CcCHHHHHHHHH-----------HcCCeEEEeecCCCCCHHHHHHHHHHHc
Q 028466          118 VLVGNKTDLVDKR----------------QVSIEEGEAKAR-----------ELNVMFIETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       118 ivv~nK~D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~S~~~~~~v~~~~~~l~~~~  170 (208)
                      ||++||+|+.++.                .....++..++.           ..++.++++||+++.||+++|+++.+.+
T Consensus       272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i  351 (362)
T 1zcb_A          272 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI  351 (362)
T ss_dssp             EEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence            9999999986322                255667776652           3357889999999999999999999887


Q ss_pred             C
Q 028466          171 P  171 (208)
Q Consensus       171 ~  171 (208)
                      .
T Consensus       352 ~  352 (362)
T 1zcb_A          352 L  352 (362)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.70  E-value=6.1e-16  Score=128.05  Aligned_cols=115  Identities=16%  Similarity=0.171  Sum_probs=81.3

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcC------------------CC----CCCccceeeeeeeEEEEEECCeEEEEEEEec
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYD------------------KF----DNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   65 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   65 (208)
                      +.-+|+|+|+.++|||||.++|+..                  .+    ..+..+.+++.-....+.+++  +.++|+||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT  107 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT  107 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence            5678999999999999999998611                  11    223445555555666667766  67999999


Q ss_pred             CCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466           66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD  128 (208)
Q Consensus        66 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~  128 (208)
                      |||.+|...+.+.++-+|++|+|+|+...=......-| ..+..   .++|.++++||+|...
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~---~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM---RATPVMTFVNKMDREA  166 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSCC
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH---hCCceEEEEecccchh
Confidence            99999999999999999999999999854222222223 33332   3699999999999843

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.70  E-value=5.9e-17  Score=119.53  Aligned_cols=155  Identities=18%  Similarity=0.157  Sum_probs=95.8

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeee------------EEEEEECC------------------eE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL------------SKTMYLED------------------RT   57 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~------------------~~   57 (208)
                      +..+|+|+|.+|+|||||+++|...............+..            .....++.                  ..
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            3578999999999999999999865221111111110100            00011111                  12


Q ss_pred             EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHH
Q 028466           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEG  137 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~  137 (208)
                      +.+.+|||+|+-...   ..+....+.+++|+|+.+...  ....+...      .+.|+++|+||+|+.+.......++
T Consensus       109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~  177 (221)
T 2wsm_A          109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI------FRVADLIVINKVALAEAVGADVEKM  177 (221)
T ss_dssp             CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH------HHTCSEEEEECGGGHHHHTCCHHHH
T ss_pred             CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh------hhcCCEEEEecccCCcchhhHHHHH
Confidence            468899999851100   011135688999999875421  11111111      1367889999999865433456666


Q ss_pred             HHHHHHc--CCeEEEeecCCCCCHHHHHHHHHHHcCCC
Q 028466          138 EAKAREL--NVMFIETSAKAGFNIKALFRKIAAALPGM  173 (208)
Q Consensus       138 ~~~~~~~--~~~~~~~S~~~~~~v~~~~~~l~~~~~~~  173 (208)
                      ...+...  +++++++|++++.|+++++++|.+.+...
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            6666654  47899999999999999999999987543

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.69  E-value=1e-15  Score=120.08  Aligned_cols=145  Identities=12%  Similarity=0.084  Sum_probs=91.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeE---------------EEEEEEecCCchhhc--
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQERFR--   72 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~--   72 (208)
                      ++|+|+|.+|+|||||+|+|++..+.....+..+++.....+.+.+..               ..+.+|||||+..+.  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            789999999999999999999877533333333333333334444321               469999999987643  


Q ss_pred             -----cchhhhhccCCEEEEEEeCCCh----------hhHHhHHHHHHH-------------------------------
Q 028466           73 -----SLIPSYIRDSSVAVIVYDVASR----------QSFLNTTKWVEE-------------------------------  106 (208)
Q Consensus        73 -----~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~-------------------------------  106 (208)
                           .....+++.+|++++|+|+++.          +.+..+..+..+                               
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~  162 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL  162 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence                 2234458999999999999852          122221111000                               


Q ss_pred             ---------HH-------------------hhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecC
Q 028466          107 ---------VR-------------------TER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAK  154 (208)
Q Consensus       107 ---------~~-------------------~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  154 (208)
                               +.                   .+. ...+|+++++|+.|..-........++.++...++.++++||+
T Consensus       163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~  239 (363)
T 1jal_A          163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA  239 (363)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence                     00                   011 1348999999999963212233567778888889999999965

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.67  E-value=1.7e-17  Score=130.82  Aligned_cols=159  Identities=19%  Similarity=0.228  Sum_probs=94.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCc------cceeee--------------------ee--------------
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY------QATIGI--------------------DF--------------   46 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~------~~~~~~--------------------~~--------------   46 (208)
                      ...++|+|+|.+|+|||||+|+|++..+.+..      .++...                    ++              
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            34579999999999999999999988763211      122100                    00              


Q ss_pred             ---------eEEEEEE-CCeEEEEEEEecCCch-------------hhccchhhhhccCC-EEEEEEeCCChhhHHhHHH
Q 028466           47 ---------LSKTMYL-EDRTVRLQLWDTAGQE-------------RFRSLIPSYIRDSS-VAVIVYDVASRQSFLNTTK  102 (208)
Q Consensus        47 ---------~~~~~~~-~~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~  102 (208)
                               ....+.+ ......+.||||||..             .+..+...|+...+ ++++|.+++..  +... .
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~--~~~~-~  185 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--LANS-D  185 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC--GGGC-H
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc--cchh-H
Confidence                     0000111 0112469999999963             34456667776665 55556676542  2221 1


Q ss_pred             HHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH--cC-CeEEEeecCCCCCHHHHHHHHHH
Q 028466          103 WVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE--LN-VMFIETSAKAGFNIKALFRKIAA  168 (208)
Q Consensus       103 ~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~S~~~~~~v~~~~~~l~~  168 (208)
                      +...+......+.|+++|+||.|+.+........++.....  .+ ..++++||+++.|++++++.+.+
T Consensus       186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            22222223335689999999999975433222221110001  12 35788999999999999999876

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.64  E-value=5e-16  Score=134.43  Aligned_cols=117  Identities=18%  Similarity=0.254  Sum_probs=84.3

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCC------------CC----CCccceeeeeeeEEEEEE--------------CCe
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDK------------FD----NTYQATIGIDFLSKTMYL--------------EDR   56 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~------------~~----~~~~~~~~~~~~~~~~~~--------------~~~   56 (208)
                      .+..+|+|+|+.++|||||+++|+...            +.    .+..+.+++......+.+              ++.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            456899999999999999999998531            11    111222232222222222              334


Q ss_pred             EEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV  127 (208)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~  127 (208)
                      .+.++||||||+.+|...+..+++.+|++|+|+|++++.++.....|.....    .+.|+++|+||+|+.
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence            6889999999999999999999999999999999998766666554543322    368999999999985

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.64  E-value=3e-16  Score=129.99  Aligned_cols=120  Identities=18%  Similarity=0.211  Sum_probs=80.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCC---CCccceeeeeeeEEE-----EEECC----------------------e
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKT-----MYLED----------------------R   56 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~-----~~~~~----------------------~   56 (208)
                      ...++|+|+|.+|+|||||+|+|++..+.   ....++.+.......     +..+.                      .
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            45789999999999999999999998763   222222211000000     00000                      0


Q ss_pred             -E---------EEEEEEecCCchh-----------hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC
Q 028466           57 -T---------VRLQLWDTAGQER-----------FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDV  115 (208)
Q Consensus        57 -~---------~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  115 (208)
                       .         ..+.||||||...           |...+..++..+|++|+|+|+++.........++..+..   .+.
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~  219 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HED  219 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGG
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCC
Confidence             0         2589999999864           445667788999999999999875444445555555432   357


Q ss_pred             eEEEEEeCCCCcCc
Q 028466          116 IIVLVGNKTDLVDK  129 (208)
Q Consensus       116 ~iivv~nK~D~~~~  129 (208)
                      |+++|+||+|+...
T Consensus       220 pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          220 KIRVVLNKADMVET  233 (550)
T ss_dssp             GEEEEEECGGGSCH
T ss_pred             CEEEEEECCCccCH
Confidence            89999999999754

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.63  E-value=8.4e-18  Score=124.54  Aligned_cols=153  Identities=18%  Similarity=0.232  Sum_probs=93.1

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeee------------EEEEEEC-CeE-----------------
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL------------SKTMYLE-DRT-----------------   57 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~-----------------   57 (208)
                      +.++|+|+|.+|||||||+++|+...+...+.++...++.            ...+.++ +..                 
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4689999999999999999999977654444444443332            1222222 110                 


Q ss_pred             --EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHH
Q 028466           58 --VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIE  135 (208)
Q Consensus        58 --~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~  135 (208)
                        ..+.++|++|.-...   ..+-...+..+.+.|+........  .... .     ...|.++|+||+|+.+..+....
T Consensus       117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~-~-----~~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPG-I-----MKTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHH-H-----HTTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhh-H-----hhcCCEEEEeccccCchhHHHHH
Confidence              135555665521000   011122345566777532111110  0011 1     13677999999999654445566


Q ss_pred             HHHHHHHHc--CCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          136 EGEAKAREL--NVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       136 ~~~~~~~~~--~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      +...++..+  +++++++||+++.|++++|++|.+.+.
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence            777777765  578999999999999999999988763

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.63  E-value=3.1e-16  Score=123.68  Aligned_cols=104  Identities=16%  Similarity=0.128  Sum_probs=69.5

Q ss_pred             EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC--HH
Q 028466           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS--IE  135 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--~~  135 (208)
                      +.+.||||||...   .....+..+|++++|+|+...+....+..   .+     .+.|+++|+||+|+.......  ..
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~---~~-----~~~p~ivVlNK~Dl~~~~~~~~~~~  240 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK---GV-----LELADIVVVNKADGEHHKEARLAAR  240 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT---TS-----GGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH---hH-----hhcCCEEEEECCCCcChhHHHHHHH
Confidence            5799999999543   22334688999999999876543322221   01     236889999999985432211  11


Q ss_pred             HHHHHHHHc-------CCeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466          136 EGEAKAREL-------NVMFIETSAKAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       136 ~~~~~~~~~-------~~~~~~~S~~~~~~v~~~~~~l~~~~~~  172 (208)
                      +........       +.+++++||+++.|+++++++|.+.+..
T Consensus       241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            222222212       4789999999999999999999988754

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.60  E-value=3.2e-14  Score=112.21  Aligned_cols=155  Identities=14%  Similarity=0.116  Sum_probs=104.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh-------ccchhhhhcc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRD   81 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~   81 (208)
                      ..+|+|+|.||||||||+|+|++........+..|++.....+.+.+  .++.++||||.-.-       .......++.
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            46899999999999999999998776555567777888888888887  56899999995321       1223445789


Q ss_pred             CCEEEEEEeCCChhh-HHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC--------ccCcCHHHHHHHHHHcCCeEEEee
Q 028466           82 SSVAVIVYDVASRQS-FLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD--------KRQVSIEEGEAKARELNVMFIETS  152 (208)
Q Consensus        82 ~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~S  152 (208)
                      +|++++|+|+++|-. .+.+...+..+... ....|.++++||.|...        ......++++.....+.+..-++-
T Consensus       150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~-l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~  228 (376)
T 4a9a_A          150 CNLLFIILDVNKPLHHKQIIEKELEGVGIR-LNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIA  228 (376)
T ss_dssp             CSEEEEEEETTSHHHHHHHHHHHHHHTTEE-ETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEE
T ss_pred             cCccccccccCccHHHHHHHHHHHHHhhHh-hccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCee
Confidence            999999999998632 22233333222211 13467778889999632        234556777777777765433444


Q ss_pred             cCCCCCHHHHHHHH
Q 028466          153 AKAGFNIKALFRKI  166 (208)
Q Consensus       153 ~~~~~~v~~~~~~l  166 (208)
                      ...+...+++.+.+
T Consensus       229 ~~~nv~eddl~d~~  242 (376)
T 4a9a_A          229 FRCDATVDDLIDVL  242 (376)
T ss_dssp             ECSCCCHHHHHHHH
T ss_pred             ecccCCHHHHHHHH
Confidence            44455555555433

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.59  E-value=7.2e-16  Score=121.23  Aligned_cols=102  Identities=13%  Similarity=0.060  Sum_probs=62.1

Q ss_pred             EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHH
Q 028466           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEG  137 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~  137 (208)
                      +.+.++||+|....   .......+|++++|+|++.+.....+..   .+     ...|.++|+||+|+.+.... ....
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~  234 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ  234 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence            46899999996422   2334678999999999986533221111   11     13577888899998532111 0011


Q ss_pred             HHHHH----------HcCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          138 EAKAR----------ELNVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       138 ~~~~~----------~~~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      ..+..          ..+.+++.+|++++.|+++++++|.+.+.
T Consensus       235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            11111          12457899999999999999999998764

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.58  E-value=8.2e-16  Score=129.58  Aligned_cols=159  Identities=17%  Similarity=0.148  Sum_probs=106.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc--CC------C----------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY--DK------F----------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~--~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (208)
                      .+|+|+|+.++|||||.++|+.  +.      .          ..+..+.+++.-....+.+++  +.++|+|||||.+|
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~DF   80 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMDF   80 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSST
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHHH
Confidence            5799999999999999999862  11      1          111222344443334444444  67999999999999


Q ss_pred             ccchhhhhccCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc------------------
Q 028466           72 RSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV------------------  132 (208)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~------------------  132 (208)
                      ...+.+.++-+|++|+|+|+...  .+. .+..+..+..+   ++|.++++||+|....+..                  
T Consensus        81 ~~Ev~raL~~~DgavlVVDa~~G--V~~qT~~v~~~a~~~---~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~  155 (638)
T 3j25_A           81 LAEVYRSLSVLDGAILLISAKDG--VQAQTRILFHALRKM---GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ  155 (638)
T ss_dssp             HHHHHHHHTTCSEEECCEESSCT--TCSHHHHHHHHHHHH---TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCC
T ss_pred             HHHHHHHHHHhCEEEEEEeCCCC--CcHHHHHHHHHHHHc---CCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccc
Confidence            99999999999999999999853  322 22333333333   4888899999997432100                  


Q ss_pred             --------------CHHHH-----------H-------------------HHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466          133 --------------SIEEG-----------E-------------------AKARELNVMFIETSAKAGFNIKALFRKIAA  168 (208)
Q Consensus       133 --------------~~~~~-----------~-------------------~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (208)
                                    .....           .                   .+....-.+++..||+++.|++.+++.|.+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~  235 (638)
T 3j25_A          156 KVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITN  235 (638)
T ss_dssp             CCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHH
T ss_pred             eeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhc
Confidence                          00000           0                   000111246788899999999999999999


Q ss_pred             HcCCCcc
Q 028466          169 ALPGMET  175 (208)
Q Consensus       169 ~~~~~~~  175 (208)
                      .++....
T Consensus       236 ~~p~p~~  242 (638)
T 3j25_A          236 KFYSSTH  242 (638)
T ss_dssp             SCCCSGG
T ss_pred             cccCccc
Confidence            8875543

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.58  E-value=3.1e-14  Score=112.22  Aligned_cols=84  Identities=18%  Similarity=0.150  Sum_probs=54.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECC-------------------eEEEEEEEecCCchh
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-------------------RTVRLQLWDTAGQER   70 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~~   70 (208)
                      ++|+|+|.+|+|||||+|+|++........+..+++.......+..                   ....+.+|||||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            6899999999999999999987643211112112211111122211                   124699999999875


Q ss_pred             hc-------cchhhhhccCCEEEEEEeCCC
Q 028466           71 FR-------SLIPSYIRDSSVAVIVYDVAS   93 (208)
Q Consensus        71 ~~-------~~~~~~~~~~d~~i~v~d~~~   93 (208)
                      ..       ......++.+|++++|+|+++
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            42       123345799999999999985

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.58  E-value=8.8e-14  Score=118.69  Aligned_cols=115  Identities=18%  Similarity=0.167  Sum_probs=78.4

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcC--------C------C----CCCccceeeeeeeEEEEEECC-----eEEEEEEEe
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYD--------K------F----DNTYQATIGIDFLSKTMYLED-----RTVRLQLWD   64 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~--------~------~----~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~D   64 (208)
                      +--+|+|+|+.++|||||.++|+..        .      +    ..+..+.+++.-....+.+.+     ..+.++++|
T Consensus        12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID   91 (709)
T 4fn5_A           12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID   91 (709)
T ss_dssp             GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred             HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence            4468999999999999999998611        1      1    123344555555555555542     357899999


Q ss_pred             cCCchhhccchhhhhccCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466           65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLV  127 (208)
Q Consensus        65 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~  127 (208)
                      ||||.+|...+.+.++-+|++|+|+|+...  ... .+..+..+..   .+.|.++++||+|..
T Consensus        92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveG--V~~qT~~v~~~a~~---~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSG--VEPQSETVWRQANK---YGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CCSCTTCHHHHHHHHHHCSEEEEEEETTTC--SCHHHHHHHHHHHH---HTCCEEEEEECSSST
T ss_pred             CCCCcccHHHHHHHHHHhCeEEEEEECCCC--CchhHHHHHHHHHH---cCCCeEEEEcccccc
Confidence            999999999999999999999999999843  322 2233333333   258999999999974

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.54  E-value=6.6e-15  Score=115.50  Aligned_cols=103  Identities=17%  Similarity=0.112  Sum_probs=65.6

Q ss_pred             EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCH--H
Q 028466           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSI--E  135 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~--~  135 (208)
                      +.+.||||||.......   ....+|++++|+|++....+..+..   ..     .+.|.++|+||+|+........  .
T Consensus       149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence            57999999997654432   4689999999999975533221111   01     1356788999999864321111  1


Q ss_pred             HHHHHHHHc-------CCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          136 EGEAKAREL-------NVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       136 ~~~~~~~~~-------~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      +.+.....+       ...++++||+++.|+++++++|.+.+.
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            222222222       357899999999999999999998764

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.53  E-value=9.6e-15  Score=110.39  Aligned_cols=109  Identities=17%  Similarity=0.055  Sum_probs=68.3

Q ss_pred             EEEEEEecCCchhhccchh------hhhccCCEEEEEEeCCCh---hhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466           58 VRLQLWDTAGQERFRSLIP------SYIRDSSVAVIVYDVASR---QSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD  128 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~  128 (208)
                      +.+.||||||...+.....      ..+.. +++|+++|+...   ..+.....+.....  ...+.|+++|+||+|+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID--LRLGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH--HHHTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh--cccCCCeEEEEecccccc
Confidence            4799999999876543221      24456 899999987532   22222211111111  112588999999999864


Q ss_pred             ccCcCHHHHHH----------------------------HHHHcC--CeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          129 KRQVSIEEGEA----------------------------KARELN--VMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       129 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      ..+.  .++..                            .+.+++  .+++++|++++.|+++++++|.+.+.
T Consensus       186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            3221  11111                            123333  47999999999999999999998764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.50  E-value=2.2e-14  Score=121.79  Aligned_cols=159  Identities=20%  Similarity=0.219  Sum_probs=96.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceee-------------------------------------------
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIG-------------------------------------------   43 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~-------------------------------------------   43 (208)
                      ....+|+|+|.+++|||||+|+|++..+.+......|                                           
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            3457999999999999999999998776221110000                                           


Q ss_pred             --------eeeeEEEEEECCeEEEEEEEecCCchh-------------hccchhhhh-ccCCEEEEEEeCCChhhHHhHH
Q 028466           44 --------IDFLSKTMYLEDRTVRLQLWDTAGQER-------------FRSLIPSYI-RDSSVAVIVYDVASRQSFLNTT  101 (208)
Q Consensus        44 --------~~~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~  101 (208)
                              .+.....+...+ ...+.|+||||...             +......|+ ..+|++++|+|++.+.......
T Consensus       129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l  207 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  207 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred             cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence                    000011111111 12588999999543             223444444 5789999999998642222222


Q ss_pred             HHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH--cC-CeEEEeecCCCCCHHHHHHHHHHH
Q 028466          102 KWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE--LN-VMFIETSAKAGFNIKALFRKIAAA  169 (208)
Q Consensus       102 ~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~S~~~~~~v~~~~~~l~~~  169 (208)
                      .++..+.   ..+.|+++|+||.|+.+...............  .+ ..++.+||+++.|++++++.|.+.
T Consensus       208 ~ll~~L~---~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          208 KIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHHC---TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHHH---hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            2233332   34689999999999975543322211100000  12 367889999999999999999873

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.43  E-value=5.4e-13  Score=102.86  Aligned_cols=99  Identities=21%  Similarity=0.181  Sum_probs=80.5

Q ss_pred             chhhccchhhhhccCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC-HHHHHHHHHHcC
Q 028466           68 QERFRSLIPSYIRDSSVAVIVYDVASRQ-SFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS-IEEGEAKARELN  145 (208)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~-~~~~~~~~~~~~  145 (208)
                      ++.+..+.+.++.++|++++|+|++++. ++..+..|+..+..   .++|+++|+||+|+.+..+.. ..+...++...+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            6778888888999999999999999886 88888888886654   468999999999996543222 345566667778


Q ss_pred             CeEEEeecCCCCCHHHHHHHHHHH
Q 028466          146 VMFIETSAKAGFNIKALFRKIAAA  169 (208)
Q Consensus       146 ~~~~~~S~~~~~~v~~~~~~l~~~  169 (208)
                      +.++++||+++.|++++++.+...
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l~G~  166 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYLEGF  166 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHTTTC
T ss_pred             CeEEEEECCCCCCHHHHHhhccCc
Confidence            999999999999999999887654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.42  E-value=6e-14  Score=109.74  Aligned_cols=103  Identities=12%  Similarity=0.099  Sum_probs=62.7

Q ss_pred             EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHH
Q 028466           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEG  137 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~  137 (208)
                      +.+.|+||+|.....   ......+|++++|+|+...+....+...   +.     ..+.++++||.|+...........
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~~  216 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAAA  216 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHHH
Confidence            579999999975322   2335789999999998654322111111   11     134466679999743222111112


Q ss_pred             HHHHHH----------cCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          138 EAKARE----------LNVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       138 ~~~~~~----------~~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      ..+...          .+.+++.+|++++.|++++++.|.+...
T Consensus       217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            222211          1457899999999999999999998764

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.38  E-value=5.2e-13  Score=105.74  Aligned_cols=88  Identities=16%  Similarity=0.099  Sum_probs=52.8

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCe---------------EEEEEEEecCCchhhc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR   72 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~   72 (208)
                      ..++|+|+|.+|+|||||+|+|++..+.....++.|++.....+.+.+.               ...+.+|||||.....
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            4689999999999999999999988765444555555555555554432               1259999999987644


Q ss_pred             c-------chhhhhccCCEEEEEEeCCChh
Q 028466           73 S-------LIPSYIRDSSVAVIVYDVASRQ   95 (208)
Q Consensus        73 ~-------~~~~~~~~~d~~i~v~d~~~~~   95 (208)
                      .       .+..+++.+|++++|+|+++.+
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence            3       4566789999999999998543

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.38  E-value=2.3e-11  Score=96.52  Aligned_cols=86  Identities=17%  Similarity=0.193  Sum_probs=62.8

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCC-CCCccceeeeeeeEEEEEECCe---------------EEEEEEEecCCchh-
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQER-   70 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~-   70 (208)
                      +..++.|+|++|+|||||+|.|++... .....++.+++.....+.+.+.               ...+.+||+||... 
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            457999999999999999999998776 4445565555555555555541               13589999999543 


Q ss_pred             ------hccchhhhhccCCEEEEEEeCCC
Q 028466           71 ------FRSLIPSYIRDSSVAVIVYDVAS   93 (208)
Q Consensus        71 ------~~~~~~~~~~~~d~~i~v~d~~~   93 (208)
                            +.......++.+|++++|+|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                  23344556789999999999863

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.29  E-value=3e-12  Score=92.06  Aligned_cols=105  Identities=7%  Similarity=-0.074  Sum_probs=68.5

Q ss_pred             cCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHH---HHHHhhc--CCCCeEEEEEeCC-CCcCccCcCHHHHH
Q 028466           65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWV---EEVRTER--GSDVIIVLVGNKT-DLVDKRQVSIEEGE  138 (208)
Q Consensus        65 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~--~~~~~iivv~nK~-D~~~~~~~~~~~~~  138 (208)
                      .+|+..++.+|..|+.++|++|||+|.+|.+.++ ....+   ..+....  ..+.|++|++||. |+...  +...++.
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~  185 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLA  185 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHH
Confidence            4488899999999999999999999999875433 33333   2222222  2578999999995 66433  3344443


Q ss_pred             HHHHH----cCCeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466          139 AKARE----LNVMFIETSAKAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       139 ~~~~~----~~~~~~~~S~~~~~~v~~~~~~l~~~~~~  172 (208)
                      ....-    ....+..|||.+|+|+.+.++||.+.+..
T Consensus       186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~  223 (227)
T 3l82_B          186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  223 (227)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred             HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence            33221    23468999999999999999999988743

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.14  E-value=9.4e-11  Score=88.31  Aligned_cols=105  Identities=7%  Similarity=-0.078  Sum_probs=73.1

Q ss_pred             cCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHH---HHH-hhc-CCCCeEEEEEeC-CCCcCccCcCHHHHH
Q 028466           65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVE---EVR-TER-GSDVIIVLVGNK-TDLVDKRQVSIEEGE  138 (208)
Q Consensus        65 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~---~~~-~~~-~~~~~iivv~nK-~D~~~~~~~~~~~~~  138 (208)
                      .+|++..+..|..|+.++|++|||+|.+|.+.++ ....+.   .+. ... ..+.|++|++|| .|+...  +...++.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--ms~~EI~  270 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLA  270 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--CCHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--CCHHHHH
Confidence            4678899999999999999999999999876543 222221   222 221 257899999997 577543  3344433


Q ss_pred             HHHHH----cCCeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466          139 AKARE----LNVMFIETSAKAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       139 ~~~~~----~~~~~~~~S~~~~~~v~~~~~~l~~~~~~  172 (208)
                      ....-    ....+..+||.+|+|+.+.++||.+.+..
T Consensus       271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~  308 (312)
T 3l2o_B          271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  308 (312)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred             HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence            33221    23468999999999999999999998853

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.04  E-value=4.7e-10  Score=88.68  Aligned_cols=97  Identities=22%  Similarity=0.304  Sum_probs=73.0

Q ss_pred             CchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHH----HHHH
Q 028466           67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGE----AKAR  142 (208)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~----~~~~  142 (208)
                      ..+.|...+..+.+.+|++++|+|++++.     ..|...+.... .+.|+++|+||+|+.+.. ....+..    ..+.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence            45788899999999999999999999853     34444444443 368999999999996543 2233333    3356


Q ss_pred             HcCC---eEEEeecCCCCCHHHHHHHHHHHc
Q 028466          143 ELNV---MFIETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       143 ~~~~---~~~~~S~~~~~~v~~~~~~l~~~~  170 (208)
                      ..+.   .++.+||+++.|++++++.|.+..
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            6676   799999999999999999998765

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.03  E-value=8.5e-10  Score=88.18  Aligned_cols=140  Identities=14%  Similarity=0.211  Sum_probs=70.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCc----cceeeeeeeEEEEEECCeEEEEEEEecCCchhhc-------------
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTY----QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------------   72 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------------   72 (208)
                      ++++|+|++|+|||||++.|.+..+....    .+..........+...+-...++++|++|.....             
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i  122 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI  122 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence            56999999999999999999877542211    1222222111222222222368999999854210             


Q ss_pred             -cch----hhh---------hccC--CE-EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC--
Q 028466           73 -SLI----PSY---------IRDS--SV-AVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS--  133 (208)
Q Consensus        73 -~~~----~~~---------~~~~--d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--  133 (208)
                       ..+    ..+         +..+  |+ ++|+.|+..+  +....  +..+... ..++|+|+|.||+|.....+..  
T Consensus       123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~--l~~~D--ieilk~L-~~~~~vI~Vi~KtD~Lt~~E~~~l  197 (427)
T 2qag_B          123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS--LKSLD--LVTMKKL-DSKVNIIPIIAKADAISKSELTKF  197 (427)
T ss_dssp             HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHH--HHHHHHT-CSCSEEEEEESCGGGSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--CCHHH--HHHHHHH-hhCCCEEEEEcchhccchHHHHHH
Confidence             011    111         1122  33 5556666532  22221  1112222 2578999999999986543321  


Q ss_pred             HHHHHHHHHHcCCeEEEeecC
Q 028466          134 IEEGEAKARELNVMFIETSAK  154 (208)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~S~~  154 (208)
                      ...+.......++.++.+|..
T Consensus       198 ~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          198 KIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             HHHHHHHHBTTBCCCCCCC--
T ss_pred             HHHHHHHHHHcCCcEEecCCC
Confidence            222333334457888888854

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.02  E-value=3.6e-11  Score=95.13  Aligned_cols=138  Identities=17%  Similarity=0.189  Sum_probs=83.2

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcC------CCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-------ch
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYD------KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LI   75 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~   75 (208)
                      ..+++++|.+|+|||||+|+|++.      .......+..+.+  ...+.+..   .+.++||||......       ..
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~  236 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLES---GATLYDTPGIINHHQMAHFVDARD  236 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECST---TCEEEECCSCCCCSSGGGGSCTTT
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHH
Confidence            468999999999999999999875      2222223333332  22333333   278999999643221       11


Q ss_pred             hhhh---ccCCEEEEEEeCCCh---hhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEE
Q 028466           76 PSYI---RDSSVAVIVYDVASR---QSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFI  149 (208)
Q Consensus        76 ~~~~---~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  149 (208)
                      ...+   +..|.+++++++...   ..+..       +......+.|+++++||.|.....+. ......+.+..+..+.
T Consensus       237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-------l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~  308 (369)
T 3ec1_A          237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR-------LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLS  308 (369)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTTEE-------EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBC
T ss_pred             HHHHhcccccCceEEEEcCCceEEECCEEE-------EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccC
Confidence            1222   678999999998421   11111       11223356899999999998654333 3344455556677666


Q ss_pred             EeecCCCCCH
Q 028466          150 ETSAKAGFNI  159 (208)
Q Consensus       150 ~~S~~~~~~v  159 (208)
                      +.++.+.+++
T Consensus       309 p~~~~~~~~~  318 (369)
T 3ec1_A          309 PPSKRYAAEF  318 (369)
T ss_dssp             SSCGGGTTTC
T ss_pred             CCCchhhhhc
Confidence            6666554443

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.95  E-value=6.9e-10  Score=90.75  Aligned_cols=151  Identities=18%  Similarity=0.183  Sum_probs=83.3

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhh------cCCCC----CCcccee-----------eeeeeEEEEE-------------E
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFM------YDKFD----NTYQATI-----------GIDFLSKTMY-------------L   53 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~------~~~~~----~~~~~~~-----------~~~~~~~~~~-------------~   53 (208)
                      +...|+|+|.+|+||||+++.|.      +.+..    +.+.+..           ++.+......             .
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999987      33220    0000100           0111110000             0


Q ss_pred             CCeEEEEEEEecCCchhhcc----chhhh--hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeE-EEEEeCCCC
Q 028466           54 EDRTVRLQLWDTAGQERFRS----LIPSY--IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVII-VLVGNKTDL  126 (208)
Q Consensus        54 ~~~~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i-ivv~nK~D~  126 (208)
                      ....+.+.|+||||......    .....  ...+|.+++|+|+.......   .....+...    .|+ ++|+||.|.
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~~----~~i~gvVlNK~D~  252 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKDK----VDVASVIVTKLDG  252 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHHH----HCCCCEEEECTTS
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHhh----cCceEEEEeCCcc
Confidence            00235799999999653221    11111  23789999999998643211   112222221    453 777899998


Q ss_pred             cCccCcCHHHHHHHHHHcCCeE------------------EEeecCCCCC-HHHHHHHHHHH
Q 028466          127 VDKRQVSIEEGEAKARELNVMF------------------IETSAKAGFN-IKALFRKIAAA  169 (208)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~S~~~~~~-v~~~~~~l~~~  169 (208)
                      .....    .+.......++++                  +.+|+..|.| +.++++++.+.
T Consensus       253 ~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          253 HAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            53211    1222333444432                  3468888989 99999999876

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.94  E-value=2.3e-08  Score=79.91  Aligned_cols=159  Identities=15%  Similarity=0.166  Sum_probs=86.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCcccee---eeeeeEEEEEECCeEEEEEEEecCCchhhccchhhh-----hc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI---GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----IR   80 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----~~   80 (208)
                      ...++|+|++|+|||||+|.+.+...+.......   ..+.....+.. .....+++||++|..........+     +.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~-~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc-cccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            3589999999999999999998754322211111   00000111111 111157899999864322222222     33


Q ss_pred             cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc-------CccCcCHHH----HHHHH----HHcC
Q 028466           81 DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV-------DKRQVSIEE----GEAKA----RELN  145 (208)
Q Consensus        81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~-------~~~~~~~~~----~~~~~----~~~~  145 (208)
                      ..+..++ ++...++  .+-......+..   .+.|+++|.||.|+.       .-......+    ++.+.    .+.+
T Consensus       148 ~~~~~~~-lS~G~~~--kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g  221 (413)
T 1tq4_A          148 EYDFFII-ISATRFK--KNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG  221 (413)
T ss_dssp             GCSEEEE-EESSCCC--HHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCCeEE-eCCCCcc--HHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4465555 6664211  111112222222   358999999999974       111122222    23332    1222


Q ss_pred             ---CeEEEeecC--CCCCHHHHHHHHHHHcCCCc
Q 028466          146 ---VMFIETSAK--AGFNIKALFRKIAAALPGME  174 (208)
Q Consensus       146 ---~~~~~~S~~--~~~~v~~~~~~l~~~~~~~~  174 (208)
                         ..++.+|++  ++.|++++.+.|.+.+++.+
T Consensus       222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             CCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence               367889994  55579999999999987665

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.92  E-value=1e-09  Score=83.19  Aligned_cols=138  Identities=12%  Similarity=0.165  Sum_probs=72.3

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCcc-------ceeeeeeeEEEEEEC--CeEEEEEEEecCCchhhcc------
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-------ATIGIDFLSKTMYLE--DRTVRLQLWDTAGQERFRS------   73 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~------   73 (208)
                      .++++|+|++|+|||||+|.|.+...+....       ...+.......+...  +-...++++|++|......      
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            4789999999999999999998643321110       000000011111111  1112679999998432100      


Q ss_pred             chhh----------------------hhccCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466           74 LIPS----------------------YIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDKR  130 (208)
Q Consensus        74 ~~~~----------------------~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~  130 (208)
                      ....                      .+..+++.++++|.... .+... ...+..+.   .. .++|+|++|.|.....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-gL~~lD~~~l~~L~---~~-~~vI~Vi~K~D~lt~~  156 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-SLRPLDLEFMKHLS---KV-VNIIPVIAKADTMTLE  156 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-SCCHHHHHHHHHHH---TT-SEEEEEETTGGGSCHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-cCCHHHHHHHHHHH---hc-CcEEEEEeccccCCHH
Confidence            0000                      11235888889986521 11111 22223332   23 8899999999986543


Q ss_pred             Cc--CHHHHHHHHHHcCCeEEEe
Q 028466          131 QV--SIEEGEAKARELNVMFIET  151 (208)
Q Consensus       131 ~~--~~~~~~~~~~~~~~~~~~~  151 (208)
                      +.  ....+......+++.+|+.
T Consensus       157 e~~~~k~~i~~~l~~~~i~i~~~  179 (270)
T 3sop_A          157 EKSEFKQRVRKELEVNGIEFYPQ  179 (270)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSSC
T ss_pred             HHHHHHHHHHHHHHHcCccccCC
Confidence            22  2344555666778877654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.92  E-value=9e-11  Score=92.81  Aligned_cols=135  Identities=12%  Similarity=0.119  Sum_probs=75.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCC-------CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc----h--
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL----I--   75 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----~--   75 (208)
                      ..+++++|.+|+|||||+|+|++....       ....+..+  .....+.+..   .+.++||||.......    .  
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~  234 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTT--LDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQ  234 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCee--cceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHH
Confidence            468999999999999999999875311       11222222  2233333433   2789999996433211    1  


Q ss_pred             --hhh--hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEe
Q 028466           76 --PSY--IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIET  151 (208)
Q Consensus        76 --~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (208)
                        ..+  .+..+.++++++....-.+..+..    +......+.|+++++||.|.....+. ......+.+..+..+++.
T Consensus       235 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~  309 (368)
T 3h2y_A          235 SLKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPP  309 (368)
T ss_dssp             HHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSS
T ss_pred             HHHHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCC
Confidence              111  356788888888742100001000    11222356899999999998654332 333344445566655555


Q ss_pred             ec
Q 028466          152 SA  153 (208)
Q Consensus       152 S~  153 (208)
                      ++
T Consensus       310 ~~  311 (368)
T 3h2y_A          310 TP  311 (368)
T ss_dssp             CH
T ss_pred             ch
Confidence            54

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.90  E-value=1.1e-09  Score=86.65  Aligned_cols=97  Identities=22%  Similarity=0.270  Sum_probs=71.1

Q ss_pred             CchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHH----HHH
Q 028466           67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEA----KAR  142 (208)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~----~~~  142 (208)
                      .++.|......++..++++++|+|++++.+     .|...+.... .+.|+++|+||+|+.+.. ........    .+.
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence            477899999888899999999999998753     2333333332 268999999999997542 22333333    355


Q ss_pred             HcCC---eEEEeecCCCCCHHHHHHHHHHHc
Q 028466          143 ELNV---MFIETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       143 ~~~~---~~~~~S~~~~~~v~~~~~~l~~~~  170 (208)
                      ..+.   .++.+||+++.|++++++.|.+..
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            5666   789999999999999999998765

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.87  E-value=1.3e-09  Score=83.04  Aligned_cols=100  Identities=10%  Similarity=0.065  Sum_probs=69.1

Q ss_pred             EEecCCch-hhccchhhhhccCCEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHH
Q 028466           62 LWDTAGQE-RFRSLIPSYIRDSSVAVIVYDVASRQSFL--NTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGE  138 (208)
Q Consensus        62 i~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~  138 (208)
                      |...|||. .........+.++|+++.|+|+.+|.+..  .+..++        .++|.++|+||+|+.+...  .....
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~   72 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK   72 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence            45678876 45556677899999999999999886654  233332        3689999999999965211  12223


Q ss_pred             HHHHHcCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          139 AKARELNVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       139 ~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      .+..+.+++++.+|+.++.|++++++.+.+.+.
T Consensus        73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence            334445788999999999999999998887764

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.57  E-value=6e-08  Score=73.89  Aligned_cols=58  Identities=21%  Similarity=0.283  Sum_probs=36.3

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (208)
                      ..++++++|.+|+|||||+|+|.+.... ....+..|.+..  .+..+.   .+.++||||...
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~~  177 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGILW  177 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCCC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcCC
Confidence            4689999999999999999999987642 222333333332  233332   588999999643

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.52  E-value=4.4e-07  Score=72.91  Aligned_cols=86  Identities=15%  Similarity=0.067  Sum_probs=50.5

Q ss_pred             EEEEEEecCCchhhccch----h--hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC
Q 028466           58 VRLQLWDTAGQERFRSLI----P--SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ  131 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~  131 (208)
                      +.+.|+||+|........    .  ......|.+++|+|+.......   .....+...   -.+..+|+||.|....  
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~---~~i~gVIlTKlD~~~~--  254 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEA---TPIGSIIVTKLDGSAK--  254 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHS---CTTEEEEEECCSSCSS--
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhh---CCCeEEEEECCCCccc--
Confidence            578999999953322111    1  1233579999999997543222   222333322   1345677899997432  


Q ss_pred             cCHHHHHHHHHHcCCeEEEeec
Q 028466          132 VSIEEGEAKARELNVMFIETSA  153 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~S~  153 (208)
                        ...+.......++++..++.
T Consensus       255 --gG~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          255 --GGGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             --HHHHHHHHHTTCCCEEEEEC
T ss_pred             --ccHHHHHHHHHCCCEEEEEc
Confidence              33445555567888877775

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.51  E-value=4.6e-08  Score=73.75  Aligned_cols=58  Identities=22%  Similarity=0.291  Sum_probs=36.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (208)
                      ++++++|.+|+|||||+|+|.+...... .++.+.+.....+..+.   .+.+|||||....
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~~  157 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILYK  157 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCcccC
Confidence            5999999999999999999998765321 12222222222233332   5789999997643

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.44  E-value=1.7e-07  Score=75.49  Aligned_cols=83  Identities=16%  Similarity=0.065  Sum_probs=46.8

Q ss_pred             EEEEEEecCCchhhccchh----h--hhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-e-EEEEEeCCCCcCc
Q 028466           58 VRLQLWDTAGQERFRSLIP----S--YIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDV-I-IVLVGNKTDLVDK  129 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~----~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~-iivv~nK~D~~~~  129 (208)
                      +.+.|+||||.........    .  .+..+|.+++|+|+....   ........+.    ... | ..+|+||.|....
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~----~~~~~i~gvVlnK~D~~~~  253 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFK----EAVGEIGSIIVTKLDGSAK  253 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHH----TTSCSCEEEEEECSSSCST
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHh----hcccCCeEEEEeCCCCccc
Confidence            5689999999654221111    1  123689999999987542   2222222222    224 4 7788899997421


Q ss_pred             cCcCHHHHHHHHHHcCCeEEEe
Q 028466          130 RQVSIEEGEAKARELNVMFIET  151 (208)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~  151 (208)
                          ...+.......+.++..+
T Consensus       254 ----~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          254 ----GGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             ----THHHHHHHHHSSCCEEEE
T ss_pred             ----hHHHHHHHHHHCCCEEEe
Confidence                122334556666665544

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.43  E-value=6.3e-08  Score=72.97  Aligned_cols=94  Identities=15%  Similarity=0.058  Sum_probs=62.1

Q ss_pred             cCCchh-hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH
Q 028466           65 TAGQER-FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE  143 (208)
Q Consensus        65 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~  143 (208)
                      .|||-. ........+.++|+++.|+|+.+|.+.....  +. +.     ++|.++|+||+|+.+...  ......+...
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-ll-----~k~~iivlNK~DL~~~~~--~~~~~~~~~~   73 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-FS-----RKETIILLNKVDIADEKT--TKKWVEFFKK   73 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-CT-----TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-hc-----CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence            366542 3345566789999999999999876553210  11 11     589999999999975321  1222334445


Q ss_pred             cCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466          144 LNVMFIETSAKAGFNIKALFRKIAAA  169 (208)
Q Consensus       144 ~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (208)
                      .+.++ .+|+.++.|++++++.+...
T Consensus        74 ~g~~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           74 QGKRV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred             cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence            57788 99999999999998887654

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.32  E-value=4.7e-07  Score=75.37  Aligned_cols=64  Identities=16%  Similarity=0.057  Sum_probs=38.8

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCcccee-eeeeeEEEE--EE-CCeEEEEEEEecCCchh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI-GIDFLSKTM--YL-EDRTVRLQLWDTAGQER   70 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~-~~~~~~~~~--~~-~~~~~~~~i~D~~G~~~   70 (208)
                      .+.++|+|+|.+|+|||||+|+|++....-....+. +.+.....+  .. ......+.++||||...
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            356889999999999999999999876421111111 111111111  11 11224689999999654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.26  E-value=3.6e-07  Score=73.39  Aligned_cols=89  Identities=12%  Similarity=0.058  Sum_probs=52.3

Q ss_pred             EEEEEEecCCchh--hcc----chhh--hhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc
Q 028466           58 VRLQLWDTAGQER--FRS----LIPS--YIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK  129 (208)
Q Consensus        58 ~~~~i~D~~G~~~--~~~----~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~  129 (208)
                      +.+.|+||||...  ...    ....  .....|.+++|+|+.......   .....+....   .+..||+||.|... 
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~~---~~~gVIlTKlD~~a-  252 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQAS---PIGSVIITKMDGTA-  252 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHHC---SSEEEEEECGGGCS-
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhccc---CCcEEEEecccccc-
Confidence            5688999999543  111    1111  122568999999997543222   2223333222   34577789999742 


Q ss_pred             cCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466          130 RQVSIEEGEAKARELNVMFIETSAKAGFN  158 (208)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (208)
                         ....+.......++++..++.  |++
T Consensus       253 ---~~G~als~~~~~g~Pi~fig~--Ge~  276 (433)
T 3kl4_A          253 ---KGGGALSAVVATGATIKFIGT--GEK  276 (433)
T ss_dssp             ---CHHHHHHHHHHHTCEEEEEEC--CSS
T ss_pred             ---cchHHHHHHHHHCCCEEEEEC--CCC
Confidence               234455566667888877775  544

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.15  E-value=8.7e-07  Score=68.10  Aligned_cols=91  Identities=18%  Similarity=0.208  Sum_probs=60.1

Q ss_pred             ccchhhhhccCCEEEEEEeCCChhhHH-hHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC--cCHHHHHHHHHHcCCeE
Q 028466           72 RSLIPSYIRDSSVAVIVYDVASRQSFL-NTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ--VSIEEGEAKARELNVMF  148 (208)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~  148 (208)
                      ..+.+..+.++|.+++|+|+.+|..-. .+..++..+.   ..++|.++|+||+|+.+..+  .............+.++
T Consensus        77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v  153 (307)
T 1t9h_A           77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV  153 (307)
T ss_dssp             CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred             hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence            344555788999999999998764333 3444433322   23588899999999975432  01233444445568899


Q ss_pred             EEeecCCCCCHHHHHHH
Q 028466          149 IETSAKAGFNIKALFRK  165 (208)
Q Consensus       149 ~~~S~~~~~~v~~~~~~  165 (208)
                      +.+|+.++.|+++++..
T Consensus       154 ~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          154 YLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             EECCHHHHTTCTTTGGG
T ss_pred             EEEecCCCCCHHHHHhh
Confidence            99999988887765543

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.06  E-value=7.9e-06  Score=62.59  Aligned_cols=90  Identities=13%  Similarity=0.072  Sum_probs=54.2

Q ss_pred             EEEEEEecCCchh--hcc-chh-----hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcC
Q 028466           58 VRLQLWDTAGQER--FRS-LIP-----SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVD  128 (208)
Q Consensus        58 ~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~  128 (208)
                      +.+.|+||||...  ... ...     .....+|.+++|.|+....   ........+..    ..+ ..+|.||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence            5689999999765  221 111     1345789999999986432   22222222322    244 667789999742


Q ss_pred             ccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466          129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIK  160 (208)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (208)
                          ....+.......++++..++  .|++++
T Consensus       254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~  279 (297)
T 1j8m_F          254 ----KGGGALSAVAATGATIKFIG--TGEKID  279 (297)
T ss_dssp             ----THHHHHHHHHTTTCCEEEEE--CSSSTT
T ss_pred             ----chHHHHHHHHHHCcCEEEEe--CCCChh
Confidence                23345566777788877766  455554

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.02  E-value=9.7e-06  Score=68.14  Aligned_cols=25  Identities=28%  Similarity=0.421  Sum_probs=21.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      ..++|+|++|+|||||++.+.+-..
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~~   70 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVAL   70 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC-
T ss_pred             CeEEEECCCCChHHHHHHHHhCCCC
Confidence            3599999999999999999987643

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.88  E-value=4.2e-05  Score=59.36  Aligned_cols=90  Identities=12%  Similarity=0.085  Sum_probs=50.5

Q ss_pred             EEEEEecCCchhhccchhh------hhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc
Q 028466           59 RLQLWDTAGQERFRSLIPS------YIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV  132 (208)
Q Consensus        59 ~~~i~D~~G~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~  132 (208)
                      .+.++|++|..........      ..-..|-.+++.|+....   .+......+....   ..-++++||.|...    
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a----  282 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA----  282 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS----
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc----
Confidence            4667999996432221111      122468899999986432   2233333333222   22356679999622    


Q ss_pred             CHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466          133 SIEEGEAKARELNVMFIETSAKAGFNIK  160 (208)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (208)
                      ..-.+.......+.++..++  +|++++
T Consensus       283 ~~G~~l~~~~~~~~pi~~i~--~Ge~v~  308 (328)
T 3e70_C          283 RGGAALSISYVIDAPILFVG--VGQGYD  308 (328)
T ss_dssp             CCHHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred             chhHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            13345566677788877777  555543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.82  E-value=7.6e-05  Score=58.48  Aligned_cols=85  Identities=19%  Similarity=0.172  Sum_probs=54.6

Q ss_pred             hhccCCEEEEEEeCCChhhH-HhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC-HHHHHHHHHHcCCeEEEeecCC
Q 028466           78 YIRDSSVAVIVYDVASRQSF-LNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS-IEEGEAKARELNVMFIETSAKA  155 (208)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~S~~~  155 (208)
                      ...++|.+++|... +|..- ..+..++......   ++|.++|+||+|+.+..... ...........+++++.+|+.+
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            36789999988665 45432 2344444333222   47778999999997542210 1122333345678999999999


Q ss_pred             CCCHHHHHHHH
Q 028466          156 GFNIKALFRKI  166 (208)
Q Consensus       156 ~~~v~~~~~~l  166 (208)
                      +.|++++...+
T Consensus       203 ~~gl~~L~~~~  213 (358)
T 2rcn_A          203 QDGLKPLEEAL  213 (358)
T ss_dssp             TBTHHHHHHHH
T ss_pred             CcCHHHHHHhc
Confidence            99999887654

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.82  E-value=1.8e-06  Score=70.36  Aligned_cols=110  Identities=12%  Similarity=0.051  Sum_probs=60.5

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh--ccch--------h
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--RSLI--------P   76 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~--------~   76 (208)
                      ...+.|+++|.+|+||||+.++|...... ....+.............+......+||..|.+.+  ...+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34678999999999999999998743210 01111111100000000011123457888887432  2222        4


Q ss_pred             hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEE
Q 028466           77 SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVG  121 (208)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~  121 (208)
                      .++...++.++|+|+++. ..+....|+..+...   ..+++++-
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~  156 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVE  156 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEE
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEE
Confidence            456667888999999976 455556666655543   24444443

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.74  E-value=3.8e-05  Score=61.90  Aligned_cols=24  Identities=13%  Similarity=0.162  Sum_probs=21.1

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      +-.-|.|+|++++|||+|+|+|++
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhh
Confidence            456688999999999999999985

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.40  E-value=8.7e-05  Score=52.40  Aligned_cols=23  Identities=26%  Similarity=0.632  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .+++|+|++|+|||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999988654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.32  E-value=0.00014  Score=52.09  Aligned_cols=28  Identities=21%  Similarity=0.407  Sum_probs=22.8

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      +.++.--|+|+|++|+|||||++.|...
T Consensus        15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           15 YFQGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            3455667899999999999999999854

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.29  E-value=9.1e-05  Score=56.86  Aligned_cols=25  Identities=28%  Similarity=0.454  Sum_probs=20.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .-.++|+|++|+|||||+|.|.+..
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CCEEEEECCCCCCHHHHHHHhcccc
Confidence            3578999999999999999998654

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.27  E-value=0.00017  Score=50.83  Aligned_cols=24  Identities=29%  Similarity=0.551  Sum_probs=20.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .--++|+|++|+|||||++.|.+.
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            346899999999999999998754

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.25  E-value=0.00015  Score=52.05  Aligned_cols=22  Identities=18%  Similarity=0.492  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      -.++|+|++|+|||||++.+.+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999998875

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.21  E-value=0.00078  Score=54.23  Aligned_cols=63  Identities=17%  Similarity=0.083  Sum_probs=36.4

Q ss_pred             EEEEEEecCCchhhccchh------hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCc
Q 028466           58 VRLQLWDTAGQERFRSLIP------SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLV  127 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~  127 (208)
                      +.+.|+||||.........      ......|.+++|+|+......   ......+..    ..+ .-+|+||.|..
T Consensus       184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~  253 (433)
T 2xxa_A          184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGD  253 (433)
T ss_dssp             CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSS
T ss_pred             CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCC
Confidence            5799999999654322111      124478999999999754222   222222222    133 24567999974

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.21  E-value=0.00019  Score=51.74  Aligned_cols=25  Identities=16%  Similarity=0.280  Sum_probs=21.1

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .+...|+|+|++|+|||||++.|.+
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            4557899999999999999998765

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.17  E-value=0.00028  Score=49.86  Aligned_cols=29  Identities=17%  Similarity=0.280  Sum_probs=23.3

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      +..++...|+|+|.+|+||||+.+.|...
T Consensus         5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            5 MEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            44455678999999999999999988654

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.12  E-value=0.00024  Score=50.88  Aligned_cols=23  Identities=17%  Similarity=0.317  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      --++|+|++|+|||||++.|.+.
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            46899999999999999998764

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.11  E-value=0.00025  Score=51.76  Aligned_cols=25  Identities=16%  Similarity=0.274  Sum_probs=21.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .--++|+|++|+|||||++.+.+..
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccC
Confidence            3468899999999999999987643

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.11  E-value=0.00095  Score=51.14  Aligned_cols=24  Identities=29%  Similarity=0.603  Sum_probs=20.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .-.++++|++|+|||||+|.+. ..
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            3468999999999999999998 53

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.11  E-value=0.0003  Score=50.45  Aligned_cols=26  Identities=27%  Similarity=0.413  Sum_probs=22.1

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      +...|+|+|++|+||||+++.|.+..
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            44679999999999999999987654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.10  E-value=0.00025  Score=49.55  Aligned_cols=21  Identities=19%  Similarity=0.477  Sum_probs=18.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~   30 (208)
                      =-++++|++|+|||||++.+.
T Consensus        10 ei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           10 SLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHc
Confidence            357899999999999999654

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.09  E-value=0.00026  Score=51.06  Aligned_cols=23  Identities=22%  Similarity=0.379  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      =-++|+|++|+|||||++.+.+.
T Consensus        21 ei~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           21 RVVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35789999999999999988764

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.08  E-value=0.00027  Score=51.46  Aligned_cols=25  Identities=32%  Similarity=0.594  Sum_probs=21.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .-.++|+|++|+|||||++.+.+..
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3468999999999999999987643

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.06  E-value=0.00038  Score=50.24  Aligned_cols=25  Identities=12%  Similarity=0.227  Sum_probs=21.5

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .+...|+|+|++|+|||||++.|.+
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999998764

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.05  E-value=0.00042  Score=49.04  Aligned_cols=24  Identities=21%  Similarity=0.259  Sum_probs=21.2

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .-.++|+|++|+|||||++.|.+.
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            456899999999999999999765

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.04  E-value=0.00034  Score=49.66  Aligned_cols=21  Identities=19%  Similarity=0.586  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q 028466           12 LVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~   32 (208)
                      |+|+||+|+||+||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999754

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.03  E-value=0.00044  Score=48.56  Aligned_cols=24  Identities=21%  Similarity=0.371  Sum_probs=20.8

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      ++...|+|+|.+|+||||+.+.|.
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHH
Confidence            445679999999999999999886

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.01  E-value=0.00055  Score=47.79  Aligned_cols=25  Identities=16%  Similarity=0.260  Sum_probs=21.1

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      ++...|+|+|++|+||||+.+.|.+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3456799999999999999998754

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.98  E-value=0.0004  Score=51.26  Aligned_cols=23  Identities=13%  Similarity=0.241  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57899999999999999887653

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.98  E-value=0.00046  Score=49.45  Aligned_cols=24  Identities=25%  Similarity=0.319  Sum_probs=20.5

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      +.-.|+|+|++|+|||||++.|.+
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999998864

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.96  E-value=0.00043  Score=49.98  Aligned_cols=25  Identities=24%  Similarity=0.357  Sum_probs=21.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .--|+|+|++|+|||||++.|....
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhC
Confidence            3458899999999999999998653

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.96  E-value=0.00047  Score=48.68  Aligned_cols=22  Identities=27%  Similarity=0.178  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998753

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.92  E-value=0.00053  Score=49.43  Aligned_cols=24  Identities=17%  Similarity=0.230  Sum_probs=21.0

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      +...|+|.|.+||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998863

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.92  E-value=0.00046  Score=50.52  Aligned_cols=23  Identities=13%  Similarity=0.238  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999887653

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.89  E-value=0.00054  Score=49.21  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .-|+|+|++|||||||.+.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999998643

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.89  E-value=0.00056  Score=53.56  Aligned_cols=25  Identities=24%  Similarity=0.382  Sum_probs=21.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      -.++|+|++|+|||||+|.|.+...
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CEEEEECCCCccHHHHHHHHhcccc
Confidence            3689999999999999999987654

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.88  E-value=0.00055  Score=47.29  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      =.++++|+.|+|||||++.+.+..
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            458899999999999999987654

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.88  E-value=0.00065  Score=48.05  Aligned_cols=22  Identities=23%  Similarity=0.392  Sum_probs=19.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~   30 (208)
                      ...|+|.|.+||||||+.+.|.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~   24 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIV   24 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            4789999999999999999875

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.87  E-value=0.00073  Score=48.51  Aligned_cols=25  Identities=24%  Similarity=0.166  Sum_probs=21.4

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      |+...|+|.|.+||||||+.+.|..
T Consensus         2 m~~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            2 KKGVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            3457899999999999999998864

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.86  E-value=0.00059  Score=47.46  Aligned_cols=22  Identities=18%  Similarity=0.369  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      ..|+|+|++|+||||+.+.|.+
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998865

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.86  E-value=0.00061  Score=49.52  Aligned_cols=23  Identities=22%  Similarity=0.367  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999887653

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.86  E-value=0.0006  Score=50.46  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999887653

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.85  E-value=0.00064  Score=50.21  Aligned_cols=22  Identities=18%  Similarity=0.507  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .++|+|+.|+|||||++.+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999988765

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.85  E-value=0.00062  Score=49.75  Aligned_cols=28  Identities=25%  Similarity=0.488  Sum_probs=19.7

Q ss_pred             CCCCCCCcceeEEEEcCCCCcHHHHHHHhh
Q 028466            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      |..+..+  ..|+|.|++||||||+.+.|.
T Consensus         1 m~~~~~~--~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            1 MGASARL--LRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             ------C--CEEEEEECTTSSHHHHHHHHH
T ss_pred             CCccccC--cEEEEECCCCCCHHHHHHHHH
Confidence            4444333  679999999999999999875

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.84  E-value=0.0006  Score=51.14  Aligned_cols=23  Identities=13%  Similarity=0.377  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999887653

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.84  E-value=0.00067  Score=47.01  Aligned_cols=20  Identities=15%  Similarity=0.250  Sum_probs=18.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHh
Q 028466           10 YKLVFLGDQSVGKTSIITRF   29 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l   29 (208)
                      .-|+|+|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.83  E-value=0.00079  Score=47.02  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      ..|+|.|++|+||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.83  E-value=0.012  Score=47.39  Aligned_cols=96  Identities=19%  Similarity=0.220  Sum_probs=50.8

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhh---c---------------CCCCC---CccceeeeeeeEEEE--EE-CCeEEEEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFM---Y---------------DKFDN---TYQATIGIDFLSKTM--YL-EDRTVRLQLW   63 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~---~---------------~~~~~---~~~~~~~~~~~~~~~--~~-~~~~~~~~i~   63 (208)
                      +-.-|.|+|..++|||+|+|.|+   +               ..|..   ...-|.++-.-...+  .. ++....+.++
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll  145 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM  145 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred             ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence            44566799999999999999654   1               12211   111233332222111  11 4556789999


Q ss_pred             ecCCchhhccch-------hhhhccCCEEEEEE-eCCChhhHHhHHHH
Q 028466           64 DTAGQERFRSLI-------PSYIRDSSVAVIVY-DVASRQSFLNTTKW  103 (208)
Q Consensus        64 D~~G~~~~~~~~-------~~~~~~~d~~i~v~-d~~~~~s~~~~~~~  103 (208)
                      ||.|........       ....--++.+|+=. ..-+...++.+..+
T Consensus       146 DTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~~~~i~~~~L~~L~~~  193 (457)
T 4ido_A          146 DTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLF  193 (457)
T ss_dssp             EECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEEESSCCHHHHHHHHHH
T ss_pred             eccCCCCcccCccccHHHHHHHHHHhhheeecccccCCHHHHHHHHHH
Confidence            999965433211       11122356666633 33344555555443

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.83  E-value=0.00064  Score=51.38  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999887653

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.81  E-value=0.00066  Score=48.35  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .++|+|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5899999999999999987653

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.81  E-value=0.00096  Score=47.08  Aligned_cols=23  Identities=17%  Similarity=0.250  Sum_probs=20.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      ...|+|.|.+||||||+.+.|..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998853

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.81  E-value=0.00074  Score=50.06  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      =.++|+|+.|+|||||++.+.+-.
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           29 SIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999887653

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.80  E-value=0.00067  Score=50.73  Aligned_cols=23  Identities=17%  Similarity=0.241  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999887654

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.80  E-value=0.00074  Score=50.19  Aligned_cols=23  Identities=13%  Similarity=0.161  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999887653

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.80  E-value=0.00067  Score=47.98  Aligned_cols=21  Identities=24%  Similarity=0.401  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      -++|+|++|+|||||++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999999975

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.78  E-value=0.00091  Score=47.06  Aligned_cols=23  Identities=26%  Similarity=0.494  Sum_probs=20.4

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      +...|+|+|++||||||+.+.|.
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34689999999999999999886

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.78  E-value=0.00072  Score=50.73  Aligned_cols=23  Identities=17%  Similarity=0.336  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            57899999999999999887653

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.78  E-value=0.00081  Score=49.37  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999887653

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.78  E-value=0.00077  Score=48.74  Aligned_cols=21  Identities=19%  Similarity=0.428  Sum_probs=19.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~   30 (208)
                      ++|+|+|++||||||+.+.|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            379999999999999999885

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.77  E-value=0.00073  Score=49.99  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999887653

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.76  E-value=0.001  Score=49.96  Aligned_cols=23  Identities=13%  Similarity=0.290  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999887654

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.76  E-value=0.00083  Score=46.54  Aligned_cols=21  Identities=10%  Similarity=0.240  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998863

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.76  E-value=0.00078  Score=50.36  Aligned_cols=23  Identities=17%  Similarity=0.198  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999887653

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.76  E-value=0.00081  Score=48.64  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=19.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~   30 (208)
                      ++|+|+|++||||||+.+.|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIV   21 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            379999999999999999885

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.75  E-value=0.00085  Score=49.66  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=20.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~   30 (208)
                      ...|+|+|++|+|||||++.|.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999987

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.75  E-value=0.00079  Score=50.10  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999887653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.74  E-value=0.00094  Score=51.12  Aligned_cols=25  Identities=20%  Similarity=0.137  Sum_probs=21.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      -.++++|++|+|||||+|.+.+...
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             CeEEEECCCCCcHHHHHHHhccccc
Confidence            4578999999999999999986544

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.74  E-value=0.001  Score=46.47  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      ..|+|.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999876

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.74  E-value=0.00081  Score=50.07  Aligned_cols=22  Identities=18%  Similarity=0.292  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .++|+|+.|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999998875

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.74  E-value=0.00087  Score=50.21  Aligned_cols=22  Identities=18%  Similarity=0.279  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .++|+|+.|+|||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5889999999999999988765

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.73  E-value=0.00085  Score=47.10  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      ..++|+|++|+|||||+++|...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            35789999999999999999854

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.72  E-value=0.00072  Score=48.90  Aligned_cols=22  Identities=23%  Similarity=0.164  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .++|+|+.|+|||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998865

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.72  E-value=0.00083  Score=51.46  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=20.5

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .=.++|+|++|+|||||++.|.+-
T Consensus       126 Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          126 KNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhhh
Confidence            346899999999999999988743

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.72  E-value=0.00092  Score=50.61  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999887653

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.72  E-value=0.00079  Score=50.46  Aligned_cols=22  Identities=18%  Similarity=0.312  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      =.++|+|++|+|||||++.+.+
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHH
Confidence            3689999999999999998875

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.71  E-value=0.00088  Score=50.40  Aligned_cols=22  Identities=14%  Similarity=0.267  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .++|+|+.|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999998875

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.71  E-value=0.00092  Score=50.38  Aligned_cols=23  Identities=13%  Similarity=0.203  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999887653

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.71  E-value=0.0012  Score=47.15  Aligned_cols=25  Identities=16%  Similarity=0.327  Sum_probs=21.5

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .+.+.|+|+|.+|+||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4457899999999999999998863

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.70  E-value=0.001  Score=48.44  Aligned_cols=22  Identities=14%  Similarity=0.172  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      ..|+|+|++|+||||+.+.|..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998764

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.67  E-value=0.00095  Score=47.77  Aligned_cols=22  Identities=18%  Similarity=0.366  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .+|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999998875

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.67  E-value=0.00096  Score=49.75  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999887654

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.67  E-value=0.00096  Score=50.14  Aligned_cols=23  Identities=17%  Similarity=0.225  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999887653

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.64  E-value=0.0014  Score=50.45  Aligned_cols=26  Identities=15%  Similarity=0.165  Sum_probs=22.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .+..-|+|+|++|+|||||++.|.+-
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhh
Confidence            45678999999999999999988653

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.64  E-value=0.0013  Score=46.48  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=20.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      ...|+|+|.+|+||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36789999999999999998864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.63  E-value=0.0017  Score=47.18  Aligned_cols=24  Identities=33%  Similarity=0.500  Sum_probs=18.9

Q ss_pred             CcceeE-EEEcCCCCcHHHHHHHhh
Q 028466            7 LAKYKL-VFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         7 ~~~~~i-~vvG~~~~GKStli~~l~   30 (208)
                      +++.|| +|+|+|||||+|....|.
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~   50 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLV   50 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHH
Confidence            444555 567999999999998876

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.62  E-value=0.0012  Score=49.53  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999988764

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.62  E-value=0.0018  Score=46.20  Aligned_cols=23  Identities=17%  Similarity=0.319  Sum_probs=19.8

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      +...|+|.|.+||||||+.+.|.
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~   36 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLV   36 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34578899999999999999886

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.61  E-value=0.00066  Score=49.73  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=15.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHhh-cC
Q 028466           10 YKLVFLGDQSVGKTSIITRFM-YD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~-~~   32 (208)
                      --++|+|++|+|||||++.|. +.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            468899999999999999998 54

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.61  E-value=0.0012  Score=46.06  Aligned_cols=20  Identities=25%  Similarity=0.544  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCcHHHHHHHhh
Q 028466           11 KLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~   30 (208)
                      +|+|+|++|+||||+.+.|.
T Consensus         6 ~i~i~G~~GsGKsTla~~La   25 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALA   25 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            69999999999999999875

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.61  E-value=0.0017  Score=46.59  Aligned_cols=25  Identities=16%  Similarity=0.271  Sum_probs=21.5

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      +...|+|+|++|+||||+.+.|.+.
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999988754

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.61  E-value=0.0011  Score=47.36  Aligned_cols=22  Identities=23%  Similarity=0.267  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      ..|+|+|++|+||||+.+.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.60  E-value=0.00092  Score=46.91  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .-.++++|++|+|||||++.+.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999988643

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.60  E-value=0.0015  Score=46.91  Aligned_cols=24  Identities=21%  Similarity=0.192  Sum_probs=20.9

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      +...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            357899999999999999998863

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.60  E-value=0.0015  Score=48.40  Aligned_cols=23  Identities=22%  Similarity=0.367  Sum_probs=20.9

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      +.++|+|.|++||||||+.+.|.
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~   50 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLK   50 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999886

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.60  E-value=0.0014  Score=46.99  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      +.|+|+|++|+||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999875

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.59  E-value=0.0013  Score=46.99  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~   30 (208)
                      -.|+|+|++||||||+.+.|.
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La   46 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFA   46 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHH
Confidence            478999999999999999886

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.59  E-value=0.0013  Score=46.89  Aligned_cols=21  Identities=24%  Similarity=0.449  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999998864

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.59  E-value=0.0015  Score=48.39  Aligned_cols=24  Identities=17%  Similarity=0.364  Sum_probs=21.1

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      +...|.|+|+.|+|||||++.|.+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999998865

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.59  E-value=0.00058  Score=47.83  Aligned_cols=22  Identities=41%  Similarity=0.558  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .++|+|++|+|||||++.+.+-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999988754

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.57  E-value=0.0016  Score=46.53  Aligned_cols=24  Identities=13%  Similarity=0.131  Sum_probs=20.5

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      +...|+|+|++|+||||+.+.|.+
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999998764

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.57  E-value=0.00091  Score=46.90  Aligned_cols=23  Identities=22%  Similarity=0.154  Sum_probs=15.8

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      +...|+|.|.+||||||+.+.|.
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La   26 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLH   26 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34679999999999999999885

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.56  E-value=0.0015  Score=46.55  Aligned_cols=24  Identities=29%  Similarity=0.296  Sum_probs=21.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      ...|+|.|.+||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            467999999999999999988754

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.55  E-value=0.0014  Score=46.16  Aligned_cols=21  Identities=19%  Similarity=0.316  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      .|+|.|.+||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998853

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.55  E-value=0.0014  Score=47.25  Aligned_cols=21  Identities=38%  Similarity=0.570  Sum_probs=18.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~   30 (208)
                      ++|+|+|+|||||+|...+|.
T Consensus         1 M~Iil~GpPGsGKgTqa~~La   21 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLA   21 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999876

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.55  E-value=0.0018  Score=49.15  Aligned_cols=25  Identities=20%  Similarity=0.258  Sum_probs=21.4

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .+..-|+|.|++|+||||+.+.|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457789999999999999999864

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.54  E-value=0.0012  Score=48.04  Aligned_cols=22  Identities=18%  Similarity=0.215  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      -++|+|++|+|||||++.+.+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999864

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.53  E-value=0.0021  Score=48.96  Aligned_cols=25  Identities=20%  Similarity=0.239  Sum_probs=21.3

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhh
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      ..+...|+|+|++|+|||||.+.|.
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHH
Confidence            3456889999999999999998765

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.53  E-value=0.00095  Score=51.19  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      =.++|+|++|+|||||++.+.+-
T Consensus        81 e~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           81 QTLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             CEEEEESSSCHHHHHHHHHHTTS
T ss_pred             CEEEEECCCCchHHHHHHHHHcC
Confidence            36899999999999999988754

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.53  E-value=0.0022  Score=45.13  Aligned_cols=25  Identities=28%  Similarity=0.238  Sum_probs=21.5

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      ++...|+|+|.+|+||||+.+.|..
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            4567899999999999999998753

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.51  E-value=0.0017  Score=50.41  Aligned_cols=28  Identities=21%  Similarity=0.434  Sum_probs=19.6

Q ss_pred             CCCCCCCcceeEEEEcCCCCcHHHHHHHhh
Q 028466            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      |++|. |+ .-|+|+|++|||||||...|.
T Consensus         1 ~~~m~-m~-~lI~I~GptgSGKTtla~~La   28 (340)
T 3d3q_A            1 MTEMT-KP-FLIVIVGPTASGKTELSIEVA   28 (340)
T ss_dssp             ------CC-EEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCC-CC-ceEEEECCCcCcHHHHHHHHH
Confidence            56654 33 568999999999999999875

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.50  E-value=0.0014  Score=47.33  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998753

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.50  E-value=0.0089  Score=40.22  Aligned_cols=23  Identities=9%  Similarity=0.164  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      ..|++.|++|+|||++.+.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            46999999999999999977543

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.49  E-value=0.0018  Score=46.08  Aligned_cols=26  Identities=12%  Similarity=0.078  Sum_probs=22.4

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .+...|+|+|++||||||+.+.|...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            34578999999999999999988754

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.49  E-value=0.0024  Score=48.37  Aligned_cols=24  Identities=29%  Similarity=0.380  Sum_probs=21.3

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      .+.+.|+|.|.+||||||+.+.|.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999999886

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.49  E-value=0.0017  Score=47.09  Aligned_cols=22  Identities=18%  Similarity=0.428  Sum_probs=19.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~   30 (208)
                      .+.|+|+|.+||||||+.+.|.
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La   25 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQ   25 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999875

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.49  E-value=0.0015  Score=49.75  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57899999999999999887653

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.47  E-value=0.0017  Score=50.88  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      -++|+|++|+|||||++.+.+-..
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCC
Confidence            478999999999999998886543

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.45  E-value=0.0018  Score=45.52  Aligned_cols=21  Identities=24%  Similarity=0.396  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~   30 (208)
                      ..|+++|++||||||+.+.|.
T Consensus         6 ~~i~l~G~~GsGKst~a~~La   26 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLA   26 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999885

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.45  E-value=0.0016  Score=51.02  Aligned_cols=24  Identities=25%  Similarity=0.239  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      -++|+|++|+|||||++.+.+-..
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~~   66 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLER   66 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            478999999999999998876543

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.45  E-value=0.0019  Score=45.78  Aligned_cols=22  Identities=14%  Similarity=0.300  Sum_probs=19.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~   30 (208)
                      ...|+|+|++||||||+.+.|.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La   30 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIV   30 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3679999999999999999875

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.43  E-value=0.0019  Score=44.55  Aligned_cols=21  Identities=14%  Similarity=0.301  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998864

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.42  E-value=0.0017  Score=50.92  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|++|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            47899999999999999887654

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.41  E-value=0.0017  Score=51.21  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      -++|+|++|+|||||++.+.+-..
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEcCCCchHHHHHHHHHcCCC
Confidence            478999999999999998876543

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.41  E-value=0.0017  Score=50.91  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|++|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            47899999999999999887654

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.40  E-value=0.0025  Score=49.19  Aligned_cols=24  Identities=21%  Similarity=0.297  Sum_probs=20.8

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      .+.+-|.|+|++|||||||++.|.
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~  113 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLK  113 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345789999999999999999875

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.40  E-value=0.0021  Score=50.56  Aligned_cols=24  Identities=21%  Similarity=0.414  Sum_probs=21.4

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .-+++|+|++|+|||||++.|.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999988764

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.39  E-value=0.0022  Score=47.60  Aligned_cols=25  Identities=16%  Similarity=0.295  Sum_probs=21.1

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .+.+.|+|.|++||||||+.+.|..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999998754

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.39  E-value=0.0018  Score=50.77  Aligned_cols=23  Identities=17%  Similarity=0.245  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      -++|+|++|+|||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            47899999999999999887654

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.38  E-value=0.0022  Score=47.67  Aligned_cols=22  Identities=14%  Similarity=0.199  Sum_probs=20.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~   30 (208)
                      ...|+|+|++|+||||+.+.|.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4679999999999999999886

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.37  E-value=0.0027  Score=45.45  Aligned_cols=24  Identities=21%  Similarity=0.245  Sum_probs=20.8

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      +...|+|+|++|+|||||++.|.+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457799999999999999998763

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.37  E-value=0.0017  Score=50.83  Aligned_cols=21  Identities=14%  Similarity=0.354  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      .++|+|++|+|||||++.+.+
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999998864

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.37  E-value=0.0019  Score=50.87  Aligned_cols=23  Identities=30%  Similarity=0.352  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|++|+|||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999999887653

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.36  E-value=0.0026  Score=45.99  Aligned_cols=23  Identities=22%  Similarity=0.489  Sum_probs=20.5

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .+.|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998864

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.36  E-value=0.0023  Score=49.06  Aligned_cols=25  Identities=20%  Similarity=0.292  Sum_probs=21.6

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .+...|+|+|++|+|||||++.|.+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999998875

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.36  E-value=0.0019  Score=50.92  Aligned_cols=24  Identities=21%  Similarity=0.263  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      -++|+|++|+|||||++.+.+-..
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCC
Confidence            478999999999999998876543

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.35  E-value=0.0023  Score=50.29  Aligned_cols=24  Identities=21%  Similarity=0.437  Sum_probs=21.3

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      .+.+||+|+|.+|||||||++++.
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~   54 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMR   54 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHHH
Confidence            457999999999999999999853

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.34  E-value=0.0023  Score=44.63  Aligned_cols=22  Identities=18%  Similarity=0.386  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      ..+.|+|.+|+|||||+.+|..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999999874

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.34  E-value=0.0015  Score=44.56  Aligned_cols=23  Identities=13%  Similarity=0.401  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      -.++|+|++|+|||+|++.+.+.
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999988753

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.33  E-value=0.0022  Score=46.67  Aligned_cols=20  Identities=15%  Similarity=0.255  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCcHHHHHHHhh
Q 028466           11 KLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~   30 (208)
                      .|+|.|++||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La   21 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVK   21 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999875

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.33  E-value=0.0019  Score=49.46  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=19.5

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~   30 (208)
                      .-.++|+|++|+||||+++.+.
T Consensus       102 g~vi~lvG~nGsGKTTll~~La  123 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLG  123 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHH
Confidence            4578899999999999999875

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.32  E-value=0.0021  Score=46.69  Aligned_cols=21  Identities=19%  Similarity=0.259  Sum_probs=19.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~   30 (208)
                      ..|+|+|++||||||+.+.|.
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La   26 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIK   26 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999999875

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.31  E-value=0.0021  Score=49.91  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      -.++|+|++|+|||||++.+.+--
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999988653

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.31  E-value=0.0021  Score=48.54  Aligned_cols=21  Identities=19%  Similarity=0.365  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q 028466           12 LVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~   32 (208)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999998753

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.30  E-value=0.003  Score=49.64  Aligned_cols=25  Identities=24%  Similarity=0.472  Sum_probs=21.4

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .-.++|+|++|+|||||++.+.+--
T Consensus       175 G~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          175 ERVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcC
Confidence            3478999999999999999987643

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.29  E-value=0.003  Score=46.20  Aligned_cols=26  Identities=19%  Similarity=0.364  Sum_probs=22.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .+..-|+|.|+.|+||||+++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34567999999999999999988764

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.27  E-value=0.0016  Score=50.91  Aligned_cols=23  Identities=26%  Similarity=0.274  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|++|+|||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            47899999999999999887654

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.25  E-value=0.0023  Score=48.99  Aligned_cols=23  Identities=17%  Similarity=0.313  Sum_probs=19.9

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      +.--++++|+.|+||||+++.+.
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~La  121 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLA  121 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHH
Confidence            34578899999999999999876

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.25  E-value=0.0032  Score=44.00  Aligned_cols=24  Identities=17%  Similarity=0.173  Sum_probs=20.7

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      +...|+|+|.+|+||||+.+.|..
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999998865

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.24  E-value=0.0028  Score=46.63  Aligned_cols=23  Identities=17%  Similarity=0.261  Sum_probs=20.1

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      +.+.|+|.|++|+||||+.+.|.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999875

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.24  E-value=0.0027  Score=44.78  Aligned_cols=21  Identities=24%  Similarity=0.336  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.24  E-value=0.0034  Score=48.40  Aligned_cols=22  Identities=18%  Similarity=0.356  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999998763

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.23  E-value=0.0027  Score=46.03  Aligned_cols=22  Identities=23%  Similarity=0.345  Sum_probs=19.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~   30 (208)
                      .+.|+|+|.+||||||+.+.|.
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La   26 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIK   26 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999875

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.22  E-value=0.0025  Score=47.27  Aligned_cols=21  Identities=24%  Similarity=0.450  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q 028466           12 LVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~   32 (208)
                      ++|+|++|+|||||++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988753

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.22  E-value=0.0025  Score=50.29  Aligned_cols=22  Identities=18%  Similarity=0.312  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      =.++|+|++|+|||||++.+.+
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999998875

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.22  E-value=0.0025  Score=47.44  Aligned_cols=25  Identities=20%  Similarity=0.175  Sum_probs=21.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .+...|+++|++|+||||+.+.|..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998754

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.19  E-value=0.0025  Score=45.18  Aligned_cols=23  Identities=13%  Similarity=0.238  Sum_probs=20.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      ...|+|.|.+||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.19  E-value=0.003  Score=44.15  Aligned_cols=22  Identities=32%  Similarity=0.564  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      -.++|.|++|+|||+|++.+..
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999998764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.18  E-value=0.0025  Score=50.55  Aligned_cols=22  Identities=23%  Similarity=0.549  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .++|+|++|+|||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5789999999999999988754

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.17  E-value=0.0028  Score=44.37  Aligned_cols=21  Identities=19%  Similarity=0.393  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      -.+|+|+.|+|||||++.+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999998753

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.16  E-value=0.0011  Score=47.66  Aligned_cols=21  Identities=14%  Similarity=0.324  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      -|+|+|.+|+||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999998863

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.11  E-value=0.0032  Score=46.90  Aligned_cols=20  Identities=20%  Similarity=0.326  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhh
Q 028466           11 KLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~   30 (208)
                      -|+|+|++|||||||.+.|.
T Consensus         3 li~I~G~~GSGKSTla~~La   22 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIA   22 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            47899999999999999885

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.11  E-value=0.0016  Score=51.03  Aligned_cols=24  Identities=21%  Similarity=0.288  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      .++|+|++|+|||||++.+.+-..
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            478999999999999998876543

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.10  E-value=0.0034  Score=43.44  Aligned_cols=21  Identities=14%  Similarity=0.341  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998753

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.10  E-value=0.0032  Score=44.20  Aligned_cols=21  Identities=33%  Similarity=0.430  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      .|+|+|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999998753

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.09  E-value=0.0043  Score=47.53  Aligned_cols=31  Identities=19%  Similarity=0.362  Sum_probs=19.8

Q ss_pred             CCCCCCCc-ceeEEEEcCCCCcHHHHHHHhhc
Q 028466            1 MAPVSALA-KYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         1 m~~~~~~~-~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      |+.|.... ..-|+|+|++|||||+|...|..
T Consensus         1 ~~~~~~~~~~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A            1 MSDISKASLPKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             ------CCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCccccCCCCcEEEEECCCccCHHHHHHHHHH
Confidence            55544322 34578899999999999998863

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.09  E-value=0.0029  Score=50.63  Aligned_cols=22  Identities=14%  Similarity=0.270  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      -++|+|+.|+|||||++.+.+.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999998754

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.07  E-value=0.0024  Score=49.23  Aligned_cols=23  Identities=17%  Similarity=0.391  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      -++|+|+.|+|||||++.+.+..
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEEecCCCCHHHHHHHHHhhc
Confidence            46788999999999999998653

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.07  E-value=0.0042  Score=46.37  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      ..|+|+|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            5789999999999999998864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.07  E-value=0.0039  Score=45.65  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=19.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~   30 (208)
                      ...|+|+|.+|+||||+.+.|.
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La   37 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLA   37 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999875

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.05  E-value=0.0028  Score=51.39  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=20.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .-.++|+|+.|+|||||++.|.+-
T Consensus       138 Ge~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          138 GPRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCc
Confidence            347899999999999999988754

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.03  E-value=0.0048  Score=45.01  Aligned_cols=29  Identities=21%  Similarity=0.194  Sum_probs=21.8

Q ss_pred             CCCCCCcceeEEEEcCCCCcHHHHHHHhh
Q 028466            2 APVSALAKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         2 ~~~~~~~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      +|+...+..-|+|.|.+|+||||+++.|.
T Consensus        14 ~~~~~~~~~~i~~~G~~g~GKst~~~~l~   42 (223)
T 3ld9_A           14 AQTQGPGSMFITFEGIDGSGKTTQSHLLA   42 (223)
T ss_dssp             -----CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            35666778889999999999999999875

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.00  E-value=0.0037  Score=47.09  Aligned_cols=21  Identities=24%  Similarity=0.450  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q 028466           12 LVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~   32 (208)
                      ++|+|++|+|||||++.+.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            899999999999999988754

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.00  E-value=0.0037  Score=45.35  Aligned_cols=22  Identities=23%  Similarity=0.404  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      -++|+|++|+|||||+..+.+.
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4788999999999999988743

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.98  E-value=0.0037  Score=48.99  Aligned_cols=23  Identities=17%  Similarity=0.313  Sum_probs=20.0

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      +.-.++++|+.|+||||+++.|.
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~La  178 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLA  178 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHH
Confidence            34578999999999999999876

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.97  E-value=0.0049  Score=50.68  Aligned_cols=24  Identities=21%  Similarity=0.456  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      -.++|+|++|+|||||++.+.+--
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            459999999999999999987643

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.97  E-value=0.0037  Score=48.49  Aligned_cols=22  Identities=18%  Similarity=0.412  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .++++|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999988653

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.96  E-value=0.012  Score=41.88  Aligned_cols=85  Identities=11%  Similarity=0.071  Sum_probs=55.7

Q ss_pred             EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCeEEEEEeCCCCcCccCcCHH
Q 028466           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTER--GSDVIIVLVGNKTDLVDKRQVSIE  135 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~~~~  135 (208)
                      +.+.|+|+|+..  .......+..+|.+|++...+.. + ..+...+..+....  ..+.++.+|.|+.|....   ...
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~  148 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN  148 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence            578999999865  33445567789999999988643 4 55666666665433  234667888999995322   233


Q ss_pred             HHHHHHHHcCCeEE
Q 028466          136 EGEAKARELNVMFI  149 (208)
Q Consensus       136 ~~~~~~~~~~~~~~  149 (208)
                      +..+...+++.+++
T Consensus       149 ~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          149 VLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHTCCBC
T ss_pred             HHHHHHHHcCCcee
Confidence            45555666665544

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.92  E-value=0.004  Score=50.76  Aligned_cols=23  Identities=30%  Similarity=0.602  Sum_probs=20.0

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      +.-.++|+|++|+|||||++.|.
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LA  314 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLA  314 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHH
Confidence            34578999999999999999875

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.91  E-value=0.0052  Score=42.43  Aligned_cols=20  Identities=30%  Similarity=0.463  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCcHHHHHHHhh
Q 028466           11 KLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~   30 (208)
                      .|+|.|.+||||||+.+.|.
T Consensus         9 ~i~l~G~~GsGKSTva~~La   28 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELG   28 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            68899999999999999875

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.90  E-value=0.0043  Score=48.45  Aligned_cols=25  Identities=12%  Similarity=0.282  Sum_probs=21.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .=+++|+|+.|+|||||++.+.+..
T Consensus        71 Gq~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           71 GQRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3478999999999999999988764

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.87  E-value=0.0072  Score=44.23  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=20.9

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      +..-|+|.|++|+||||+++.|..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            457789999999999999998864

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.87  E-value=0.0054  Score=41.75  Aligned_cols=19  Identities=21%  Similarity=0.571  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHhh
Q 028466           12 LVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~   30 (208)
                      .+|+|+.|+||||+++.+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5789999999999999875

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.85  E-value=0.0059  Score=43.46  Aligned_cols=25  Identities=12%  Similarity=0.186  Sum_probs=21.4

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .-+.|.|+|.+||||||+.+.|...
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999988643

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.83  E-value=0.0067  Score=43.64  Aligned_cols=24  Identities=13%  Similarity=0.213  Sum_probs=20.3

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      +...|+|+|.+|+||||+.+.|..
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999998753

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.82  E-value=0.004  Score=43.33  Aligned_cols=23  Identities=39%  Similarity=0.642  Sum_probs=19.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .-.++|.|++|+|||+|++.+..
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999998764

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.82  E-value=0.0047  Score=45.24  Aligned_cols=24  Identities=25%  Similarity=0.304  Sum_probs=18.0

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      ++..-|+|.|.+|+||||+++.|.
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~   46 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFC   46 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHH
Confidence            456779999999999999999875

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.81  E-value=0.0045  Score=47.03  Aligned_cols=22  Identities=9%  Similarity=0.305  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      -++|+|++|+|||||+..+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999988754

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.79  E-value=0.0051  Score=45.73  Aligned_cols=23  Identities=17%  Similarity=0.203  Sum_probs=20.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .-.|+|+|++|+||||+.+.|..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998753

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.77  E-value=0.0054  Score=44.63  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=19.9

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .-.++|.|++|+|||+|++.+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999998864

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.77  E-value=0.0053  Score=45.54  Aligned_cols=22  Identities=18%  Similarity=0.273  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      -.++|.|++|+|||+|++.+.+
T Consensus        46 ~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            3589999999999999998864

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.75  E-value=0.0057  Score=44.16  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      +.|+|+|++|+||||+.+.|..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998754

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.75  E-value=0.0069  Score=43.17  Aligned_cols=21  Identities=24%  Similarity=0.325  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      .|+|.|++|+||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998854

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=95.74  E-value=0.0056  Score=44.07  Aligned_cols=22  Identities=18%  Similarity=0.134  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      --++|+|++|+|||||+..+..
T Consensus        21 ~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           21 VLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999987

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.70  E-value=0.0056  Score=49.35  Aligned_cols=25  Identities=12%  Similarity=0.235  Sum_probs=21.5

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .=+++|+|++|+|||||++.+.+..
T Consensus       157 Gq~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          157 GQRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccc
Confidence            3478999999999999999888664

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.70  E-value=0.0081  Score=49.74  Aligned_cols=24  Identities=13%  Similarity=0.214  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      =.++|+|+.|+|||||++.+.+..
T Consensus        48 e~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           48 MVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999988653

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.69  E-value=0.006  Score=44.62  Aligned_cols=23  Identities=22%  Similarity=0.262  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      --++|+|++|+|||||+..+...
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            35789999999999999998864

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.68  E-value=0.0061  Score=43.38  Aligned_cols=22  Identities=27%  Similarity=0.350  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      -.++|.|++|+|||+|+..+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999998764

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.66  E-value=0.01  Score=47.54  Aligned_cols=24  Identities=21%  Similarity=0.301  Sum_probs=20.5

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      ...-|+|+|.+|+||||+.++|..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345688899999999999999875

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.65  E-value=0.0077  Score=44.16  Aligned_cols=25  Identities=16%  Similarity=0.283  Sum_probs=21.7

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .+...|+|+|++|+||||+.+.|..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999998764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.65  E-value=0.006  Score=50.99  Aligned_cols=24  Identities=17%  Similarity=0.236  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      =.++++|++|+|||||++.+.+-.
T Consensus       370 ~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          370 KTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhhcc
Confidence            368999999999999999887653

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.64  E-value=0.006  Score=49.66  Aligned_cols=20  Identities=20%  Similarity=0.463  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhh
Q 028466           11 KLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~   30 (208)
                      .++|+|++|+|||||++.+.
T Consensus        31 ~~~liG~nGsGKSTLl~~l~   50 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFV   50 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHh
Confidence            47899999999999999876

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.60  E-value=0.008  Score=45.65  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      ..|+|+|.+|+||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.57  E-value=0.0078  Score=40.58  Aligned_cols=24  Identities=8%  Similarity=0.065  Sum_probs=20.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      ...|++.|++|+|||++.+.+...
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHh
Confidence            356999999999999999988654

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.55  E-value=0.0094  Score=43.14  Aligned_cols=25  Identities=16%  Similarity=0.236  Sum_probs=20.9

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhh
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      .|+..-|+|.|.+|+||||+++.|.
T Consensus         3 ~m~g~~i~~eG~~gsGKsT~~~~l~   27 (213)
T 4edh_A            3 AMTGLFVTLEGPEGAGKSTNRDYLA   27 (213)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCceEEEEEcCCCCCHHHHHHHHH
Confidence            3667889999999999999999875

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.54  E-value=0.0091  Score=49.91  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      =.++++|++|+|||||++.+.+-.
T Consensus       370 ~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          370 KTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999887653

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=95.54  E-value=0.083  Score=37.84  Aligned_cols=85  Identities=8%  Similarity=-0.022  Sum_probs=55.8

Q ss_pred             EEEEEEecCCc-hhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHH
Q 028466           58 VRLQLWDTAGQ-ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEE  136 (208)
Q Consensus        58 ~~~~i~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~  136 (208)
                      +.+.|+|+|+. ..  ......+..+|.+|++...+ ..+...+...+..+....  +.++.+|.|+.|....  ....+
T Consensus        68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~~  140 (209)
T 3cwq_A           68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGDE  140 (209)
T ss_dssp             CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHHH
T ss_pred             CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHHH
Confidence            57899999976 33  23445677899999999875 456666666666665533  3567888899986420  11344


Q ss_pred             HHHHHHHcCCeEE
Q 028466          137 GEAKARELNVMFI  149 (208)
Q Consensus       137 ~~~~~~~~~~~~~  149 (208)
                      ..+...+++.+++
T Consensus       141 ~~~~l~~~g~~v~  153 (209)
T 3cwq_A          141 ARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHTTCCBC
T ss_pred             HHHHHHHcCCchh
Confidence            5555566666544

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.51  E-value=0.0095  Score=49.29  Aligned_cols=24  Identities=29%  Similarity=0.386  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      =-++|+|+.|+|||||++.+.+..
T Consensus        26 ei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           26 TILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCC
Confidence            357899999999999999988653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.51  E-value=0.0095  Score=50.02  Aligned_cols=24  Identities=17%  Similarity=0.331  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      =.++|+|+.|+|||||++.+.+..
T Consensus       104 ei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          104 QVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhcCC
Confidence            368999999999999999887653

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.50  E-value=0.0072  Score=47.68  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .-.++|+|++|+|||||++.+.+
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            34789999999999999998874

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=95.48  E-value=0.014  Score=41.86  Aligned_cols=31  Identities=26%  Similarity=0.468  Sum_probs=26.1

Q ss_pred             CCCCCCCcceeEEEEcCCCCcHHHHHHHhhc
Q 028466            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      |+|.-+.+..-|+|.|.++|||+++.+.+..
T Consensus         3 ~~~~~~~~~~II~itGk~~SGKd~va~~l~~   33 (202)
T 3ch4_B            3 MAPLGGAPRLVLLFSGKRKSGKDFVTEALQS   33 (202)
T ss_dssp             CCTTBCCCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccccccCCCEEEEEECCCCCChHHHHHHHHH
Confidence            7777555678999999999999999988764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.46  E-value=0.0084  Score=43.41  Aligned_cols=21  Identities=38%  Similarity=0.520  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      -++|.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998863

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.45  E-value=0.01  Score=45.48  Aligned_cols=24  Identities=21%  Similarity=0.270  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      ..-|+|+|++|||||+|...|...
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHh
Confidence            356889999999999999998643

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.45  E-value=0.0087  Score=42.75  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      .++|.|++|+|||++++.+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999998864

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.44  E-value=0.0063  Score=50.83  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      =.++++|++|+|||||++.+.+-
T Consensus       368 ~~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          368 ETVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTS
T ss_pred             CEEEEECCCCChHHHHHHHHhcC
Confidence            36899999999999999977654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.42  E-value=0.0071  Score=50.76  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      =.++++|++|+|||||++.+.+-.
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Confidence            478999999999999999887543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.39  E-value=0.012  Score=49.47  Aligned_cols=24  Identities=17%  Similarity=0.228  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      =.++|+|+.|+|||||++.+.+..
T Consensus       118 e~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          118 MVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhCCC
Confidence            368999999999999999887653

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.39  E-value=0.0089  Score=46.98  Aligned_cols=19  Identities=26%  Similarity=0.400  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHhh
Q 028466           12 LVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~   30 (208)
                      .+|+|+.|+|||||++.+.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5689999999999999876

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.37  E-value=0.0088  Score=44.98  Aligned_cols=23  Identities=17%  Similarity=0.312  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      -.++|.|++|+|||+|++.+...
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999988643

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.36  E-value=0.0088  Score=45.31  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .-.++|.|++|+|||++++.+..
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            35789999999999999998865

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.36  E-value=0.0094  Score=44.12  Aligned_cols=22  Identities=23%  Similarity=0.285  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      -.++|.|++|+|||++.+.+..
T Consensus        40 ~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999998864

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.31  E-value=0.0088  Score=45.02  Aligned_cols=21  Identities=10%  Similarity=0.132  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999999998874

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.30  E-value=0.0083  Score=50.22  Aligned_cols=23  Identities=17%  Similarity=0.290  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      =.++++|++|+|||||++.+.+-
T Consensus       370 e~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          370 SLVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             CEEEEECSSSSSHHHHHHTTTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999987654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.28  E-value=0.013  Score=48.58  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      .++|+|+.|+|||||++.+.+...
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999886543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.25  E-value=0.014  Score=48.29  Aligned_cols=24  Identities=17%  Similarity=0.261  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      .++|+|+.|+|||||++.+.+...
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999999987543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.23  E-value=0.014  Score=48.96  Aligned_cols=24  Identities=17%  Similarity=0.261  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      .++|+|+.|+|||||++.+.+...
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            578999999999999999887543

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.23  E-value=0.015  Score=41.60  Aligned_cols=26  Identities=19%  Similarity=0.308  Sum_probs=22.0

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      ....|+|+|++|+|||+|...|....
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            34678999999999999999997653

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=95.22  E-value=0.17  Score=36.87  Aligned_cols=87  Identities=9%  Similarity=0.015  Sum_probs=56.9

Q ss_pred             EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHH
Q 028466           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEG  137 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~  137 (208)
                      +.+.|+|+|+..  .......+..+|.+|++...+ ..+...+...+..+.........+.+|.|+.+....  ....  
T Consensus       119 yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~--~~~~--  191 (245)
T 3ea0_A          119 YDYIIVDFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSR--ITSD--  191 (245)
T ss_dssp             CSEEEEEEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT--SCHH--
T ss_pred             CCEEEEeCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCC--CCHH--
Confidence            568999999754  334555678899999999875 567777777777776543333457788899986432  2232  


Q ss_pred             HHHHHHcCCeEEEee
Q 028466          138 EAKARELNVMFIETS  152 (208)
Q Consensus       138 ~~~~~~~~~~~~~~S  152 (208)
                       .....++.+++..-
T Consensus       192 -~~~~~~~~~v~~~i  205 (245)
T 3ea0_A          192 -EIEKVIGRPISKRI  205 (245)
T ss_dssp             -HHHHHHTSCEEEEE
T ss_pred             -HHHHHhCCCeEEEC
Confidence             33344566665543

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.18  E-value=0.011  Score=45.03  Aligned_cols=22  Identities=18%  Similarity=0.140  Sum_probs=18.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .-+++.|++|+|||+|.+.+..
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4567779999999999998864

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.18  E-value=0.013  Score=43.18  Aligned_cols=26  Identities=23%  Similarity=0.321  Sum_probs=20.7

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhh
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      +.|+..-|+|.|.+|+||||+++.|.
T Consensus        23 ~~~~~~~i~~eG~~GsGKsT~~~~l~   48 (236)
T 3lv8_A           23 NAMNAKFIVIEGLEGAGKSTAIQVVV   48 (236)
T ss_dssp             ---CCCEEEEEESTTSCHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            34566789999999999999999875

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.17  E-value=0.011  Score=45.09  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      -.++|.|++|+|||+|++.+...
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            45899999999999999988753

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.16  E-value=0.012  Score=43.91  Aligned_cols=24  Identities=17%  Similarity=0.285  Sum_probs=20.6

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      +...|+|.|..|+||||+.+.|..
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457889999999999999998764

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.15  E-value=0.011  Score=45.49  Aligned_cols=22  Identities=18%  Similarity=0.271  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      -.++|.|++|+|||+|++.+..
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3589999999999999998864

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.15  E-value=0.016  Score=44.84  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .-|+|+|+.|+|||+|...|..
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999998864

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.13  E-value=0.011  Score=45.12  Aligned_cols=85  Identities=15%  Similarity=0.064  Sum_probs=46.5

Q ss_pred             EEEEEEecCCchhhccc-h---hhhhc--cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC
Q 028466           58 VRLQLWDTAGQERFRSL-I---PSYIR--DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ  131 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~-~---~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~  131 (208)
                      +.+.|+||+|....... .   ...+.  ..+.+++|+|++..  ...+..+...+.   ..+. .-+|.||.|....  
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~~-~giVltk~D~~~~--  254 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVPV-NQYIFTKIDETTS--  254 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSCC-CEEEEECTTTCSC--
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCCC-CEEEEeCCCcccc--
Confidence            56899999997643321 1   12222  35778889988732  233333322222   1112 2355699997422  


Q ss_pred             cCHHHHHHHHHHcCCeEEEee
Q 028466          132 VSIEEGEAKARELNVMFIETS  152 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~S  152 (208)
                        ...+...+...++++..+.
T Consensus       255 --~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          255 --LGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             --CHHHHHHHHTCSCCCSEEC
T ss_pred             --hhHHHHHHHHHCcCEEEEE
Confidence              2355666677777655444

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.11  E-value=0.014  Score=42.67  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=19.5

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      .-+++.|+|++||||||+...|.
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~   29 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIK   29 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHH
Confidence            35789999999999999999875

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.09  E-value=0.011  Score=45.98  Aligned_cols=20  Identities=20%  Similarity=0.394  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q 028466           12 LVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~   31 (208)
                      ++|.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998865

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.08  E-value=0.012  Score=42.40  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=18.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      -.+++.|++|+|||+++..+..
T Consensus        59 n~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999887753

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.07  E-value=0.0076  Score=45.80  Aligned_cols=24  Identities=13%  Similarity=0.222  Sum_probs=17.4

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      +.+.|+|.|++|+||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998753

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.03  E-value=0.013  Score=44.86  Aligned_cols=86  Identities=16%  Similarity=0.099  Sum_probs=47.0

Q ss_pred             EEEEEEecCCchhhccch-------hhhh-----ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 028466           58 VRLQLWDTAGQERFRSLI-------PSYI-----RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTD  125 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~-------~~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D  125 (208)
                      +.+.|+||||........       ...+     ...|.+++|.|+...  .+.+.. ...+....   ...-+|.||.|
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~~---~i~gvVlTk~D  260 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEAV---NVTGIILTKLD  260 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHHS---CCCEEEEECGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhcC---CCCEEEEeCCC
Confidence            458999999953221111       1111     247889999998633  222222 22232221   22345569999


Q ss_pred             CcCccCcCHHHHHHHHHHcCCeEEEeec
Q 028466          126 LVDKRQVSIEEGEAKARELNVMFIETSA  153 (208)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~  153 (208)
                      ....    .-.+.......++++..+..
T Consensus       261 ~~~~----gG~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          261 GTAK----GGITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             GCSC----TTHHHHHHHHHCCCEEEEEC
T ss_pred             Cccc----hHHHHHHHHHHCCCEEEEeC
Confidence            6321    23466777788887776654

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.02  E-value=0.016  Score=42.54  Aligned_cols=22  Identities=23%  Similarity=0.419  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      ..|+|.|..|+||||+++.|..
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5689999999999999998864

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.01  E-value=0.015  Score=41.69  Aligned_cols=20  Identities=20%  Similarity=0.507  Sum_probs=17.2

Q ss_pred             eEEEEcCCCCcHHHHHHHhh
Q 028466           11 KLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~   30 (208)
                      -.+|+|+.|+||||+++.+.
T Consensus        25 ~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHH
Confidence            35788999999999999864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.01  E-value=0.017  Score=48.51  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHhhcCCC
Q 028466           12 LVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      ++|+|+.|+|||||++.+.+...
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            78999999999999999887544

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.00  E-value=0.017  Score=43.95  Aligned_cols=22  Identities=23%  Similarity=0.540  Sum_probs=18.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~   30 (208)
                      ...++|.|++|+|||++.+.+.
T Consensus        67 ~~~vll~G~~GtGKT~la~~la   88 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMA   88 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHH
Confidence            3469999999999999998654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=94.98  E-value=0.012  Score=45.91  Aligned_cols=22  Identities=18%  Similarity=0.362  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      -.++|.|++|+|||+|++.+..
T Consensus        46 ~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           46 NNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998874

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=94.97  E-value=0.014  Score=44.25  Aligned_cols=22  Identities=32%  Similarity=0.558  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      -.+++.|++|+|||++.+.+..
T Consensus        51 ~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998864

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=94.96  E-value=0.016  Score=40.73  Aligned_cols=21  Identities=19%  Similarity=0.340  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q 028466           12 LVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~   32 (208)
                      ++|+|.++||||+|..+|...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999754

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=94.92  E-value=0.013  Score=45.75  Aligned_cols=23  Identities=17%  Similarity=0.174  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      --+.|+|++|+|||||+..+...
T Consensus       132 ~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          132 AITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999998865

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=94.89  E-value=0.015  Score=42.51  Aligned_cols=21  Identities=24%  Similarity=0.537  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      -++|+|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999877753

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=94.87  E-value=0.015  Score=45.63  Aligned_cols=22  Identities=23%  Similarity=0.370  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .++|.|++|+|||+|++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988754

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=94.85  E-value=0.023  Score=42.50  Aligned_cols=25  Identities=16%  Similarity=0.315  Sum_probs=21.1

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      ....++|.|++|+|||+|...+...
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3467999999999999999988653

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=94.83  E-value=0.016  Score=44.11  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      -.++|+|++|+|||++.+.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            36899999999999999987643

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=94.79  E-value=0.025  Score=44.15  Aligned_cols=23  Identities=17%  Similarity=0.421  Sum_probs=19.7

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      ...+|+|+|++|+||||+.+.|.
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la   45 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELC   45 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHH
Confidence            34679999999999999998654

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.78  E-value=0.016  Score=44.95  Aligned_cols=22  Identities=36%  Similarity=0.591  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .+++.|++|+||||+++.+...
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999988654

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=94.78  E-value=0.016  Score=44.65  Aligned_cols=23  Identities=13%  Similarity=0.333  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      -.|+|.|++|+|||+|.+.+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            46899999999999999988753

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.77  E-value=0.018  Score=50.80  Aligned_cols=24  Identities=13%  Similarity=0.332  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      .++|+|+.|+|||||++.+.++..
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            579999999999999999986544

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=94.73  E-value=0.13  Score=37.50  Aligned_cols=25  Identities=12%  Similarity=0.010  Sum_probs=19.5

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      ++-|++.|+++.||++|++++.+..
T Consensus        29 kilvl~~~~~~~~~~~~~~~lf~~~   53 (233)
T 3uc9_A           29 KILVLSDHPHNFLKTQFLQDLFHCS   53 (233)
T ss_dssp             EEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred             ceEEEecCcccccHHHHHHHHhccc
Confidence            3444444999999999999998774

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=94.66  E-value=0.022  Score=39.75  Aligned_cols=25  Identities=16%  Similarity=0.391  Sum_probs=21.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      ..-+++.|++|+||||+.-.|....
T Consensus        16 G~gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence            4568999999999999999998654

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=94.62  E-value=0.02  Score=44.03  Aligned_cols=22  Identities=14%  Similarity=0.276  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      -.++|.|++|+|||+|.+.+..
T Consensus        52 ~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4699999999999999998864

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=94.61  E-value=0.25  Score=37.65  Aligned_cols=21  Identities=14%  Similarity=0.322  Sum_probs=16.2

Q ss_pred             eEEEE-cCCCCcHHHHHHHhhc
Q 028466           11 KLVFL-GDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vv-G~~~~GKStli~~l~~   31 (208)
                      .++++ |++|+|||++++.+..
T Consensus        49 ~~~L~~G~~G~GKT~la~~la~   70 (324)
T 3u61_B           49 HIILHSPSPGTGKTTVAKALCH   70 (324)
T ss_dssp             SEEEECSSTTSSHHHHHHHHHH
T ss_pred             eEEEeeCcCCCCHHHHHHHHHH
Confidence            34444 6699999999998864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.58  E-value=0.012  Score=51.94  Aligned_cols=23  Identities=17%  Similarity=0.460  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|+.|+|||||++.+.+..
T Consensus       701 ivaIiGpNGSGKSTLLklLaGll  723 (986)
T 2iw3_A          701 RIAVIGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             EEEECSCCCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999988653

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=94.57  E-value=0.024  Score=41.01  Aligned_cols=23  Identities=22%  Similarity=0.224  Sum_probs=19.7

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      +..-|+|-|.+|+||||+++.|.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~   24 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVV   24 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34678899999999999999875

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.55  E-value=0.019  Score=45.99  Aligned_cols=22  Identities=18%  Similarity=0.351  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      --|++.|+||+|||+|.+.+.+
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999998864

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=94.55  E-value=0.015  Score=48.32  Aligned_cols=25  Identities=16%  Similarity=0.369  Sum_probs=21.3

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      +...|+|+|++|+|||||.+.|.+.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHh
Confidence            4467999999999999999988654

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.47  E-value=0.021  Score=44.18  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .+++.|++|+|||++++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999987643

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=94.47  E-value=0.0094  Score=44.43  Aligned_cols=21  Identities=19%  Similarity=0.311  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      .+++.|++|+|||+|++.+..
T Consensus        46 ~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999998864

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=94.46  E-value=0.02  Score=44.69  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      -.++|.|++|+|||+|++.+..
T Consensus        71 ~~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998863

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=94.46  E-value=0.024  Score=43.43  Aligned_cols=23  Identities=22%  Similarity=0.446  Sum_probs=19.9

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .-.+++.|++|+|||+|+..+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998754

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=94.46  E-value=0.019  Score=44.89  Aligned_cols=23  Identities=17%  Similarity=0.267  Sum_probs=19.9

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .-.++|.|++|+|||+|++.+..
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999998864

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.45  E-value=0.022  Score=45.80  Aligned_cols=23  Identities=17%  Similarity=0.179  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .-.|++.||||+|||.|.+.+.+
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHH
Confidence            35799999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	208
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	3e-53
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	8e-51
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	8e-48
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	8e-48
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-47
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	4e-47
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	1e-45
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-44
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	6e-44
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	7e-43
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	1e-42
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	4e-41
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	8e-41
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-40
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	5e-40
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	4e-37
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	8e-37
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-36
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	8e-36
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-35
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	3e-35
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	6e-35
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-34
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	4e-34
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	6e-34
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	1e-33
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	8e-33
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	9e-33
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	3e-32
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	6e-32
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	4e-31
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	6e-31
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	1e-30
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	2e-30
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-30
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-29
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-28
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	1e-28
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-28
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	4e-28
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-26
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	2e-25
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-25
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	9e-25
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-24
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	7e-24
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	1e-23
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	4e-23
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	6e-23
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-22
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	6e-19
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	2e-18
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	4e-18
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	2e-16
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	5e-16
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	9e-14
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	3e-09
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	3e-08
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	5e-08
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	7e-08
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	2e-06
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	2e-06
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	4e-06
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	3e-05
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	4e-05
d2qn6a3	205	c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su	6e-05
d1wb1a4	179	c.37.1.8 (A:1-179) Elongation factor SelB, N-termi	7e-05
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	3e-04
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	4e-04
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	5e-04

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  166 bits (420), Expect = 3e-53
 Identities = 137/164 (83%), Positives = 154/164 (93%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFRSLIPSYIRDS+ AV+VYD+ +  SF  TTKW+++VRTERGSDVII+LVGNKTDL DK
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGM 173
           RQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGM
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 164

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  160 bits (405), Expect = 8e-51
 Identities = 68/161 (42%), Positives = 107/161 (66%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  +Y R +   ++VYD+ + +SF N   W+  +     +DV  +++GNK D+ DK
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           RQVS E GE  A +  + F+ETSAKA  N++  F  +A  +
Sbjct: 127 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  152 bits (385), Expect = 8e-48
 Identities = 64/161 (39%), Positives = 106/161 (65%), Gaps = 1/161 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQ+WDTAGQE
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  +Y R +   ++VYD+   ++F N  +W + V      +  ++LVGNK+D+ + 
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 121

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           R V+ ++GEA A+EL + FIE+SAK   N+  +F  +A  +
Sbjct: 122 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  153 bits (387), Expect = 8e-48
 Identities = 75/186 (40%), Positives = 112/186 (60%), Gaps = 5/186 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+  VGK+ ++ RF  D + N Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  SY R S   +IVYDV  ++SF     W++E+     S V+ +LVGNK DL DK
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL-----PGMETLSSTKQEDL 184
           R V  +  +  A    + F+ETSA    N++  F  +A  +           ++ K+ED 
Sbjct: 127 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDK 186

Query: 185 VDVNLK 190
            +VNLK
Sbjct: 187 GNVNLK 192

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  151 bits (383), Expect = 1e-47
 Identities = 65/161 (40%), Positives = 100/161 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ +    V+LQ+WDTAGQE
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFRS+  SY R ++  ++ YD+   +SF    +W+ E+     + VI VLVGNK DL ++
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           R+VS +  E  +   ++ ++ETSAK   N++ LF  +A  L
Sbjct: 126 REVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (380), Expect = 4e-47
 Identities = 68/162 (41%), Positives = 102/162 (62%), Gaps = 1/162 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +K++ +GD  VGKT ++ RF    F   T+ +T+GIDF +K + ++   V+LQ+WDTAGQ
Sbjct: 7   FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 66

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           ERFRS+  +Y RD+   +++YDV ++ SF N   W+ E+      DV ++L+GNK D   
Sbjct: 67  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 126

Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           +R V  E+GE  A+E  + F+ETSAK G N+   F  IA  L
Sbjct: 127 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  147 bits (371), Expect = 1e-45
 Identities = 60/161 (37%), Positives = 110/161 (68%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 5   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R +  +Y R +  A++VYD+A   ++ N  +W++E+R    S+++I+LVGNK+DL   
Sbjct: 65  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 124

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           R V  +E  A A + N+ FIETSA    N++  F+ I   +
Sbjct: 125 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 165

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (362), Expect = 2e-44
 Identities = 57/161 (35%), Positives = 101/161 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   KF      TIG++F ++ + +  + ++LQ+WDTAGQE
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFR++  SY R ++ A++VYD+  R ++ + + W+ + R     + +I+L+GNK DL  +
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 124

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           R V+ EE +  A E  ++F+E SAK G N++  F + A  +
Sbjct: 125 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  142 bits (359), Expect = 6e-44
 Identities = 61/161 (37%), Positives = 99/161 (61%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +   +++YD+ + +SF     W  +++T    +  ++LVGNK D+ D+
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           R VS E G   A  L   F E SAK   N+K  F ++   +
Sbjct: 126 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (353), Expect = 7e-43
 Identities = 61/171 (35%), Positives = 98/171 (57%), Gaps = 3/171 (1%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
            L   K++ +G+  VGK+S++ RF  D FD    ATIG+DF  KT+ ++    +L +WDT
Sbjct: 4   VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDT 63

Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTD 125
           AGQERFR+L PSY R +   ++VYDV  R +F+    W+ E+ T    + I+ ++     
Sbjct: 64  AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKI 123

Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL---PGM 173
             + R+V   EG   AR+ +++FIE SAK    ++  F ++   +   PG+
Sbjct: 124 DKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGL 174

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (350), Expect = 1e-42
 Identities = 64/161 (39%), Positives = 108/161 (67%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
            FRS+  SY R ++ A++VYD+  R++F + T W+E+ R    S+++I+L+GNK+DL  +
Sbjct: 64  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 123

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           R V  EEGEA ARE  ++F+ETSAK   N++  F   A  +
Sbjct: 124 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 164

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (341), Expect = 4e-41
 Identities = 61/161 (37%), Positives = 102/161 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G+   GK+ ++ +F+  KF +    TIG++F SK + +  + V+LQ+WDTAGQE
Sbjct: 6   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RFRS+  SY R ++ A++VYD+ SR+++   T W+ + R     +++I+L GNK DL   
Sbjct: 66  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 125

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           R+V+  E    A+E  +MF+ETSA  G N++  F + A  +
Sbjct: 126 REVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 166

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (338), Expect = 8e-41
 Identities = 56/163 (34%), Positives = 91/163 (55%), Gaps = 2/163 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YK+V LG   VGK+++  +F+   F   Y  TI  DF  K + ++     L++ DTAG 
Sbjct: 3   EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGT 61

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLV 127
           E+F S+   YI++    ++VY + ++QSF +     +++   +    V ++LVGNK DL 
Sbjct: 62  EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121

Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
            +R+VS  EG A A E    F+ETSAK+   +  LF +I   +
Sbjct: 122 SEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (337), Expect = 2e-40
 Identities = 62/172 (36%), Positives = 98/172 (56%), Gaps = 11/172 (6%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVR 59
            KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +    +           V 
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 60  LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIV 118
           LQLWDTAGQERFRSL  ++ RD+   ++++D+ S+QSFLN   W+ +++     +   IV
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 119 LVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           L+GNK DL D+R+V+  +    A +  + + ETSA  G N++     +   +
Sbjct: 126 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 177

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (333), Expect = 5e-40
 Identities = 68/165 (41%), Positives = 112/165 (67%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63

Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R +  A++VYD+ + +SF     WV+E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123

Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
            +KR V  +E ++ A + +++F+ETSAK   N+  +F  IA  LP
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (313), Expect = 4e-37
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R+  +KF++ +  T+G  FL+K + +  + V L +WDTAGQE
Sbjct: 4   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
           RF +L P Y RDS+ A++VYD+    SF     WV+E+R   G+++ + +VGNK DL  +
Sbjct: 64  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 123

Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMET 175
           R VSI+E E+ A  +      TSAK    I+ LF  +   +  +ET
Sbjct: 124 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM--IET 167

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  124 bits (311), Expect = 8e-37
 Identities = 67/166 (40%), Positives = 100/166 (60%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           AL + K+  LGD  VGK+SI+ RF+ D FD     TIG  F++KT+  ++   +  +WDT
Sbjct: 1   ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 60

Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTD 125
           AG ERFR+L P Y R S+ A+IVYD+   ++F     WV E+R      +++ + GNK D
Sbjct: 61  AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 120

Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
           L D R+V   + +  A  ++ +F+ETSAK   NI  LF +I+  +P
Sbjct: 121 LTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 166

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  123 bits (309), Expect = 2e-36
 Identities = 57/166 (34%), Positives = 98/166 (59%), Gaps = 2/166 (1%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           +LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + DT
Sbjct: 1   SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDT 59

Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS-DVIIVLVGNKT 124
           AGQE + ++  +Y R     + V+ +   +SF  T  + E++   +   +V  +LVGNK+
Sbjct: 60  AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 119

Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           DL DKRQVS+EE + +A + NV ++ETSAK   N+  +F  +   +
Sbjct: 120 DLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 8e-36
 Identities = 62/166 (37%), Positives = 97/166 (58%), Gaps = 6/166 (3%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ LGD  VGK+S++ R++ +KFD     TIG++FL+K + ++   V +Q+WDTAGQE
Sbjct: 7   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVR----TERGSDVIIVLVGNKTD 125
           RFRSL   + R S   ++ + V   QSF N + W +E       +       V++GNK D
Sbjct: 67  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 126

Query: 126 LVDKRQVSIEEGEAKAREL-NVMFIETSAKAGFNIKALFRKIAAAL 170
           + + RQVS EE +A  R+  +  + ETSAK   N+ A F +    +
Sbjct: 127 ISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  121 bits (303), Expect = 1e-35
 Identities = 58/163 (35%), Positives = 94/163 (57%), Gaps = 5/163 (3%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT +  RF   +F +  +ATIG+DF  + + ++   +++QLWDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62

Query: 70  RFRSL-IPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS-DVIIVLVGNKTDLV 127
           RFR   +  Y R+    V VYD+ +  SF +   W+EE +    + D+  +LVGNK DL 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 122

Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKA---GFNIKALFRKIA 167
              QV  +  +  A   ++   ETSAK      +++A+F  +A
Sbjct: 123 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 3e-35
 Identities = 48/165 (29%), Positives = 88/165 (53%), Gaps = 3/165 (1%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59

Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ E+++  +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119

Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
            +  R V   + +  AR   + +IETSAK    ++  F  +   +
Sbjct: 120 -LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  119 bits (299), Expect = 6e-35
 Identities = 73/164 (44%), Positives = 106/164 (64%), Gaps = 3/164 (1%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV LG+ +VGK+SI+ RF+ + F    + TIG  FL++ + + + TV+ ++WDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL---V 127
           F SL P Y R++  A++VYDV   QSF+    WV+E+  +   D+II LVGNK D+    
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 124

Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
            +R+V+ EEGE  A E  ++F ETSAK G N+  +F  I   +P
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 1e-34
 Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 14/174 (8%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
            +  L P     + V ++ + V S  SF N  +      T        +LVG + DL D 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 130 RQV------------SIEEGEAKARELNVM-FIETSAKAGFNIKALFRKIAAAL 170
                          + E  E  AR+L  + ++E SA     +K +F +   A 
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 4e-34
 Identities = 57/163 (34%), Positives = 92/163 (56%), Gaps = 2/163 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           KY+LV +G   VGK+++  +F+   F   Y  TI  D  +K   ++DR  RL + DTAGQ
Sbjct: 5   KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQ 63

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEE-VRTERGSDVIIVLVGNKTDLV 127
           E F ++   Y+R     ++V+ V  R SF    K+  + +R +   +  ++L+GNK DL 
Sbjct: 64  EEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLD 123

Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
            +RQV+ EEG+  AR+L V ++E SAK   N+   F ++   +
Sbjct: 124 HQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 6e-34
 Identities = 50/174 (28%), Positives = 80/174 (45%), Gaps = 14/174 (8%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
            +  L P     + V++I + + S  SF N              +  I+LVG K DL D 
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124

Query: 130 RQVSIE------------EGEAKARELN-VMFIETSAKAGFNIKALFRKIAAAL 170
           +    +            +G A A+E+  V ++E SA     +K +F +   A+
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 1e-33
 Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 14/182 (7%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA        K V +GD +VGKT ++  +  D F   Y  T+  D  + ++ +  +   L
Sbjct: 1   MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLL 59

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
            L+DTAGQE +  L P     + V +I + V +  SF N  +       E   +V  +L+
Sbjct: 60  GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLI 119

Query: 121 GNKTDLVDKRQ------------VSIEEGEAKARELNVM-FIETSAKAGFNIKALFRKIA 167
           G + DL D  +            + +E+G+  A+E+    ++E SA     +K +F +  
Sbjct: 120 GTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 179

Query: 168 AA 169
            A
Sbjct: 180 IA 181

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 8e-33
 Identities = 53/164 (32%), Positives = 92/164 (56%), Gaps = 3/164 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTAG 
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGT 61

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVE-EVRTERGSDVIIVLVGNKTDLV 127
           E+F ++   Y+++     +VY + ++ +F +     E  +R +   DV ++LVGNK DL 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121

Query: 128 DKRQVSIEEGEAKARE-LNVMFIETSAKAGFNIKALFRKIAAAL 170
           D+R V  E+G+  AR+  N  F+E+SAK+  N+  +F  +   +
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 9e-33
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 14/175 (8%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++     D+F   Y  T+  +     + ++ + V L LWDTAG 
Sbjct: 2   RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGL 60

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           E +  L P    D+ V ++ + + S  S  N  +           +V I+LVGNK DL +
Sbjct: 61  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 120

Query: 129 KRQV------------SIEEGEAKARELNVM-FIETSAKAGFNIKALFRKIAAAL 170
                             EEG   A  +    ++E SAK    ++ +F     A 
Sbjct: 121 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 3e-32
 Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 2/163 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
            +KLV +G   VGK+++  +F+   F + Y      D  +K   ++    RL + DTAGQ
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDILDTAGQ 64

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGNKTDLV 127
           E F ++   Y+R     ++V+ +  RQSF    K   ++   +  D   +VLVGNK DL 
Sbjct: 65  EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 124

Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
            +RQV   E  A     +V + E SAK   N+   F ++  A+
Sbjct: 125 SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  112 bits (280), Expect = 6e-32
 Identities = 63/177 (35%), Positives = 100/177 (56%), Gaps = 4/177 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS----DVIIVLVGNKTD 125
           RF+SL  ++ R +   V+V+DV +  +F     W +E   +       +   V++GNK D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQE 182
           L +++  +         + N+ + ETSAK   N++  F+ IA      ET      E
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNE 179

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (274), Expect = 4e-31
 Identities = 43/176 (24%), Positives = 82/176 (46%), Gaps = 15/176 (8%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  +  + +  ++ + + L LWDT+G 
Sbjct: 2   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGS 60

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
             + ++ P    DS   +I +D++  ++  +  K  +    E   +  ++LVG K+DL  
Sbjct: 61  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 120

Query: 129 ------------KRQVSIEEGEAKARELNVM-FIETSAKAGFN-IKALFRKIAAAL 170
                       +  VS ++G   A+++    +IE SA    N ++ +F     A 
Sbjct: 121 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 176

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  109 bits (272), Expect = 6e-31
 Identities = 62/157 (39%), Positives = 92/157 (58%), Gaps = 1/157 (0%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +G+ +VGK+S+I R+    F   Y+ TIG+DFL + + + D  VRL LWDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
           F ++  +Y R +   V+V+    R+SF   + W E+V  E G D+   LV NK DL+D  
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDS 122

Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
            +  EE E  A+ L + F  TS K   N+  +F+ +A
Sbjct: 123 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 159

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 1e-30
 Identities = 51/168 (30%), Positives = 89/168 (52%), Gaps = 3/168 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 3   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
           E+F  L   Y   +  A+I++DV SR ++ N   W  ++      ++ IVL GNK D+ D
Sbjct: 63  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKD 121

Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
           ++     +     R+ N+ + + SAK+ +N +  F  +A  L G   L
Sbjct: 122 RK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 167

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (269), Expect = 2e-30
 Identities = 52/160 (32%), Positives = 86/160 (53%), Gaps = 3/160 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YKLV +GD  VGK+++  +F    F   Y  TI  D   K   ++++   L + DTAGQE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI-EDSYLKHTEIDNQWAILDVLDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTDLVD 128
            F ++   Y+R     +IVY V  + SF +  ++ + + R +      ++LV NK DL+ 
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAG-FNIKALFRKIA 167
            R+V+ ++G+  A + N+ +IETSAK    N+   F  + 
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 163

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  106 bits (265), Expect = 6e-30
 Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 9/164 (5%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G  + GKT+I+ +    +       T           +E + +   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV----GNKTDL 126
            R L   Y +++   + V D   R+      + +  +  E      ++LV     +  + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           ++  +++ + G    R  N     T A +G  +      ++  L
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  105 bits (262), Expect = 2e-29
 Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 7/168 (4%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL-QLWDTAGQ 68
            K++ LGD  VGKTS++ R++ DK+   Y+ATIG DFL+K + ++   V   Q+WDTAGQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKW----VEEVRTERGSDVIIVLVGNKT 124
           ERF+SL  ++ R +   V+VYDV +  SF N   W    +             V++GNK 
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 125 DLVDKRQVSIE-EGEAKAREL-NVMFIETSAKAGFNIKALFRKIAAAL 170
           D  + +++  E   +  A+ L ++    TSAK   N+   F +IA + 
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 170

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  103 bits (258), Expect = 1e-28
 Identities = 35/166 (21%), Positives = 66/166 (39%), Gaps = 9/166 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG    GKT+I+ R    +   T   TIG +       L  + ++L +WD  GQ
Sbjct: 17  ELRILILGLDGAGKTTILYRLQIGEVVTTKP-TIGFNV----ETLSYKNLKLNVWDLGGQ 71

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKTDLV 127
              R     Y  D++  + V D   +      +K +  +  E    D  +++  NK D  
Sbjct: 72  TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQP 131

Query: 128 D---KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
                 +VS E    + ++ +   + +SA  G  I      +   +
Sbjct: 132 GALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 1e-28
 Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 3/160 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++   G   VGK+S++ RF+   F  +Y  T+   +  + +  +     LQ+ DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 61

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLV 127
           +F ++    I      ++VY + SRQS        E++   +G    + I+LVGNK D  
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
             R+V   E EA AR     F+ETSAK   N+K LF+++ 
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 161

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  103 bits (256), Expect = 2e-28
 Identities = 34/166 (20%), Positives = 70/166 (42%), Gaps = 9/166 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG  + GKT+I+ +    +   T      + F  +T+    + V+  +WD  GQ
Sbjct: 12  EMRILMLGLDAAGKTTILYKLKLGQSVTTIP---TVGFNVETVT--YKNVKFNVWDVGGQ 66

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDL- 126
           ++ R L   Y   +   + V D A R       + +  +  +R   D II++  NK DL 
Sbjct: 67  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 126

Query: 127 --VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
             +   ++  + G  + R+ N     + A +G  +      + +  
Sbjct: 127 DAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (253), Expect = 4e-28
 Identities = 55/165 (33%), Positives = 82/165 (49%), Gaps = 4/165 (2%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           A+ KL   G   VGK++++ RF+  +F   Y  T+   +      ++D  V +++ DTAG
Sbjct: 1   AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAG 59

Query: 68  QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDL 126
           QE        ++R     V+VYD+  R SF         +   +   +V ++LVGNK DL
Sbjct: 60  QEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL 118

Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAG-FNIKALFRKIAAAL 170
              RQVS EEGE  A EL   F E SA  G  NI  +F ++   +
Sbjct: 119 DHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 163

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 97.8 bits (242), Expect = 2e-26
 Identities = 28/166 (16%), Positives = 64/166 (38%), Gaps = 9/166 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++K++ +G  + GKT+I+ +F  ++  +T               +     R  +WD  GQ
Sbjct: 15  EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE-----EIVINNTRFLMWDIGGQ 69

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGNKTDL- 126
           E  RS   +Y  ++   ++V D   R+    T + + ++          +++  NK D+ 
Sbjct: 70  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 129

Query: 127 --VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
             +   ++S        ++         A  G  +      + + L
Sbjct: 130 ECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.2 bits (235), Expect = 2e-25
 Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 2/160 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             K+  LG +SVGK+S+  +F+  +F ++Y  TI  +  +K + +  +   LQL DTAGQ
Sbjct: 4   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTAGQ 62

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLV 127
           + +     +Y  D +  ++VY V S +SF        ++        + I+LVGNK DL 
Sbjct: 63  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122

Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
            +R +S EEG+A A   N  F+E+SAK       +FR+I 
Sbjct: 123 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 162

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 94.3 bits (233), Expect = 4e-25
 Identities = 35/163 (21%), Positives = 68/163 (41%), Gaps = 9/163 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG  + GKT+++ +   +   +    T G +  S       +  +L +WD  GQ
Sbjct: 16  EVRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFNIKSVQS----QGFKLNVWDIGGQ 70

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKTDLV 127
            + R    SY  ++ + + V D A R+ F  T + + E+  E + S V +++  NK DL+
Sbjct: 71  RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130

Query: 128 DKRQVSI---EEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
                S           R+        SA  G  ++     + 
Sbjct: 131 TAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC 173

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.3 bits (230), Expect = 9e-25
 Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 3/162 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK++ LG   VGK+++   F   +               +++ ++     L ++D   Q+
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIVVDGEEASLMVYDIWEQD 59

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKW-VEEVRTERGSDVIIVLVGNKTDLVD 128
             R L    +      VIVY V  + SF   ++  V+  R  +  DV I+LVGNK+DLV 
Sbjct: 60  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 119

Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
            R+VS++EG A A   +  FIETSA    N++ALF  +   +
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 161

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 92.4 bits (228), Expect = 2e-24
 Identities = 37/166 (22%), Positives = 64/166 (38%), Gaps = 9/166 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L+ LG  + GKT+I+ +F  +  D     TI          LE R  +L +WD  GQ
Sbjct: 2   ELRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQ 56

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKW-VEEVRTERGSDVIIVLVGNKTDLV 127
           +  RS   +Y   +   + V D A RQ   +  +     +  ER +   +++  NK DL 
Sbjct: 57  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 116

Query: 128 DKRQVSI---EEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
                +           R  +      SA  G ++      +   +
Sbjct: 117 GALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 90.9 bits (224), Expect = 7e-24
 Identities = 34/163 (20%), Positives = 71/163 (43%), Gaps = 8/163 (4%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L  +G Q  GKT+ +      +F+     T+G +       +    V ++LWD  GQ
Sbjct: 2   EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM----RKITKGNVTIKLWDIGGQ 57

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKTDLV 127
            RFRS+   Y R  S  V + D A ++    +   +  +  + +   + ++++GNK DL 
Sbjct: 58  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 117

Query: 128 D---KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
               ++++  +   +  ++  +     S K   NI    + + 
Sbjct: 118 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 160

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.6 bits (223), Expect = 1e-23
 Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 3/165 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
            Y++V +G+Q VGK+++   F       ++    +G D   +T+ ++  +  + L D   
Sbjct: 3   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWE 62

Query: 68  QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTK--WVEEVRTERGSDVIIVLVGNKTD 125
            +     +  +      A ++    + ++         ++  R  +  D+ I+LVGNK+D
Sbjct: 63  NKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 122

Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
           LV  R+VS+ EG A A   +  FIETSA    N+K LF  I   +
Sbjct: 123 LVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.0 bits (219), Expect = 4e-23
 Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 16/168 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KL+FLG  + GKT+++     D+      AT+   +   +  L    ++   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS-DVIIVLVGNKTDLVDK 129
            R L   Y  + +  V + D A  + F      ++ +       DV  V++GNK D  + 
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 130 RQVS----------IEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
              +              +    +  V     S          F+ ++
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.5 bits (218), Expect = 6e-23
 Identities = 36/183 (19%), Positives = 74/183 (40%), Gaps = 12/183 (6%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++ + +L  LGD   GK+S+I RF+   +          +   K M ++ +T  + + + 
Sbjct: 2   SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLE--KTESEQYKKEMLVDGQTHLVLIREE 59

Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTD 125
           AG    +     +         + D  S Q+       +  +R E    + + LVG +  
Sbjct: 60  AGAPDAK--FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 117

Query: 126 LVDK--RQVSIEEGEAKAREL-NVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQE 182
           +     R V      A   ++    + ET A  G N+  +F+++A  +     ++  KQ+
Sbjct: 118 ISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV-----VTLRKQQ 172

Query: 183 DLV 185
            L+
Sbjct: 173 QLL 175

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 86.3 bits (212), Expect = 5e-22
 Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 9/166 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG    GKT+I+ R    +   T               +  + ++ Q+WD  G 
Sbjct: 5   EMRILILGLDGAGKTTILYRLQVGEVVTTIP-----TIGFNVETVTYKNLKFQVWDLGGL 59

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGNKTDLV 127
              R     Y  ++   + V D   R     +   +  +  E      I+V+  NK D+ 
Sbjct: 60  TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 119

Query: 128 DKRQVS---IEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
                S      G    ++      +TSA  G  +      +   L
Sbjct: 120 QAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 78.6 bits (192), Expect = 6e-19
 Identities = 34/178 (19%), Positives = 64/178 (35%), Gaps = 21/178 (11%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             KLVFLG  + GKT+++     D+                +  L    +    +D  G 
Sbjct: 13  TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLH-----PTSEELTIAGMTFTTFDLGGH 67

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWV-EEVRTERGSDVIIVLVGNKTDLV 127
            + R +  +Y+   +  V + D A  +  L + + +   +  E  ++V I+++GNK D  
Sbjct: 68  IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 127

Query: 128 DKRQVS------------IEEGEAKARELN---VMFIETSAKAGFNIKALFRKIAAAL 170
           +                   +G    +ELN   +     S          FR +A  +
Sbjct: 128 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.7 bits (190), Expect = 2e-18
 Identities = 24/196 (12%), Positives = 55/196 (28%), Gaps = 43/196 (21%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KL+ LG    GK++ I +            T GI      +         ++ D  GQ
Sbjct: 2   ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYPFDLQSVIF----RMVDVGGQ 55

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQS-----------FLNTTKWVEEVRTERGSDVII 117
              R        + +  + +  ++                 +   +   +      +  +
Sbjct: 56  RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSV 115

Query: 118 VLVGNKTDLVDKRQVSIEEGE--------------------------AKARELNVMFIET 151
           +L  NK DL++++ +     +                              +  +    T
Sbjct: 116 ILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFT 175

Query: 152 SAKAGFNIKALFRKIA 167
            A    NI+ +F  + 
Sbjct: 176 CATDTENIRFVFAAVK 191

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.5 bits (187), Expect = 4e-18
 Identities = 27/170 (15%), Positives = 53/170 (31%), Gaps = 20/170 (11%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ LG    GK++ + +    +  +    T GI         E + V  ++ D  GQ 
Sbjct: 3   VKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYD----FEIKNVPFKMVDVGGQR 55

Query: 70  RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEE-----------VRTERGSDVIIV 118
             R          +  + +   +     L   +               V     S+V I+
Sbjct: 56  SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 115

Query: 119 LVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA 168
           L  NKTDL++++   +   +               +    +   FR    
Sbjct: 116 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQK--FLVECFRGKRR 163

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.5 bits (177), Expect = 2e-16
 Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 19/140 (13%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           A ++L+ LG    GK++I+ +            T GI         +   V   ++D  G
Sbjct: 5   ATHRLLLLGAGESGKSTIVKQM----RILHVVLTSGIFETK----FQVDKVNFHMFDVGG 56

Query: 68  QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEE-----------VRTERGSDVI 116
           Q   R        D +  + V   +S    +                           + 
Sbjct: 57  QRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTIS 116

Query: 117 IVLVGNKTDLVDKRQVSIEE 136
           ++L  NK DL+ ++ ++ + 
Sbjct: 117 VILFLNKQDLLAEKVLAGKS 136

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.8 bits (172), Expect = 5e-16
 Identities = 28/196 (14%), Positives = 56/196 (28%), Gaps = 46/196 (23%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KL+ LG    GK++I+ +              GI       +   + +  +++D  GQ
Sbjct: 2   EVKLLLLGAGESGKSTIVKQMKIIHEA-----GTGI----VETHFTFKDLHFKMFDVGGQ 52

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-----------TTKWVEEVRTERGSDVII 117
              R          +  +    ++     L               +      +  +D  I
Sbjct: 53  RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 112

Query: 118 VLVGNKTDLVDKRQVSIEEG------------EAKARELNVMFI--------------ET 151
           +L  NK DL +++                   E  A  +   F                T
Sbjct: 113 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFT 172

Query: 152 SAKAGFNIKALFRKIA 167
            A    N++ +F  + 
Sbjct: 173 CATDTKNVQFVFDAVT 188

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.0 bits (157), Expect = 9e-14
 Identities = 23/197 (11%), Positives = 63/197 (31%), Gaps = 18/197 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
            ++F+G    GKT +  R +  ++ +T   +I        +          +     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV----RTERGSDVIIVLVGNKTDL 126
              L+  +   +   V V D A+ Q  +                  +   +++  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 127 VDKRQVSIEEGE--------AKARELNVMFIETSAKAGFNIKA-----LFRKIAAALPGM 173
              +   + + +           R      +++S+ A   +        F ++   +  +
Sbjct: 121 AMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFL 180

Query: 174 ETLSSTKQEDLVDVNLK 190
           E  +   + D    +++
Sbjct: 181 ECSAKGGRGDTGSADIQ 197

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.3 bits (124), Expect = 3e-09
 Identities = 25/176 (14%), Positives = 60/176 (34%), Gaps = 25/176 (14%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +  ++  G Q+ GKTS++T    D    T  +             +     + L D  G 
Sbjct: 3   QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE------PLSAADYDGSGVTLVDFPGH 56

Query: 69  ERFRSLIPSYIRDSSVA-----VIVYDVASRQSFLNTTKWVEEVRTE----RGSDVIIVL 119
            + R  +  Y++  +        +V      +    T +++ ++ +       + + I++
Sbjct: 57  VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 116

Query: 120 VGNKTDLVDKRQVSIEEGEAKARELN---------VMFIETSAKAGFNIKALFRKI 166
             NK++L   R  S  + +A   E+          +  +E         +     +
Sbjct: 117 ACNKSELFTARPPSKIK-DALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVL 171

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 49.3 bits (116), Expect = 3e-08
 Identities = 31/181 (17%), Positives = 60/181 (33%), Gaps = 24/181 (13%)

Query: 13  VFLGDQSVGKTSIITRF------------------MYDKFDNTYQATIGIDFLSKTMYLE 54
           +F G  +VGK+++I R                     +  ++      G  F+       
Sbjct: 4   IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEV 63

Query: 55  DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD 114
              ++ ++            +   + D   A  +     ++  +       +   E    
Sbjct: 64  QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 123

Query: 115 VIIVLVGNKTDLVDKRQVSI----EEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
            I+    NK D +   Q  I    E+ E    E++ +FI  SAK G NI+ L  +I   +
Sbjct: 124 TIVA--VNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 181

Query: 171 P 171
            
Sbjct: 182 R 182

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 48.6 bits (114), Expect = 5e-08
 Identities = 22/160 (13%), Positives = 46/160 (28%), Gaps = 1/160 (0%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V  G  + GK+S++      +         G        ++    + L + DTAG   
Sbjct: 3   KVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 71  FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
               +     + +   I            TT    +        +  +       +V  +
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121

Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
                E    +       I  SA+ G  +  L   +  ++
Sbjct: 122 ADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSM 161

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 48.2 bits (113), Expect = 7e-08
 Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 11/166 (6%)

Query: 13  VFLGDQSVGKTSIITRFM-------YDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
             +G  +VGK++++   +         +   T +   GI    +   +   T  L     
Sbjct: 9   AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD 68

Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTD 125
           A  E     +   + D +  V V D   R       + V          V I+LVGNK D
Sbjct: 69  ALGEFMDQEVYEALADVNAVVWVVD--LRHPPTPEDELVARALKPLVGKVPILLVGNKLD 126

Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
                + +++       E     +  SA     +  L   + A +P
Sbjct: 127 AAKYPEEAMKAYHELLPEAEPRML--SALDERQVAELKADLLALMP 170

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 24/165 (14%), Positives = 53/165 (32%), Gaps = 9/165 (5%)

Query: 14  FLGDQSVGKTSIITRF------MYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
            +G  + GK+S++         +      T    +G+  +S+        +   +   + 
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE 65

Query: 68  QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVE-EVRTERGSDVIIVLVGNKTDL 126
            +        +I  + V + V D A        T   E             ++  NK DL
Sbjct: 66  GKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDL 125

Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
           +++    ++          +  +  SA  G  + AL   + A + 
Sbjct: 126 LEEEA--VKALADALAREGLAVLPVSALTGAGLPALKEALHALVR 168

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 44.0 bits (102), Expect = 2e-06
 Identities = 21/169 (12%), Positives = 49/169 (28%), Gaps = 10/169 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             ++ F G  + GK+S +      K       T G   L     + D    + L      
Sbjct: 16  GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYA 75

Query: 69  ERFRSLIPSY------IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGN 122
           E    +   +        +   ++    V             + +     S++ ++++  
Sbjct: 76  EVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLT 135

Query: 123 KTDLVDKRQVSIEEGEAKAREL----NVMFIETSAKAGFNIKALFRKIA 167
           K D +       +    +   L    +V     S+     +  L +K+ 
Sbjct: 136 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 184

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 43.2 bits (100), Expect = 4e-06
 Identities = 25/166 (15%), Positives = 56/166 (33%), Gaps = 10/166 (6%)

Query: 13  VFLGDQSVGKTSIITRFM-------YDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
             +G  +VGK++++ + +         K   T    +GI        +   T  L + + 
Sbjct: 9   AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK 68

Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTD 125
               R  +   S        VI     +R +  +     +      G   +I+ V    +
Sbjct: 69  RAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNK---LREGKAPVILAVNKVDN 125

Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
           + +K  +        ++   +  +  SA+ G N+  +   +   LP
Sbjct: 126 VQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP 171

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.9 bits (94), Expect = 3e-05
 Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 8/164 (4%)

Query: 13  VFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72
           + +G  +VGK+++  + +  K     +   G+        +E      +L DT G     
Sbjct: 4   LIVGRPNVGKSTLFNKLVKKKKAIV-EDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 62

Query: 73  SLIPSYIRDSSVAVIVYDV-----ASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV 127
             I S         ++ +              T +        R S V  +LV NK + +
Sbjct: 63  QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 122

Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
            + +  ++           + +  SA+   N+  +   I   L 
Sbjct: 123 REFEREVKPELYSLGFGEPIPV--SAEHNINLDTMLETIIKKLE 164

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.8 bits (94), Expect = 4e-05
 Identities = 36/180 (20%), Positives = 61/180 (33%), Gaps = 18/180 (10%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  +G  +VGK+++    +  +         G         +     +    DTAG  R
Sbjct: 10  KVAIVGRPNVGKSTLFNAILNKERALV-SPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 68

Query: 71  FRSLIPSYIRD----------SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
              + P  +                V+V  + + Q      + +  +   RG   ++  V
Sbjct: 69  KSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVV--V 126

Query: 121 GNKTDLVDKRQVSIEEGEAKAREL-----NVMFIETSAKAGFNIKALFRKIAAALPGMET 175
            NK DLV  R+   +E     RE          I TSA  G+NI  +   +  A     T
Sbjct: 127 FNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTT 186

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 39.9 bits (92), Expect = 6e-05
 Identities = 27/180 (15%), Positives = 49/180 (27%), Gaps = 14/180 (7%)

Query: 4   VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-------TIGIDFLSKTMYLEDR 56
           V A+         ++     +I   +                  T        +      
Sbjct: 25  VQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKF 84

Query: 57  TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI 116
             R+   D  G E   + + S       A++V           T +    +         
Sbjct: 85  LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKN 142

Query: 117 IVLVGNKTDLVD-----KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
           +++V NK D+V       +   I++        NV  I  SA    NI +L   I   + 
Sbjct: 143 LIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 202

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 39.7 bits (91), Expect = 7e-05
 Identities = 25/163 (15%), Positives = 47/163 (28%), Gaps = 7/163 (4%)

Query: 21  GKTSIITRFMY-------DKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS 73
           GKT++             DK   + +  I ID       LE+  + L             
Sbjct: 17  GKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAV 76

Query: 74  LIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS 133
           +  + I D ++ V+      +         ++         +         ++     + 
Sbjct: 77  VSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIM 136

Query: 134 IEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
               ++     N   I  SAK GF +  L   I   L   E +
Sbjct: 137 KSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEII 179

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.6 bits (86), Expect = 3e-04
 Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 25/168 (14%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           ++V +G  +VGK++++ R + +          G      +  +  R +  ++ DTAG   
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEEIVIRGILFRIVDTAG--- 57

Query: 71  FRSLIP------------SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIV 118
            RS                 I  + + + V D +      +     +    ER  +   +
Sbjct: 58  VRSETNDLVERLGIERTLQEIEKADIVLFVLDAS------SPLDEEDRKILERIKNKRYL 111

Query: 119 LVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
           +V NK D+V+K      +        +   ++ SA  G  ++ L   I
Sbjct: 112 VVINKVDVVEKINEEEIK---NKLGTDRHMVKISALKGEGLEKLEESI 156

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.8 bits (86), Expect = 4e-04
 Identities = 17/169 (10%), Positives = 48/169 (28%), Gaps = 9/169 (5%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           ++   G  +VGK+S I   +  K      +  G         + D    + +      + 
Sbjct: 25  EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84

Query: 71  FRSLIPSY------IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
            +S   ++         +   +             +   V+     +   + ++++  K 
Sbjct: 85  SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144

Query: 125 DLVDKRQVSIEEGEAKAR---ELNVMFIETSAKAGFNIKALFRKIAAAL 170
           D + K +        +     +     I  S++        +  I   +
Sbjct: 145 DKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (87), Expect = 5e-04
 Identities = 26/177 (14%), Positives = 47/177 (26%), Gaps = 14/177 (7%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSK--TMYLEDRTVRLQLWDTAGQ 68
            +   G+   GK+S I        +    A  G+  ++     Y       +  WD  G 
Sbjct: 58  NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGI 117

Query: 69  ERFRSLIPSYIR--DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
                   +Y+             +++ +   N     + +      +   V    K D 
Sbjct: 118 GSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAIS-MMKKEFYFVR--TKVD- 173

Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 183
                 S    EA          +       N    FR+   A P +  LS+     
Sbjct: 174 ------SDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCH 224

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	208
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.97
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.96
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.93
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.91
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.91
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.91
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.91
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.9
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.9
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.88
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.88
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.88
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.88
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.88
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.88
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.87
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.86
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.86
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.85
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.85
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.84
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.83
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.82
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.81
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.79
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.77
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.76
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.75
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.72
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.72
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.71
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.69
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.61
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.61
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.58
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.47
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.35
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.29
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.26
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.11
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.08
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.98
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.97
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.61
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.49
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.43
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.39
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.32
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.29
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.29
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.25
d1okkd2	207	GTPase domain of the signal recognition particle r	98.14
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.09
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.09
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.06
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.99
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.78
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.69
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.63
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.57
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.57
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.52
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.52
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.5
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.44
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.44
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.33
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.29
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.26
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.25
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.24
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.24
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.22
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.21
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.18
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.06
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.05
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.05
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.04
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.03
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.02
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.01
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.0
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.0
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.97
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.96
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.95
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.95
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.94
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.94
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.92
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.91
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.91
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.9
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.86
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.86
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.86
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.85
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.84
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.83
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.82
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.81
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.8
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.78
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.77
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.73
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.71
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.66
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.64
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.64
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.63
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.61
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.61
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.6
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.59
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.55
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.54
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.51
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.49
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.45
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.45
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.45
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.45
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.43
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.41
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.41
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.23
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.12
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.1
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.09
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.06
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.04
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.03
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.96
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.82
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.79
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.76
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.72
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.72
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.69
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.66
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.65
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.64
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.63
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.62
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.58
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.43
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.41
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.39
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.36
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.36
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.26
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.07
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.02
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.97
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.89
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.88
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.88
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.86
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.85
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.82
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.76
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.62
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.59
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.57
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.55
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.43
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.34
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.29
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.15
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.0
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.98
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.92
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	93.91
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.81
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	93.72
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.71
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.62
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.48
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.46
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.33
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.25
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.17
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.1
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.01
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	92.96
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	92.89
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	92.6
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.54
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	92.44
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.27
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.0
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.88
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	91.81
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	91.4
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	91.38
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.28
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.17
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	90.93
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	90.8
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	90.75
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	89.0
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	88.53
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	88.29
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	88.26
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	87.84
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	87.72
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	87.57
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	87.45
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	86.79
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.46
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	85.79
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	85.71
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.55
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.3
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	84.3
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	83.93
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	83.48
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	81.8
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	81.0

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-36  Score=215.12  Aligned_cols=166  Identities=40%  Similarity=0.732  Sum_probs=157.1

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      +|+++||+|+|.+|||||||+++|..+.+...+.++.+..........++....+.+||++|++.+..++..+++.+|++
T Consensus         1 ~~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   80 (167)
T d1z0ja1           1 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   80 (167)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccce
Confidence            47899999999999999999999999999999999998888888888888888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      |+|||++++++++.+..|+..+......+.|+++|+||.|+.+.+.+...++++++..+++.|+++||++|.||+++|.+
T Consensus        81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~  160 (167)
T d1z0ja1          81 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  160 (167)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            99999999999999999999888887788999999999999888889999999999999999999999999999999999


Q ss_pred             HHHHcC
Q 028466          166 IAAALP  171 (208)
Q Consensus       166 l~~~~~  171 (208)
                      |.+.++
T Consensus       161 l~~~i~  166 (167)
T d1z0ja1         161 ISRRIP  166 (167)
T ss_dssp             HHHHCC
T ss_pred             HHHhCC
Confidence            999884

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-36  Score=214.03  Aligned_cols=164  Identities=84%  Similarity=1.279  Sum_probs=155.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+|+|.+|||||||+++|.++.+...+.++.+..........++..+.+.+||++|++.+...+..++.++|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            69999999999999999999999999999999988888888888888999999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA  169 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (208)
                      |++++.+++.+..|+..+......+.|+++|+||.|+.+.......++.++++.+++.|+++||++|.||+++|++|.+.
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999999999988877889999999999998888888899999999999999999999999999999999999


Q ss_pred             cCCC
Q 028466          170 LPGM  173 (208)
Q Consensus       170 ~~~~  173 (208)
                      ++++
T Consensus       161 l~g~  164 (164)
T d1yzqa1         161 LPGM  164 (164)
T ss_dssp             SCCC
T ss_pred             hCCC
Confidence            8763

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.6e-36  Score=214.60  Aligned_cols=165  Identities=37%  Similarity=0.686  Sum_probs=153.9

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      ..+||+|+|.+|||||||+++|.++.+...+.++.+.+.....+......+.+.+|||||++.+..++..+++++|++|+
T Consensus         4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il   83 (169)
T d3raba_           4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   83 (169)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            46899999999999999999999999988888999888888899999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      |||+++++++..+..|+..+........|+++|+||.|+.+...+...+++.++.+.+++++++||++|.|++++|++|.
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~  163 (169)
T d3raba_          84 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV  163 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHH
Confidence            99999999999999999888777777899999999999988888888999999999999999999999999999999999


Q ss_pred             HHcCC
Q 028466          168 AALPG  172 (208)
Q Consensus       168 ~~~~~  172 (208)
                      +.+.+
T Consensus       164 ~~i~e  168 (169)
T d3raba_         164 DVICE  168 (169)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            98754

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-36  Score=214.25  Aligned_cols=162  Identities=38%  Similarity=0.658  Sum_probs=151.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      .+||+++|.+|||||||+++|+.+.+...+.++.+.+........++..+.+.+||++|++.+......+++++|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            38999999999999999999999999988899999888888898999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466           89 YDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA  168 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (208)
                      ||++++++++.+..|+..+.... .+.|+++|+||+|+.+.+++...++++++.+++++|+++||++|.|++++|++|.+
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccC-CCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence            99999999999999999987665 46899999999999888888899999999999999999999999999999999998


Q ss_pred             HcC
Q 028466          169 ALP  171 (208)
Q Consensus       169 ~~~  171 (208)
                      .+.
T Consensus       161 ~~l  163 (164)
T d1z2aa1         161 KHL  163 (164)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=215.07  Aligned_cols=163  Identities=40%  Similarity=0.704  Sum_probs=147.4

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      .+||+|+|.+|||||||+++|+.+.+.+.+.++.+.+........++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   82 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILV   82 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEE
Confidence            58999999999999999999999999999999999899999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466           89 YDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA  168 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (208)
                      ||++++++|+.+..|+..+........|+++|+||.|+...+++...+++.++.+++++|+++||++|.||+++|.+|.+
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~~  162 (167)
T d1z08a1          83 YDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK  162 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred             EeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHHH
Confidence            99999999999999999887776678899999999999888889999999999999999999999999999999999998


Q ss_pred             HcC
Q 028466          169 ALP  171 (208)
Q Consensus       169 ~~~  171 (208)
                      .+.
T Consensus       163 ~i~  165 (167)
T d1z08a1         163 RMI  165 (167)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            874

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-36  Score=214.72  Aligned_cols=166  Identities=32%  Similarity=0.487  Sum_probs=150.9

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      +.+++||+|+|.+|||||||+++|+.+.+...+.++.. +.....+.+++..+.+.+||++|++.+...+..+++++|++
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            45679999999999999999999999999888777654 55567788899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHH
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFR  164 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~  164 (208)
                      |+|||++++++++.+..|+..+.... ..+.|++||+||.|+...++....+++.++..++++|+++||++|.|++++|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~  161 (173)
T d2fn4a1          82 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFE  161 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             eeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999999887654 36789999999999988888889999999999999999999999999999999


Q ss_pred             HHHHHcCC
Q 028466          165 KIAAALPG  172 (208)
Q Consensus       165 ~l~~~~~~  172 (208)
                      .|++.+.+
T Consensus       162 ~l~~~i~k  169 (173)
T d2fn4a1         162 QLVRAVRK  169 (173)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998744

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-36  Score=212.95  Aligned_cols=163  Identities=40%  Similarity=0.694  Sum_probs=152.8

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      .-+||+|+|.+|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++++|++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~   83 (171)
T d2ew1a1           4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL   83 (171)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEE
Confidence            45899999999999999999999999988888999889999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      |||+++++++..+..|+..+........|+++|+||.|+.+..++...+++.++...+++++++||++|.||+++|.+|.
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~  163 (171)
T d2ew1a1          84 TYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA  163 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             eeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHH
Confidence            99999999999999999998877777899999999999987788888999999999999999999999999999999988


Q ss_pred             HHc
Q 028466          168 AAL  170 (208)
Q Consensus       168 ~~~  170 (208)
                      +.+
T Consensus       164 ~~l  166 (171)
T d2ew1a1         164 CRL  166 (171)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-36  Score=210.25  Aligned_cols=162  Identities=35%  Similarity=0.681  Sum_probs=153.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      .+||+|+|.+|||||||+++|+++.+...+.++.+.++.......++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv   83 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   83 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence            58999999999999999999999999988888888888888999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466           89 YDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA  168 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (208)
                      ||+++.+++..+..|+..+........|+++++||.|+.........+++.++++++++++++||++|.|++++|..|.+
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~  163 (166)
T d1z0fa1          84 YDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK  163 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             eccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998877788999999999999888888888999999999999999999999999999999998


Q ss_pred             Hc
Q 028466          169 AL  170 (208)
Q Consensus       169 ~~  170 (208)
                      .+
T Consensus       164 ~i  165 (166)
T d1z0fa1         164 KI  165 (166)
T ss_dssp             HH
T ss_pred             Hh
Confidence            76

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.2e-36  Score=210.94  Aligned_cols=164  Identities=31%  Similarity=0.508  Sum_probs=149.4

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      ++++||+++|.+|||||||+++++++.+.+.+.++.+.. ....+..++..+.+.+||++|++.+...+..+++++|+++
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~l   80 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDS-YLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   80 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEE-EEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeec-cccccccccccccccccccccccccccchhhhhhhccEEE
Confidence            568999999999999999999999999988888877644 4566778899999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCC-CHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGF-NIKALFR  164 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~v~~~~~  164 (208)
                      +|||++++++|+.+..|+..+.+... .+.|+++|+||+|+...+++..++++++++.++++|+++||+++. ||+++|.
T Consensus        81 lv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~  160 (169)
T d1x1ra1          81 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH  160 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred             EecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHH
Confidence            99999999999999999999876643 578999999999998888888999999999999999999999986 9999999


Q ss_pred             HHHHHcC
Q 028466          165 KIAAALP  171 (208)
Q Consensus       165 ~l~~~~~  171 (208)
                      .|.+.+.
T Consensus       161 ~l~~~i~  167 (169)
T d1x1ra1         161 DLVRVIR  167 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998774

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-36  Score=212.00  Aligned_cols=164  Identities=30%  Similarity=0.486  Sum_probs=147.7

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      +++||+|+|.+|||||||+++|+++.+...+.++.+..+ ......++..+.+.+||++|++.+......+++++|++++
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   79 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   79 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEE
Confidence            368999999999999999999999999888888887444 4456788888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcC--CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      |||++++++++.+..|+..+.....  .+.|+++|+||.|+.+.+++...+++++++.++++|+++||++|.|++++|..
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~  159 (171)
T d2erxa1          80 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  159 (171)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            9999999999999999988876543  67899999999999888888899999999999999999999999999999999


Q ss_pred             HHHHcCC
Q 028466          166 IAAALPG  172 (208)
Q Consensus       166 l~~~~~~  172 (208)
                      |++.+.+
T Consensus       160 l~~~~~~  166 (171)
T d2erxa1         160 LLNLEKR  166 (171)
T ss_dssp             HHHTCCS
T ss_pred             HHHHHHH
Confidence            9988743

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=7.7e-36  Score=210.89  Aligned_cols=164  Identities=34%  Similarity=0.585  Sum_probs=147.1

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      ++.+||+|+|.+|||||||+++|+.+.+...+.++.+.++ ...+.+++..+.+.+||++|++.+..++..+++++|++|
T Consensus         2 ~~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~i   80 (168)
T d1u8za_           2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   80 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeE
Confidence            4678999999999999999999999999888888887655 456778999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||.|+.+.+++...+++++++.+++.|+++||++|.|++++|++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  160 (168)
T d1u8za_          81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            9999999999999999999987654 367899999999999887888899999999999999999999999999999999


Q ss_pred             HHHHcC
Q 028466          166 IAAALP  171 (208)
Q Consensus       166 l~~~~~  171 (208)
                      |++.+.
T Consensus       161 l~~~i~  166 (168)
T d1u8za_         161 LMREIR  166 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-35  Score=208.98  Aligned_cols=165  Identities=41%  Similarity=0.801  Sum_probs=155.8

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      -.+||+|+|.+|||||||+++|+.+.+...+.++.+.+............+.+.+||++|++.+...+..+++++|++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            46899999999999999999999999999989999988888888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      |||++++++++.+..|+..+......+.|+++|+||+|+...+++..++++.++...+++|+++||++|.||+++|..|.
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~  164 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999999887778899999999999988888999999999999999999999999999999999999


Q ss_pred             HHcCC
Q 028466          168 AALPG  172 (208)
Q Consensus       168 ~~~~~  172 (208)
                      +.+.+
T Consensus       165 ~~i~~  169 (170)
T d1r2qa_         165 KKLPK  169 (170)
T ss_dssp             HTSCC
T ss_pred             HHHhh
Confidence            98864

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-36  Score=211.43  Aligned_cols=163  Identities=34%  Similarity=0.566  Sum_probs=149.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      |+++||+|+|.+|||||||+++|+++.+...+.++.+ +........++..+.+.+||++|++.+......+++++|+++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~i   79 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   79 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhccccee
Confidence            6889999999999999999999999999888888776 455667778888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      +|||+++++++..+..|+..+..... .+.|++||+||+|+.+.+.....+++.++.+++++|+++||++|.|++++|+.
T Consensus        80 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~  159 (167)
T d1kaoa_          80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             eeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHH
Confidence            99999999999999999988876543 67899999999999888888899999999999999999999999999999999


Q ss_pred             HHHHc
Q 028466          166 IAAAL  170 (208)
Q Consensus       166 l~~~~  170 (208)
                      |.+.+
T Consensus       160 i~~~i  164 (167)
T d1kaoa_         160 IVRQM  164 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98865

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-35  Score=212.26  Aligned_cols=164  Identities=29%  Similarity=0.404  Sum_probs=144.8

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      |+.+||+|+|.+|||||||+++|+.+.+...+.++.+. ........++..+.+.+||++|++.|...+..+++++|+++
T Consensus         1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
T d2ngra_           1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-NYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL   79 (191)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceee-ecceeEeeCCceeeeeccccccchhhhhhhhhcccccceee
Confidence            56799999999999999999999999999888888874 44556667888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcC-CeEEEeec
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELN-VMFIETSA  153 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S~  153 (208)
                      +|||++++++|+.+..|+.........+.|+++|+||.|+.+.            ..+..+++++++.+++ ..|+++||
T Consensus        80 lv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  159 (191)
T d2ngra_          80 VCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA  159 (191)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCT
T ss_pred             cccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeC
Confidence            9999999999999987666666666678999999999998532            3577889999999975 69999999


Q ss_pred             CCCCCHHHHHHHHHHHcC
Q 028466          154 KAGFNIKALFRKIAAALP  171 (208)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~  171 (208)
                      ++|.||+++|+.+...+.
T Consensus       160 k~~~~V~e~f~~l~~~~~  177 (191)
T d2ngra_         160 LTQKGLKNVFDEAILAAL  177 (191)
T ss_dssp             TTCTTHHHHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHHHHHHh
Confidence            999999999999998774

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-36  Score=210.82  Aligned_cols=163  Identities=34%  Similarity=0.475  Sum_probs=149.6

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+.+||+|+|.+|||||||+++|+++.+...+.++.+.++ ...+.+++..+.+.+||++|.+.+..+...+++++|++|
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            4678999999999999999999999999888888887664 466788999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      +|||++++++++.+..|+..+..... .+.|+++|+||.|+...+++..++++.++.++++.|+++||++|.|++++|..
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            99999999999999999999877654 67899999999999888888899999999999999999999999999999999


Q ss_pred             HHHHc
Q 028466          166 IAAAL  170 (208)
Q Consensus       166 l~~~~  170 (208)
                      |+..+
T Consensus       161 li~~~  165 (167)
T d1xtqa1         161 IILEA  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98765

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=208.97  Aligned_cols=164  Identities=31%  Similarity=0.555  Sum_probs=148.6

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      |+++||+|+|.+|||||||+++|+.+.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..+++++|++|
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeE
Confidence            6789999999999999999999999999988888887544 556678888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc-CCeEEEeecCCCCCHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL-NVMFIETSAKAGFNIKALFR  164 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~v~~~~~  164 (208)
                      +|||++++++++.+..|+..+.... ..+.|++||+||+|+.........++..++.++ ++.|+++||++|.||+++|+
T Consensus        80 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~  159 (167)
T d1c1ya_          80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHH
Confidence            9999999999999999999887654 467899999999999888888888889999885 68999999999999999999


Q ss_pred             HHHHHcC
Q 028466          165 KIAAALP  171 (208)
Q Consensus       165 ~l~~~~~  171 (208)
                      +|.+.+.
T Consensus       160 ~l~~~i~  166 (167)
T d1c1ya_         160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9998874

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-35  Score=208.74  Aligned_cols=160  Identities=31%  Similarity=0.436  Sum_probs=131.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+|+|.+|||||||+++|.+..+... .++. .+.....+..++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPE-AEAA-GHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCc-CCee-eeeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            7999999999999999999998776433 2333 3444567788999999999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA  168 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (208)
                      |++++++++.+..|+..+..... ..+|+++|+||+|+.+.+++...+++.++..++++|+++||++|.|++++|..|.+
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            99999999999999999877654 56899999999999888888899999999999999999999999999999999998


Q ss_pred             HcC
Q 028466          169 ALP  171 (208)
Q Consensus       169 ~~~  171 (208)
                      .+.
T Consensus       160 ~i~  162 (168)
T d2gjsa1         160 QIR  162 (168)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=212.99  Aligned_cols=169  Identities=28%  Similarity=0.431  Sum_probs=148.4

Q ss_pred             CCCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhc
Q 028466            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (208)
Q Consensus         1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   80 (208)
                      |+..+....+||+|+|.+|||||||+++|+.+.+...+.++.+ +.....+...+..+.+.+||++|++.+...+..+++
T Consensus         1 m~~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~   79 (185)
T d2atxa1           1 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP   79 (185)
T ss_dssp             CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred             CCCCCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhccc
Confidence            7777777889999999999999999999999999888888876 445666777888899999999999999999999999


Q ss_pred             cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC------------ccCcCHHHHHHHHHHcC-Ce
Q 028466           81 DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD------------KRQVSIEEGEAKARELN-VM  147 (208)
Q Consensus        81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~  147 (208)
                      ++|++++|||++++++|+.+..|+.........+.|+++|+||.|+.+            .+.+..+++.+++.+++ +.
T Consensus        80 ~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~  159 (185)
T d2atxa1          80 MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC  159 (185)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC
T ss_pred             ccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCE
Confidence            999999999999999999876666555555567899999999999864            34667889999999988 69


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHc
Q 028466          148 FIETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       148 ~~~~S~~~~~~v~~~~~~l~~~~  170 (208)
                      |+++||++|.||+++|+.+.+.+
T Consensus       160 ~~E~SAk~~~gv~e~F~~li~~i  182 (185)
T d2atxa1         160 YVECSALTQKGLKTVFDEAIIAI  182 (185)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEecCCCCcCHHHHHHHHHHHH
Confidence            99999999999999999998876

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-35  Score=214.30  Aligned_cols=166  Identities=41%  Similarity=0.662  Sum_probs=155.1

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      ...+||+|+|.+|||||||+++|+.+.+...+.++.+..+....+.+.+..+.+.+|||||++.+..++..+++++|++|
T Consensus         4 ~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i   83 (194)
T d2bcgy1           4 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   83 (194)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            34599999999999999999999999999898999998888888999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      +|||+++++++..+..|+..+........|+++|+||.|+.+.......+...++...++.++++||++|.|++++|+.|
T Consensus        84 ~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l  163 (194)
T d2bcgy1          84 IVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTM  163 (194)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHH
Confidence            99999999999999999998887777889999999999998888888999999999999999999999999999999999


Q ss_pred             HHHcCC
Q 028466          167 AAALPG  172 (208)
Q Consensus       167 ~~~~~~  172 (208)
                      .+.+.+
T Consensus       164 ~~~i~~  169 (194)
T d2bcgy1         164 ARQIKE  169 (194)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988754

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-35  Score=209.92  Aligned_cols=165  Identities=36%  Similarity=0.702  Sum_probs=150.8

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      .-+||+|+|.+|||||||+++|+++.+...+.++.+.+.....+..++..+.+.+||++|++.|...+..+++++|++|+
T Consensus         3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~   82 (175)
T d2f9la1           3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   82 (175)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence            45899999999999999999999999988888888888888889999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      |||.++++++..+..|+..+......+.|+++|+||+|+.+...........+....+..++++||++|+|++++|++|.
T Consensus        83 v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~  162 (175)
T d2f9la1          83 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL  162 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHH
Confidence            99999999999999999999888888899999999999987777777888888889999999999999999999999999


Q ss_pred             HHcCC
Q 028466          168 AALPG  172 (208)
Q Consensus       168 ~~~~~  172 (208)
                      +.+.+
T Consensus       163 ~~i~~  167 (175)
T d2f9la1         163 TEIYR  167 (175)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88743

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-35  Score=208.21  Aligned_cols=164  Identities=37%  Similarity=0.664  Sum_probs=153.6

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      ..+||+|+|.+|||||||+++|+.+.+...+.++.+.......+..+.....+.+||+||++.+..++..+++.+|++|+
T Consensus         4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (174)
T d2bmea1           4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL   83 (174)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEE
Confidence            45899999999999999999999999998888988888888888888988999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      |||+++++++..+..|+..+......+.|+++|+||+|+....+.....+..++..++++++++||++|.|++++|++|.
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~  163 (174)
T d2bmea1          84 VYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA  163 (174)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHH
Confidence            99999999999999999999888778899999999999988888888899999999999999999999999999999998


Q ss_pred             HHcC
Q 028466          168 AALP  171 (208)
Q Consensus       168 ~~~~  171 (208)
                      +.+.
T Consensus       164 ~~i~  167 (174)
T d2bmea1         164 RKIL  167 (174)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-35  Score=208.86  Aligned_cols=163  Identities=34%  Similarity=0.604  Sum_probs=145.0

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      .++||+|+|.+|||||||+++|+++.+...+.++.+ +.....+..++..+.+.+||++|.+.+......+++++|++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence            469999999999999999999999999888888766 5566777889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      |||.+++++++.+..|+..+..... ...|++||+||.|+...+.+...+++++++.++++|+++||++|.|++++|..|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l  162 (171)
T d2erya1          83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL  162 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHH
Confidence            9999999999999999988766543 578999999999998888888999999999999999999999999999999999


Q ss_pred             HHHcC
Q 028466          167 AAALP  171 (208)
Q Consensus       167 ~~~~~  171 (208)
                      ++.+.
T Consensus       163 ~~~i~  167 (171)
T d2erya1         163 VRVIR  167 (171)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99874

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-35  Score=206.79  Aligned_cols=163  Identities=39%  Similarity=0.734  Sum_probs=148.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      -+||+|+|.+|||||||+++++++.+...+.++.+.+.........+..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv   82 (173)
T d2a5ja1           3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   82 (173)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEE
Confidence            48999999999999999999999999888888888888888888888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466           89 YDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA  168 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (208)
                      ||++++++++.+..|+..+......+.|++||+||+|+...+.....++..++..++++|+++||++|.||+++|..|.+
T Consensus        83 ~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~  162 (173)
T d2a5ja1          83 YDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK  162 (173)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred             EeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999999998877788999999999999887888899999999999999999999999999999999998


Q ss_pred             HcC
Q 028466          169 ALP  171 (208)
Q Consensus       169 ~~~  171 (208)
                      .+.
T Consensus       163 ~i~  165 (173)
T d2a5ja1         163 EIY  165 (173)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-36  Score=211.83  Aligned_cols=163  Identities=31%  Similarity=0.574  Sum_probs=142.3

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      ++||+|+|.+|||||||+++|+.+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999999999999999989899999898888888888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466           89 YDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA  168 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (208)
                      ||++++++++.+..|+..+.... .+.|+++|+||+|+......  .+...++...+++|+++||++|.|++++|++|.+
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~  159 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  159 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHH-CSCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhcc-CCCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999887665 57999999999999655433  3455777888999999999999999999999999


Q ss_pred             HcCCCc
Q 028466          169 ALPGME  174 (208)
Q Consensus       169 ~~~~~~  174 (208)
                      .+...+
T Consensus       160 ~l~~~~  165 (170)
T d1i2ma_         160 KLIGDP  165 (170)
T ss_dssp             HHHTCT
T ss_pred             HHccCC
Confidence            885443

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-34  Score=204.39  Aligned_cols=164  Identities=45%  Similarity=0.805  Sum_probs=152.1

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      ..+||+|+|.+|||||||+++|+++.+.+.+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++|+
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            36899999999999999999999999999989999988888899999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc---cCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK---RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFR  164 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~  164 (208)
                      |||++++++++.+..|+..+........|+++|+||.|+.+.   +++...+++++++..+++|+++||++|.||+++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            999999999999999998888777778999999999998543   56778899999999999999999999999999999


Q ss_pred             HHHHHcC
Q 028466          165 KIAAALP  171 (208)
Q Consensus       165 ~l~~~~~  171 (208)
                      .|.+.++
T Consensus       162 ~i~~~i~  168 (170)
T d1ek0a_         162 GIGEKIP  168 (170)
T ss_dssp             HHHTTSC
T ss_pred             HHHHHhc
Confidence            9998774

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-35  Score=209.27  Aligned_cols=164  Identities=41%  Similarity=0.733  Sum_probs=124.7

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      +-+||+|+|.+|||||||+++|+++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~   84 (173)
T d2fu5c1           5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML   84 (173)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEE
Confidence            45899999999999999999999999988888999989999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA  167 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (208)
                      |||++++.+++.+..|+..+......+.|+++|+||.|+.........++..++...+++|+++||++|+|++++|++|.
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~  164 (173)
T d2fu5c1          85 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA  164 (173)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHH
T ss_pred             EEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999999877778899999999999988778888889999999999999999999999999999999


Q ss_pred             HHcC
Q 028466          168 AALP  171 (208)
Q Consensus       168 ~~~~  171 (208)
                      +.+.
T Consensus       165 ~~i~  168 (173)
T d2fu5c1         165 RDIK  168 (173)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8874

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-34  Score=204.68  Aligned_cols=164  Identities=29%  Similarity=0.521  Sum_probs=147.5

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      |+++||+|+|.+|||||||+++|+++.+...+.++.+..+... +...+..+.+.+||++|++.+......+++.+++++
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~i   79 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc-eeeeceeeeeeeeeccCccccccchhhhhhcccccc
Confidence            5789999999999999999999999999888888888665444 557788889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      +|||++++.+++.+..|+..+..... .++|+++|+||.|+. .+.....++++++..++++|+++||++|+|++++|.+
T Consensus        80 iv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~  158 (166)
T d1ctqa_          80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYT  158 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             eeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccc-cccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHH
Confidence            99999999999999999999887654 578999999999985 4567788999999999999999999999999999999


Q ss_pred             HHHHcCC
Q 028466          166 IAAALPG  172 (208)
Q Consensus       166 l~~~~~~  172 (208)
                      |++.+.+
T Consensus       159 i~~~i~~  165 (166)
T d1ctqa_         159 LVREIRQ  165 (166)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9988743

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=206.20  Aligned_cols=162  Identities=30%  Similarity=0.433  Sum_probs=143.2

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      +.||+|+|.+|||||||+++|..+.+...+.++.+ +........++..+.+.+||++|++.+...+..+++++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            47999999999999999999999999888888876 44556677888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcC-CeEEEeecCC
Q 028466           89 YDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELN-VMFIETSAKA  155 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S~~~  155 (208)
                      ||++++++|+.+..|+..+......+.|++||+||.|+.+.            +.+...+++.++++++ ..|+++||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999999877766666666678999999999998642            4567888999999998 4899999999


Q ss_pred             CCCHHHHHHHHHHHcC
Q 028466          156 GFNIKALFRKIAAALP  171 (208)
Q Consensus       156 ~~~v~~~~~~l~~~~~  171 (208)
                      |.|++++|+.+.+.+.
T Consensus       161 ~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         161 KDGVREVFEMATRAAL  176 (177)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-34  Score=203.43  Aligned_cols=161  Identities=34%  Similarity=0.490  Sum_probs=142.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      ++||+|+|++|||||||+++|+.+.+.+.+.+|.+.++.. .+..++..+.+.+||++|++.+. ....+++++|++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~-~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH-QATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE-EEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccc-cccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            5899999999999999999999999999999998876644 44578888999999999998764 456688999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCC-CHHHHHHHH
Q 028466           89 YDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGF-NIKALFRKI  166 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~v~~~~~~l  166 (208)
                      ||++++++++.+..|+........ .+.|+++|+||+|+.+.+++...++++++.+++++|+++||++|. ||+++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            999999999999988776655443 679999999999998778889999999999999999999999998 599999999


Q ss_pred             HHHcC
Q 028466          167 AAALP  171 (208)
Q Consensus       167 ~~~~~  171 (208)
                      .+.+.
T Consensus       160 ~~~i~  164 (168)
T d2atva1         160 CREVR  164 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-34  Score=203.04  Aligned_cols=170  Identities=39%  Similarity=0.676  Sum_probs=154.8

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      ..++||+|+|.+|||||||+++|.++.+...+.++.+.......+..++..+.+.+|||||++.+..++..+++++|++|
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            46799999999999999999999999998888888888888888889999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK  165 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (208)
                      +|||++++.++..+..|+..+..... ...|+++++||.|.. ..++...+++.+++.+++.++++||++|+|++++|++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~  163 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  163 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCccccccchhhhhhhcccccccceeeEEEeeccccc-cccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998876543 568899999999974 5677888999999999999999999999999999999


Q ss_pred             HHHHcCCCccCC
Q 028466          166 IAAALPGMETLS  177 (208)
Q Consensus       166 l~~~~~~~~~~~  177 (208)
                      |.+.+.+.++.+
T Consensus       164 l~~~l~~~p~l~  175 (177)
T d1x3sa1         164 LVEKIIQTPGLW  175 (177)
T ss_dssp             HHHHHHTSGGGT
T ss_pred             HHHHHccCcccc
Confidence            999987776554

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-34  Score=201.76  Aligned_cols=164  Identities=41%  Similarity=0.714  Sum_probs=142.2

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCC-ccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      ..+||+|+|+++||||||+++|+.+.+... +.++.+.++....+..++..+.+.+|||+|++.+..++..+++++|+++
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i   84 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence            468999999999999999999999987544 4556677888888889999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI  166 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (208)
                      +|||+++++++..+..|+..+........|+++|+||.|+.....+...++..++..++++|+++||++|.|++++|++|
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l  164 (170)
T d2g6ba1          85 LLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAI  164 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            99999999999999999988887777789999999999998888888999999999999999999999999999999999


Q ss_pred             HHHcC
Q 028466          167 AAALP  171 (208)
Q Consensus       167 ~~~~~  171 (208)
                      .+.+.
T Consensus       165 ~~~i~  169 (170)
T d2g6ba1         165 AKELK  169 (170)
T ss_dssp             HHHHH
T ss_pred             HHHcC
Confidence            98763

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-34  Score=206.48  Aligned_cols=164  Identities=38%  Similarity=0.640  Sum_probs=146.6

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECC----------eEEEEEEEecCCchhhccchhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED----------RTVRLQLWDTAGQERFRSLIPS   77 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~D~~G~~~~~~~~~~   77 (208)
                      ..+||+|+|.+|||||||+++|+++.+...+.++.+.++....+..++          ..+.+.+|||+|++.|..++..
T Consensus         4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~   83 (186)
T d2f7sa1           4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA   83 (186)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence            458999999999999999999999999888888888777776665543          3467999999999999999999


Q ss_pred             hhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCC
Q 028466           78 YIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAG  156 (208)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  156 (208)
                      +++++|++|+|||++++++++.+..|+..+.... ....|++||+||.|+...+++...++++++.+++++++++||++|
T Consensus        84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~  163 (186)
T d2f7sa1          84 FFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATG  163 (186)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTT
T ss_pred             HHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCCC
Confidence            9999999999999999999999999988776543 356889999999999888889999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHcC
Q 028466          157 FNIKALFRKIAAALP  171 (208)
Q Consensus       157 ~~v~~~~~~l~~~~~  171 (208)
                      .|++++|++|.+.+.
T Consensus       164 ~~i~e~f~~l~~~i~  178 (186)
T d2f7sa1         164 QNVEKAVETLLDLIM  178 (186)
T ss_dssp             BTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999999874

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.3e-34  Score=202.03  Aligned_cols=162  Identities=40%  Similarity=0.743  Sum_probs=144.2

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      -+||+++|.+|||||||+++|+.+.+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++++|++|+|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            48999999999999999999999999999899999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466           89 YDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA  168 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (208)
                      ||++++++++.+..|+..+........|++++++|.|+. ......++++.++..++++++++||+++.|++++|++|.+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~  160 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhh-hhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence            999999999999999988888887889999999999984 4556688999999999999999999999999999999998


Q ss_pred             HcC
Q 028466          169 ALP  171 (208)
Q Consensus       169 ~~~  171 (208)
                      .+.
T Consensus       161 ~i~  163 (166)
T d1g16a_         161 LIQ  163 (166)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            774

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-34  Score=203.44  Aligned_cols=166  Identities=30%  Similarity=0.447  Sum_probs=144.3

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      .++++||+|+|.+|||||||+++|+.+.+...+.++.+ +.....+..++..+.+.+||++|++.+...+..+++++|++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   80 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhccccccee
Confidence            36789999999999999999999999999888888876 44556677889999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcC-CeEEEee
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELN-VMFIETS  152 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S  152 (208)
                      ++|||++++++|+.+..|+.........+.|++||+||.|+.+.            ......+...++++++ +.|+++|
T Consensus        81 ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~S  160 (183)
T d1mh1a_          81 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (183)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             eeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcC
Confidence            99999999999999877555555555668999999999998543            3455778888888887 7999999


Q ss_pred             cCCCCCHHHHHHHHHHHcCC
Q 028466          153 AKAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       153 ~~~~~~v~~~~~~l~~~~~~  172 (208)
                      |++|.||+++|+.|++.+..
T Consensus       161 Ak~~~~V~e~F~~l~~~il~  180 (183)
T d1mh1a_         161 ALTQRGLKTVFDEAIRAVLC  180 (183)
T ss_dssp             TTTCTTHHHHHHHHHHHHSC
T ss_pred             CCCCcCHHHHHHHHHHHHcC
Confidence            99999999999999988753

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.3e-33  Score=195.61  Aligned_cols=159  Identities=36%  Similarity=0.634  Sum_probs=144.1

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-chhhhhccCCEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDSSVAV   86 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i   86 (208)
                      +.+||+|+|.+|||||||+++|+.+.+...+.++.+................+.+||++|...+.. .+..+++++|++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            468999999999999999999999999988888888888888888999999999999999887765 4677899999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCC---CCCHHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKA---GFNIKAL  162 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~---~~~v~~~  162 (208)
                      +|||++++++++.+..|+..+..... .+.|++||+||.|+.+.+++...++++++.+++++|+++||++   ++||+++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence            99999999999999999999877543 6789999999999988888899999999999999999999987   5699999


Q ss_pred             HHHH
Q 028466          163 FRKI  166 (208)
Q Consensus       163 ~~~l  166 (208)
                      |.+|
T Consensus       161 F~~l  164 (165)
T d1z06a1         161 FMTL  164 (165)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9887

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-33  Score=198.76  Aligned_cols=161  Identities=31%  Similarity=0.478  Sum_probs=138.3

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCC---chhhccchhhhhccCCE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAG---QERFRSLIPSYIRDSSV   84 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G---~~~~~~~~~~~~~~~d~   84 (208)
                      -+||+|+|.+|||||||+++|++..+.. ...++.+.+.....+.+++..+.+.+||+++   ++.+  +...+++++|+
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~   80 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDA   80 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccce
Confidence            4899999999999999999999887643 3445666777788888999999999999775   4444  45667899999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466           85 AVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF  163 (208)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (208)
                      +|+|||++++++++.+..|+..+.... ..++|++||+||+|+.+.+++...++++++..++++|+++||++|.|++++|
T Consensus        81 ~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f  160 (172)
T d2g3ya1          81 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF  160 (172)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             eeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHH
Confidence            999999999999999999998887653 3679999999999998888888999999999999999999999999999999


Q ss_pred             HHHHHHcC
Q 028466          164 RKIAAALP  171 (208)
Q Consensus       164 ~~l~~~~~  171 (208)
                      ..|++.+.
T Consensus       161 ~~l~~~i~  168 (172)
T d2g3ya1         161 EGIVRQVR  168 (172)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998873

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-32  Score=194.57  Aligned_cols=164  Identities=38%  Similarity=0.636  Sum_probs=144.4

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+-+||+|+|.+|||||||+++|+.+.+...+.++.+..........++..+.+.+||++|...+...+..++..+|+++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            34689999999999999999999999999888898888888888888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhcC----CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC-CeEEEeecCCCCCHHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTERG----SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN-VMFIETSAKAGFNIKA  161 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~  161 (208)
                      ++||.+++.+++.+..|+..+.....    .+.|+++|+||.|+. ++++...++++++++.+ ++|+++||+++.||++
T Consensus        84 ~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~-~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e  162 (174)
T d1wmsa_          84 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA  162 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred             EEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchh-hccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHH
Confidence            99999999999999999988765432    468999999999985 46788889999999875 7999999999999999


Q ss_pred             HHHHHHHHcC
Q 028466          162 LFRKIAAALP  171 (208)
Q Consensus       162 ~~~~l~~~~~  171 (208)
                      +|++|.+.+.
T Consensus       163 ~f~~l~~~il  172 (174)
T d1wmsa_         163 AFEEAVRRVL  172 (174)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998763

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8e-33  Score=197.16  Aligned_cols=162  Identities=26%  Similarity=0.438  Sum_probs=141.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (208)
                      ++||+++|.+|||||||+++|+.+.+.+.+.++.. +........++..+.+.+||++|++.+...+..+++++|++|+|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            47999999999999999999999999988888776 44555667788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC------------ccCcCHHHHHHHHHHcCC-eEEEeecCC
Q 028466           89 YDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD------------KRQVSIEEGEAKARELNV-MFIETSAKA  155 (208)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S~~~  155 (208)
                      ||++++++|+.+..|+.........+.|+++|+||.|+..            .+.+..++...++++.+. .|+++||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            9999999999988776666555567899999999999853            345778899999999874 899999999


Q ss_pred             CC-CHHHHHHHHHHHcC
Q 028466          156 GF-NIKALFRKIAAALP  171 (208)
Q Consensus       156 ~~-~v~~~~~~l~~~~~  171 (208)
                      +. +++++|+.+...+.
T Consensus       161 ~~n~i~~~F~~~~~~~l  177 (179)
T d1m7ba_         161 SENSVRDIFHVATLACV  177 (179)
T ss_dssp             BHHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            98 59999999988764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.1e-32  Score=194.94  Aligned_cols=163  Identities=39%  Similarity=0.677  Sum_probs=145.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+|+|.+|||||||+++|+++.+...+.++.+.++........+..+.+.+||++|+..+...+..++..+|++++++
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   82 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF   82 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence            79999999999999999999999999999999998898888888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcC----CCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-cCCeEEEeecCCCCCHHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTERG----SDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-LNVMFIETSAKAGFNIKALFR  164 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~v~~~~~  164 (208)
                      |.+++.++..+..|+..+.....    .+.|+++|+||+|+.+ .+....+...++.. .+++++++||++|.|++++|+
T Consensus        83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~  161 (184)
T d1vg8a_          83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQ  161 (184)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHH
T ss_pred             cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHH
Confidence            99999999999999988876542    4689999999999854 45666666777654 578999999999999999999


Q ss_pred             HHHHHcCCC
Q 028466          165 KIAAALPGM  173 (208)
Q Consensus       165 ~l~~~~~~~  173 (208)
                      +|.+.+.+.
T Consensus       162 ~l~~~i~~~  170 (184)
T d1vg8a_         162 TIARNALKQ  170 (184)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            998877543

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.4e-33  Score=196.36  Aligned_cols=163  Identities=38%  Similarity=0.659  Sum_probs=128.3

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC-CeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      -+||+|+|.+|||||||+++|+++.+...+.++.+........... .....+.+||++|++.+...+..+++.+|++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            4899999999999999999999999988887777666555555433 344678999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhcC----CCCeEEEEEeCCCCcCccC-cCHHHHHHHHHHcC-CeEEEeecCCCCCHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTERG----SDVIIVLVGNKTDLVDKRQ-VSIEEGEAKARELN-VMFIETSAKAGFNIKA  161 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~  161 (208)
                      |||++++.+++.+..|+..+.....    .+.|+++|+||+|+.+.+. ....++++++..++ ++|+++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            9999999999999999998876542    4689999999999976543 66788889999886 7899999999999999


Q ss_pred             HHHHHHHHcC
Q 028466          162 LFRKIAAALP  171 (208)
Q Consensus       162 ~~~~l~~~~~  171 (208)
                      +|++|.+.+.
T Consensus       162 ~f~~l~~~~l  171 (175)
T d1ky3a_         162 AFEEIARSAL  171 (175)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-30  Score=184.59  Aligned_cols=160  Identities=21%  Similarity=0.370  Sum_probs=132.9

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      .++.+||+++|.+|||||||+++++++.+... .++.+. .....+.+++..+.+.+|||+|+..+     .+++++|++
T Consensus         2 ~~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~~-~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~   74 (175)
T d2bmja1           2 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESE-QYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAV   74 (175)
T ss_dssp             CCCEEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSCE-EEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEE
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccce-eEEEEeecCceEEEEEEeeccccccc-----cccccccee
Confidence            36689999999999999999999999988643 444443 34566788999999999999998765     378999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhc---CCCCeEEEEEeCCCCcC--ccCcCHHHHHHHHHHc-CCeEEEeecCCCCCH
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTER---GSDVIIVLVGNKTDLVD--KRQVSIEEGEAKAREL-NVMFIETSAKAGFNI  159 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~--~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~v  159 (208)
                      |+|||++++++|+.+..|+..+....   ..+.|+++|+||.|+..  .+.+...+++.++.+. ++.|+++||+++.|+
T Consensus        75 ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v  154 (175)
T d2bmja1          75 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNV  154 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTH
T ss_pred             EEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCH
Confidence            99999999999999999988876543   35679999999888743  3556678888887654 679999999999999


Q ss_pred             HHHHHHHHHHcCC
Q 028466          160 KALFRKIAAALPG  172 (208)
Q Consensus       160 ~~~~~~l~~~~~~  172 (208)
                      +++|..|.+.+..
T Consensus       155 ~~~F~~l~~~i~~  167 (175)
T d2bmja1         155 DRVFQEVAQKVVT  167 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988743

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=3.3e-31  Score=186.22  Aligned_cols=157  Identities=23%  Similarity=0.351  Sum_probs=129.0

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      +++||+++|++|||||||+++|.++.+...+.+|.+.++.  .+..++  +.+.+||+||++.+...+..++..+|++++
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   76 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVY   76 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee--eeeeee--EEEEEeeccccccccccccccccccchhhc
Confidence            4799999999999999999999999998888887765544  344555  689999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHH-----HHHcCCeEEEeecCCCCCHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAK-----ARELNVMFIETSAKAGFNIKA  161 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v~~  161 (208)
                      |||+++++++.....|+..+.... ..+.|++||+||.|+.....  ..++.+.     +...++.++++||++|+|+++
T Consensus        77 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e  154 (164)
T d1zd9a1          77 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD--EKELIEKMNLSAIQDREICCYSISCKEKDNIDI  154 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             ccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhh--HHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHH
Confidence            999999999999888888776543 36799999999999864332  2222222     223356899999999999999


Q ss_pred             HHHHHHHHc
Q 028466          162 LFRKIAAAL  170 (208)
Q Consensus       162 ~~~~l~~~~  170 (208)
                      +|++|.+.+
T Consensus       155 ~~~~l~~~~  163 (164)
T d1zd9a1         155 TLQWLIQHS  163 (164)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHcc
Confidence            999999865

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=4.2e-30  Score=180.60  Aligned_cols=157  Identities=23%  Similarity=0.356  Sum_probs=122.8

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      +++||+|+|.+|||||||+++|.+..+. ...++.+..  ...+...+  +.+.+||+||++.++..+..+++.+|++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   75 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW   75 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeee--eeeccccc--cceeeeecCcchhhhhHHHhhhhhhhccee
Confidence            5799999999999999999999887664 445555433  33344554  789999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHh-hcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCCCCHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVRT-ERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAGFNIKA  161 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v~~  161 (208)
                      |+|+++..++.....++..+.. ....+.|++||+||.|+.+....  .+......     ...+.++++||++|+|+++
T Consensus        76 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  153 (165)
T d1ksha_          76 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC--NAIQEALELDSIRSHHWRIQGCSAVTGEDLLP  153 (165)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             eeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCH--HHHHHHHHhhhhhcCCCEEEEEECCCCCCHHH
Confidence            9999999999887776665543 33467999999999999654433  22222211     1235789999999999999


Q ss_pred             HHHHHHHHcC
Q 028466          162 LFRKIAAALP  171 (208)
Q Consensus       162 ~~~~l~~~~~  171 (208)
                      +|++|.+.+.
T Consensus       154 ~~~~l~~~i~  163 (165)
T d1ksha_         154 GIDWLLDDIS  163 (165)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998774

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=2.2e-30  Score=183.84  Aligned_cols=159  Identities=23%  Similarity=0.358  Sum_probs=124.7

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (208)
                      .+.+++||+++|.+|||||||+++|.++.+... .++.+  +....+...+  +.+.+||++|++.+...+..+++.+|+
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~--~~~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~   86 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDI   86 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-EEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSE
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-eeeee--eeEEEeccCC--eeEeEeeccccccchhHHHHHhhccce
Confidence            345789999999999999999999999887432 23333  2333444554  689999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHH-----HHcCCeEEEeecCCCCC
Q 028466           85 AVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKA-----RELNVMFIETSAKAGFN  158 (208)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~  158 (208)
                      +|+|||++++.++..+..|+..+.... ..++|++||+||.|+.+..+  .....+..     ....+.++++||++|+|
T Consensus        87 ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~tg~g  164 (176)
T d1fzqa_          87 LIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEG  164 (176)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred             eEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccccc--HHHHHHHHHHHHHHhcCCEEEEEeCCCCCC
Confidence            999999999999999888877766543 36789999999999965433  22222221     22345799999999999


Q ss_pred             HHHHHHHHHHHc
Q 028466          159 IKALFRKIAAAL  170 (208)
Q Consensus       159 v~~~~~~l~~~~  170 (208)
                      ++++|+||.+.+
T Consensus       165 v~e~~~~l~~~i  176 (176)
T d1fzqa_         165 VQDGMNWVCKNV  176 (176)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcC
Confidence            999999998764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=1.5e-29  Score=179.08  Aligned_cols=157  Identities=23%  Similarity=0.378  Sum_probs=122.7

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      -+++||+++|.+|||||||+++|..+.+... .++.+..  ........  +.+.+||+||++.+...+..+++++|++|
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~~~--~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFN--VETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETTEE--EEEEEETT--EEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceeeee--EEEeeccc--eeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            4679999999999999999999998776432 3333332  23333444  68999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhh-cCCCCeEEEEEeCCCCcCccCcCHHHHHHH-----HHHcCCeEEEeecCCCCCHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKTDLVDKRQVSIEEGEAK-----ARELNVMFIETSAKAGFNIK  160 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v~  160 (208)
                      +|+|+++.+++..+..|+..+... ...+.|+++|+||+|+.+...  ..++...     +...++.++++||++|+|++
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~  162 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  162 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccccc--HHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHH
Confidence            999999999999988887776543 346799999999999964322  2222222     22235579999999999999


Q ss_pred             HHHHHHHHHc
Q 028466          161 ALFRKIAAAL  170 (208)
Q Consensus       161 ~~~~~l~~~~  170 (208)
                      ++|++|.+.+
T Consensus       163 e~~~~l~~~~  172 (173)
T d1e0sa_         163 EGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999998865

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.96  E-value=1.2e-29  Score=181.07  Aligned_cols=159  Identities=21%  Similarity=0.351  Sum_probs=120.3

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (208)
                      ..+++||+++|.+|||||||+++|..+.+... .++.+..  .......+  +.+.+||++|++.+...+..++..+|++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~-~~t~~~~--~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEEE-CSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccceE--EEEEeeCC--EEEEEEecccccccchhHHhhhccceeE
Confidence            45789999999999999999999987766432 3443332  23333444  6899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHH-----HHHcCCeEEEeecCCCCCH
Q 028466           86 VIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAK-----ARELNVMFIETSAKAGFNI  159 (208)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v  159 (208)
                      ++|+|++++.++.....|+..+.... ..+.|++||+||+|+.+..  ...++...     +...++.++++||++|+|+
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv  166 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAIKGEGI  166 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred             EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccccc--CHHHHHHHHHHHHHhhCCCEEEEEECCCCCCH
Confidence            99999999999999888877665443 3679999999999995432  23333322     2233467999999999999


Q ss_pred             HHHHHHHHHHcC
Q 028466          160 KALFRKIAAALP  171 (208)
Q Consensus       160 ~~~~~~l~~~~~  171 (208)
                      +++|++|.+.+.
T Consensus       167 ~e~~~~l~~~i~  178 (182)
T d1moza_         167 TEGLDWLIDVIK  178 (182)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998874

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.95  E-value=1e-27  Score=167.00  Aligned_cols=154  Identities=19%  Similarity=0.300  Sum_probs=120.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (208)
                      +||+|+|++|||||||+++|.++++...+.....   ...  ..+...+.+.+||++|...+......++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF---NVE--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC---CEE--EEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceee---EEE--EEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            5899999999999999999998887654333222   112  23344478999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHH-----HHHHHcCCeEEEeecCCCCCHHHHH
Q 028466           90 DVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGE-----AKARELNVMFIETSAKAGFNIKALF  163 (208)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~S~~~~~~v~~~~  163 (208)
                      |.+++.++..+..|+..+.... ....|+++++||.|+.....  ..++.     .++...++.++++||++|+|++++|
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~  153 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeeccccccccc--HHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHH
Confidence            9999999999888877766544 36789999999999865432  22222     2233346789999999999999999


Q ss_pred             HHHHHHc
Q 028466          164 RKIAAAL  170 (208)
Q Consensus       164 ~~l~~~~  170 (208)
                      ++|.+.+
T Consensus       154 ~~l~~~l  160 (160)
T d1r8sa_         154 DWLSNQL  160 (160)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9998764

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.93  E-value=8.1e-26  Score=160.07  Aligned_cols=157  Identities=20%  Similarity=0.296  Sum_probs=116.9

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+++||+|+|.+|||||||+++|.++++.... ++.+  .........+  ..+.+||+++++.+......++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-~~~~--~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG--SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSC--SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccc--eeEEEEeecc--eEEEEeccccccccccchhhhhccceeee
Confidence            56799999999999999999999998875322 2222  2233333444  67999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHH-----HHcCCeEEEeecCCCCCHH
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKA-----RELNVMFIETSAKAGFNIK  160 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~  160 (208)
                      +++|.++..++.....++....... ....|+++|+||.|+.....  ..++....     ...+++++++||++|+|++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc--HHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            9999999998888766655554333 36799999999999854432  22333322     2234689999999999999


Q ss_pred             HHHHHHHHHc
Q 028466          161 ALFRKIAAAL  170 (208)
Q Consensus       161 ~~~~~l~~~~  170 (208)
                      +++++|.+.+
T Consensus       166 e~~~~L~~~l  175 (177)
T d1zj6a1         166 QGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999876

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=1.9e-25  Score=158.52  Aligned_cols=158  Identities=19%  Similarity=0.135  Sum_probs=111.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCCchhh--------ccchhhhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--------RSLIPSYIR   80 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~~   80 (208)
                      -.|+|+|.+|||||||+|+|++.+... ...+..+.+.........+  ..+.+|||||....        ......++.
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~   83 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEALA   83 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhcccccccccc
Confidence            469999999999999999999876532 3334444444444555555  46899999997432        233345578


Q ss_pred             cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC-CeEEEeecCCCCCH
Q 028466           81 DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN-VMFIETSAKAGFNI  159 (208)
Q Consensus        81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v  159 (208)
                      ++|++|+|+|++++...  ...++..+......+.|+++|+||+|+....   ....+.+...++ ..++++||+++.|+
T Consensus        84 ~ad~il~v~D~~~~~~~--~~~~i~~~l~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~~~gi  158 (178)
T d1wf3a1          84 DVNAVVWVVDLRHPPTP--EDELVARALKPLVGKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALDERQV  158 (178)
T ss_dssp             SCSEEEEEEETTSCCCH--HHHHHHHHHGGGTTTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTCHHHH
T ss_pred             cccceeeeechhhhhcc--cccchhhheeccccchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCCCCCH
Confidence            99999999999865332  2333333333444578999999999986532   223334444444 58899999999999


Q ss_pred             HHHHHHHHHHcCCCc
Q 028466          160 KALFRKIAAALPGME  174 (208)
Q Consensus       160 ~~~~~~l~~~~~~~~  174 (208)
                      ++++++|.+.+++.+
T Consensus       159 ~~L~~~i~~~lpe~p  173 (178)
T d1wf3a1         159 AELKADLLALMPEGP  173 (178)
T ss_dssp             HHHHHHHHTTCCBCC
T ss_pred             HHHHHHHHHhCCCCC
Confidence            999999999987543

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.93  E-value=1.2e-24  Score=152.52  Aligned_cols=158  Identities=22%  Similarity=0.341  Sum_probs=120.3

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      +++||+++|.+|||||||+++|+++.+... .++.+  ........++  +.+.+||.+|...+.......+...+++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcce-ecccc--eeeeeeccCc--eEEEEeeccccccccccchhhhhhhhhhhh
Confidence            569999999999999999999999988643 23332  2333333444  679999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHH-hhcCCCCeEEEEEeCCCCcCccCcCHHHHH-----HHHHHcCCeEEEeecCCCCCHHH
Q 028466           88 VYDVASRQSFLNTTKWVEEVR-TERGSDVIIVLVGNKTDLVDKRQVSIEEGE-----AKARELNVMFIETSAKAGFNIKA  161 (208)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~-~~~~~~~~iivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~S~~~~~~v~~  161 (208)
                      ++|+.+..++.....++.... .......|+++++||.|+.....  ..++.     .++...+++++++||++|.|+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e  156 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLDE  156 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccccc--HHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHH
Confidence            999998888877666544443 33346789999999999965432  22222     22333457899999999999999


Q ss_pred             HHHHHHHHcCC
Q 028466          162 LFRKIAAALPG  172 (208)
Q Consensus       162 ~~~~l~~~~~~  172 (208)
                      +|++|.+.+.+
T Consensus       157 ~~~~l~~~l~~  167 (169)
T d1upta_         157 AMEWLVETLKS  167 (169)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999988743

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=1.4e-24  Score=155.68  Aligned_cols=155  Identities=19%  Similarity=0.253  Sum_probs=113.1

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      +++||+++|..|||||||+++|..++++..+.       ....+....  ..+.+||++|++.+...+..+++.++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~~-------~~~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTGI-------VETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCSE-------EEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCccE-------EEEEEEeee--eeeeeeccccccccccchhhcccCCceeee
Confidence            57999999999999999999998777654322       222334444  679999999999999999999999999999


Q ss_pred             EEeCCChhhHH-----------hHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc---------------cCcCHHHHHHHH
Q 028466           88 VYDVASRQSFL-----------NTTKWVEEVRTERGSDVIIVLVGNKTDLVDK---------------RQVSIEEGEAKA  141 (208)
Q Consensus        88 v~d~~~~~s~~-----------~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~---------------~~~~~~~~~~~~  141 (208)
                      |+|+++.+++.           ....|...+........|+++++||.|+...               ......+.....
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            99999876552           2344444444445577899999999997321               111122221111


Q ss_pred             ----HHc-------CCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          142 ----REL-------NVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       142 ----~~~-------~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                          .+.       .+.++++||+++.||+++|+.+.+.+.
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il  192 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII  192 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHH
Confidence                111       245778999999999999999988763

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=4.7e-24  Score=151.44  Aligned_cols=159  Identities=16%  Similarity=0.118  Sum_probs=107.3

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh-------hccchhhhhccCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRDSS   83 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~d   83 (208)
                      .|+|+|.+|||||||+|+|++...........+.+........ .....+.+|||||...       ........+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEV-SEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEEC-SSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeee-cCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            5899999999999999999977653333333333333322222 2234689999999432       1123345578899


Q ss_pred             EEEEEEeCCCh--hhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHH
Q 028466           84 VAVIVYDVASR--QSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKA  161 (208)
Q Consensus        84 ~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~  161 (208)
                      ++++++|....  +.......++...... ..+.|+++|+||+|+.+..+  .....+.+...+.+++.+||++|.|+++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPA-LLRRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHH-HHHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhhhcccccccccchhhhhhhhhccccc-cchhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence            99999998642  2333333333332211 13578999999999965432  3345555566788999999999999999


Q ss_pred             HHHHHHHHcCCC
Q 028466          162 LFRKIAAALPGM  173 (208)
Q Consensus       162 ~~~~l~~~~~~~  173 (208)
                      +++.|.+.+...
T Consensus       159 L~~~i~~~l~~~  170 (180)
T d1udxa2         159 LKEALHALVRST  170 (180)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHhhc
Confidence            999999988544

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.5e-23  Score=146.02  Aligned_cols=151  Identities=22%  Similarity=0.275  Sum_probs=116.0

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   90 (208)
                      ||+++|++|||||||+++|.++.+.. ..++.....  ......+  ..+.+||++|...+......++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS--EELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEE--EEECCTT--CCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeE--EEeccCC--eeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            79999999999999999999988753 344444322  2333333  568899999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHH------------HcCCeEEEeecCCCC
Q 028466           91 VASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR------------ELNVMFIETSAKAGF  157 (208)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~S~~~~~  157 (208)
                      .++..++.....++....... ..+.|++++++|.|+...  ....++.+...            ...+.++++||++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA--VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSC--CCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEecccccccc--CCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            999988888777666665433 367899999999998543  23333333321            113468999999999


Q ss_pred             CHHHHHHHHHH
Q 028466          158 NIKALFRKIAA  168 (208)
Q Consensus       158 ~v~~~~~~l~~  168 (208)
                      |++++|+||.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999975

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=6.1e-25  Score=158.26  Aligned_cols=158  Identities=18%  Similarity=0.183  Sum_probs=120.8

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      +++||+++|..|||||||+++|..+.+  .+.||.+.+..  .+...  .+.+.+||++|++.+...+..+++.++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~--~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEY--PFDLQ--SVIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEE--EEECS--SCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEE--EEecc--ceeeeeccccccccccccccccccccceeeE
Confidence            579999999999999999999998877  35677775543  33333  3679999999999999999999999999999


Q ss_pred             EEeCCChh-----------hHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc----------------CcCHHHHHHH
Q 028466           88 VYDVASRQ-----------SFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR----------------QVSIEEGEAK  140 (208)
Q Consensus        88 v~d~~~~~-----------s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----------------~~~~~~~~~~  140 (208)
                      ++|+++.+           .++....|...+......+.|+++++||.|+.+..                +........+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            99998754           34446667777766666789999999999984321                1222222222


Q ss_pred             HH----Hc------CCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          141 AR----EL------NVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       141 ~~----~~------~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      ..    +.      .+.++++||+++.|++++|+.|.+.+.
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~  195 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL  195 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHH
Confidence            22    11      245789999999999999999988774

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=3.2e-24  Score=149.56  Aligned_cols=152  Identities=19%  Similarity=0.227  Sum_probs=110.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc--------chhhhh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYI   79 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~   79 (208)
                      .+||+++|.+|||||||+|+|++.+.. ....++.+.+.....+...+  ..+.+||+||......        ....++
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   78 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEI   78 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHH
Confidence            379999999999999999999987654 23344455455555556666  5688999999543222        234557


Q ss_pred             ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCH
Q 028466           80 RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNI  159 (208)
Q Consensus        80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v  159 (208)
                      ..+|++++++|..++..+.....|...+. ....+.|+++|+||+|+.++.....       ...+.+++++||+++.|+
T Consensus        79 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~iilv~NK~Dl~~~~~~~~-------~~~~~~~~~iSAk~~~gi  150 (161)
T d2gj8a1          79 EQADRVLFMVDGTTTDAVDPAEIWPEFIA-RLPAKLPITVVRNKADITGETLGMS-------EVNGHALIRLSARTGEGV  150 (161)
T ss_dssp             HTCSEEEEEEETTTCCCCSHHHHCHHHHH-HSCTTCCEEEEEECHHHHCCCCEEE-------EETTEEEEECCTTTCTTH
T ss_pred             Hhccccceeeccccccchhhhhhhhhhhh-hcccccceeeccchhhhhhhHHHHH-------HhCCCcEEEEECCCCCCH
Confidence            89999999999998766666665544444 3345789999999999865432110       112468999999999999


Q ss_pred             HHHHHHHHHHc
Q 028466          160 KALFRKIAAAL  170 (208)
Q Consensus       160 ~~~~~~l~~~~  170 (208)
                      ++++++|.+.+
T Consensus       151 ~~L~~~l~~~l  161 (161)
T d2gj8a1         151 DVLRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhhC
Confidence            99999998764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.90  E-value=1.1e-23  Score=149.43  Aligned_cols=162  Identities=20%  Similarity=0.206  Sum_probs=108.5

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCC-------ccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhh
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY   78 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~   78 (208)
                      +++.++|+++|.+|+|||||+|+|++......       .....+.+.....+...+  ..+.++|+||+..|.......
T Consensus         2 ~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~   79 (179)
T d1wb1a4           2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA   79 (179)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhh
Confidence            46789999999999999999999986432211       111222223333334444  568999999999999999999


Q ss_pred             hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC--HHHHHHHHHHc----CCeEEEee
Q 028466           79 IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS--IEEGEAKAREL----NVMFIETS  152 (208)
Q Consensus        79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--~~~~~~~~~~~----~~~~~~~S  152 (208)
                      +..+|++++|+|+++...... .+.+..+. .  .+.|+++|+||+|+....+..  ....+......    +.+++++|
T Consensus        80 l~~~d~~ilv~d~~~g~~~~~-~~~~~~~~-~--~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iS  155 (179)
T d1wb1a4          80 ADIIDLALIVVDAKEGPKTQT-GEHMLILD-H--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPIS  155 (179)
T ss_dssp             TTSCCEEEEEEETTTCSCHHH-HHHHHHHH-H--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECC
T ss_pred             hhhccccccccccccccchhh-hhhhhhhh-h--cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEE
Confidence            999999999999986422221 22222222 2  358999999999996543211  11222222221    35899999


Q ss_pred             cCCCCCHHHHHHHHHHHcCCC
Q 028466          153 AKAGFNIKALFRKIAAALPGM  173 (208)
Q Consensus       153 ~~~~~~v~~~~~~l~~~~~~~  173 (208)
                      |++|+|++++++.|.+.+++.
T Consensus       156 A~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         156 AKTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHS
T ss_pred             ccCCcCHHHHHHHHHhcCCcc
Confidence            999999999999999988543

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.90  E-value=1.4e-22  Score=143.82  Aligned_cols=157  Identities=22%  Similarity=0.272  Sum_probs=112.9

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (208)
                      .+..||+++|.+|||||||+++|.++.+... .++.+.  ....+..++  ..+.+||+.++..+......+....++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHP--TSEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCC--SCEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcce-eccccc--ceeEEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            5679999999999999999999998887543 233332  233344555  46889999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHh-hcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc-----------------CCeE
Q 028466           87 IVYDVASRQSFLNTTKWVEEVRT-ERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL-----------------NVMF  148 (208)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-----------------~~~~  148 (208)
                      +++|+++...+.....++..... ....+.|+++++||.|+...  ....++.......                 ++.+
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc--CCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            99999998888876554444433 33467999999999998543  2333444333221                 3468


Q ss_pred             EEeecCCCCCHHHHHHHHHHHc
Q 028466          149 IETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       149 ~~~S~~~~~~v~~~~~~l~~~~  170 (208)
                      +++||++|+|++++|+||.+.+
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999999865

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.2e-22  Score=146.14  Aligned_cols=156  Identities=19%  Similarity=0.239  Sum_probs=108.2

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      +.+||+++|.+|||||||+++|.   +...+.||.++..  ..+.+.+  ..+.+||++|++.+...+..+++.++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~--~~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~   73 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILF   73 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE--EEEeeee--eeeeeecccceeeecccccccccccceeEE
Confidence            46899999999999999999993   4455677777543  3455555  679999999999999999999999999999


Q ss_pred             EEeCCChh----------hHHhHHHHHHHHHh-hcCCCCeEEEEEeCCCCcCc----------------cCcCHHHHHHH
Q 028466           88 VYDVASRQ----------SFLNTTKWVEEVRT-ERGSDVIIVLVGNKTDLVDK----------------RQVSIEEGEAK  140 (208)
Q Consensus        88 v~d~~~~~----------s~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~----------------~~~~~~~~~~~  140 (208)
                      ++|.++..          .++....++..+.. ....+.|++|++||.|+.++                .......+.++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  153 (200)
T d1zcba2          74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  153 (200)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence            99998743          23444444444433 33468999999999998432                11122333333


Q ss_pred             HHHc-----------CCeEEEeecCCCCCHHHHHHHHHHHc
Q 028466          141 AREL-----------NVMFIETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       141 ~~~~-----------~~~~~~~S~~~~~~v~~~~~~l~~~~  170 (208)
                      ....           .+.++++||+++.||+++|+.+.+.+
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i  194 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI  194 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHH
Confidence            3321           24567899999999999999988776

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=5.8e-22  Score=141.16  Aligned_cols=158  Identities=23%  Similarity=0.258  Sum_probs=106.6

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh------------ccc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF------------RSL   74 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------------~~~   74 (208)
                      ..+||+|+|.+|+|||||+|+|++.... ....+..+.......+..++  ..+.++|+||....            ...
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccchhHH
Confidence            3599999999999999999999987652 12233444444445566666  45888899996432            223


Q ss_pred             hhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc-----CCeEE
Q 028466           75 IPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL-----NVMFI  149 (208)
Q Consensus        75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~  149 (208)
                      ....++.+|++++|+|++.+.. .....++..+..   .+.|+|+|+||+|+....+....+..+...+.     .++++
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~-~~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGIT-RQDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  160 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhcCCEEEEeecccccch-hhHHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEE
Confidence            4455788999999999985422 222333333332   35899999999998766555555554444432     35799


Q ss_pred             EeecCCCCCHHHHHHHHHHHcC
Q 028466          150 ETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       150 ~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      ++||++|.|+++++++|.+.+.
T Consensus       161 ~vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         161 FTSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999987763

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=2.2e-22  Score=139.98  Aligned_cols=149  Identities=21%  Similarity=0.273  Sum_probs=103.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc---------cchhhhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---------SLIPSYI   79 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~   79 (208)
                      +||+++|.+|+|||||+|+|++.+.. ....+..+.......+...+  ..+.+|||||.....         ......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            68999999999999999999976643 33344455455555566666  568899999943211         1223346


Q ss_pred             ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCH
Q 028466           80 RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNI  159 (208)
Q Consensus        80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v  159 (208)
                      ..+|++++|+|++++.......-+ ..+     ...++++++||.|+.+..  ...+.... ...+.+++++||++|+|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~-~~~-----~~~~~i~~~~k~d~~~~~--~~~~~~~~-~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKIL-ERI-----KNKRYLVVINKVDVVEKI--NEEEIKNK-LGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHH-HHH-----TTSSEEEEEEECSSCCCC--CHHHHHHH-HTCSTTEEEEEGGGTCCH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhh-hhc-----ccccceeeeeeccccchh--hhHHHHHH-hCCCCcEEEEECCCCCCH
Confidence            789999999999987554432221 111     347789999999996543  23333222 233568999999999999


Q ss_pred             HHHHHHHHHH
Q 028466          160 KALFRKIAAA  169 (208)
Q Consensus       160 ~~~~~~l~~~  169 (208)
                      ++++++|.+.
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999998764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=1.3e-22  Score=144.44  Aligned_cols=162  Identities=17%  Similarity=0.094  Sum_probs=103.3

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-------chhhhhccCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPSYIRDSS   83 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~d   83 (208)
                      +|+|+|.+|||||||+|+|++........+..+.+.......+.+. ..+.+|||||......       .....+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC-cEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            6899999999999999999877654333333343333333333332 2688999999643211       1223356788


Q ss_pred             EEEEEEeCCChhhHHh--HHHHH---HHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc--CCeEEEeecCCC
Q 028466           84 VAVIVYDVASRQSFLN--TTKWV---EEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL--NVMFIETSAKAG  156 (208)
Q Consensus        84 ~~i~v~d~~~~~s~~~--~~~~~---~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~S~~~~  156 (208)
                      .++++++.........  ...+.   .........++|+++|+||+|+.+..    ...+.+...+  +.+++.+||++|
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v~~iSA~~g  157 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTR  157 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH----HHHHHHHHHhccCCcEEEEECCCC
Confidence            9988887764322211  11111   11111222468999999999996532    2233333333  578999999999


Q ss_pred             CCHHHHHHHHHHHcCCCccCC
Q 028466          157 FNIKALFRKIAAALPGMETLS  177 (208)
Q Consensus       157 ~~v~~~~~~l~~~~~~~~~~~  177 (208)
                      .|++++++.|.+.+.+.+...
T Consensus       158 ~Gi~~L~~~i~~~L~~~p~~~  178 (185)
T d1lnza2         158 EGLRELLFEVANQLENTPEFP  178 (185)
T ss_dssp             STTHHHHHHHHHHHTSCCCCC
T ss_pred             CCHHHHHHHHHHhhhhCCCCC
Confidence            999999999999987655443

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=2.9e-22  Score=140.94  Aligned_cols=154  Identities=19%  Similarity=0.199  Sum_probs=97.8

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchh---------hccchhhhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSYIR   80 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~   80 (208)
                      +|+|+|.+|||||||+|+|++.... ....+..+.......+....  ..+.+||++|...         +......++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            6899999999999999999976653 22233333333344444444  5789999999422         2223445578


Q ss_pred             cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466           81 DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK  160 (208)
Q Consensus        81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (208)
                      .+|+++++.+.+...... ...++..+..   .++|+++|+||+|+.++.+  .....++.+.....++++||++|.|++
T Consensus        80 ~ad~i~~~~~~~~~~~~~-~~~~~~~l~~---~~~pviiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~i~iSAk~g~gid  153 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKE-DESLADFLRK---STVDTILVANKAENLREFE--REVKPELYSLGFGEPIPVSAEHNINLD  153 (171)
T ss_dssp             TCSEEEEEEETTTCCCHH-HHHHHHHHHH---HTCCEEEEEESCCSHHHHH--HHTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred             cCcEEEEeeccccccccc-cccccccccc---ccccccccchhhhhhhhhh--hHHHHHHHhcCCCCeEEEecCCCCCHH
Confidence            999999999987543222 2333444443   2588999999999864321  112222222233578999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028466          161 ALFRKIAAALPG  172 (208)
Q Consensus       161 ~~~~~l~~~~~~  172 (208)
                      +++++|.+.+++
T Consensus       154 ~L~~~i~~~l~e  165 (171)
T d1mkya1         154 TMLETIIKKLEE  165 (171)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCC
Confidence            999999998754

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=1.4e-22  Score=144.07  Aligned_cols=150  Identities=22%  Similarity=0.288  Sum_probs=98.4

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh---------------hccch
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------------FRSLI   75 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------------~~~~~   75 (208)
                      .|+|+|.+|||||||+|+|++........++.|.+.  ..+...+    +.+|||||...               +....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~--~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecc--ccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            589999999999999999998876544455444443  2333433    67899999521               11223


Q ss_pred             hhhhccCCEEEEEEeCCChhhHHhH----------HHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC
Q 028466           76 PSYIRDSSVAVIVYDVASRQSFLNT----------TKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN  145 (208)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~s~~~~----------~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~  145 (208)
                      ....+.+|++++|+|+..+......          ...+..+.   ..+.|+++|+||+|+.+..+.   ........+.
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~---~~~~p~iiv~NK~D~~~~~~~---~~~~~~~~~~  149 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR---ELDIPTIVAVNKLDKIKNVQE---VINFLAEKFE  149 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH---HTTCCEEEEEECGGGCSCHHH---HHHHHHHHHT
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHH---HcCCCEEEEEeeeehhhhHHH---HHHHHHHHhc
Confidence            3446789999999999754222111          11222222   246899999999998654322   1122222221


Q ss_pred             -------CeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466          146 -------VMFIETSAKAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       146 -------~~~~~~S~~~~~~v~~~~~~l~~~~~~  172 (208)
                             ..++++||++|.|+++++++|.+.+++
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence                   248899999999999999999988753

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.87  E-value=1e-21  Score=141.03  Aligned_cols=163  Identities=20%  Similarity=0.197  Sum_probs=109.8

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCC---CCccceeeeeeeEEEEEE---------------------CCeEEEEEE
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKTMYL---------------------EDRTVRLQL   62 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~i   62 (208)
                      -..++|+++|+.++|||||+++|++....   .......+.+........                     ......+++
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            45789999999999999999999864321   111222221111111101                     112356899


Q ss_pred             EecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc--CHHHHHHH
Q 028466           63 WDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV--SIEEGEAK  140 (208)
Q Consensus        63 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~  140 (208)
                      +||||+..|.....+.+..+|++++|+|+.+........+.+..+....  ..+++++.||+|+.+..+.  ....+..+
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~~~  160 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKEF  160 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999986422233334444343332  2457888999998754321  13334444


Q ss_pred             HHHc---CCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          141 AREL---NVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       141 ~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      ...+   .++++++||++|+|++++++.|.+.++
T Consensus       161 ~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         161 IEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             hccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence            4443   368999999999999999999998774

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.86  E-value=1.8e-21  Score=139.20  Aligned_cols=158  Identities=15%  Similarity=0.098  Sum_probs=111.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcC----------------CCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYD----------------KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   72 (208)
                      .++|+++|+.++|||||+++|++.                ....+..+.++++.....+.+.+  ..+.++||||+..|.
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~--~~~~~iDtPGh~~f~   80 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA--RHYAHTDCPGHADYV   80 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS--CEEEEEECSSHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEece--eeEEeecCcchHHHH
Confidence            489999999999999999999741                12233444555555444554444  579999999999999


Q ss_pred             cchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc---CHHHHHHHHHHcC----
Q 028466           73 SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV---SIEEGEAKARELN----  145 (208)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~---~~~~~~~~~~~~~----  145 (208)
                      ....+.+..+|++|+|+|+.+.- ..+..+.+..+....  ..|+||++||+|+.++.+.   -..+++.++..++    
T Consensus        81 ~~~~~~~~~aD~allVVda~~G~-~~QT~~~~~~a~~~~--~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~  157 (196)
T d1d2ea3          81 KNMITGTAPLDGCILVVAANDGP-MPQTREHLLLARQIG--VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (196)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCS-CHHHHHHHHHHHHTT--CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHhhcCeEEEEEEcCCCC-chhHHHHHHHHHHhc--CCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcc
Confidence            99999999999999999998642 222333333333322  3578888999998754321   1223444444443    


Q ss_pred             -CeEEEeecCCC----------CCHHHHHHHHHHHcC
Q 028466          146 -VMFIETSAKAG----------FNIKALFRKIAAALP  171 (208)
Q Consensus       146 -~~~~~~S~~~~----------~~v~~~~~~l~~~~~  171 (208)
                       ++++++|+++|          .++.++++.|.+.++
T Consensus       158 ~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             cCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence             57999999988          588999998888765

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.86  E-value=3.7e-22  Score=146.53  Aligned_cols=156  Identities=19%  Similarity=0.197  Sum_probs=99.8

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEE----------------EECCeEEEEEEEecCCchhhccc
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTM----------------YLEDRTVRLQLWDTAGQERFRSL   74 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~i~D~~G~~~~~~~   74 (208)
                      .|+|+|++++|||||+++|++...........+........                .+......+.++|||||..|...
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~   86 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL   86 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred             EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence            49999999999999999998643221111111111111111                11223346899999999999998


Q ss_pred             hhhhhccCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCH-------------------
Q 028466           75 IPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSI-------------------  134 (208)
Q Consensus        75 ~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~-------------------  134 (208)
                      ....+..+|++|+|+|+.+.  +... ...+..+..   .+.|+|+|+||+|+........                   
T Consensus        87 ~~~~~~~~D~~ilVvda~~g--~~~~~~~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~  161 (227)
T d1g7sa4          87 RKRGGALADLAILIVDINEG--FKPQTQEALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKL  161 (227)
T ss_dssp             BCSSSBSCSEEEEEEETTTC--CCHHHHHHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHH
T ss_pred             chhcccccceEEEEEecccC--cccchhHHHHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHH
Confidence            88889999999999999853  2222 222233322   3589999999999865322110                   


Q ss_pred             -HHHHHHHH---Hc---------------CCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          135 -EEGEAKAR---EL---------------NVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       135 -~~~~~~~~---~~---------------~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                       ........   ..               .++++++||.+|.|++++++.|.....
T Consensus       162 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~  217 (227)
T d1g7sa4         162 DTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (227)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence             00111111   10               136899999999999999999987653

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=2.1e-20  Score=135.21  Aligned_cols=117  Identities=22%  Similarity=0.314  Sum_probs=86.0

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc-cchhhhhccCCEEEEEE
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSSVAVIVY   89 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~v~   89 (208)
                      +|+|+|++|||||||+++|+++.+... .++.+.+.....+ .+.....+.+||++|++.+. ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            689999999999999999999887654 3455444433332 23445689999999999885 46677889999999999


Q ss_pred             eCCChhhH-HhHHHHHHHHHh-h--cCCCCeEEEEEeCCCCcCc
Q 028466           90 DVASRQSF-LNTTKWVEEVRT-E--RGSDVIIVLVGNKTDLVDK  129 (208)
Q Consensus        90 d~~~~~s~-~~~~~~~~~~~~-~--~~~~~~iivv~nK~D~~~~  129 (208)
                      |+++..++ ....+++..+.. .  ....+|++||+||+|+...
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            99987653 444444444332 2  2356899999999999654

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.85  E-value=3.3e-20  Score=134.01  Aligned_cols=162  Identities=18%  Similarity=0.157  Sum_probs=104.2

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCC---CCccceeeeeeeEEEEE--E------------------------CCeEEE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKTMY--L------------------------EDRTVR   59 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~--~------------------------~~~~~~   59 (208)
                      .++|+++|+.++|||||+++|++....   .........+.......  .                        ......
T Consensus         8 ~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   87 (205)
T d2qn6a3           8 EVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRR   87 (205)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEE
T ss_pred             CeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceEE
Confidence            489999999999999999999863221   00011100011000000  0                        112346


Q ss_pred             EEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC--HHHH
Q 028466           60 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS--IEEG  137 (208)
Q Consensus        60 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--~~~~  137 (208)
                      +.++|+|||..|.......+..+|++|+|+|+.+.-...+.++.+..+... + -.|+||++||+|+.+..+..  ....
T Consensus        88 ~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~-~-i~~iIV~vNK~Dl~~~~~~~~~~~~~  165 (205)
T d2qn6a3          88 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-G-VKNLIIVQNKVDVVSKEEALSQYRQI  165 (205)
T ss_dssp             EEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-T-CCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             EEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc-C-CceeeeccccCCCccchHHHHHHHHH
Confidence            899999999999999999999999999999998641111223333333222 1 25788889999997543221  2222


Q ss_pred             HHHHHHc---CCeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466          138 EAKAREL---NVMFIETSAKAGFNIKALFRKIAAALPG  172 (208)
Q Consensus       138 ~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~~~~  172 (208)
                      ..+....   +++++++||++|.|++++++.|.++++.
T Consensus       166 ~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         166 KQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence            3333332   3689999999999999999999998864

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=5e-21  Score=139.89  Aligned_cols=156  Identities=19%  Similarity=0.247  Sum_probs=111.3

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   87 (208)
                      +.+||+++|..|||||||++++..+++    .||.++  ....+.+++  +.+.+||++|++.++..+..++.+++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~--~~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGI--FETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSC--EEEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCe--EEEEEEECc--EEEEEEecCccceeccchhhhcccccceEE
Confidence            468999999999999999999976654    355553  334455665  679999999999999999999999999999


Q ss_pred             EEeCCChh----------hHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCccC----c--------------------
Q 028466           88 VYDVASRQ----------SFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ----V--------------------  132 (208)
Q Consensus        88 v~d~~~~~----------s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----~--------------------  132 (208)
                      ++|.++..          .+.+. ..|...+......+.|++|++||+|+.+++.    .                    
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~  156 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP  156 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCC
T ss_pred             EEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccc
Confidence            99998532          23333 3333333333346799999999999853210    0                    


Q ss_pred             ------CHHHHHHHHHH-----c--------CCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          133 ------SIEEGEAKARE-----L--------NVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       133 ------~~~~~~~~~~~-----~--------~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                            ...++..+...     .        .+..+.+||.++.+++.+|+.+.+.+.
T Consensus       157 ~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~  214 (221)
T d1azta2         157 EPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQ  214 (221)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHH
T ss_pred             cCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHH
Confidence                  01222222211     1        234678999999999999988877664

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=3.9e-20  Score=132.59  Aligned_cols=155  Identities=14%  Similarity=0.153  Sum_probs=91.4

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh----------h---ccch
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------F---RSLI   75 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~---~~~~   75 (208)
                      -.+|+|+|.+|||||||+|+|++.+.........+.+..........   .+.+.|++|...          .   ....
T Consensus        23 ~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~   99 (195)
T d1svia_          23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETY   99 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHhhh
Confidence            34899999999999999999998654222222222222222232332   244566666321          1   1122


Q ss_pred             hhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH----cCCeEEEe
Q 028466           76 PSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE----LNVMFIET  151 (208)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~  151 (208)
                      ...+..+|++++|+|++.+.. .....++..+..   .+.|+++|+||+|+.+..+.. ...+.....    .+.+++.+
T Consensus       100 ~~~~~~~~~vi~viD~~~~~~-~~~~~~~~~l~~---~~~piivv~NK~D~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  174 (195)
T d1svia_         100 ITTREELKAVVQIVDLRHAPS-NDDVQMYEFLKY---YGIPVIVIATKADKIPKGKWD-KHAKVVRQTLNIDPEDELILF  174 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHH---TTCCEEEEEECGGGSCGGGHH-HHHHHHHHHHTCCTTSEEEEC
T ss_pred             hccccchhhhhhhhhcccccc-cccccccccccc---ccCcceechhhccccCHHHHH-HHHHHHHHHhcccCCCCEEEE
Confidence            233456799999999975422 112333343433   358999999999986543321 122222222    34689999


Q ss_pred             ecCCCCCHHHHHHHHHHHcC
Q 028466          152 SAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       152 S~~~~~~v~~~~~~l~~~~~  171 (208)
                      ||+++.|+++++++|.+.+.
T Consensus       175 SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         175 SSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             CTTTCTTHHHHHHHHHHHHT
T ss_pred             eCCCCCCHHHHHHHHHHHhC
Confidence            99999999999999998873

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=3e-20  Score=133.84  Aligned_cols=141  Identities=20%  Similarity=0.152  Sum_probs=95.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcC-----------------CCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYD-----------------KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (208)
                      .++|+++|+.++|||||+++|+..                 ..+++..+..+++.....+.+++  .+++|+||||+..|
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~df   80 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHADY   80 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGGG
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchhh
Confidence            489999999999999999999621                 11122233556666666666666  56899999999999


Q ss_pred             ccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccCc---CHHHHHHHHHHcC--
Q 028466           72 RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQV---SIEEGEAKARELN--  145 (208)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~---~~~~~~~~~~~~~--  145 (208)
                      .....+.+..+|++|+|+|+.+.-..+ ..+.+..+...   ++| ++|++||+|+.+..+.   ...+++.+...++  
T Consensus        81 ~~~~~~~~~~aD~avlVvda~~Gv~~q-t~~~~~~~~~~---gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~  156 (204)
T d2c78a3          81 IKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP  156 (204)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999998643222 23333333322   455 7777899998653221   1223344444332  


Q ss_pred             ---CeEEEeecCC
Q 028466          146 ---VMFIETSAKA  155 (208)
Q Consensus       146 ---~~~~~~S~~~  155 (208)
                         +.+++.|+..
T Consensus       157 ~~~i~~i~~sa~~  169 (204)
T d2c78a3         157 GDEVPVIRGSALL  169 (204)
T ss_dssp             TTTSCEEECCHHH
T ss_pred             cccceeeeeechh
Confidence               5688888753

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.6e-19  Score=127.51  Aligned_cols=157  Identities=18%  Similarity=0.226  Sum_probs=101.5

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCCCCC-ccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc---------cchhhhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---------SLIPSYIR   80 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~   80 (208)
                      .|+|+|.+|||||||+|+|++.+.... ..++.+..........+.  ..+..+|++|.....         ........
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSSIG   84 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhccccchh
Confidence            589999999999999999998765422 222222222233333344  356678888854221         12222345


Q ss_pred             cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC-CeEEEeecCCCCCH
Q 028466           81 DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN-VMFIETSAKAGFNI  159 (208)
Q Consensus        81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v  159 (208)
                      .+++++++.|..+..  .....+...+.   ....|.++|+||.|..................++ .+++++||++|.|+
T Consensus        85 ~~~~~l~~~d~~~~~--~~~~~~~~~l~---~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi  159 (179)
T d1egaa1          85 DVELVIFVVEGTRWT--PDDEMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV  159 (179)
T ss_dssp             CEEEEEEEEETTCCC--HHHHHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred             hcceeEEEEecCccc--hhHHHHHHHhh---hccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCH
Confidence            678888899887432  22222223332   2357788889999987654433444455555555 58999999999999


Q ss_pred             HHHHHHHHHHcCCCc
Q 028466          160 KALFRKIAAALPGME  174 (208)
Q Consensus       160 ~~~~~~l~~~~~~~~  174 (208)
                      +++++.|.+.+++.+
T Consensus       160 ~~L~~~i~~~lpe~~  174 (179)
T d1egaa1         160 DTIAAIVRKHLPEAT  174 (179)
T ss_dssp             HHHHHHHHTTCCBCC
T ss_pred             HHHHHHHHHhCCCCC
Confidence            999999999986654

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.79  E-value=6.1e-19  Score=128.23  Aligned_cols=151  Identities=20%  Similarity=0.231  Sum_probs=98.3

Q ss_pred             CCCcceeEEEEcCCCCcHHHHHHHhhcC--CCC-------------------------------CCccceeeeeeeEEEE
Q 028466            5 SALAKYKLVFLGDQSVGKTSIITRFMYD--KFD-------------------------------NTYQATIGIDFLSKTM   51 (208)
Q Consensus         5 ~~~~~~~i~vvG~~~~GKStli~~l~~~--~~~-------------------------------~~~~~~~~~~~~~~~~   51 (208)
                      +....+||+++|+.++|||||+++|+..  ...                               .+.....+++.....+
T Consensus         5 ~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~   84 (222)
T d1zunb3           5 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   84 (222)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE
Confidence            3445789999999999999999999621  110                               0111222333333334


Q ss_pred             EECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-eEEEEEeCCCCcCcc
Q 028466           52 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDV-IIVLVGNKTDLVDKR  130 (208)
Q Consensus        52 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~iivv~nK~D~~~~~  130 (208)
                      ...+  ..+.++|+|||..|.....+.+..+|++|+|+|+...-.- +..+.+. +....  ++ .+|+++||+|+.+..
T Consensus        85 ~~~~--~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~-Qt~e~~~-~~~~~--gv~~iiv~vNK~D~~~~~  158 (222)
T d1zunb3          85 STAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSY-IASLL--GIKHIVVAINKMDLNGFD  158 (222)
T ss_dssp             ECSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHH-HHHHT--TCCEEEEEEECTTTTTSC
T ss_pred             eccc--eEEEEEeccchhhhhhhhccccccCceEEEEeccccCccc-chHHHHH-HHHHc--CCCEEEEEEEcccccccc
Confidence            3444  5799999999999999999999999999999999853211 2222222 22222  34 478888999997654


Q ss_pred             CcCHH----HHHHHHHHcC-----CeEEEeecCCCCCHHH
Q 028466          131 QVSIE----EGEAKARELN-----VMFIETSAKAGFNIKA  161 (208)
Q Consensus       131 ~~~~~----~~~~~~~~~~-----~~~~~~S~~~~~~v~~  161 (208)
                      +....    ++..++...+     ++++++||++|+|+.+
T Consensus       159 ~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         159 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             ceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            33232    3334444443     3689999999998843

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=9.4e-19  Score=128.61  Aligned_cols=147  Identities=18%  Similarity=0.228  Sum_probs=103.5

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhc--CC-----------------------------CCCCccceeeeeeeEEEEEECCeE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMY--DK-----------------------------FDNTYQATIGIDFLSKTMYLEDRT   57 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~   57 (208)
                      .++|+++|+.++|||||+.+|+.  +.                             ...+..+.++++.....+.+.+  
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--   83 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK--   83 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS--
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC--
Confidence            48999999999999999999862  11                             0113445666666667777766  


Q ss_pred             EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHH-------hHHHHHHHHHhhcCCCC-eEEEEEeCCCCcCc
Q 028466           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFL-------NTTKWVEEVRTERGSDV-IIVLVGNKTDLVDK  129 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~-~iivv~nK~D~~~~  129 (208)
                      ++++|+|||||..|...+.+.+..+|++|+|+|+... .++       +..+.+..+..   .++ ++||++||+|+.+.
T Consensus        84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G-~~e~g~~~~~QT~eh~~~~~~---~gv~~iiv~iNKmD~~~~  159 (239)
T d1f60a3          84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG-EFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVKW  159 (239)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH-HHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGTT
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCC-ccccccCchHhHHHHHHHHHH---cCCCeEEEEEECCCCCCC
Confidence            6799999999999999999999999999999999853 121       22332222222   235 47888999999765


Q ss_pred             cCcCHH----HHHHHHHHcC-----CeEEEeecCCCCCHHH
Q 028466          130 RQVSIE----EGEAKARELN-----VMFIETSAKAGFNIKA  161 (208)
Q Consensus       130 ~~~~~~----~~~~~~~~~~-----~~~~~~S~~~~~~v~~  161 (208)
                      .+....    ++..++...+     +.++++|+..|.|+-+
T Consensus       160 d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         160 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            433332    3344444333     5689999999988654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=2.4e-17  Score=122.75  Aligned_cols=114  Identities=20%  Similarity=0.320  Sum_probs=83.1

Q ss_pred             cce-eEEEEcCCCCcHHHHHHHhhcC--C----------------CCCCccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466            8 AKY-KLVFLGDQSVGKTSIITRFMYD--K----------------FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (208)
Q Consensus         8 ~~~-~i~vvG~~~~GKStli~~l~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (208)
                      ..+ +|+++|+.++|||||+++++..  .                .+.+..+..++......+.+++  .+++|+||||+
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~   81 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGH   81 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSS
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCch
Confidence            345 6999999999999999998621  1                0123334455566666677777  57999999999


Q ss_pred             hhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466           69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV  127 (208)
Q Consensus        69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~  127 (208)
                      .+|.......++.+|+.|+|+|+.+.=......-| ....   ..+.|.++++||+|..
T Consensus        82 ~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~---~~~lP~i~fINKmDr~  136 (276)
T d2bv3a2          82 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAE---KYKVPRIAFANKMDKT  136 (276)
T ss_dssp             SSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHH---TTTCCEEEEEECTTST
T ss_pred             hhhHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHH---HcCCCEEEEEeccccc
Confidence            99999999999999999999999864222222233 3333   3469999999999984

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=2.3e-18  Score=124.29  Aligned_cols=115  Identities=17%  Similarity=0.255  Sum_probs=81.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhh----hccCCE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY----IRDSSV   84 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~----~~~~d~   84 (208)
                      +.+|+|+|.+|||||||+|+|+++++.    ++.+.+.....+..++  ..+.+||+||++.+...+..+    ....+.
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~----~~tt~~~~~~~~~~~~--~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAADYDG--SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCC----CBCCCSSCEEETTGGG--SSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEecceEEEEEeCC--eEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            468999999999999999999988764    3333333333333333  468999999998776655444    445689


Q ss_pred             EEEEEeCCC-hhhHHhHHHHH----HHHHhhcCCCCeEEEEEeCCCCcCc
Q 028466           85 AVIVYDVAS-RQSFLNTTKWV----EEVRTERGSDVIIVLVGNKTDLVDK  129 (208)
Q Consensus        85 ~i~v~d~~~-~~s~~~~~~~~----~~~~~~~~~~~~iivv~nK~D~~~~  129 (208)
                      +++++|+.+ ..++.....|+    ..+......+.|+++|+||+|+...
T Consensus        77 ~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             cceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            999999774 44455544444    3334445578999999999998654

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.72  E-value=1.5e-16  Score=118.20  Aligned_cols=111  Identities=14%  Similarity=0.168  Sum_probs=81.2

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC--CC----------------CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK--FD----------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   72 (208)
                      +|+|+|+.++|||||+++|+...  ..                ++..+..++......+.+++  .+++++||||+.+|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhhh
Confidence            69999999999999999986221  10                01223345555566677777  569999999999999


Q ss_pred             cchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466           73 SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV  127 (208)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~  127 (208)
                      ......++.+|++|+|+|+.+.-....... +..+..   .++|.++++||+|..
T Consensus        82 ~e~~~al~~~D~avlvvda~~Gv~~~t~~~-~~~~~~---~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          82 GEIRGALEAADAALVAVSAEAGVQVGTERA-WTVAER---LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHHH---TTCCEEEEEECGGGC
T ss_pred             hhhhhhhcccCceEEEeeccCCccchhHHH-HHhhhh---ccccccccccccccc
Confidence            999999999999999999985422222222 333333   358999999999973

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.72  E-value=7e-18  Score=123.14  Aligned_cols=149  Identities=17%  Similarity=0.276  Sum_probs=93.4

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCC-------------------------------CCCCccceeeeeeeEEEEEECCeE
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDK-------------------------------FDNTYQATIGIDFLSKTMYLEDRT   57 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~   57 (208)
                      .++|+++|+-++|||||+.+|+...                               ...+..+..+++.....+.+++  
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~--   80 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK--   80 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS--
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC--
Confidence            5899999999999999999986310                               0112233344444444455554  


Q ss_pred             EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhh---H---HhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc--
Q 028466           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQS---F---LNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK--  129 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--  129 (208)
                      +.++++|||||..|...+.+.+..+|++|+|+|+.+.-.   +   .+..+.+..+... + -.++|+++||+|+...  
T Consensus        81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~-~-~~~iIv~iNK~D~~~~~~  158 (224)
T d1jnya3          81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM-G-LDQLIVAVNKMDLTEPPY  158 (224)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT-T-CTTCEEEEECGGGSSSTT
T ss_pred             ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh-C-CCceEEEEEcccCCCccc
Confidence            679999999999999999999999999999999986411   1   1222222222222 2 2457888899998642  


Q ss_pred             cCcCH----HHHHHHHHHc-----CCeEEEeecCCCCCHHH
Q 028466          130 RQVSI----EEGEAKAREL-----NVMFIETSAKAGFNIKA  161 (208)
Q Consensus       130 ~~~~~----~~~~~~~~~~-----~~~~~~~S~~~~~~v~~  161 (208)
                      .+...    ..+..+...+     .+.++++||..|.|+.+
T Consensus       159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             cHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            11112    2233333333     35789999999998853

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=3.1e-17  Score=116.05  Aligned_cols=163  Identities=13%  Similarity=0.085  Sum_probs=84.5

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh-------ccchh
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIP   76 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~   76 (208)
                      .++.+.++|+|+|.+|||||||+|+|++...........+................+..++.++....       .....
T Consensus        11 ~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (188)
T d1puia_          11 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG   90 (188)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhh
Confidence            45667899999999999999999999987654332222221112222222222222222222221111       11111


Q ss_pred             ---hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC--HHHHHHHHHHc--CCeEE
Q 028466           77 ---SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS--IEEGEAKAREL--NVMFI  149 (208)
Q Consensus        77 ---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--~~~~~~~~~~~--~~~~~  149 (208)
                         ......+.++.+.+..... ......++..+..   ...++++++||.|+.......  ....++.....  ..+++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i  166 (188)
T d1puia_          91 EYLEKRQSLQGLVVLMDIRHPL-KDLDQQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVE  166 (188)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCC-CHHHHHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEE
T ss_pred             hhhhhhhheeEEEEeecccccc-hhHHHHHHHHhhh---ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEE
Confidence               1122344555566665432 2222333333332   357888899999986532211  12223333333  34789


Q ss_pred             EeecCCCCCHHHHHHHHHHHc
Q 028466          150 ETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       150 ~~S~~~~~~v~~~~~~l~~~~  170 (208)
                      .+||++|.|++++++.|.+.+
T Consensus       167 ~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         167 TFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHh
Confidence            999999999999999998765

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.69  E-value=1e-16  Score=118.12  Aligned_cols=151  Identities=19%  Similarity=0.265  Sum_probs=83.4

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcC--CC-----------------------------CCCccceeeeeeeEEEEEECCe
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYD--KF-----------------------------DNTYQATIGIDFLSKTMYLEDR   56 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   56 (208)
                      ..++|+++|+.++|||||+.+|+..  ..                             ..+..+..+++.....+.+.+ 
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~-  101 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH-  101 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS-
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc-
Confidence            3578999999999999999999521  00                             111222333333333444444 


Q ss_pred             EEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHH-------hHHHHHHHHHhhcCCCC-eEEEEEeCCCCcC
Q 028466           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFL-------NTTKWVEEVRTERGSDV-IIVLVGNKTDLVD  128 (208)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~-~iivv~nK~D~~~  128 (208)
                       ..+.++|||||..|.....+....+|++++|+|+.+.. ++       +..+.+..+...   ++ .+++++||+|+..
T Consensus       102 -~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~-~~~~~~~~~QT~e~l~l~~~~---~i~~iiv~iNKmD~~~  176 (245)
T d1r5ba3         102 -RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGE-FEAGFERGGQTREHAVLARTQ---GINHLVVVINKMDEPS  176 (245)
T ss_dssp             -EEEEECCCCC-----------TTSCSEEEEEEECSTTH-HHHTTSTTCCHHHHHHHHHHT---TCSSEEEEEECTTSTT
T ss_pred             -ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCc-cCCccccccchHHHHHHHHHc---CCCeEEEEEEcCCCCc
Confidence             57999999999999999999999999999999998531 11       233333323222   34 4778889999864


Q ss_pred             cc--CcCHH----HHHHHHHHc-------CCeEEEeecCCCCCHHHHHH
Q 028466          129 KR--QVSIE----EGEAKAREL-------NVMFIETSAKAGFNIKALFR  164 (208)
Q Consensus       129 ~~--~~~~~----~~~~~~~~~-------~~~~~~~S~~~~~~v~~~~~  164 (208)
                      ..  +....    ++..+..+.       .++++++||++|+|+.++++
T Consensus       177 ~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         177 VQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            22  11122    222222222       24799999999999976544

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=8.1e-15  Score=115.23  Aligned_cols=159  Identities=14%  Similarity=0.143  Sum_probs=93.8

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccce---eeeeeeEEEEEECCeEEEEEEEecCCchhhccch-----hhhh
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQAT---IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI-----PSYI   79 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----~~~~   79 (208)
                      ..++|+|+|.+|+|||||+|+|++..........   .+.+......... ....+.+|||||........     ...+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~-~~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeecc-CCCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            3699999999999999999999986543222111   1111111122222 12258899999976433322     2235


Q ss_pred             ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc-------cCcCHH----HH----HHHHHHc
Q 028466           80 RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK-------RQVSIE----EG----EAKAREL  144 (208)
Q Consensus        80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~-------~~~~~~----~~----~~~~~~~  144 (208)
                      ..+|+++++.|..-.+   .-...+..+..   .++|+++|.||+|....       ......    ++    .......
T Consensus       134 ~~~d~~l~~~~~~~~~---~d~~l~~~l~~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~  207 (400)
T d1tq4a_         134 YEYDFFIIISATRFKK---NDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  207 (400)
T ss_dssp             GGCSEEEEEESSCCCH---HHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hcceEEEEecCCCCCH---HHHHHHHHHHH---cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc
Confidence            6789999988753211   11222333333   35899999999996311       111111    11    2222233


Q ss_pred             CC---eEEEeecCCC--CCHHHHHHHHHHHcCCC
Q 028466          145 NV---MFIETSAKAG--FNIKALFRKIAAALPGM  173 (208)
Q Consensus       145 ~~---~~~~~S~~~~--~~v~~~~~~l~~~~~~~  173 (208)
                      ++   +++.+|..+.  .++.++.+.+.+.+++.
T Consensus       208 ~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         208 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             CCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence            33   5788888764  48999999999998764

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=1.3e-15  Score=116.71  Aligned_cols=117  Identities=16%  Similarity=0.236  Sum_probs=80.1

Q ss_pred             Ccce-eEEEEcCCCCcHHHHHHHhhcC--C--------------CCCCccceeeeeeeEEEEEE--------------CC
Q 028466            7 LAKY-KLVFLGDQSVGKTSIITRFMYD--K--------------FDNTYQATIGIDFLSKTMYL--------------ED   55 (208)
Q Consensus         7 ~~~~-~i~vvG~~~~GKStli~~l~~~--~--------------~~~~~~~~~~~~~~~~~~~~--------------~~   55 (208)
                      ...+ +|+|+|+.++|||||+++|+..  .              ..++..+..++......+.+              ++
T Consensus        14 ~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~   93 (341)
T d1n0ua2          14 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   93 (341)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccc
Confidence            3456 4999999999999999999621  1              11222333444433333333              33


Q ss_pred             eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV  127 (208)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~  127 (208)
                      ..+.++++|||||.+|...+...++-+|++|+|+|+..+-.... +..+..+..   .+.|+++++||+|..
T Consensus        94 ~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT-~~~~~~a~~---~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          94 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQT-ETVLRQALG---ERIKPVVVINKVDRA  161 (341)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHH-HHHHHHHHH---TTCEEEEEEECHHHH
T ss_pred             cceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhH-HHHHHHHHH---cCCCeEEEEECcccc
Confidence            56789999999999999999999999999999999985422222 222333332   358999999999974

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.58  E-value=3.2e-14  Score=105.49  Aligned_cols=125  Identities=12%  Similarity=0.082  Sum_probs=78.4

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCCCC-ccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-------chhh-
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPS-   77 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~-   77 (208)
                      ...++|+|+|.+|+|||||+|.+++...... ..+..+.+........++  ..+.++||||......       .... 
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            4579999999999999999999998765432 233444445555556666  5699999999543211       1111 


Q ss_pred             -hhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCC--CCeEEEEEeCCCCcCccCcC
Q 028466           78 -YIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS--DVIIVLVGNKTDLVDKRQVS  133 (208)
Q Consensus        78 -~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~~~~~~  133 (208)
                       .....|++++|++++...--......+..+....+.  -.+++||.||.|..+.....
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~  166 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP  166 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCc
Confidence             123568999998886431111122333334333332  24689999999987644433

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.47  E-value=4.3e-14  Score=103.75  Aligned_cols=111  Identities=15%  Similarity=0.005  Sum_probs=67.3

Q ss_pred             EEEEEEecCCchhhccchhhh-----hccCCEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc
Q 028466           58 VRLQLWDTAGQERFRSLIPSY-----IRDSSVAVIVYDVAS---RQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK  129 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~-----~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~  129 (208)
                      ..+.+.|+||+..+.......     ....+.++++.|+..   +..+.............  ...|.++|+||+|+...
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~--~~~~~ivvinK~D~~~~  172 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSE  172 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH--hCCCceeeeeccccccH
Confidence            358899999998764433222     224568899999863   33332222111111111  25789999999998753


Q ss_pred             cCcCHH--------------------------HHHHHHHH--cCCeEEEeecCCCCCHHHHHHHHHHHc
Q 028466          130 RQVSIE--------------------------EGEAKARE--LNVMFIETSAKAGFNIKALFRKIAAAL  170 (208)
Q Consensus       130 ~~~~~~--------------------------~~~~~~~~--~~~~~~~~S~~~~~~v~~~~~~l~~~~  170 (208)
                      .+....                          .......+  ..++++++||++|+|+++++..|.+.+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         173 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            221100                          00001111  246899999999999999999998864

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.35  E-value=2e-12  Score=98.39  Aligned_cols=103  Identities=13%  Similarity=0.097  Sum_probs=63.1

Q ss_pred             EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHH
Q 028466           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEG  137 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~  137 (208)
                      +.+.|+.|.|...-...   ....+|.+++|......+..+.++.-+.++.        =++|+||.|+.+.........
T Consensus       144 ~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~gilE~a--------Di~vvNKaD~~~~~~~~~~~~  212 (323)
T d2qm8a1         144 FDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKKGIFELA--------DMIAVNKADDGDGERRASAAA  212 (323)
T ss_dssp             CCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCTTHHHHC--------SEEEEECCSTTCCHHHHHHHH
T ss_pred             CCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhhhHhhhh--------heeeEeccccccchHHHHHHH
Confidence            56788888886543322   3455999999999886655544333222221        277789999865433222221


Q ss_pred             HHHHHH----------cCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          138 EAKARE----------LNVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       138 ~~~~~~----------~~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      ..+...          ...+++.+|+.++.|+++++++|.+...
T Consensus       213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            112221          2357999999999999999999987753

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=2.3e-12  Score=98.10  Aligned_cols=102  Identities=17%  Similarity=0.097  Sum_probs=59.5

Q ss_pred             EEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC--HHH
Q 028466           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS--IEE  136 (208)
Q Consensus        59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--~~~  136 (208)
                      .+.+++|.|...-..   .+...+|.+++|.++...+....++..+..+   .     =++|+||.|........  ..+
T Consensus       148 d~iliEtvG~gq~e~---~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~---a-----Di~VvNKaD~~~~~~~~~~~~~  216 (327)
T d2p67a1         148 DVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKGLMEV---A-----DLIVINKDDGDNHTNVAIARHM  216 (327)
T ss_dssp             SEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHHHHHH---C-----SEEEECCCCTTCHHHHHHHHHH
T ss_pred             CeEEEeeccccccch---hhhhccceEEEEecCCCchhhhhhchhhhcc---c-----cEEEEEeecccchHHHHHHHHH
Confidence            456666666433221   2456789999999876555444443333333   2     16777999985432211  112


Q ss_pred             HHHHHHHc-------CCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466          137 GEAKAREL-------NVMFIETSAKAGFNIKALFRKIAAALP  171 (208)
Q Consensus       137 ~~~~~~~~-------~~~~~~~S~~~~~~v~~~~~~l~~~~~  171 (208)
                      .....+.+       ..+++.+||.+|+|++++++.|.+...
T Consensus       217 ~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         217 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence            22222221       357999999999999999999987653

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.26  E-value=3.4e-11  Score=89.92  Aligned_cols=84  Identities=15%  Similarity=0.181  Sum_probs=56.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCe------------E---EEEEEEecCCch----
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR------------T---VRLQLWDTAGQE----   69 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~i~D~~G~~----   69 (208)
                      .+||.|||.|+||||||+++++.........|..|++.....+.+...            +   ..+.++|.||.-    
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            379999999999999999999987765444555555544444433321            1   158899999942    


Q ss_pred             ---hhccchhhhhccCCEEEEEEeCC
Q 028466           70 ---RFRSLIPSYIRDSSVAVIVYDVA   92 (208)
Q Consensus        70 ---~~~~~~~~~~~~~d~~i~v~d~~   92 (208)
                         .......+.++.+|+++.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence               23334566789999999999874

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=2.9e-10  Score=85.64  Aligned_cols=122  Identities=19%  Similarity=0.266  Sum_probs=72.1

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceee----eeeeE---EEEEE---CC---------------------
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIG----IDFLS---KTMYL---ED---------------------   55 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~----~~~~~---~~~~~---~~---------------------   55 (208)
                      ...+|+|+|..++|||||+|.|++..+. ....++..    +.+..   .....   .+                     
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            3468999999999999999999988863 22222211    11100   00000   00                     


Q ss_pred             ------------------eEEEEEEEecCCchh-------------hccchhhhhccCC-EEEEEEeCCChhhHHhHHHH
Q 028466           56 ------------------RTVRLQLWDTAGQER-------------FRSLIPSYIRDSS-VAVIVYDVASRQSFLNTTKW  103 (208)
Q Consensus        56 ------------------~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~  103 (208)
                                        ....+.++|+||...             ...+...|+...+ ++++|.++.....-.....+
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~  184 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence                              001378999999542             1234555666666 56667777654444444444


Q ss_pred             HHHHHhhcCCCCeEEEEEeCCCCcCccCc
Q 028466          104 VEEVRTERGSDVIIVLVGNKTDLVDKRQV  132 (208)
Q Consensus       104 ~~~~~~~~~~~~~iivv~nK~D~~~~~~~  132 (208)
                      ...+.   ....++++|+||.|..+..+.
T Consensus       185 ~~~~~---~~~~r~i~Vltk~D~~~~~~~  210 (299)
T d2akab1         185 AKEVD---PQGQRTIGVITKLDLMDEGTD  210 (299)
T ss_dssp             HHHHC---TTCSSEEEEEECGGGSCTTCC
T ss_pred             HHHhC---cCCCceeeEEeccccccchhh
Confidence            44432   234678999999998765443

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.08  E-value=1.2e-10  Score=88.63  Aligned_cols=83  Identities=16%  Similarity=0.167  Sum_probs=45.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEE----------------------ECCeEEEEEEEecCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMY----------------------LEDRTVRLQLWDTAG   67 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~i~D~~G   67 (208)
                      ++|.++|.|+||||||+|+|++.+......|..|++.......                      ......++.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            5899999999999999999998766444445444432211110                      011235799999999


Q ss_pred             chh-------hccchhhhhccCCEEEEEEeCC
Q 028466           68 QER-------FRSLIPSYIRDSSVAVIVYDVA   92 (208)
Q Consensus        68 ~~~-------~~~~~~~~~~~~d~~i~v~d~~   92 (208)
                      .-.       ........++.+|++++|+|+.
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETT
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            432       2222334467899999999986

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.98  E-value=1.2e-09  Score=82.40  Aligned_cols=69  Identities=22%  Similarity=0.304  Sum_probs=42.3

Q ss_pred             EEEEEecCCchh-------------hccchhhhhccCCEEEEE-EeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCC
Q 028466           59 RLQLWDTAGQER-------------FRSLIPSYIRDSSVAVIV-YDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT  124 (208)
Q Consensus        59 ~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~  124 (208)
                      .+.++|+||...             ...++..|+.+++.+|++ .++.....-.....+...+.   .....+++|+||+
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~---~~~~r~i~Vitk~  208 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD---PEGKRTIGVITKL  208 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC---SSCSSEEEEEECT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhC---cCCCeEEEEEecc
Confidence            478999999542             234566788889876665 45443322223344433332   2346789999999


Q ss_pred             CCcCcc
Q 028466          125 DLVDKR  130 (208)
Q Consensus       125 D~~~~~  130 (208)
                      |.....
T Consensus       209 D~~~~~  214 (306)
T d1jwyb_         209 DLMDKG  214 (306)
T ss_dssp             TSSCSS
T ss_pred             ccccch
Confidence            986543

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.97  E-value=7.4e-10  Score=83.27  Aligned_cols=86  Identities=17%  Similarity=0.193  Sum_probs=60.7

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCC-CCCccceeeeeeeEEEEEECCe---------------EEEEEEEecCCchh-
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQER-   70 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~-   70 (208)
                      ..++|.|||.|+||||||+|++++... .....|..|++.....+.+...               ...+.+.|.||.-. 
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            348999999999999999999997654 2334465555554444444321               13688999999432 


Q ss_pred             ------hccchhhhhccCCEEEEEEeCCC
Q 028466           71 ------FRSLIPSYIRDSSVAVIVYDVAS   93 (208)
Q Consensus        71 ------~~~~~~~~~~~~d~~i~v~d~~~   93 (208)
                            ........++.+|++|+|+|+.+
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence                  23345566899999999999864

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.61  E-value=2e-08  Score=74.39  Aligned_cols=57  Identities=21%  Similarity=0.300  Sum_probs=36.7

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (208)
                      ...++|+|+|.||||||||+|+|.+.+.. ....|+.|.+..  .+..+.   .+.++||||.
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~--~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEECCcccccccce--EEECCC---CeEEecCCCc
Confidence            46799999999999999999999987663 334455554433  233333   4889999995

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.49  E-value=9.2e-07  Score=60.58  Aligned_cols=23  Identities=26%  Similarity=0.632  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      +||+|+|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999998753

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.43  E-value=6.5e-08  Score=68.95  Aligned_cols=61  Identities=15%  Similarity=0.041  Sum_probs=35.9

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCC------CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDN------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   72 (208)
                      .-..+++|++|||||||+|+|.......      ....+.-++.....+.+.++   -.++||||...+.
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~  161 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLE  161 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCC
T ss_pred             CCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccccc
Confidence            3467899999999999999998653321      11111112223333445432   3588999976543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=9.9e-07  Score=63.02  Aligned_cols=93  Identities=15%  Similarity=0.166  Sum_probs=48.5

Q ss_pred             EEEEecCCchhhccchhhh--------hccCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466           60 LQLWDTAGQERFRSLIPSY--------IRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVDKR  130 (208)
Q Consensus        60 ~~i~D~~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~  130 (208)
                      ..++.+.|..........+        .-..+.+|.|+|+........ ...+..++. ..  +   ++|+||+|+.++ 
T Consensus        92 ~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~-~A--D---~ivlNK~Dl~~~-  164 (222)
T d1nija1          92 RLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG-YA--D---RILLTKTDVAGE-  164 (222)
T ss_dssp             EEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHH-TC--S---EEEEECTTTCSC-
T ss_pred             eeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHH-hC--C---cccccccccccH-
Confidence            4666777754333322111        123588999999986432221 111222332 11  1   566799999753 


Q ss_pred             CcCHHHHHHHHHHcC--CeEEEeecCCCCCHHHHH
Q 028466          131 QVSIEEGEAKARELN--VMFIETSAKAGFNIKALF  163 (208)
Q Consensus       131 ~~~~~~~~~~~~~~~--~~~~~~S~~~~~~v~~~~  163 (208)
                         .+++++..+.++  +++++++ .-...+..+|
T Consensus       165 ---~~~~~~~l~~lNP~a~Ii~~~-~g~v~~~~ll  195 (222)
T d1nija1         165 ---AEKLHERLARINARAPVYTVT-HGDIDLGLLF  195 (222)
T ss_dssp             ---THHHHHHHHHHCSSSCEEECC-SSCCCGGGGS
T ss_pred             ---HHHHHHHHHHHhCCCeEEEee-CCccCHHHhh
Confidence               235666666665  5677554 2233444443

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.32  E-value=8.1e-08  Score=68.65  Aligned_cols=61  Identities=16%  Similarity=0.114  Sum_probs=33.2

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCCCC------CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   72 (208)
                      +.-..+++|++|||||||+|+|.......      ....+.-++.....+..+++    .++||||...+.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~gg----~iiDTPG~r~~~  162 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGG----LVADTPGFSSLE  162 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTE----EEESSCSCSSCC
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCCC----EEEECCcccccc
Confidence            33467899999999999999998653211      11111111111222334542    377999986653

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.29  E-value=1e-06  Score=62.65  Aligned_cols=88  Identities=20%  Similarity=0.222  Sum_probs=61.2

Q ss_pred             hhhccCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH--cCCeEEEeec
Q 028466           77 SYIRDSSVAVIVYDVASRQ-SFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE--LNVMFIETSA  153 (208)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~S~  153 (208)
                      ....+.|.+++|+.+.+|+ +...+..++.....   .+.+.+||+||+|+.+..+  ......+...  .+.+++.+|+
T Consensus         6 P~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~---~~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~vSa   80 (225)
T d1u0la2           6 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSA   80 (225)
T ss_dssp             TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCT
T ss_pred             CCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---cCCCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEEecc
Confidence            3467899999999988764 33445665554443   3588888999999965332  2233333333  2468999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 028466          154 KAGFNIKALFRKIAAA  169 (208)
Q Consensus       154 ~~~~~v~~~~~~l~~~  169 (208)
                      +++.|++++.+.|...
T Consensus        81 ~~~~g~~~L~~~l~~k   96 (225)
T d1u0la2          81 KTGMGIEELKEYLKGK   96 (225)
T ss_dssp             TTCTTHHHHHHHHSSS
T ss_pred             ccchhHhhHHHHhcCC
Confidence            9999999999887543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.29  E-value=1.4e-06  Score=61.63  Aligned_cols=91  Identities=15%  Similarity=0.059  Sum_probs=50.1

Q ss_pred             EEEEEEecCCchhhccch----hhh---hc-----cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 028466           58 VRLQLWDTAGQERFRSLI----PSY---IR-----DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTD  125 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~----~~~---~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D  125 (208)
                      +.+.++||+|...+....    ..+   ..     ..+-.++|.|++..  .+.+.+........    .+--++.+|.|
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~----~~~~lI~TKlD  167 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV----NVTGIILTKLD  167 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS----CCCEEEEECGG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhcccc----CCceEEEeccc
Confidence            458999999944322211    111   11     14678999998732  33333322222221    12245559999


Q ss_pred             CcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466          126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK  160 (208)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (208)
                      ...    ..-.+...+...++++..++  +|+.++
T Consensus       168 e~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~  196 (213)
T d1vmaa2         168 GTA----KGGITLAIARELGIPIKFIG--VGEKAE  196 (213)
T ss_dssp             GCS----CTTHHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred             CCC----cccHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            632    23456677777888877776  455553

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.25  E-value=3.7e-07  Score=67.38  Aligned_cols=115  Identities=9%  Similarity=0.035  Sum_probs=72.8

Q ss_pred             chhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeec
Q 028466           74 LIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSA  153 (208)
Q Consensus        74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~  153 (208)
                      .....++.+|++|+|.|+.+|-+...  ..+..+.    .++|.|+|+||+|+.+...  .....+.....+...+.+|+
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~----~~Kp~IlVlNK~DLv~~~~--~~~w~~~f~~~~~~~i~isa   79 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL----KNKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSINS   79 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC----SSSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECCT
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH----cCCCeEEEEECccCCchHH--HHHHHHHHHhcCCccceeec
Confidence            34557899999999999988754432  1222222    2589999999999975421  22233334455678999999


Q ss_pred             CCCCCHHHHHHHHHHHcCCC----ccCCcccccccccccccCCCCCC
Q 028466          154 KAGFNIKALFRKIAAALPGM----ETLSSTKQEDLVDVNLKSSNTNT  196 (208)
Q Consensus       154 ~~~~~v~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  196 (208)
                      .++.+...+...+.+.+.+.    .........-.+.+-+.++++++
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~PNvGKS  126 (273)
T d1puja_          80 VNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKS  126 (273)
T ss_dssp             TTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHH
T ss_pred             ccCCCccccchhhhhhhhhhhhhhhhccCCCCceEEEEEecCccchh
Confidence            99999888777776655432    12222223334566666666553

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.14  E-value=5.1e-06  Score=58.38  Aligned_cols=85  Identities=20%  Similarity=0.156  Sum_probs=49.3

Q ss_pred             EEEEEEecCCchhhccch----hhh---h-----ccCCEEEEEEeCCC-hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCC
Q 028466           58 VRLQLWDTAGQERFRSLI----PSY---I-----RDSSVAVIVYDVAS-RQSFLNTTKWVEEVRTERGSDVIIVLVGNKT  124 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~----~~~---~-----~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~  124 (208)
                      +.+.++||+|...+....    ..+   .     ...+-.++|.|++. .+....+..++..+.      .. -++.||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~------~~-~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG------LT-GVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC------CS-EEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccC------Cc-eEEEecc
Confidence            468999999954433221    111   1     13477889999974 344555555444442      11 3455999


Q ss_pred             CCcCccCcCHHHHHHHHHHcCCeEEEeec
Q 028466          125 DLVDKRQVSIEEGEAKARELNVMFIETSA  153 (208)
Q Consensus       125 D~~~~~~~~~~~~~~~~~~~~~~~~~~S~  153 (208)
                      |....    .-.+...+...++++..++.
T Consensus       162 Det~~----~G~~l~~~~~~~~Pi~~i~~  186 (207)
T d1okkd2         162 DGTAK----GGVLIPIVRTLKVPIKFVGV  186 (207)
T ss_dssp             TSSCC----CTTHHHHHHHHCCCEEEEEC
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEeC
Confidence            96322    33455666777888766663

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.09  E-value=2e-05  Score=55.29  Aligned_cols=84  Identities=20%  Similarity=0.138  Sum_probs=48.5

Q ss_pred             EEEEEEecCCchhhccch----hhh--hccCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466           58 VRLQLWDTAGQERFRSLI----PSY--IRDSSVAVIVYDVASRQ-SFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR  130 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~  130 (208)
                      +.+.++||+|........    ..+  ..+.+-+++|.|++... ....+..++..+    +  . --++++|.|...  
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~----~--~-~~~I~TKlDe~~--  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV----G--V-TGLVLTKLDGDA--  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT----C--C-CEEEEECGGGCS--
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC----C--C-CeeEEeecCccc--
Confidence            468999999954333221    111  33568899999987542 233233322222    1  1 135569999632  


Q ss_pred             CcCHHHHHHHHHHcCCeEEEee
Q 028466          131 QVSIEEGEAKARELNVMFIETS  152 (208)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~S  152 (208)
                        ..-.+.......++++..++
T Consensus       164 --~~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         164 --RGGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             --SCHHHHHHHHHHCCCEEEEC
T ss_pred             --cchHHHHHHHHHCCCEEEEe
Confidence              24566677777888876665

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=1.1e-05  Score=56.68  Aligned_cols=90  Identities=16%  Similarity=0.140  Sum_probs=50.4

Q ss_pred             EEEEEEecCCchhhccc----hh---hhhc-----cCCEEEEEEeCCC-hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCC
Q 028466           58 VRLQLWDTAGQERFRSL----IP---SYIR-----DSSVAVIVYDVAS-RQSFLNTTKWVEEVRTERGSDVIIVLVGNKT  124 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~----~~---~~~~-----~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~  124 (208)
                      +.+.++||+|.......    ..   ...+     ..+-.++|.|++. .+....+..++..+       .+--++.||.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV-------GLTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS-------CCCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc-------CCceEEEeec
Confidence            45899999994322221    11   1122     2468889999873 33333333333322       1223455999


Q ss_pred             CCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466          125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK  160 (208)
Q Consensus       125 D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (208)
                      |....    .-.+...+...++++..++  +|+.++
T Consensus       165 De~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~  194 (211)
T d2qy9a2         165 DGTAK----GGVIFSVADQFGIPIRYIG--VGERIE  194 (211)
T ss_dssp             TTCTT----TTHHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            96322    3455666777888877776  555553

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.06  E-value=1.9e-05  Score=55.47  Aligned_cols=90  Identities=12%  Similarity=0.132  Sum_probs=52.2

Q ss_pred             EEEEEEecCCchhhcc------chhhh--hccCCEEEEEEeCCCh-hhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466           58 VRLQLWDTAGQERFRS------LIPSY--IRDSSVAVIVYDVASR-QSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD  128 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~------~~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~  128 (208)
                      +.+.++||+|...+..      ....+  .-..+-+++|.+++.. +....+..++..    .  +.. -++.||.|...
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~----~--~~~-~lI~TKlDet~  167 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQA----S--KIG-TIIITKMDGTA  167 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHH----C--TTE-EEEEECTTSCS
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhcc----c--Ccc-eEEEecccCCC
Confidence            4689999999543321      11111  2245788899998743 233323222221    1  122 34569999632


Q ss_pred             ccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466          129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIK  160 (208)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (208)
                          ..-.+...+...++++..++  +|++++
T Consensus       168 ----~~G~~l~~~~~~~lPi~~it--~Gq~v~  193 (211)
T d1j8yf2         168 ----KGGGALSAVAATGATIKFIG--TGEKID  193 (211)
T ss_dssp             ----CHHHHHHHHHTTTCCEEEEE--CSSSTT
T ss_pred             ----cccHHHHHHHHHCcCEEEEe--CCCCcc
Confidence                35677777888898887777  466554

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.99  E-value=1.4e-06  Score=62.16  Aligned_cols=88  Identities=17%  Similarity=0.218  Sum_probs=60.4

Q ss_pred             hhhccCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC--HHHHHHHHHHcCCeEEEeec
Q 028466           77 SYIRDSSVAVIVYDVASRQ-SFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS--IEEGEAKARELNVMFIETSA  153 (208)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~S~  153 (208)
                      ....+.|.+++|+++.+|+ ....+..++.....   .+++.+||+||.|+.++.+..  ...........+++++.+|+
T Consensus         6 P~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~---~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa   82 (231)
T d1t9ha2           6 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSS   82 (231)
T ss_dssp             TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCH
T ss_pred             CCccccCEEEEEEECCCCCCCHHHHHHHHHHHHH---cCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeec
Confidence            3467899999999988764 34445665554433   357888899999997543211  12223334556899999999


Q ss_pred             CCCCCHHHHHHHHH
Q 028466          154 KAGFNIKALFRKIA  167 (208)
Q Consensus       154 ~~~~~v~~~~~~l~  167 (208)
                      .+++|++++...|.
T Consensus        83 ~~~~gl~~L~~~l~   96 (231)
T d1t9ha2          83 KDQDSLADIIPHFQ   96 (231)
T ss_dssp             HHHTTCTTTGGGGT
T ss_pred             CChhHHHHHHHhhc
Confidence            99999988776553

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.78  E-value=7.3e-06  Score=55.56  Aligned_cols=26  Identities=19%  Similarity=0.254  Sum_probs=23.3

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhhc
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .++.++|+|.|++||||||+.+.|..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            46789999999999999999998864

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.69  E-value=1.2e-05  Score=53.38  Aligned_cols=25  Identities=20%  Similarity=0.413  Sum_probs=20.4

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      |+++ |+|.|++|||||||.++|...
T Consensus         1 Mkkl-Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           1 MKKI-ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             CCEE-EEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEE-EEEECCCCCCHHHHHHHHHHh
Confidence            4445 778999999999999998643

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.00011  Score=53.69  Aligned_cols=95  Identities=17%  Similarity=0.089  Sum_probs=53.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCCCCCc-----cceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc--------ch
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTY-----QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LI   75 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~   75 (208)
                      -.-|.|+|+.++|||+|+|.|.+....-..     .-|.++-.....+ .++....+.++||.|......        +.
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~~~~~~~~~~~~~i~  110 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLGDVEKGDNQNDSWIF  110 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBCCGGGCCCTTHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEecccccccccccchhHHHHH
Confidence            456788999999999999999976642211     1233333222222 233345789999999654221        11


Q ss_pred             hhhhccCCEEEE-EEeCCChhhHHhHHHHH
Q 028466           76 PSYIRDSSVAVI-VYDVASRQSFLNTTKWV  104 (208)
Q Consensus        76 ~~~~~~~d~~i~-v~d~~~~~s~~~~~~~~  104 (208)
                      ...+--++++|+ ++...+...++.+....
T Consensus       111 ~l~~llSs~~i~N~~~~~~~~~l~~L~~~~  140 (277)
T d1f5na2         111 ALAVLLSSTFVYNSIGTINQQAMDQLYYVT  140 (277)
T ss_dssp             HHHHHHCSEEEEEEESCSSHHHHHTTHHHH
T ss_pred             HHHHHHhCEEEEeccccCcHHHHHHHHHHH
Confidence            111223666666 55555555555444433

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.57  E-value=1.5e-05  Score=54.34  Aligned_cols=23  Identities=22%  Similarity=0.473  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .-+|+|.|++|+|||||+++|..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999864

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.57  E-value=2e-05  Score=54.36  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=21.8

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      ++.++|+|+|++||||||+...|.
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La   24 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLA   24 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHH
Confidence            467899999999999999999876

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=2.2e-05  Score=52.77  Aligned_cols=21  Identities=24%  Similarity=0.434  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      -|+|+|.+|||||||+++|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999974

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.52  E-value=3.1e-05  Score=53.54  Aligned_cols=28  Identities=14%  Similarity=0.192  Sum_probs=23.0

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhc
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      |+..+...|+|+|++||||||+.++|..
T Consensus         1 ~~~~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           1 MEKSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3445667889999999999999998863

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.50  E-value=2.6e-05  Score=52.54  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=20.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~   30 (208)
                      -.+|+|+|++||||||+.+.|.
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La   25 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELA   25 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999885

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=2.3e-05  Score=53.69  Aligned_cols=21  Identities=33%  Similarity=0.618  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q 028466           12 LVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~   32 (208)
                      |+|+||+|+||+||+++|+..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            888999999999999999854

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.44  E-value=3.6e-05  Score=51.76  Aligned_cols=20  Identities=25%  Similarity=0.456  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q 028466           12 LVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~   31 (208)
                      |+|.|++||||||+.++|..
T Consensus         5 I~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88899999999999998864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.33  E-value=5.7e-05  Score=51.48  Aligned_cols=21  Identities=24%  Similarity=0.452  Sum_probs=19.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~   30 (208)
                      +||+|+|+|||||||+.+.|.
T Consensus         1 m~I~i~G~pGSGKsT~a~~La   21 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIV   21 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999998775

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.29  E-value=5.9e-05  Score=51.90  Aligned_cols=22  Identities=18%  Similarity=0.238  Sum_probs=19.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~   30 (208)
                      +++|+|.|++||||||+...|.
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La   24 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIK   24 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999875

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.26  E-value=7.4e-05  Score=51.05  Aligned_cols=22  Identities=23%  Similarity=0.404  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998763

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.25  E-value=0.0001  Score=50.81  Aligned_cols=25  Identities=16%  Similarity=0.308  Sum_probs=22.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      -+-++|+|+|+|||||||+...|..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHH
Confidence            4568999999999999999998874

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.24  E-value=8.3e-05  Score=50.73  Aligned_cols=21  Identities=19%  Similarity=0.474  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~   30 (208)
                      ++|+|+|++||||||+.+.|.
T Consensus         1 m~I~i~G~pGsGKsT~a~~La   21 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLA   21 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999999876

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.24  E-value=7.9e-05  Score=50.08  Aligned_cols=20  Identities=20%  Similarity=0.476  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q 028466           12 LVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~   31 (208)
                      +.|+|.+|||||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            35999999999999998863

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.00013  Score=49.43  Aligned_cols=25  Identities=20%  Similarity=0.259  Sum_probs=21.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .+..-|+++|.+||||||+..++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4556788899999999999998864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=8.7e-05  Score=50.54  Aligned_cols=21  Identities=24%  Similarity=0.464  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~   30 (208)
                      +||+|+|++||||||..+.|.
T Consensus         1 m~I~i~G~pGSGKsT~~~~La   21 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIM   21 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999998875

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.18  E-value=0.00011  Score=50.22  Aligned_cols=22  Identities=18%  Similarity=0.386  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      ++|+|+|++||||||+.+.|..
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999998863

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00015  Score=48.08  Aligned_cols=21  Identities=19%  Similarity=0.415  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      .|+|+|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00015  Score=49.05  Aligned_cols=20  Identities=30%  Similarity=0.534  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCcHHHHHHHhh
Q 028466           11 KLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~   30 (208)
                      .|+|.|++|+|||||+..+.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~   22 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKAS   22 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            48899999999999999876

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00016  Score=51.74  Aligned_cols=24  Identities=13%  Similarity=0.131  Sum_probs=20.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .=+++|+|++|+|||||++.+.+-
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhc
Confidence            346899999999999999988764

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.04  E-value=0.00016  Score=50.30  Aligned_cols=21  Identities=29%  Similarity=0.381  Sum_probs=19.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~   30 (208)
                      .-|+++|.|||||||+.++|.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~   23 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLT   23 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            458899999999999999986

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.03  E-value=0.00022  Score=48.01  Aligned_cols=24  Identities=17%  Similarity=0.324  Sum_probs=20.9

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      .+.+-|.|+|.+||||||+.+.|.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            456889999999999999998775

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.02  E-value=0.00039  Score=51.96  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=21.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .+|+|.|+.|+|||||++.|+.--
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            469999999999999999998543

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.01  E-value=0.00018  Score=49.37  Aligned_cols=21  Identities=19%  Similarity=0.586  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q 028466           12 LVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~   32 (208)
                      |+|+|++||||+||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998754

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.00  E-value=0.00021  Score=50.17  Aligned_cols=24  Identities=17%  Similarity=0.324  Sum_probs=21.4

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      |+.+.|+|-|++||||||....|.
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La   24 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIA   24 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHH
Confidence            456899999999999999999875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00022  Score=49.00  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~   30 (208)
                      +.|+|+|++||||||....|.
T Consensus         2 ~iI~i~GppGSGKsT~a~~La   22 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIV   22 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            789999999999999999875

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.97  E-value=0.00018  Score=48.21  Aligned_cols=21  Identities=33%  Similarity=0.414  Sum_probs=18.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~   30 (208)
                      .+|+++|.+||||||+.+.|.
T Consensus         2 p~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            379999999999999998774

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.96  E-value=0.00021  Score=51.58  Aligned_cols=23  Identities=17%  Similarity=0.277  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      =.++|+|++|+|||||++.+.+-
T Consensus        42 e~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCChHHHHHHHHhcc
Confidence            47999999999999999988754

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.95  E-value=0.00023  Score=51.00  Aligned_cols=24  Identities=21%  Similarity=0.272  Sum_probs=20.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .=.++|+|++|+|||||++.+.+-
T Consensus        28 Ge~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          28 NSIIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            347899999999999999988754

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.95  E-value=0.00022  Score=48.68  Aligned_cols=21  Identities=24%  Similarity=0.471  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q 028466           12 LVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~   32 (208)
                      |+|+|++|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678899999999999998754

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.94  E-value=0.00027  Score=49.12  Aligned_cols=23  Identities=22%  Similarity=0.367  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            47899999999999999987654

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.94  E-value=0.00022  Score=48.36  Aligned_cols=19  Identities=32%  Similarity=0.321  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHhh
Q 028466           12 LVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~   30 (208)
                      |+|.|++||||||+++.|.
T Consensus         4 I~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6778999999999999874

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.92  E-value=0.00034  Score=47.83  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=21.0

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      ..++-|+|.|++|||||||.+.|.
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~   43 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLS   43 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            356778999999999999999886

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.0003  Score=49.93  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      -++++|++|+|||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5789999999999999988754

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.91  E-value=0.00029  Score=49.96  Aligned_cols=23  Identities=13%  Similarity=0.241  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      -++|+|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            47899999999999999776643

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00026  Score=50.96  Aligned_cols=23  Identities=13%  Similarity=0.195  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      =.++|+|++|+|||||++.+.+-
T Consensus        41 e~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcc
Confidence            46899999999999999988754

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.00028  Score=49.20  Aligned_cols=22  Identities=18%  Similarity=0.333  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      =|+|+||+||||+||+++|+..
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4788899999999999999754

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.00028  Score=47.24  Aligned_cols=21  Identities=19%  Similarity=0.369  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      -++|+|++||||||+.+.|..
T Consensus         8 iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            356689999999999999864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00018  Score=49.31  Aligned_cols=25  Identities=16%  Similarity=0.235  Sum_probs=21.5

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhh
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      ..+...|.++|.+||||||+.+.|.
T Consensus        16 ~~~g~vI~L~G~pGSGKTTiAk~La   40 (195)
T d1x6va3          16 GFRGCTVWLTGLSGAGKTTVSMALE   40 (195)
T ss_dssp             SCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHH
Confidence            3456788999999999999999885

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=0.00045  Score=47.52  Aligned_cols=25  Identities=16%  Similarity=0.213  Sum_probs=20.5

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .+.-.|+|+|++||||||+...|..
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3445688889999999999998863

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.84  E-value=0.0003  Score=48.40  Aligned_cols=20  Identities=20%  Similarity=0.580  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q 028466           12 LVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~   31 (208)
                      |+|+|++||||+||.++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999864

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.83  E-value=0.00031  Score=46.95  Aligned_cols=20  Identities=25%  Similarity=0.544  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCcHHHHHHHhh
Q 028466           11 KLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~   30 (208)
                      +|+++|++|+||||+.+.|.
T Consensus         2 ~I~liG~~GsGKsTi~k~La   21 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALA   21 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            58999999999999998874

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.82  E-value=0.00031  Score=51.45  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      =.++|+|+.|+|||||++.+.+--
T Consensus        63 e~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhCCC
Confidence            368999999999999999887643

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.81  E-value=0.00033  Score=49.87  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      -++++|++|+|||||++.+.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            35689999999999999888654

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.80  E-value=0.00047  Score=47.40  Aligned_cols=28  Identities=18%  Similarity=0.381  Sum_probs=23.6

Q ss_pred             CCCCcceeEEEEcCCCCcHHHHHHHhhc
Q 028466            4 VSALAKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         4 ~~~~~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      +...+.+-|+|-|..||||||+++.|..
T Consensus         4 ~~~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           4 AEGTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            4455678899999999999999998864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.78  E-value=0.00027  Score=50.92  Aligned_cols=24  Identities=21%  Similarity=0.253  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .=+++|+|++|+|||||++.+.+-
T Consensus        44 Ge~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          44 GETVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhc
Confidence            347899999999999999977653

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.77  E-value=0.00045  Score=49.18  Aligned_cols=23  Identities=30%  Similarity=0.352  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      -+.++|++|+|||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999999887654

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.73  E-value=0.00033  Score=49.56  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      -++++|++|+|||||++.+.+-..
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Confidence            478999999999999999887643

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00039  Score=49.56  Aligned_cols=23  Identities=17%  Similarity=0.245  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      -+.|+|++|+|||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            47899999999999999887653

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.66  E-value=0.00058  Score=48.64  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .+.++|++|+|||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            57899999999999999887654

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.64  E-value=0.00072  Score=45.22  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      --|+|.|++||||||+.+.|...
T Consensus         5 ~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            34788899999999999988643

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.64  E-value=0.00062  Score=45.53  Aligned_cols=21  Identities=24%  Similarity=0.448  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      =|+|.|++||||||+.+.|..
T Consensus         5 iI~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            356669999999999998864

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.63  E-value=0.00043  Score=49.91  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=19.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      --|++.|+||+|||||...+..
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3488999999999999998864

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.61  E-value=0.00055  Score=45.99  Aligned_cols=20  Identities=15%  Similarity=0.388  Sum_probs=17.6

Q ss_pred             eEEEEcCCCCcHHHHHHHhh
Q 028466           11 KLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~   30 (208)
                      .|+++|++||||||+.+.|.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            37889999999999999874

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.61  E-value=0.00052  Score=47.16  Aligned_cols=21  Identities=14%  Similarity=0.308  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      -|+|+|+|||||||+..+|..
T Consensus        10 iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            377899999999999998864

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.60  E-value=0.00068  Score=48.29  Aligned_cols=24  Identities=17%  Similarity=0.144  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      -+.|+|+.|+|||||++.+.+-..
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            468999999999999998886643

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.00039  Score=49.38  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      -+.|+|+.|+|||||++.+.+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999998864

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.55  E-value=0.00074  Score=48.18  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      -+.++|+.|+|||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999988654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.00073  Score=46.47  Aligned_cols=24  Identities=33%  Similarity=0.570  Sum_probs=20.5

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .+=++++||++|||||+++..|..
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHH
Confidence            345899999999999999997764

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.51  E-value=0.00068  Score=48.88  Aligned_cols=23  Identities=13%  Similarity=0.377  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      .+.|+|++|+|||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            57899999999999999887653

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.49  E-value=0.00067  Score=46.00  Aligned_cols=20  Identities=25%  Similarity=0.478  Sum_probs=16.9

Q ss_pred             eEE-EEcCCCCcHHHHHHHhh
Q 028466           11 KLV-FLGDQSVGKTSIITRFM   30 (208)
Q Consensus        11 ~i~-vvG~~~~GKStli~~l~   30 (208)
                      ||+ |.|.+||||||+++.|.
T Consensus         2 kiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            565 56999999999999875

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.00094  Score=46.48  Aligned_cols=22  Identities=18%  Similarity=0.427  Sum_probs=19.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~   30 (208)
                      ++-|+|.|++|||||||.+.|.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIV   23 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3789999999999999999874

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.45  E-value=0.00074  Score=47.89  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      -.+++.|+||+||||+++.+..
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.45  E-value=0.0021  Score=42.57  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      ..-|++-|+-|+|||||++.+...
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEecCCCccHHHHHHHHHhh
Confidence            456888999999999999988743

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.45  E-value=0.00047  Score=49.16  Aligned_cols=24  Identities=21%  Similarity=0.288  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      .++|+|++|+|||||++.+.+-..
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~~   56 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLDV   56 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHcCcC
Confidence            578999999999999998887543

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.43  E-value=0.00081  Score=47.63  Aligned_cols=22  Identities=18%  Similarity=0.329  Sum_probs=19.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      ..+++.|+||+|||++.+.+..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHh
Confidence            3589999999999999998764

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.41  E-value=0.001  Score=47.90  Aligned_cols=23  Identities=17%  Similarity=0.241  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      -+.|+|+.|+|||||++.+.+-.
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Confidence            36899999999999999988664

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.0009  Score=48.46  Aligned_cols=24  Identities=29%  Similarity=0.549  Sum_probs=20.3

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhc
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .+=++++||++|||||++++.|..
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHH
Confidence            345799999999999999998763

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.23  E-value=0.0017  Score=44.23  Aligned_cols=25  Identities=12%  Similarity=0.105  Sum_probs=21.3

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      ++-|.|.|.+||||||+.+.|....
T Consensus         3 p~IIgitG~~gSGKstva~~l~~~g   27 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRSWG   27 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHCC
Confidence            4789999999999999999886543

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.12  E-value=0.0015  Score=45.95  Aligned_cols=21  Identities=33%  Similarity=0.501  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      .+++.|++|+||||+++.+..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998764

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.10  E-value=0.0015  Score=46.71  Aligned_cols=22  Identities=18%  Similarity=0.344  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      ..|++.|++|+|||+|.+.+..
T Consensus        41 ~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhh
Confidence            4699999999999999998864

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.09  E-value=0.0015  Score=48.37  Aligned_cols=22  Identities=32%  Similarity=0.558  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      -.++++||+|||||.|.+.+..
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhh
Confidence            4689999999999999998864

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.06  E-value=0.0015  Score=46.87  Aligned_cols=21  Identities=33%  Similarity=0.343  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      -++|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            577889999999999998863

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.04  E-value=0.0017  Score=46.24  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      -.+++.|++|+||||++..+...
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999988743

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.03  E-value=0.0019  Score=46.21  Aligned_cols=23  Identities=22%  Similarity=0.309  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      -.++|.|++|+|||++++.+...
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999987643

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.96  E-value=0.0025  Score=44.32  Aligned_cols=25  Identities=12%  Similarity=0.183  Sum_probs=21.5

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .+..-|.+.|.+|+|||||.+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999998863

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.82  E-value=0.0024  Score=45.64  Aligned_cols=21  Identities=24%  Similarity=0.390  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      .|++.|++|+|||+|++.+..
T Consensus        44 giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHH
Confidence            489999999999999999874

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.79  E-value=0.0025  Score=44.77  Aligned_cols=21  Identities=33%  Similarity=0.534  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      .+++.|++|+||||+++.+..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHH
Confidence            489999999999999998864

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.76  E-value=0.0023  Score=45.41  Aligned_cols=21  Identities=19%  Similarity=0.385  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      .+++.|++|+||||++..+..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.72  E-value=0.003  Score=43.48  Aligned_cols=20  Identities=15%  Similarity=0.406  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCcHHHHHHHhh
Q 028466           11 KLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~   30 (208)
                      -|+|-|..||||||+++.|.
T Consensus         2 lI~ieG~dGsGKST~~~~L~   21 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLS   21 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48888999999999999775

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.72  E-value=0.0028  Score=44.30  Aligned_cols=20  Identities=20%  Similarity=0.438  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCcHHHHHHHhh
Q 028466           11 KLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~   30 (208)
                      .+++.|++|+||||+++.+.
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la   57 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLA   57 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHH
Confidence            58999999999999998775

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.69  E-value=0.0031  Score=45.30  Aligned_cols=20  Identities=20%  Similarity=0.252  Sum_probs=16.6

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q 028466           12 LVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~   31 (208)
                      +++.|++|+|||++++.+..
T Consensus        49 l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHH
Confidence            34569999999999998864

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.66  E-value=0.003  Score=45.41  Aligned_cols=22  Identities=23%  Similarity=0.311  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      -.+++.|++|+|||++++.+..
T Consensus        39 ~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHH
Confidence            3589999999999999998875

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.0032  Score=43.70  Aligned_cols=20  Identities=15%  Similarity=0.285  Sum_probs=17.3

Q ss_pred             eEEEEcCCCCcHHHHHHHhh
Q 028466           11 KLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~   30 (208)
                      -|+|.|++||||+|+...|.
T Consensus         5 iI~I~GppGSGKgT~ak~La   24 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMA   24 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            46777999999999999875

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.63  E-value=0.0028  Score=49.19  Aligned_cols=21  Identities=33%  Similarity=0.618  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~   30 (208)
                      =+|+++||+|||||-|.++|.
T Consensus        50 sNILliGPTGvGKTlLAr~LA   70 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLA   70 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHH
Confidence            489999999999999999874

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.0032  Score=45.21  Aligned_cols=21  Identities=19%  Similarity=0.319  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      .+++.|++|+|||++++.+..
T Consensus        47 ~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEeeCCCCCCccHHHHHHHH
Confidence            489999999999999998863

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.58  E-value=0.0033  Score=43.93  Aligned_cols=22  Identities=36%  Similarity=0.591  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .+++.|++|+||||++..+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            5899999999999999988743

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.0056  Score=42.31  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      +-|.|+|..||||||+.+.|....+
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G~   28 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLGI   28 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCCC
Confidence            6688999999999999998864443

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.41  E-value=0.0028  Score=48.28  Aligned_cols=22  Identities=36%  Similarity=0.638  Sum_probs=18.2

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~   30 (208)
                      +=++++||++|||||++++.|.
T Consensus        43 k~n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHH
Confidence            3467999999999999997554

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.39  E-value=0.0066  Score=41.81  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhc
Q 028466           10 YKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~   31 (208)
                      +-|.|.|..||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6789999999999999998754

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.36  E-value=0.0051  Score=45.31  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=20.8

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      ..++-|.|.|++|||||||.+.|.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHH
Confidence            346889999999999999988774

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.36  E-value=0.0074  Score=43.89  Aligned_cols=25  Identities=20%  Similarity=0.239  Sum_probs=20.7

Q ss_pred             CCcceeEEEEcCCCCcHHHHHHHhh
Q 028466            6 ALAKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         6 ~~~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      ..+.+=|.|-|++|||||||...+.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHH
Confidence            3456889999999999999987653

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.26  E-value=0.0042  Score=44.77  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      -.|++.|++|+|||+|++.+...
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHHH
Confidence            45899999999999999998643

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.07  E-value=0.0077  Score=40.47  Aligned_cols=26  Identities=19%  Similarity=0.335  Sum_probs=22.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      ..-|++.|++|+||||+.-.|....+
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            45689999999999999999887654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.02  E-value=0.0063  Score=41.98  Aligned_cols=19  Identities=26%  Similarity=0.352  Sum_probs=16.8

Q ss_pred             EEEEcCCCCcHHHHHHHhh
Q 028466           12 LVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~   30 (208)
                      |+|-|..||||||+++.|.
T Consensus         5 IviEG~dGsGKsT~~~~L~   23 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVV   23 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6777999999999999875

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.0054  Score=43.05  Aligned_cols=21  Identities=19%  Similarity=0.401  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      .|+|-|..||||||+++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            577779999999999997764

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.89  E-value=0.0088  Score=40.22  Aligned_cols=26  Identities=12%  Similarity=0.300  Sum_probs=22.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcCCC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      ..-|++.|++|+||||+.-.|....+
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcCC
Confidence            45689999999999999999886554

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.88  E-value=0.004  Score=46.36  Aligned_cols=20  Identities=20%  Similarity=0.557  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCcHHHHHHHhh
Q 028466           11 KLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~   30 (208)
                      .+++.|++|+|||+|++++.
T Consensus        30 ~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHH
Confidence            58999999999999999875

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.88  E-value=0.0052  Score=45.74  Aligned_cols=26  Identities=19%  Similarity=0.419  Sum_probs=23.0

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      |+.++|.|=|..|+||||+++.|...
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHH
Confidence            66789999999999999999988643

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.85  E-value=0.0015  Score=44.61  Aligned_cols=18  Identities=22%  Similarity=0.577  Sum_probs=16.1

Q ss_pred             EEEcCCCCcHHHHHHHhh
Q 028466           13 VFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        13 ~vvG~~~~GKStli~~l~   30 (208)
                      +|+|+.|+|||||++++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            578999999999999874

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.0088  Score=40.94  Aligned_cols=24  Identities=21%  Similarity=0.203  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      -+.|.|++|+|||+|.-.+..+..
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            467889999999999998875443

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.62  E-value=0.0089  Score=45.10  Aligned_cols=22  Identities=23%  Similarity=0.452  Sum_probs=19.5

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhh
Q 028466            9 KYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~   30 (208)
                      .-+++++||+|||||-|.++|.
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA   89 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLA   89 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHH
T ss_pred             CcceeeeCCCCccHHHHHHHHH
Confidence            4569999999999999999885

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.59  E-value=0.012  Score=44.36  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=20.4

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      ++.-.+++.||||+|||+|...+.
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~  175 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALL  175 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHH
Confidence            344578999999999999999875

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.0093  Score=41.26  Aligned_cols=20  Identities=20%  Similarity=0.385  Sum_probs=16.4

Q ss_pred             eEEEEcCCCCcHHHHHHHhh
Q 028466           11 KLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~   30 (208)
                      =|+|-|..||||||+++.|.
T Consensus         5 lI~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           5 LIVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            36667999999999888764

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.55  E-value=0.0066  Score=44.33  Aligned_cols=18  Identities=28%  Similarity=0.523  Sum_probs=16.2

Q ss_pred             EEEEcCCCCcHHHHHHHh
Q 028466           12 LVFLGDQSVGKTSIITRF   29 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l   29 (208)
                      .+|+|+.|+|||++++++
T Consensus        27 nvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEECCTTTCSTHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHH
Confidence            378899999999999977

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.43  E-value=0.011  Score=41.33  Aligned_cols=23  Identities=13%  Similarity=0.223  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      -++|.|++|+|||+|.-.+....
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            46788999999999999887543

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.34  E-value=0.014  Score=38.96  Aligned_cols=27  Identities=15%  Similarity=0.284  Sum_probs=22.4

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcCCC
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYDKF   34 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~~~   34 (208)
                      ...-|++.|++|+||||+.-.|....+
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            346789999999999999988876654

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.29  E-value=0.0059  Score=44.44  Aligned_cols=21  Identities=14%  Similarity=0.278  Sum_probs=15.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~   30 (208)
                      .-|+|.|++|+||||+.++|.
T Consensus         5 pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHH
Confidence            359999999999999999764

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.15  E-value=0.013  Score=43.20  Aligned_cols=20  Identities=30%  Similarity=0.609  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCcHHHHHHHhh
Q 028466           11 KLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~   30 (208)
                      .++++|++|||||.|...|.
T Consensus        54 ~~lf~Gp~GvGKT~lak~la   73 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLS   73 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHH
Confidence            58899999999999999875

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.00  E-value=0.016  Score=40.21  Aligned_cols=21  Identities=19%  Similarity=0.358  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q 028466           12 LVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~   32 (208)
                      +.|.|++|+|||.|+..+...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999988643

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.98  E-value=0.015  Score=40.83  Aligned_cols=21  Identities=24%  Similarity=0.468  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      -|+|=|..||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            466679999999999998863

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.92  E-value=0.016  Score=41.82  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .-|+|+|..|+|||||...+...
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999987643

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.91  E-value=0.015  Score=40.84  Aligned_cols=23  Identities=17%  Similarity=0.182  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      -++|.|++|+|||+|.-.+....
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            46788999999999999887544

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.81  E-value=0.02  Score=42.46  Aligned_cols=23  Identities=13%  Similarity=0.135  Sum_probs=20.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .++|.|=|..|+||||+++.|..
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHS
T ss_pred             eEEEEEECCccCCHHHHHHHHHH
Confidence            48899999999999999998864

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.72  E-value=0.018  Score=40.32  Aligned_cols=24  Identities=25%  Similarity=0.481  Sum_probs=20.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .--++|.|++|+|||+|.-++..+
T Consensus        26 gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          26 DSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            345788899999999999988754

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.71  E-value=0.016  Score=44.00  Aligned_cols=19  Identities=16%  Similarity=0.417  Sum_probs=16.5

Q ss_pred             EEEEcCCCCcHHHHHHHhh
Q 028466           12 LVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~   30 (208)
                      .+|+|+.|+|||++++++.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3588999999999999873

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.62  E-value=0.019  Score=42.50  Aligned_cols=23  Identities=17%  Similarity=0.280  Sum_probs=20.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhc
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      -++|.|=|..|+||||+++.|..
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCcCCCHHHHHHHHHH
Confidence            46788999999999999998863

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.48  E-value=0.022  Score=42.00  Aligned_cols=20  Identities=20%  Similarity=0.388  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q 028466           12 LVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~   31 (208)
                      +++.|+||+|||.|.+.+-+
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            45579999999999998864

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.46  E-value=0.023  Score=39.05  Aligned_cols=20  Identities=15%  Similarity=0.248  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q 028466           12 LVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~   31 (208)
                      +++.|++|+||||++..+..
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999997653

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.33  E-value=0.022  Score=39.39  Aligned_cols=21  Identities=19%  Similarity=0.202  Sum_probs=17.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~   30 (208)
                      .=|+|=|..||||||+++.|.
T Consensus         4 k~I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHH
Confidence            347788999999999998775

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.25  E-value=0.025  Score=39.72  Aligned_cols=19  Identities=42%  Similarity=0.618  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHhh
Q 028466           12 LVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~   30 (208)
                      +++.|++|+|||++++.+.
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~   55 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLA   55 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            7888999999999999764

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.17  E-value=0.024  Score=39.47  Aligned_cols=23  Identities=26%  Similarity=0.247  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcCC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      -++|.|++|+|||+|.-.+..+-
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            46788999999999999887543

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.10  E-value=0.027  Score=39.42  Aligned_cols=21  Identities=19%  Similarity=0.237  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      -|.|.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999998854

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.01  E-value=0.025  Score=38.63  Aligned_cols=25  Identities=32%  Similarity=0.377  Sum_probs=21.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      +++=.+++.|++++|||.|...|..
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEEEECCCCccHHHHHHHHHH
Confidence            4566789999999999999998763

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.96  E-value=0.029  Score=39.26  Aligned_cols=24  Identities=17%  Similarity=0.159  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~~~~   33 (208)
                      --++|.|++|+|||+|.-++....
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            357888999999999999987543

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=92.89  E-value=0.033  Score=42.40  Aligned_cols=21  Identities=14%  Similarity=0.316  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q 028466           12 LVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~   32 (208)
                      |+|.|+.|+||||.+..++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            889999999999999988753

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=92.60  E-value=0.034  Score=39.72  Aligned_cols=20  Identities=10%  Similarity=0.348  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q 028466           12 LVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~   31 (208)
                      ++|.|.+|+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67889999999999888763

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.54  E-value=0.024  Score=40.96  Aligned_cols=15  Identities=33%  Similarity=0.521  Sum_probs=12.8

Q ss_pred             EEEEcCCCCcHHHHH
Q 028466           12 LVFLGDQSVGKTSII   26 (208)
Q Consensus        12 i~vvG~~~~GKStli   26 (208)
                      ++|+|++|+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            688899999999753

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.44  E-value=0.035  Score=38.30  Aligned_cols=21  Identities=24%  Similarity=0.384  Sum_probs=17.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~   30 (208)
                      --++|.|++|+|||+|.-.+.
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHH
Confidence            457788999999999987765

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.27  E-value=0.035  Score=42.39  Aligned_cols=21  Identities=19%  Similarity=0.411  Sum_probs=18.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~   30 (208)
                      -.++|+|.+|+|||+++..++
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHH
Confidence            459999999999999987765

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.00  E-value=0.034  Score=40.51  Aligned_cols=15  Identities=27%  Similarity=0.609  Sum_probs=12.9

Q ss_pred             EEEEcCCCCcHHHHH
Q 028466           12 LVFLGDQSVGKTSII   26 (208)
Q Consensus        12 i~vvG~~~~GKStli   26 (208)
                      ++|.|++|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            788999999999654

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.88  E-value=0.049  Score=39.41  Aligned_cols=25  Identities=12%  Similarity=0.205  Sum_probs=20.8

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      +.=|++|+|++|+|||+|+..+..+
T Consensus        42 rGQr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          42 RGQRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             TTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCCeeeEeCCCCCCHHHHHHHHHHH
Confidence            3458999999999999999887643

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.81  E-value=0.066  Score=33.28  Aligned_cols=24  Identities=8%  Similarity=0.246  Sum_probs=21.5

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhh
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~   30 (208)
                      .+.+.|.+.|.+|+|||++.+.|.
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHH
Confidence            357899999999999999999885

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=91.40  E-value=0.053  Score=38.53  Aligned_cols=19  Identities=11%  Similarity=0.214  Sum_probs=16.5

Q ss_pred             EEEEcCCCCcHHHHHHHhh
Q 028466           12 LVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~   30 (208)
                      .+|.|++|+|||+|+-.+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5689999999999998764

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=91.38  E-value=0.23  Score=35.40  Aligned_cols=21  Identities=24%  Similarity=0.264  Sum_probs=17.3

Q ss_pred             eEEEEcCCCCcHHHHHHHhhc
Q 028466           11 KLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~   31 (208)
                      =+.+.|++++|||+|.-.+..
T Consensus        59 itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHH
Confidence            356789999999999987764

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.28  E-value=0.05  Score=39.94  Aligned_cols=20  Identities=35%  Similarity=0.672  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCcHHHHHHHhh
Q 028466           11 KLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~   30 (208)
                      .++++|++|+|||.+.+.|.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la   74 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLA   74 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHH
Confidence            57888999999999999765

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.17  E-value=0.076  Score=37.97  Aligned_cols=25  Identities=20%  Similarity=0.292  Sum_probs=21.2

Q ss_pred             CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (208)
Q Consensus         7 ~~~~~i~vvG~~~~GKStli~~l~~   31 (208)
                      .++--+.+.|++++|||+|++.+..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHH
Confidence            4566788999999999999998763

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=90.93  E-value=0.59  Score=30.83  Aligned_cols=101  Identities=9%  Similarity=0.079  Sum_probs=55.5

Q ss_pred             cceeEEEEcC-CCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh----------------
Q 028466            8 AKYKLVFLGD-QSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------------   70 (208)
Q Consensus         8 ~~~~i~vvG~-~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------------   70 (208)
                      +.+||.|+|. .++|-+.+. .|..+......                 ..+.+.++|.+....                
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~-~La~g~v~g~~-----------------~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~   84 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLF-KLASGEVFGQD-----------------QPIALKLLGSERSFQALEGVAMELEDSLYPL   84 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHH-HHHHTTTTCTT-----------------CCEEEEEECCGGGHHHHHHHHHHHHTTTCTT
T ss_pred             CCcEEEEECCCcHHHHHHHH-HHHcCcccCCC-----------------ceEEEEEecCccccchhcchhhhhccccccc
Confidence            5789999996 667866555 45544432211                 112345555544211                


Q ss_pred             -----hccchhhhhccCCEEEEEEeCCChh------hH----HhHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 028466           71 -----FRSLIPSYIRDSSVAVIVYDVASRQ------SF----LNTTKWVEEVRTERGSDVIIVLVGNKTDL  126 (208)
Q Consensus        71 -----~~~~~~~~~~~~d~~i~v~d~~~~~------s~----~~~~~~~~~~~~~~~~~~~iivv~nK~D~  126 (208)
                           ........+.++|++|++-......      -+    .-++.+...+..+...+..+++|.|-.|.
T Consensus        85 ~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~  155 (175)
T d7mdha1          85 LREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT  155 (175)
T ss_dssp             EEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             ccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHH
Confidence                 0111233477899999987665321      11    11334445555555556677788787774

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.80  E-value=0.53  Score=32.05  Aligned_cols=65  Identities=17%  Similarity=0.100  Sum_probs=44.3

Q ss_pred             EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEE-EEEeCCCCcC
Q 028466           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIV-LVGNKTDLVD  128 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~~~  128 (208)
                      +.+.++|+++...  ......+..+|.++++...+ ..++....+....+.+   .+.|++ +|.|+.+...
T Consensus       112 ~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~---~~~~~~giv~N~~~~~~  177 (237)
T d1g3qa_         112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK---AGLAILGFVLNRYGRSD  177 (237)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH---TTCEEEEEEEEEETSCT
T ss_pred             CCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhh---hhhhhhhhhhccccccc
Confidence            5689999987543  33444567899999999874 4566666665555543   346654 7789998643

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=90.75  E-value=0.071  Score=39.87  Aligned_cols=19  Identities=26%  Similarity=0.468  Sum_probs=15.3

Q ss_pred             eEEEEcCCCCcHHHHHHHh
Q 028466           11 KLVFLGDQSVGKTSIITRF   29 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l   29 (208)
                      -.+|.|++|+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            4677899999999987543

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=89.00  E-value=0.14  Score=32.18  Aligned_cols=25  Identities=8%  Similarity=0.191  Sum_probs=18.2

Q ss_pred             CCcceeE-EEEcCCCCcHHHHHHHhh
Q 028466            6 ALAKYKL-VFLGDQSVGKTSIITRFM   30 (208)
Q Consensus         6 ~~~~~~i-~vvG~~~~GKStli~~l~   30 (208)
                      ..+++++ +|.++.|+|||.++-.+.
T Consensus         4 ~~~~~~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           4 VPQSFQVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             CCSSCEEEEEECCTTSCTTTHHHHHH
T ss_pred             CccCCCEEEEEeCCCCCHHHHHHHHH
Confidence            3455666 557999999998886544

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.53  E-value=0.13  Score=34.30  Aligned_cols=21  Identities=19%  Similarity=0.340  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q 028466           12 LVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~~~   32 (208)
                      ++|+|...||||.+..++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998744

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.29  E-value=0.15  Score=36.47  Aligned_cols=24  Identities=29%  Similarity=0.488  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         9 ~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      .=|++|+|.+|+|||+|+-.+..+
T Consensus        68 GQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          68 GGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEeeCCCCCCHHHHHHHHHHH
Confidence            347999999999999998887643

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.26  E-value=0.15  Score=35.59  Aligned_cols=19  Identities=21%  Similarity=0.382  Sum_probs=16.7

Q ss_pred             EEEEcCCCCcHHHHHHHhh
Q 028466           12 LVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~   30 (208)
                      ++|.|+..+||||+++++-
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            5788999999999999863

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.84  E-value=0.16  Score=36.31  Aligned_cols=20  Identities=25%  Similarity=0.396  Sum_probs=16.6

Q ss_pred             eEEEEcCCCCcHHHHHHHhh
Q 028466           11 KLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~   30 (208)
                      -+.|.|++++|||+|.-.+.
T Consensus        62 i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHH
Confidence            35688999999999987665

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.72  E-value=0.16  Score=35.66  Aligned_cols=21  Identities=19%  Similarity=0.379  Sum_probs=18.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHhh
Q 028466           10 YKLVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        10 ~~i~vvG~~~~GKStli~~l~   30 (208)
                      .-|+|.|++|+||+.+.+.+-
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih   44 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIH   44 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHH
Confidence            458999999999999998774

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=87.57  E-value=0.17  Score=35.01  Aligned_cols=19  Identities=16%  Similarity=0.415  Sum_probs=16.8

Q ss_pred             EEEEcCCCCcHHHHHHHhh
Q 028466           12 LVFLGDQSVGKTSIITRFM   30 (208)
Q Consensus        12 i~vvG~~~~GKStli~~l~   30 (208)
                      ++|.|+..+||||+++++.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6788999999999999763

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=87.45  E-value=1.2  Score=28.45  Aligned_cols=50  Identities=18%  Similarity=0.157  Sum_probs=29.8

Q ss_pred             hhhccCCEEEEEEeCCChh------h----HHhHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 028466           77 SYIRDSSVAVIVYDVASRQ------S----FLNTTKWVEEVRTERGSDVIIVLVGNKTDL  126 (208)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~------s----~~~~~~~~~~~~~~~~~~~~iivv~nK~D~  126 (208)
                      ..++++|++|+.......+      -    ..-++++...+..+..++..++++.|..|.
T Consensus        76 ~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv  135 (154)
T d1y7ta1          76 VAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT  135 (154)
T ss_dssp             HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             hhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHH
Confidence            4578999999987655321      1    122344445555554445666677777774

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.79  E-value=0.46  Score=30.54  Aligned_cols=24  Identities=4%  Similarity=0.141  Sum_probs=17.5

Q ss_pred             cceeEEEEcC-CCCcHHHHHHHhhcC
Q 028466            8 AKYKLVFLGD-QSVGKTSIITRFMYD   32 (208)
Q Consensus         8 ~~~~i~vvG~-~~~GKStli~~l~~~   32 (208)
                      +.+||.|+|. .++|.+.... |..+
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~-l~~~   26 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYS-IGNG   26 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHH-HHTT
T ss_pred             CceEEEEECCCCHHHHHHHHH-HHHH
Confidence            3589999995 7889887664 4433

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=86.46  E-value=0.15  Score=37.11  Aligned_cols=15  Identities=47%  Similarity=0.731  Sum_probs=13.5

Q ss_pred             EEEcCCCCcHHHHHH
Q 028466           13 VFLGDQSVGKTSIIT   27 (208)
Q Consensus        13 ~vvG~~~~GKStli~   27 (208)
                      +++|.+|+|||||-.
T Consensus        18 lfFGLSGTGKTTLs~   32 (313)
T d2olra1          18 VFFGLSGTGKTTLST   32 (313)
T ss_dssp             EEECSTTSSHHHHHC
T ss_pred             EEEccCCCCccccee
Confidence            689999999999874

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=85.79  E-value=0.25  Score=35.10  Aligned_cols=22  Identities=23%  Similarity=0.363  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCcHHHHHHHhhcC
Q 028466           11 KLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus        11 ~i~vvG~~~~GKStli~~l~~~   32 (208)
                      -+.|.|++++|||+|.-.+...
T Consensus        56 itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHH
Confidence            3578899999999998776533

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=85.71  E-value=0.25  Score=34.86  Aligned_cols=87  Identities=15%  Similarity=0.166  Sum_probs=51.4

Q ss_pred             EEEEEEecCCchhhcc-chhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeE-EEEEeCCCCcCccCcCH
Q 028466           58 VRLQLWDTAGQERFRS-LIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVII-VLVGNKTDLVDKRQVSI  134 (208)
Q Consensus        58 ~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~i-ivv~nK~D~~~~~~~~~  134 (208)
                      +.+.++|+|+.-.... .......-+|.++++.+.. ..++.........+..... .+..+ -+|.|+.+....    .
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~-~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~----~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANE----Y  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCC----H
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccchh-hhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCc----c
Confidence            5688999987443222 2222345688888888764 5566665555555544432 23332 366798876432    4


Q ss_pred             HHHHHHHHHcCCeEE
Q 028466          135 EEGEAKARELNVMFI  149 (208)
Q Consensus       135 ~~~~~~~~~~~~~~~  149 (208)
                      +..+.+.+.++.+++
T Consensus       191 ~~~~~~~~~~~~~~~  205 (269)
T d1cp2a_         191 ELLDAFAKELGSQLI  205 (269)
T ss_dssp             HHHHHHHHHHTCCEE
T ss_pred             chhhhhHhhcCCeEE
Confidence            456667777776654

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=85.55  E-value=0.17  Score=36.97  Aligned_cols=16  Identities=44%  Similarity=0.661  Sum_probs=14.0

Q ss_pred             EEEEcCCCCcHHHHHH
Q 028466           12 LVFLGDQSVGKTSIIT   27 (208)
Q Consensus        12 i~vvG~~~~GKStli~   27 (208)
                      -+++|.+|+|||||-.
T Consensus        17 alffGLSGTGKTTLs~   32 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEEECTTSCHHHHTC
T ss_pred             EEEEccCCCCcccccc
Confidence            4788999999999865

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.30  E-value=0.19  Score=36.73  Aligned_cols=16  Identities=38%  Similarity=0.619  Sum_probs=14.0

Q ss_pred             EEEEcCCCCcHHHHHH
Q 028466           12 LVFLGDQSVGKTSIIT   27 (208)
Q Consensus        12 i~vvG~~~~GKStli~   27 (208)
                      -+++|.+|+|||||--
T Consensus        17 alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             EEEECCTTSSHHHHHC
T ss_pred             EEEEccCCCCccccee
Confidence            4689999999999984

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.30  E-value=3.3  Score=25.98  Aligned_cols=49  Identities=16%  Similarity=0.264  Sum_probs=29.7

Q ss_pred             hhhccCCEEEEEEeCCCh------hhHH----hHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 028466           77 SYIRDSSVAVIVYDVASR------QSFL----NTTKWVEEVRTERGSDVIIVLVGNKTDL  126 (208)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~------~s~~----~~~~~~~~~~~~~~~~~~iivv~nK~D~  126 (208)
                      ..++++|++|+..-....      +-+.    -++++...+..+ +++..++++.|-.|.
T Consensus        64 ~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvD~  122 (144)
T d1mlda1          64 DCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISNPVNS  122 (144)
T ss_dssp             HHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHHH
T ss_pred             HHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchhh
Confidence            347889999987654321      1122    234455555555 456777888888884

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.48  E-value=0.27  Score=35.35  Aligned_cols=25  Identities=28%  Similarity=0.450  Sum_probs=20.2

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      +.=|++|+|++|+|||+|+-.+..+
T Consensus        67 ~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          67 RGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             TTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCEEEeecCCCCChHHHHHHHHHh
Confidence            4458899999999999998766543

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=81.80  E-value=0.45  Score=31.98  Aligned_cols=19  Identities=26%  Similarity=0.392  Sum_probs=16.0

Q ss_pred             eEEEEcCC-CCcHHHHHHHh
Q 028466           11 KLVFLGDQ-SVGKTSIITRF   29 (208)
Q Consensus        11 ~i~vvG~~-~~GKStli~~l   29 (208)
                      |+.|.|-. ||||||+.-.|
T Consensus         3 ~~~i~gt~~GVGKTtvs~~L   22 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCAL   22 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHH
Confidence            68889995 99999987755

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=81.00  E-value=0.38  Score=34.33  Aligned_cols=25  Identities=24%  Similarity=0.474  Sum_probs=19.9

Q ss_pred             cceeEEEEcCCCCcHHHHHHHhhcC
Q 028466            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (208)
Q Consensus         8 ~~~~i~vvG~~~~GKStli~~l~~~   32 (208)
                      +.=|+.|+|.+|+|||+|+-.+...
T Consensus        66 ~GQr~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          66 RGQRELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             TTCBCBEEESSSSSHHHHHHHHHHT
T ss_pred             CCceEeeccCCCCChHHHHHHHHhh
Confidence            4457899999999999998765433