Citrus Sinensis ID: 028505

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MSNPHSDTIPLHASSQSDIDEIENLINASPATVLPARPPSPPRPATIPVSSAPFIQSNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKFLKQSYGMKQSCMIWLFPLRLNQIDLRYSLLHLHYLLLVL
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccEEEEccccccccccccccccccHHHHHHHHHHHHHHccccccccEEEEEEHHHHHHHHHHHHcccccHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHcccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccEEEcccccccccHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHccccccHEEEEccccHcHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
msnphsdtiplhassqsdIDEIENLinaspatvlparppspprpatipvssapfiqsnippppptssnqkvpsvpvppplpsstisggsrpniastgfgsppntltepvwDTVKRDLSRIVSNLklvvfpnpyredpgkalrdwdlwgpFFFIVFLGLTLSWSASVKKFLKQSYGMKQSCMIWLFPLRLNQIDLRYSLLHLHYLLLVL
Flexible Loop (DISEMBL)
msnphsdtiplhassqSDIDEIENLINASPATVLPARPPSPPRPATIPVSSAPFIQSNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIAStgfgsppntltePVWDTVKRDLSRIVsnlklvvfpnpyreDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKFLKQSYGMKQSCMIWLFPLRLNQIDLRYSLLHLHYLLLVL
Low Complexity Region (SEG)
MSNPHSDTIPLHASSQSDIDEIENLINASpatvlparppspprpatipvsSAPFIQSNIpppppTSSNQKvpsvpvppplpssTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKFLKQSYGMKQSCMIWLFPLRLNQIDlrysllhlhylllvl
Disordered region (IsUnstruct)
*********************************************************************************************************TEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKFLKQSYGMKQSCMIWLFPLRLNQIDLRYSLLHLHYLLLV*
Disordered Region (DISOPRED)
*****SD****HAS*****DEIENLINAS***************************************************************************LTEPVWDTVKRDLSRIVSNLKLVVFPNPY******ALRDWDLWGPFFFIVFLGLTLSWSASVKKFLKQSYGMKQSCMIWLFPLRLNQIDLRYSLLHLHYLLLVL
Disordered Region (DISEMBL)
***********HASSQSDIDEIENLINASPATVLPARPPSPPRPATIPVSSAPFIQSNIPPP**************PPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKFLKQSYGMKQSCMIWLFPLRLNQIDLRYSLLHLHYLLLVL
Disordered Region (DISPRO)
***************QSDIDEIENLINASPATVL*******************************************************************PNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKFLKQSYGMKQSCMIWLFPLRLNQIDLRYSLLHLHYLLLVL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNPHSDTIPLHASSQSDIDEIENLINASPATVLPARPPSPPRPATIPVSSAPFIQSNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKFLKQSYGMKQSCMIWLFPLRLNQIDLRYSLLHLHYLLLVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	208	2.2.26 [Sep-21-2011]
Q54RZ2	182	Protein YIPF6 homolog OS=	yes	no	0.322	0.368	0.442	2e-07
Q28CH8	233	Protein YIPF6 OS=Xenopus	yes	no	0.307	0.274	0.411	0.0001
Q6IQ85	240	Protein YIPF6 OS=Danio re	yes	no	0.259	0.225	0.431	0.0002
Q9P6P8	225	Protein YIP4 OS=Schizosac	yes	no	0.548	0.506	0.279	0.0004
P53093	235	Protein YIP4 OS=Saccharom	yes	no	0.365	0.323	0.390	0.0005

>sp|Q54RZ2|YIPF6_DICDI Protein YIPF6 homolog OS=Dictyostelium discoideum GN=yipf6 PE=3 SV=2

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 102 PNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLS 161
           PNTL EPV  T+ RDL  I   L  V+ P   R +    LRDWDLWGP    + + + LS
Sbjct: 7   PNTLDEPVIQTILRDLKMIGFKLYHVILP---RGNAANVLRDWDLWGPLILCLVMAIFLS 63

Query: 162 WSASVKKFLK 171
            SA  +K L+
Sbjct: 64  ISAEEQKALE 73

Dictyostelium discoideum (taxid: 44689)

>sp|Q28CH8|YIPF6_XENTR Protein YIPF6 OS=Xenopus tropicalis GN=yipf6 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 93  IASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFF 152
           +AST      +TL EPV DT+ RDL  + +    V++P    +     LRDWDLWGP   
Sbjct: 38  MASTSQEDDLSTLDEPVKDTIMRDLKAVGNKFLHVMYP----KKSTTLLRDWDLWGPLVL 93

Query: 153 IVFLGLTL 160
            V L L L
Sbjct: 94  CVSLALML 101

Xenopus tropicalis (taxid: 8364)

>sp|Q6IQ85|YIPF6_DANRE Protein YIPF6 OS=Danio rerio GN=yipf6 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTL 160
           +TL EPV DT+ RDL  +      V++P    +     LRDWDLWGP    V L L L
Sbjct: 55  STLDEPVKDTILRDLRAVGQKFVHVMYP----KKSSALLRDWDLWGPLLLCVTLALML 108

Danio rerio (taxid: 7955)

>sp|Q9P6P8|YIP4_SCHPO Protein YIP4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.13c PE=1 SV=1

 Score = 44.7 bits (104), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 15/129 (11%)

Query: 56  QSNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKR 115
             N+    P  S+  V S  + P      I+G S      TG     ++L EP+  T+  
Sbjct: 16  MENLLRMDPVRSSLDVESRAIEP----DNIAGESIVETRFTG----GDSLDEPIRVTLFN 67

Query: 116 DLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKFLKQSYG 175
           +   I   L  V++P        + LRDWDLWGP  F + + L L  + S  K  ++S  
Sbjct: 68  EFRAIGEKLVYVLYPKN-----AQVLRDWDLWGPLIFSLVIALAL--ALSTDKIERESVF 120

Query: 176 MKQSCMIWL 184
                +IW 
Sbjct: 121 TVVVALIWF 129

May be involved in proper membrane localization of Rab GTPases.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P53093|YIP4_YEAST Protein YIP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIP4 PE=1 SV=2

 Score = 44.3 bits (103), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 41/87 (47%), Gaps = 11/87 (12%)

Query: 86  SGGSRPNIASTGFGSPP-NTLTEPVWDTVKRDLSRIVSNLKLVVFPN------PYREDPG 138
           SGG   NI  T   S    TL E V  T+KRD+  I S LK VV+P+      P  +  G
Sbjct: 24  SGGVADNIGGTMQNSGSRGTLDETVLQTLKRDVVEINSRLKQVVYPHFPSFFSPSDDGIG 83

Query: 139 KALRD----WDLWGPFFFIVFLGLTLS 161
            A  D     DLW P  FI+   L +S
Sbjct: 84  AADNDISANCDLWAPLAFIILYSLFVS 110

May be involved in proper membrane localization of Rab GTPases.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
255585749	177	conserved hypothetical protein [Ricinus	0.764	0.898	0.809	1e-60
224125970	284	predicted protein [Populus trichocarpa]	0.774	0.566	0.774	1e-56
449451761	278	PREDICTED: protein YIPF6-like [Cucumis s	0.774	0.579	0.797	1e-56
224143749	283	predicted protein [Populus trichocarpa]	0.774	0.568	0.767	1e-56
225446060	282	PREDICTED: protein YIPF6 [Vitis vinifera	0.783	0.578	0.794	6e-55
18398861	281	Integral membrane Yip1-like protein [Ara	0.769	0.569	0.755	2e-54
110740688	240	hypothetical protein [Arabidopsis thalia	0.769	0.666	0.755	2e-54
297836756	278	integral membrane Yip1 family protein [A	0.774	0.579	0.755	2e-53
21553537	281	unknown [Arabidopsis thaliana]	0.769	0.569	0.744	3e-53
226491019	274	LOC100284081 [Zea mays] gi|195639364|gb|	0.754	0.572	0.712	5e-53

>gi|255585749|ref|XP_002533555.1| conserved hypothetical protein [Ricinus communis] gi|223526571|gb|EEF28827.1| conserved hypothetical protein [Ricinus communis]

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 136/168 (80%), Positives = 142/168 (84%), Gaps = 9/168 (5%)

Query: 5   HSDTIPLHASSQSDIDEIENLINAS----PATVLPARPPSPPRPATIPVSSAPFIQSNIP 60
           HSDTIPLHASSQSDIDEIENLINAS    PATVLPARPPSPPR   IPVSS+PFIQSN+P
Sbjct: 3   HSDTIPLHASSQSDIDEIENLINASVQSGPATVLPARPPSPPR---IPVSSSPFIQSNLP 59

Query: 61  PPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRI 120
           PP PTS          PPP P+S  S GS  NI ++GFGS PNTLTEPVWDTVKRDLSRI
Sbjct: 60  PPRPTSQKPPSVPAAPPPPPPASNNSHGS--NIGASGFGSAPNTLTEPVWDTVKRDLSRI 117

Query: 121 VSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 168
           VSNLKLVVFPNP+REDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK
Sbjct: 118 VSNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 165

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125970|ref|XP_002329629.1| predicted protein [Populus trichocarpa] gi|222870510|gb|EEF07641.1| predicted protein [Populus trichocarpa]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 134/173 (77%), Positives = 143/173 (82%), Gaps = 12/173 (6%)

Query: 5   HSDTIPLHASSQSDIDEIENLINAS----PATVLPARPPSPPRPATIPVSSAPFIQSNIP 60
           +SDTIPLHASSQSDIDEIENLIN+S    P+TVLPARPPSPPR   IPVSS+PFIQSN+P
Sbjct: 4   NSDTIPLHASSQSDIDEIENLINSSIQSSPSTVLPARPPSPPR---IPVSSSPFIQSNLP 60

Query: 61  PPPPTSSN---QKVPSVPVPPPLPSSTISGGSRP--NIASTGFGSPPNTLTEPVWDTVKR 115
           PPP  +     QK PS     PLP    S G+    NIA+TGFGS PNTLTEPVWDT+KR
Sbjct: 61  PPPAQAQLPTLQKPPSAVPSAPLPPLPPSTGNSAGGNIAATGFGSLPNTLTEPVWDTIKR 120

Query: 116 DLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 168
           DLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK
Sbjct: 121 DLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451761|ref|XP_004143629.1| PREDICTED: protein YIPF6-like [Cucumis sativus] gi|449520002|ref|XP_004167023.1| PREDICTED: protein YIPF6-like [Cucumis sativus]

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 134/168 (79%), Positives = 148/168 (88%), Gaps = 7/168 (4%)

Query: 5   HSDTIPLHASSQSDIDEIENLINAS----PATVLPARPPSPPRPATIPVSSAPFIQSNIP 60
           HSDTIPLH SSQSDIDEIENLINAS    P+TVLPARPPSPPR A+IPVSS+PF+QSN+P
Sbjct: 3   HSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPR-ASIPVSSSPFLQSNLP 61

Query: 61  PPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRI 120
           P PP S+ QK P+V   PP     +SG  RP+++++GFGSPPNTLTEPVWDTVKRDLSRI
Sbjct: 62  PLPPKSTIQKPPTVFPTPP--PLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRI 119

Query: 121 VSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 168
           VSNLKLVVFPNP+REDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK
Sbjct: 120 VSNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 167

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143749|ref|XP_002325060.1| predicted protein [Populus trichocarpa] gi|118484354|gb|ABK94054.1| unknown [Populus trichocarpa] gi|222866494|gb|EEF03625.1| predicted protein [Populus trichocarpa]

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 132/172 (76%), Positives = 142/172 (82%), Gaps = 11/172 (6%)

Query: 5   HSDTIPLHASSQSDIDEIENLINAS----PATVLPARPPSPPRPATIPVSSAPFIQSNIP 60
           +SDTIPLHASSQSDIDEIENLIN+S    P+TVLPARPPSPPR   IPVS++PFIQSN+P
Sbjct: 4   NSDTIPLHASSQSDIDEIENLINSSIQSSPSTVLPARPPSPPR---IPVSASPFIQSNLP 60

Query: 61  PPPPTSSN--QKVPSVPVPPPLPSSTISGGSRP--NIASTGFGSPPNTLTEPVWDTVKRD 116
           PP P      QK PS+    PLP    S G+    N ++ GFGSPPNTLTEPVWDTVKRD
Sbjct: 61  PPQPKPQPTIQKPPSIFPSAPLPPLPPSSGNSAGGNFSAAGFGSPPNTLTEPVWDTVKRD 120

Query: 117 LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 168
           LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK
Sbjct: 121 LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446060|ref|XP_002271751.1| PREDICTED: protein YIPF6 [Vitis vinifera]

 Score =  219 bits (557), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 135/170 (79%), Positives = 143/170 (84%), Gaps = 7/170 (4%)

Query: 5   HSDTIPLHASSQSDIDEIENLINAS----PATVLPARPPSPPRPATIPVSSAPFIQSNIP 60
           HSDTIPLH SSQSDIDEIENLINAS    PATVLPARPPSPPR A+IPVSS PFIQSNIP
Sbjct: 3   HSDTIPLHPSSQSDIDEIENLINASVQSGPATVLPARPPSPPR-ASIPVSSTPFIQSNIP 61

Query: 61  PPP--PTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLS 118
           PP          V    VPPPLP+++ S  +RP+I ++GFGS  NTLTEPVWDTVKRDLS
Sbjct: 62  PPTYNKPPVVPAVVPAAVPPPLPNTSNSSSTRPSIGASGFGSQANTLTEPVWDTVKRDLS 121

Query: 119 RIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 168
           RIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK
Sbjct: 122 RIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 171

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398861|ref|NP_565442.1| Integral membrane Yip1-like protein [Arabidopsis thaliana] gi|4185150|gb|AAD08953.1| expressed protein [Arabidopsis thaliana] gi|20197033|gb|AAM14883.1| expressed protein [Arabidopsis thaliana] gi|87116642|gb|ABD19685.1| At2g18840 [Arabidopsis thaliana] gi|330251718|gb|AEC06812.1| Integral membrane Yip1-like protein [Arabidopsis thaliana]

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/172 (75%), Positives = 141/172 (81%), Gaps = 12/172 (6%)

Query: 5   HSDTIPLHASSQSDIDEIENLINAS----PATVLPARPPSPPRPATIPVSSA----PFIQ 56
             DT+PLH SSQSDIDEIENLIN S    P TVL ARPPSP RP +IPVSS+    PF+Q
Sbjct: 3   QGDTVPLHPSSQSDIDEIENLINESVQSGPGTVLAARPPSPTRP-SIPVSSSSSSSPFMQ 61

Query: 57  SNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRD 116
           SN+PP  P+SS QKV  VPVPPPLP+ + S   +    ++ FGSPPNTLTEPVWDTVKRD
Sbjct: 62  SNLPPLHPSSSAQKVTHVPVPPPLPAVSNSSNFQ---GASAFGSPPNTLTEPVWDTVKRD 118

Query: 117 LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 168
           LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK
Sbjct: 119 LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 170

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110740688|dbj|BAE98446.1| hypothetical protein [Arabidopsis thaliana]

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/172 (75%), Positives = 141/172 (81%), Gaps = 12/172 (6%)

Query: 5   HSDTIPLHASSQSDIDEIENLINAS----PATVLPARPPSPPRPATIPVSSA----PFIQ 56
             DT+PLH SSQSDIDEIENLIN S    P TVL ARPPSP RP +IPVSS+    PF+Q
Sbjct: 3   QGDTVPLHPSSQSDIDEIENLINESVQSGPGTVLAARPPSPTRP-SIPVSSSSSSSPFMQ 61

Query: 57  SNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRD 116
           SN+PP  P+SS QKV  VPVPPPLP+ + S   +    ++ FGSPPNTLTEPVWDTVKRD
Sbjct: 62  SNLPPLHPSSSAQKVTHVPVPPPLPAVSNSSNFQ---GASAFGSPPNTLTEPVWDTVKRD 118

Query: 117 LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 168
           LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK
Sbjct: 119 LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 170

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836756|ref|XP_002886260.1| integral membrane Yip1 family protein [Arabidopsis lyrata subsp. lyrata] gi|297332100|gb|EFH62519.1| integral membrane Yip1 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/168 (75%), Positives = 138/168 (82%), Gaps = 7/168 (4%)

Query: 5   HSDTIPLHASSQSDIDEIENLINAS----PATVLPARPPSPPRPATIPVSSAPFIQSNIP 60
             DT+PLH SSQSDIDEIENLIN S    P TVL ARPPSP RP+    SS+PF+QSN+P
Sbjct: 3   QGDTVPLHPSSQSDIDEIENLINESVQSGPGTVLAARPPSPTRPSIPVSSSSPFMQSNLP 62

Query: 61  PPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRI 120
           P  P+SS QKV  VPVPPPLP+ + S   +    ++ FGSPPNTLTEPVWDTVKRDLSRI
Sbjct: 63  PLHPSSSAQKVTPVPVPPPLPAVSNSSNFQ---GASAFGSPPNTLTEPVWDTVKRDLSRI 119

Query: 121 VSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 168
           VSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK
Sbjct: 120 VSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 167

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553537|gb|AAM62630.1| unknown [Arabidopsis thaliana]

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 128/172 (74%), Positives = 139/172 (80%), Gaps = 12/172 (6%)

Query: 5   HSDTIPLHASSQSDIDEIENLINAS----PATVLPARPPSPPRPATIPVSSA----PFIQ 56
             DT+PLH SSQSDIDEIENLIN S    P TVL ARPPSP RP +IPVSS+    PF+Q
Sbjct: 3   QGDTVPLHPSSQSDIDEIENLINESVQSGPGTVLAARPPSPTRP-SIPVSSSSSSSPFMQ 61

Query: 57  SNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRD 116
           SN+P   P+SS QKV  VPVPPPLP+ + S   +    ++ FGSPPNTLTEPVWDTV RD
Sbjct: 62  SNLPXLHPSSSAQKVTHVPVPPPLPAVSNSSNFQ---GASAFGSPPNTLTEPVWDTVXRD 118

Query: 117 LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 168
           LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK
Sbjct: 119 LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 170

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226491019|ref|NP_001150451.1| LOC100284081 [Zea mays] gi|195639364|gb|ACG39150.1| yip1 domain family member 6 [Zea mays]

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 124/174 (71%), Positives = 139/174 (79%), Gaps = 17/174 (9%)

Query: 1   MSNPHSDTIPLH-ASSQSDIDEIENLINA--SPATVLPARPPSPPRPATIPVSSAPFIQS 57
           MS+ H DTIPLH +S+QSD+DEIE+LI+A  SPATVLPARPPSP R A+IPVSS+P    
Sbjct: 1   MSHNHGDTIPLHPSSAQSDMDEIESLIHAAPSPATVLPARPPSPTR-ASIPVSSSP---- 55

Query: 58  NIPPPPPTSSNQKVPSVPV---PPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVK 114
             P P PT       S+P+   P P+P+S     S P I + GFGSPPNTLTEPVWDT+K
Sbjct: 56  -APAPVPTKPPFPAASIPISVSPVPVPASV----SVP-IGADGFGSPPNTLTEPVWDTIK 109

Query: 115 RDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 168
           RDL+RIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK
Sbjct: 110 RDLARIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 163

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
TAIR|locus:2128926	280	AT4G30260 "AT4G30260" [Arabido	0.788	0.585	0.598	3.7e-48
TAIR|locus:2044455	281	AT2G18840 "AT2G18840" [Arabido	0.764	0.565	0.621	1.6e-47
WB|WBGene00012208	240	W02D9.2 [Caenorhabditis elegan	0.264	0.229	0.517	7.1e-10
DICTYBASE|DDB_G0282825	182	yipf6 "Yip1 domain-containing	0.322	0.368	0.442	2.2e-09
FB|FBgn0031600	224	CG3652 [Drosophila melanogaste	0.355	0.330	0.354	5.2e-08
UNIPROTKB|G4N4V5	317	MGG_06025 "Yip1 domain-contain	0.211	0.138	0.437	9.4e-08
UNIPROTKB|E1BZJ1	234	YIPF6 "Uncharacterized protein	0.298	0.264	0.393	1.9e-06
ZFIN|ZDB-GENE-040625-76	240	yipf6 "Yip1 domain family, mem	0.259	0.225	0.431	1e-05
ASPGD|ASPL0000003463	302	AN5926 [Emericella nidulans (t	0.110	0.076	0.565	2.7e-05
UNIPROTKB|E2R1J1	236	YIPF6 "Uncharacterized protein	0.278	0.245	0.403	0.00017

TAIR|locus:2128926 AT4G30260 "AT4G30260" [Arabidopsis thaliana (taxid:3702)]

 Score = 483 (175.1 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
 Identities = 100/167 (59%), Positives = 112/167 (67%)

Query:     5 HSDTIPLHASSQSDIDEIENLINASXXXXXXXXXXX---XXXXXXXXXXSAPFIQSNIXX 61
             H+DTIPL+ SSQSDIDEIEN++N S                        S+PF+QSN+  
Sbjct:     3 HNDTIPLYQSSQSDIDEIENMMNDSFQSGPGTVLPARPPSPIRPSIPVSSSPFVQSNLPP 62

Query:    62 XXXTSSNQKXXXXXXXXXXXXXTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRIV 121
                +SS+               +       +I  +GFGSPPNTLTEPVWDTVKRDLSRIV
Sbjct:    63 LPPSSSSSTQKVMPVPAPPPLPSAGNEGNKSIGGSGFGSPPNTLTEPVWDTVKRDLSRIV 122

Query:   122 SNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 168
             SNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK
Sbjct:   123 SNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 169

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2044455 AT2G18840 "AT2G18840" [Arabidopsis thaliana (taxid:3702)]

 Score = 476 (172.6 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
 Identities = 105/169 (62%), Positives = 111/169 (65%)

Query:     7 DTIPLHASSQSDIDEIENLINASXXXXXXXXXXXX-------XXXXXXXXXSAPFIQSNI 59
             DT+PLH SSQSDIDEIENLIN S                            S+PF+QSN+
Sbjct:     5 DTVPLHPSSQSDIDEIENLINESVQSGPGTVLAARPPSPTRPSIPVSSSSSSSPFMQSNL 64

Query:    60 XXXXXTSSNQKXXXXXXXXXXXXXTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSR 119
                  +SS QK              +S  S    AS  FGSPPNTLTEPVWDTVKRDLSR
Sbjct:    65 PPLHPSSSAQKVTHVPVPPPLPA--VSNSSNFQGASA-FGSPPNTLTEPVWDTVKRDLSR 121

Query:   120 IVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 168
             IVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK
Sbjct:   122 IVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 170

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

WB|WBGene00012208 W02D9.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 143 (55.4 bits), Expect = 7.1e-10, P = 7.1e-10
 Identities = 30/58 (51%), Positives = 36/58 (62%)

Query:   103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTL 160
             +TL EPVWDTVKRD+  + +    VV P+    D  + LRDWDLWGP F  V L L L
Sbjct:    64 DTLEEPVWDTVKRDVLTVGAKFTHVVLPHG---DKQQLLRDWDLWGPLFICVGLALLL 118

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

DICTYBASE|DDB_G0282825 yipf6 "Yip1 domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 31/70 (44%), Positives = 39/70 (55%)

Query:   102 PNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLS 161
             PNTL EPV  T+ RDL  I   L  V+ P   R +    LRDWDLWGP    + + + LS
Sbjct:     7 PNTLDEPVIQTILRDLKMIGFKLYHVILP---RGNAANVLRDWDLWGPLILCLVMAIFLS 63

Query:   162 WSASVKKFLK 171
              SA  +K L+
Sbjct:    64 ISAEEQKALE 73

GO:0016020 "membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0031600 CG3652 [Drosophila melanogaster (taxid:7227)]

 Score = 126 (49.4 bits), Expect = 5.2e-08, P = 5.2e-08
 Identities = 28/79 (35%), Positives = 41/79 (51%)

Query:    88 GSRPNIASTGFGSPP-NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDL 146
             G R   A++  G P  NTL EP+ +TV RD+  +      V++P    ++    LRDWDL
Sbjct:    25 GKRTTTATSASGVPEYNTLDEPIRETVLRDIRAVGIKFYHVLYP----KEKSSLLRDWDL 80

Query:   147 WGPFFFIVFLGLTLSWSAS 165
             WGP     F+   L  S++
Sbjct:    81 WGPLVLCTFMATILQGSST 99

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|G4N4V5 MGG_06025 "Yip1 domain-containing protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 96 (38.9 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
 Identities = 21/48 (43%), Positives = 27/48 (56%)

Query:   137 PGKALRDWDLWGPFFFIVFLGLTLSWSASVKKFLKQSYGMKQSCMIWL 184
             PG  LRDWDLWGP  F + L L LS++AS  +  K         M+W+
Sbjct:   173 PG--LRDWDLWGPLIFCLLLSLLLSFNASASQ--KDLVFSGVFAMVWI 216

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0012505 "endomembrane system" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=ISS

UNIPROTKB|E1BZJ1 YIPF6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 113 (44.8 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 26/66 (39%), Positives = 34/66 (51%)

Query:   103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 162
             +TL EPV DT+ RDL  +      V++P    +     LRDWDLWGP    V L L L  
Sbjct:    50 STLDEPVRDTILRDLKAVGKKFVHVMYP----KKSSALLRDWDLWGPLVLCVSLALMLQG 105

Query:   163 SASVKK 168
              ++  K
Sbjct:   106 GSADSK 111

GO:0016020 "membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

ZFIN|ZDB-GENE-040625-76 yipf6 "Yip1 domain family, member 6" [Danio rerio (taxid:7955)]

 Score = 111 (44.1 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 25/58 (43%), Positives = 31/58 (53%)

Query:   103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTL 160
             +TL EPV DT+ RDL  +      V++P    +     LRDWDLWGP    V L L L
Sbjct:    55 STLDEPVKDTILRDLRAVGQKFVHVMYP----KKSSALLRDWDLWGPLLLCVTLALML 108

GO:0016020 "membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

ASPGD|ASPL0000003463 AN5926 [Emericella nidulans (taxid:162425)]

 Score = 79 (32.9 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query:   139 KALRDWDLWGPFFFIVFLGLTLS 161
             + LRDWDLWGP  F + L + LS
Sbjct:   162 EGLRDWDLWGPLIFCLLLSMFLS 184

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|E2R1J1 YIPF6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 105 (42.0 bits), Expect = 0.00017, P = 0.00017
 Identities = 25/62 (40%), Positives = 33/62 (53%)

Query:   103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 162
             +TL E V +T+ RDL  +      V++P   R+     LRDWDLWGP    V L L L  
Sbjct:    52 STLNESVQNTIMRDLKAVGKKFMHVLYP---RKS-NTLLRDWDLWGPLILCVTLALMLQR 107

Query:   163 SA 164
             S+
Sbjct:   108 SS 109

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	208
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.003
COG5080	227	COG5080, YIP1, Rab GTPase interacting factor, Golg	0.003
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.003

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 20/62 (32%), Positives = 25/62 (40%)

Query: 28   ASPATVLPARPPSPPRPATIPVSSAPFIQSNIPPPPPTSSNQKVPSVPVPPPLPSSTISG 87
            +  +   P  P  PP     P ++ P   S   P PP +S Q     P P P P S   G
Sbjct: 2794 SRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLG 2853

Query: 88   GS 89
            GS
Sbjct: 2854 GS 2855

Length = 3151

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 5/95 (5%)

Query: 2   SNPHSDTIPLHASSQSDIDEIENLINASPATVLPARPPSPPRPATIPVSSAPFIQSNIPP 61
           S     ++PL  S+ +D          +PA  +   P +   PA     +          
Sbjct: 155 SQNSGQSVPLDTSTTTDPATTP-----APAAPVDTTPTNSQTPAVATAPAPAVDPQQNAV 209

Query: 62  PPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIAST 96
             P+ +N    + P P    +   +     + A  
Sbjct: 210 VAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGV 244

Length = 331

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 27   NASPATVLPARPPSP--PRPATIPVSSAPFIQSNIPPPPPTSSNQKVPSVPVPPPLPSST 84
             + P+   PA PP+      A +P +++P      P PPPTS+    P  P  PP PS  
Sbjct: 2796 ESLPSPWDPADPPAAVLAPAAALPPAASP----AGPLPPPTSAQPTAPPPPPGPPPPSLP 2851

Query: 85   ISGGSRP 91
            + G   P
Sbjct: 2852 LGGSVAP 2858

Length = 3151

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 28  ASPATVLPARPPS--PPRPATIPVSSAPFIQSNIPPPPPTSSNQKVPSVPVPPPLPSST 84
           A+P+ V P   PS  P   A   +     ++    PPP        P    P   P  T
Sbjct: 374 AAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLT 432

Length = 585

>gnl|CDD|227412 COG5080, YIP1, Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 26/96 (27%), Positives = 31/96 (32%), Gaps = 14/96 (14%)

Query: 79  PLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPN------- 131
           P      SGGS         G  P  L E +  T  R +      L   +  N       
Sbjct: 17  PDAPFAASGGSADFEGDQNLGPDP-LLDETLLATSTRGVYPGDPPLLEELGINFGHIKSK 75

Query: 132 ------PYREDPGKALRDWDLWGPFFFIVFLGLTLS 161
                 P+       L D DLWGP  FI+   L LS
Sbjct: 76  SDDVLGPFDNKAFDILADCDLWGPLIFILLYSLFLS 111

Length = 227

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 26/108 (24%), Positives = 38/108 (35%), Gaps = 16/108 (14%)

Query: 20  DEIENLINASPATVLPARPPSPPRPATIPVSSAPFI-QSNIPPPPPTSSNQKVPSVPVPP 78
               + I  + A   P   P+P  P      SAP   Q+   P PP +       VP  P
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEP 421

Query: 79  PLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKL 126
             PS T    +           PP+   E +W        +I++ L+L
Sbjct: 422 TEPSPTPPANAANA--------PPSLNLEELWQ-------QILAKLEL 454

Length = 620

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	208
KOG2946	234	consensus Uncharacterized conserved protein [Funct	99.98
COG5080	227	YIP1 Rab GTPase interacting factor, Golgi membrane	99.53
KOG3103	249	consensus Rab GTPase interacting factor, Golgi mem	99.49
KOG3114	290	consensus Uncharacterized conserved protein [Funct	93.91

>KOG2946 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.98  E-value=1.3e-32  Score=239.28  Aligned_cols=140  Identities=43%  Similarity=0.648  Sum_probs=111.3

Q ss_pred             cCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhHHHH
Q 028505           33 VLPARPPSPPRPATIPVSSAPFIQSNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDT  112 (208)
Q Consensus        33 v~~~~p~sppr~~sipv~s~p~~~~~~p~~pp~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~TLDEPV~eT  112 (208)
                      +.++|+++++| .+++++|    +.+..+-.+.   ... .++.++|-..+++++.     +..++.+++||||||||||
T Consensus         1 ~~~~~~~s~~~-~s~~~~s----~t~~ep~~~s---~~~-~~~~~~p~~~a~n~g~-----g~~~~~~e~dTldePv~~t   66 (234)
T KOG2946|consen    1 VLDPRPHSPER-PSIEMES----QTMLEPVFAS---PSV-EAPASAPGNSAGNSGF-----GWLLEVNEEDTLDEPVLET   66 (234)
T ss_pred             CCCCCCCCCCC-CCcCccC----cccCCccccC---ccc-cCCCCCCcccccccCc-----ccccccCCCCcccchHHHH
Confidence            46789999999 9999987    2233322211   111 1234444445544332     4566788999999999999


Q ss_pred             HHHHHHHHHHhcceeeccCCCCCCCCCcccCcchhHHHHHHHHHHHHhhccccccccceeEecccceeeeehhhhhh
Q 028505          113 VKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKFLKQSYGMKQSCMIWLFPLRL  189 (208)
Q Consensus       113 LkRDL~~I~~KLk~VL~P~~~r~d~~k~LRDWDLWGPLiFcL~LAl~LS~sA~~~qs~~~FsGv~~F~~iW~~~~~~  189 (208)
                      +|||+++|++|+|+||||+++++|+++.+|||||||||+||+++|++|++++..++. .+|+-+  |+..|++.++.
T Consensus        67 lkrD~~~I~~kl~~Vl~P~py~~dk~~~lRDwDlWGPl~~~~~la~iL~~s~~~~~~-~vFs~v--f~i~wfG~~vv  140 (234)
T KOG2946|consen   67 LKRDLRAIGSKLKHVLYPHPYFEDKGQLLRDWDLWGPLFFCVFLALILSLSGSVKSA-SVFAVV--FAILWFGAVVV  140 (234)
T ss_pred             HHHHHHHHHhceEEEEccCCCcccccceeecccccchhHHHHHHHHHHHhhcCcccc-hhHHHH--HHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999987766 788887  99999998875

>COG5080 YIP1 Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]

Probab=99.53  E-value=2.2e-15  Score=131.40  Aligned_cols=80  Identities=24%  Similarity=0.284  Sum_probs=68.5

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHhcceeeccCCCCCCCCCcccCcchhHHHHHHHHHHHHhhccccccccceeEeccccee
Q 028505          101 PPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKFLKQSYGMKQSC  180 (208)
Q Consensus       101 ~~~TLDEPV~eTLkRDL~~I~~KLk~VL~P~~~r~d~~k~LRDWDLWGPLiFcL~LAl~LS~sA~~~qs~~~FsGv~~F~  180 (208)
                      ++...|||++||+..|+.+|.+|+++|+.|...  ...++++||||||||+||+++++.|+++.+     ++|.-+  |+
T Consensus        53 g~~p~d~pLleel~i~F~~i~~ks~~vl~p~~~--~~~~i~~d~DL~gPliF~lL~sLfLsla~~-----shFgyi--y~  123 (227)
T COG5080          53 GVYPGDPPLLEELGINFGHIKSKSDDVLGPFDN--KAFDILADCDLWGPLIFILLYSLFLSLAGK-----SHFGYI--YG  123 (227)
T ss_pred             CCCCCCccHHHHhcccccccccccceeeecccc--cchhhhhcccccccHHHHHHHHHHHHhccc-----ceeehh--hH
Confidence            457789999999999999999999999999743  336899999999999999999999999987     445555  66


Q ss_pred             eeehhhhhh
Q 028505          181 MIWLFPLRL  189 (208)
Q Consensus       181 ~iW~~~~~~  189 (208)
                      ..|++.+++
T Consensus       124 islfg~lsl  132 (227)
T COG5080         124 ISLFGTLSL  132 (227)
T ss_pred             HHHHHHHHH
Confidence            689988765

>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.49  E-value=2.4e-14  Score=126.33  Aligned_cols=78  Identities=22%  Similarity=0.380  Sum_probs=67.4

Q ss_pred             ChhHHHHHHHHHHHHHHhcceeeccCCCCCCCCCcccCcchhHHHHHHHHHHHHhhccccccccceeEecccceeeeehh
Q 028505          106 TEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKFLKQSYGMKQSCMIWLF  185 (208)
Q Consensus       106 DEPV~eTLkRDL~~I~~KLk~VL~P~~~r~d~~k~LRDWDLWGPLiFcL~LAl~LS~sA~~~qs~~~FsGv~~F~~iW~~  185 (208)
                      ++|++|||.+|+.+|++|++.||.|.  |..+..+++|-||||||+|||++++.|..+++.+.++  +||++.|.++.++
T Consensus        81 EpPLLEELgInf~hI~~KT~~VLnP~--r~~~q~i~~d~DlaGPlvf~L~f~~flLl~gKi~Fgy--Iygi~~~gsl~iy  156 (249)
T KOG3103|consen   81 EPPLLEELGINFDHIKQKTRAVLNPF--RSADQSIMKDTDLAGPLVFCLLFGLFLLLAGKIHFGY--IYGISLLGSLSIY  156 (249)
T ss_pred             CCchHHHhCCCHHHHHHHHhheeccc--ccCceEEecCcccccchHHHHHHHHHHHhcCceEEEE--EeeeHHHHHHHHH
Confidence            55699999999999999999999997  4455788999999999999999999999999887776  7887778777665


Q ss_pred             hh
Q 028505          186 PL  187 (208)
Q Consensus       186 ~~  187 (208)
                      .+
T Consensus       157 ~L  158 (249)
T KOG3103|consen  157 FL  158 (249)
T ss_pred             HH
Confidence            43

>KOG3114 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.91  E-value=0.043  Score=50.38  Aligned_cols=50  Identities=26%  Similarity=0.446  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHhcceeeccCCCCCCCCCcccCcchhHHHHHHHHHHHHhhccc
Q 028505          113 VKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSA  164 (208)
Q Consensus       113 LkRDL~~I~~KLk~VL~P~~~r~d~~k~LRDWDLWGPLiFcL~LAl~LS~sA  164 (208)
                      +.-|..++.+|++.+++|++.-.  .+.=.+-|||||+-+|.++-..|.++.
T Consensus        84 FdVDt~qV~~Rl~~SliP~~~~~--~~~~~~PDLYGPfWI~~TlVf~l~~~g  133 (290)
T KOG3114|consen   84 FDVDTAQVRKRLKESLIPRNYVR--DQIQDNPDLYGPFWITATLVFALAISG  133 (290)
T ss_pred             cCCCHHHHHHHHHHhcCCccccc--cccCCCccccccHHHHHHHHHHHHHcc
Confidence            45688999999999999943211  122235999999999999988876543

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00