Citrus Sinensis ID: 028524

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MATSFQLANTFHVKGWSPPMPIKQSFGISERLRSSSRRNPRKGHQVSIFSTCCFLEEADLLDIKLAPSTAAFSGISHDSVNIVKNIKLYVADTSDITSNFVHMLPFADLDPATAKLAIGIIGPFLSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVGLLNFLNEILVGPQGLLVLVSQQIN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHcccccccccccccccccccEEEEcccccccccccccEEEEEEcEHHHHHHHHcccEEccccccEcccccccHcHccccEEEEcccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHEEccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MATSFQLANTfhvkgwsppmpikqsfgiserlrsssrrnprkghqvSIFSTCcfleeadlldiklapstaafsgishdsVNIVKNIKLYvadtsditsnfvhmlpfadldpaTAKLAIGIIGPFLSAFSFLFILRIVMswypkiplakfpyvlayaptepfllqtrklipplagvditpVVWVGLLNFLNEILVGPQGLLVLVSQQIN
Flexible Loop (DISEMBL)
MATSFQLANtfhvkgwsppmpiKQSFGISERLrsssrrnprkghqVSIFSTCCFLEEADLLDIKLAPSTAAfsgishdsvnIVKNIKLYVADTSDITSNFVHMLPFADLDPATAKLAIGIIGPFLSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVGLLNFLNEILVGPQGLLVLVSQQIN
Low Complexity Region (SEG)
MATSFQLANTFHVKGWSPPMPIKQSFGISERLRSSSRRNPRKGHQVSIFSTCCFLEEADLLDIKLAPSTAAFSGISHDSVNIVKNIKLYVADTSDITSNFVHMLPFADLDPATAKLAIGIIGPFLSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVGLLNFLNEILVGPQGLLVLVSQQIN
Disordered region (IsUnstruct)
*********TFHVK******************************QVSIFSTCCFLEEADLLDIKLAPSTAAFSGISHDSVNIVKNIKLYVADTSDITSNFVHMLPFADLDPATAKLAIGIIGPFLSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVGLLNFLNEILVGPQGLLVLV*****
Disordered Region (DISOPRED)
********NTFHVKGWSP*******************************STCCFLEEADLLDIK************HDSVNIVKNIKLYVADTSDITSNFVHMLPFADLDPATAKLAIGIIGPFLSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVGLLNFLNEILVGPQGLLVLVSQQI*
Disordered Region (DISEMBL)
MATSFQLANTFHVKGWSPPMPIKQSFGIS***************QVSIFSTCCFLEEADLLDIKLAPSTAAFSGISHDSVNIVKNIKLYVADTSDITSNFVHMLPFADLDPATAKLAIGIIGPFLSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVGLLNFLNEILVGPQGLLVLVSQQIN
Disordered Region (DISPRO)
**TSFQLANTFHVKGWSPPMPIKQSFGISERLRSSSRRNPRKGHQVSIFSTCCFLEEADLLDIKLAPSTAAFSGISHDSVNIVKNIKLYVADTSDITSNFVHMLPFADLDPATAKLAIGIIGPFLSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVGLLNFLNEILVGPQGLLVLVSQQIN
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATSFQLANTFHVKGWSPPMPIKQSFGISERLRSSSRRNPRKGHQVSIFSTCCFLEEADLLDIKLAPSTAAFSGISHDSVNIVKNIKLYVADTSDITSNFVHMLPFADLDPATAKLAIGIIGPFLSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVGLLNFLNEILVGPQGLLVLVSQQIN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
224085266	208	predicted protein [Populus trichocarpa]	0.956	0.956	0.605	8e-61
255582382	203	conserved hypothetical protein [Ricinus	0.975	1.0	0.562	9e-57
356535725	218	PREDICTED: uncharacterized protein LOC10	0.951	0.908	0.523	2e-48
147771845	207	hypothetical protein VITISV_035761 [Viti	0.764	0.768	0.580	6e-47
225425059	207	PREDICTED: uncharacterized protein LOC10	0.764	0.768	0.580	6e-47
351724615	218	uncharacterized protein LOC100500538 [Gl	0.899	0.857	0.529	2e-46
224062816	104	predicted protein [Populus trichocarpa]	0.495	0.990	0.844	4e-43
297805168	176	hypothetical protein ARALYDRAFT_493654 [	0.639	0.755	0.666	4e-43
22327397	174	cofactor assembly, complex C (B6F) [Arab	0.524	0.626	0.788	6e-43
449498524	191	PREDICTED: uncharacterized LOC101206020	0.600	0.654	0.672	8e-43

>gi|224085266|ref|XP_002307528.1| predicted protein [Populus trichocarpa] gi|222856977|gb|EEE94524.1| predicted protein [Populus trichocarpa]

 Score =  238 bits (608), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 121/200 (60%), Positives = 144/200 (72%), Gaps = 1/200 (0%)

Query: 9   NTFHVKGWSPPMPIKQSFGISERLRSSSRRNPRKGHQVSIFSTCCFLEEADLLDIKLAPS 68
           N  H++ W+P +  K  F +SERL   +R +  +GHQV    TCCF   A  L++ LA S
Sbjct: 10  NQNHIR-WAPLIHKKAKFNVSERLNCPTRGHSSQGHQVLSSRTCCFTRVAASLNVDLAMS 68

Query: 69  TAAFSGISHDSVNIVKNIKLYVADTSDITSNFVHMLPFADLDPATAKLAIGIIGPFLSAF 128
               SG       +V NI + +  TSD TSN +  L  ADLDPA AK A+GI+GPFLSAF
Sbjct: 69  HGDISGEPFSIPEVVGNINVGIPKTSDATSNLIQRLMLADLDPAAAKSAVGILGPFLSAF 128

Query: 129 SFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVGLLNF 188
           SFLFILRIVMSWYPK+P+ KFPYVL YAPTEP L+ TRKLIPPL GVD+TPVVW GLL+F
Sbjct: 129 SFLFILRIVMSWYPKLPVGKFPYVLVYAPTEPLLIPTRKLIPPLGGVDVTPVVWFGLLSF 188

Query: 189 LNEILVGPQGLLVLVSQQIN 208
           LNEILVGPQGLLVL+SQQI+
Sbjct: 189 LNEILVGPQGLLVLLSQQIS 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582382|ref|XP_002531980.1| conserved hypothetical protein [Ricinus communis] gi|223528377|gb|EEF30416.1| conserved hypothetical protein [Ricinus communis]

 Score =  225 bits (573), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 117/208 (56%), Positives = 143/208 (68%), Gaps = 5/208 (2%)

Query: 1   MATSFQLANTFHVKGWSPPMPIKQSFGISERLRSSSRRNPRKGHQVSIFSTCCFLEEADL 60
           MAT   L +   +KGW P +  KQ F  SE+     RRNP   + V   S  C       
Sbjct: 1   MATCASLFSNTQIKGWRPLVHKKQKFNFSEQFNCLIRRNPSDDYHVLQSSIRC-----SA 55

Query: 61  LDIKLAPSTAAFSGISHDSVNIVKNIKLYVADTSDITSNFVHMLPFADLDPATAKLAIGI 120
           ++ +L P+ A  S    +S   V+NI L V  TS+ TS F+     ADLDPATAKLAIG 
Sbjct: 56  VNTELLPTYATISERPLNSFEDVQNINLNVVKTSEATSKFIQSSVVADLDPATAKLAIGF 115

Query: 121 IGPFLSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAGVDITPV 180
           +GPFLSAF FLFILRIVMSWYPK+P+ KFPYV+AYAPTEP L+ TRK+IPP+ GVD+TPV
Sbjct: 116 LGPFLSAFGFLFILRIVMSWYPKLPVGKFPYVIAYAPTEPILVPTRKVIPPVGGVDVTPV 175

Query: 181 VWVGLLNFLNEILVGPQGLLVLVSQQIN 208
           VW GL++FLNEIL+GPQGLLVL+SQQ+N
Sbjct: 176 VWFGLISFLNEILLGPQGLLVLLSQQVN 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535725|ref|XP_003536394.1| PREDICTED: uncharacterized protein LOC100793885 [Glycine max]

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 110/210 (52%), Positives = 140/210 (66%), Gaps = 12/210 (5%)

Query: 9   NTFHVKG-----WSPPM---PIKQSFGISERLRSSSRRNPRKGHQVSIFSTC-CFLEEAD 59
           NTFHV          P+   P    FG+ +  +  ++RN      V     C C+ E   
Sbjct: 11  NTFHVHAGIRGRQCKPLIFKPTNFGFGVWKSSKYHTKRNVNDNSGV--MQCCSCYTEVGA 68

Query: 60  LLDIKLAP-STAAFSGISHDSVNIVKNIKLYVADTSDITSNFVHMLPFADLDPATAKLAI 118
              I ++    AA + IS +S   +  +KL + +TS  +S+F+  L  ADLDPATAKLAI
Sbjct: 69  SAGITISSLVDAATTQISLNSDVDLNTLKLSMPETSHASSDFMTRLVLADLDPATAKLAI 128

Query: 119 GIIGPFLSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAGVDIT 178
           G +GPFLS F FLFI+RIVMSWYPK+P+ KFPYV+AYAPTEP L+ TRK+I PLAGVD+T
Sbjct: 129 GFLGPFLSVFGFLFIVRIVMSWYPKLPVGKFPYVIAYAPTEPLLIPTRKVIAPLAGVDVT 188

Query: 179 PVVWVGLLNFLNEILVGPQGLLVLVSQQIN 208
           PVVW GL++FLNEILVGPQGLLVL+SQQ+N
Sbjct: 189 PVVWFGLISFLNEILVGPQGLLVLLSQQVN 218

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771845|emb|CAN71336.1| hypothetical protein VITISV_035761 [Vitis vinifera]

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 105/181 (58%), Positives = 128/181 (70%), Gaps = 22/181 (12%)

Query: 30  ERLRSSSRRNPRKGHQVSI-FSTCCFLEEADLLDIKLAPSTAAFSGISHDSVNIVKNIKL 88
           E L+ S+RR+   G   +  FSTC FL       I + PST    G++    NI ++   
Sbjct: 46  ESLKYSNRRSRAWGSGTATKFSTCYFL------GINVTPST----GLTPPHANIAED--- 92

Query: 89  YVADTSDITSNFVHMLPFADL--DPATAKLAIGIIGPFLSAFSFLFILRIVMSWYPKIPL 146
                    S F+H L  A+L  DPATAKLAIG +GPFLSAF+FLF++RIVMSWYPK+P+
Sbjct: 93  ------AYGSGFMHSLDLAELELDPATAKLAIGFLGPFLSAFAFLFVIRIVMSWYPKLPV 146

Query: 147 AKFPYVLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVGLLNFLNEILVGPQGLLVLVSQQ 206
            KFPYV+AYAPTEP L+ TRKLIPPL GVD+TPVVW GLL+FLNEILVGPQGLLVL+SQQ
Sbjct: 147 GKFPYVIAYAPTEPLLVPTRKLIPPLGGVDVTPVVWFGLLSFLNEILVGPQGLLVLISQQ 206

Query: 207 I 207
           +
Sbjct: 207 V 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425059|ref|XP_002271513.1| PREDICTED: uncharacterized protein LOC100244373 [Vitis vinifera] gi|297738243|emb|CBI27444.3| unnamed protein product [Vitis vinifera]

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 105/181 (58%), Positives = 128/181 (70%), Gaps = 22/181 (12%)

Query: 30  ERLRSSSRRNPRKGHQVSI-FSTCCFLEEADLLDIKLAPSTAAFSGISHDSVNIVKNIKL 88
           E L+ S+RR+   G   +  FSTC FL       I + PST    G++    NI ++   
Sbjct: 46  ESLKYSNRRSRAWGSGTATKFSTCYFL------GINVTPST----GLTPPHANIAED--- 92

Query: 89  YVADTSDITSNFVHMLPFADL--DPATAKLAIGIIGPFLSAFSFLFILRIVMSWYPKIPL 146
                    S F+H L  A+L  DPATAKLAIG +GPFLSAF+FLF++RIVMSWYPK+P+
Sbjct: 93  ------AYGSGFMHSLDLAELELDPATAKLAIGFLGPFLSAFAFLFVIRIVMSWYPKLPV 146

Query: 147 AKFPYVLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVGLLNFLNEILVGPQGLLVLVSQQ 206
            KFPYV+AYAPTEP L+ TRKLIPPL GVD+TPVVW GLL+FLNEILVGPQGLLVL+SQQ
Sbjct: 147 GKFPYVIAYAPTEPLLVPTRKLIPPLGGVDVTPVVWFGLLSFLNEILVGPQGLLVLISQQ 206

Query: 207 I 207
           +
Sbjct: 207 V 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724615|ref|NP_001235784.1| uncharacterized protein LOC100500538 [Glycine max] gi|255630585|gb|ACU15652.1| unknown [Glycine max]

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 100/189 (52%), Positives = 132/189 (69%), Gaps = 2/189 (1%)

Query: 21  PIKQSFGISERLRSSSRRNPRKGHQVSIFSTCCFLEEADLLDIKLAP-STAAFSGISHDS 79
           P    F + +  +  ++RN   G+   +    C+ E      I ++    AA + IS +S
Sbjct: 31  PSNFGFRVWKSSKYHTKRN-VNGNSGVMQCCSCYTEVGASAGITISSLVNAATTHISLNS 89

Query: 80  VNIVKNIKLYVADTSDITSNFVHMLPFADLDPATAKLAIGIIGPFLSAFSFLFILRIVMS 139
              +  +KL + +TS  +++ +  L  ADLDP TAKLAIG +GPFLS F FLFILRIVMS
Sbjct: 90  DVDLNTLKLSIQETSPASTDLMTRLVLADLDPDTAKLAIGFLGPFLSVFGFLFILRIVMS 149

Query: 140 WYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVGLLNFLNEILVGPQGL 199
           WYPK+P+ KFPYV+AYAPTEP L+ TRK+IPPLAG+D+TPVVW GL++FLNEILVGPQGL
Sbjct: 150 WYPKLPVGKFPYVIAYAPTEPLLIPTRKVIPPLAGMDVTPVVWFGLISFLNEILVGPQGL 209

Query: 200 LVLVSQQIN 208
           LVL+SQQ+N
Sbjct: 210 LVLLSQQVN 218

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062816|ref|XP_002300893.1| predicted protein [Populus trichocarpa] gi|222842619|gb|EEE80166.1| predicted protein [Populus trichocarpa]

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 87/103 (84%), Positives = 96/103 (93%)

Query: 106 FADLDPATAKLAIGIIGPFLSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQT 165
            ADLDPATAKLAIGI+GPFLSAFSFLF+LRIVMSWYPK+P+ KFPYV+AYAPTEP L+ T
Sbjct: 2   LADLDPATAKLAIGILGPFLSAFSFLFVLRIVMSWYPKLPVGKFPYVIAYAPTEPLLIPT 61

Query: 166 RKLIPPLAGVDITPVVWVGLLNFLNEILVGPQGLLVLVSQQIN 208
           RKLIPPL GVD+TPVVW GL +FLNEILVGPQGLLVL+SQQIN
Sbjct: 62  RKLIPPLGGVDVTPVVWFGLSSFLNEILVGPQGLLVLLSQQIN 104

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805168|ref|XP_002870468.1| hypothetical protein ARALYDRAFT_493654 [Arabidopsis lyrata subsp. lyrata] gi|297316304|gb|EFH46727.1| hypothetical protein ARALYDRAFT_493654 [Arabidopsis lyrata subsp. lyrata]

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 90/135 (66%), Positives = 110/135 (81%), Gaps = 2/135 (1%)

Query: 73  SGISH-DSVNIVKNIKLYVADTSDITSNFVHMLPFADLDPATAKLAIGIIGPFLSAFSFL 131
           + +SH +  +   N+   +  T+ I S+ +  +  ADLDP TAKLAIGI+GP LSAF FL
Sbjct: 40  ASLSHIEEADTTTNLYPNIRQTNSI-SDSLRNISLADLDPGTAKLAIGILGPALSAFGFL 98

Query: 132 FILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVGLLNFLNE 191
           FI+RIVMSWYPK+P+ KFPYVLAYAPTEP L+QTRK+IPPLAGVD+TPVVW GL++FL+E
Sbjct: 99  FIVRIVMSWYPKLPVDKFPYVLAYAPTEPILVQTRKVIPPLAGVDVTPVVWFGLVSFLSE 158

Query: 192 ILVGPQGLLVLVSQQ 206
           ILVGPQGLLVLVSQQ
Sbjct: 159 ILVGPQGLLVLVSQQ 173

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22327397|ref|NP_198461.2| cofactor assembly, complex C (B6F) [Arabidopsis thaliana] gi|20260188|gb|AAM12992.1| putative protein [Arabidopsis thaliana] gi|21387037|gb|AAM47922.1| putative protein [Arabidopsis thaliana] gi|62320216|dbj|BAD94460.1| hypothetical protein [Arabidopsis thaliana] gi|332006663|gb|AED94046.1| cofactor assembly, complex C (B6F) [Arabidopsis thaliana]

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 86/109 (78%), Positives = 97/109 (88%)

Query: 98  SNFVHMLPFADLDPATAKLAIGIIGPFLSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAP 157
           S  +  +  ADLDP TAKLAIGI+GP LSAF FLFILRIVMSWYPK+P+ KFPYVLAYAP
Sbjct: 63  SESLRNISLADLDPGTAKLAIGILGPALSAFGFLFILRIVMSWYPKLPVDKFPYVLAYAP 122

Query: 158 TEPFLLQTRKLIPPLAGVDITPVVWVGLLNFLNEILVGPQGLLVLVSQQ 206
           TEP L+QTRK+IPPLAGVD+TPVVW GL++FL+EILVGPQGLLVLVSQQ
Sbjct: 123 TEPILVQTRKVIPPLAGVDVTPVVWFGLVSFLSEILVGPQGLLVLVSQQ 171

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449498524|ref|XP_004160561.1| PREDICTED: uncharacterized LOC101206020 isoform 2 [Cucumis sativus]

 Score =  179 bits (453), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 84/125 (67%), Positives = 102/125 (81%)

Query: 84  KNIKLYVADTSDITSNFVHMLPFADLDPATAKLAIGIIGPFLSAFSFLFILRIVMSWYPK 143
           + I   + D S   S+FV+ +  ADLDP TAKLAI  +GP LS FSFLFI RIVMSWYPK
Sbjct: 67  RTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPK 126

Query: 144 IPLAKFPYVLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVGLLNFLNEILVGPQGLLVLV 203
           +P+ KFPYV+AYAPTEP L+ TRK+IPPL GVD+TPVVW GL++FLNEIL+GPQGLLVL+
Sbjct: 127 LPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVTPVVWFGLISFLNEILLGPQGLLVLL 186

Query: 204 SQQIN 208
           SQQ++
Sbjct: 187 SQQVS 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
TAIR|locus:2158906	174	CCB3 "AT5G36120" [Arabidopsis	0.557	0.666	0.743	5.7e-43
UNIPROTKB|Q83A22	193	CBU_2089 "Integral membrane pr	0.370	0.398	0.329	2.2e-06
TIGR_CMR|CBU_2089	193	CBU_2089 "conserved hypothetic	0.370	0.398	0.329	2.2e-06
UNIPROTKB|Q74EU3	104	GSU0866 "Uncharacterized prote	0.360	0.721	0.277	1.8e-05
TIGR_CMR|GSU_0866	104	GSU_0866 "YGGT family protein"	0.360	0.721	0.277	1.8e-05
UNIPROTKB|Q81WE1	87	BAS3749 "YlmG protein" [Bacill	0.331	0.793	0.342	4e-05
TIGR_CMR|BA_4037	87	BA_4037 "ylmG protein" [Bacill	0.331	0.793	0.342	4e-05
TAIR|locus:2079656	232	YLMG1-1 "AT3G07430" [Arabidops	0.413	0.370	0.303	5.7e-05
TAIR|locus:2132907	218	YLMG1-2 "AT4G27990" [Arabidops	0.567	0.541	0.25	0.00026
TAIR|locus:504956451	251	YLMG2 "AT5G21920" [Arabidopsis	0.432	0.358	0.31	0.00029

TAIR|locus:2158906 CCB3 "AT5G36120" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 87/117 (74%), Positives = 102/117 (87%)

Query:    90 VADTSDITSNFVHMLPFADLDPATAKLAIGIIGPFLSAFSFLFILRIVMSWYPKIPLAKF 149
             +  T+ I+ + +  +  ADLDP TAKLAIGI+GP LSAF FLFILRIVMSWYPK+P+ KF
Sbjct:    56 IRQTNSISES-LRNISLADLDPGTAKLAIGILGPALSAFGFLFILRIVMSWYPKLPVDKF 114

Query:   150 PYVLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVGLLNFLNEILVGPQGLLVLVSQQ 206
             PYVLAYAPTEP L+QTRK+IPPLAGVD+TPVVW GL++FL+EILVGPQGLLVLVSQQ
Sbjct:   115 PYVLAYAPTEPILVQTRKVIPPLAGVDVTPVVWFGLVSFLSEILVGPQGLLVLVSQQ 171

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0010190 "cytochrome b6f complex assembly" evidence=IMP

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|Q83A22 CBU_2089 "Integral membrane protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 123 (48.4 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 28/85 (32%), Positives = 50/85 (58%)

Query:   116 LAIGIIG-PFLSAFSFLFILRIVMSWYPKI---PLAKFPYVLAYAPTEPFLLQTRKLIPP 171
             + I  +G  FL+ + +  ILR+VMSW   +   P+A+  +++    TEP +   R+LIP 
Sbjct:   102 IVIATLGNKFLNLYFYAIILRVVMSWIASLQHNPIAEIIFLI----TEPLMRPIRRLIPS 157

Query:   172 LAGVDITPVVWVGLLNFLNEILVGP 196
             +AG D +P+V + LL  ++ ++  P
Sbjct:   158 IAGFDFSPIVLLILLQLISILVFRP 182

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_2089 CBU_2089 "conserved hypothetical protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 123 (48.4 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 28/85 (32%), Positives = 50/85 (58%)

Query:   116 LAIGIIG-PFLSAFSFLFILRIVMSWYPKI---PLAKFPYVLAYAPTEPFLLQTRKLIPP 171
             + I  +G  FL+ + +  ILR+VMSW   +   P+A+  +++    TEP +   R+LIP 
Sbjct:   102 IVIATLGNKFLNLYFYAIILRVVMSWIASLQHNPIAEIIFLI----TEPLMRPIRRLIPS 157

Query:   172 LAGVDITPVVWVGLLNFLNEILVGP 196
             +AG D +P+V + LL  ++ ++  P
Sbjct:   158 IAGFDFSPIVLLILLQLISILVFRP 182

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q74EU3 GSU0866 "Uncharacterized protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 103 (41.3 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 23/83 (27%), Positives = 45/83 (54%)

Query:   116 LAIGIIGPFL-SAFSFLFILRIVMSWY---PKIPLAKFPYVLAYAPTEPFLLQTRKLIPP 171
             LAI  +   L + + ++ I R ++SW    P  P+  F     Y  TEP L + R+++P 
Sbjct:     9 LAIAKVADILLTIYLYIIIARAIISWVNPDPYNPIVNF----LYRSTEPVLSRVRRILPD 64

Query:   172 LAGVDITPVVWVGLLNFLNEILV 194
             L G+D++P++ +  + F+   ++
Sbjct:    65 LGGLDLSPILVLVAIYFIQSFVI 87

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0866 GSU_0866 "YGGT family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 103 (41.3 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 23/83 (27%), Positives = 45/83 (54%)

Query:   116 LAIGIIGPFL-SAFSFLFILRIVMSWY---PKIPLAKFPYVLAYAPTEPFLLQTRKLIPP 171
             LAI  +   L + + ++ I R ++SW    P  P+  F     Y  TEP L + R+++P 
Sbjct:     9 LAIAKVADILLTIYLYIIIARAIISWVNPDPYNPIVNF----LYRSTEPVLSRVRRILPD 64

Query:   172 LAGVDITPVVWVGLLNFLNEILV 194
             L G+D++P++ +  + F+   ++
Sbjct:    65 LGGLDLSPILVLVAIYFIQSFVI 87

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81WE1 BAS3749 "YlmG protein" [Bacillus anthracis (taxid:1392)]

 Score = 100 (40.3 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 24/70 (34%), Positives = 38/70 (54%)

Query:   125 LSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVG 184
             +  +S+  I+ I++SW+P    + F   LA    EP+L   R+ IPPL  +DI+P+V + 
Sbjct:    12 IEIYSWALIIYILLSWFPGAKESTFGDFLARI-CEPYLEPFRRFIPPLGMIDISPLVAIF 70

Query:   185 LLNFLNEILV 194
              L      LV
Sbjct:    71 ALKLATSGLV 80

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_4037 BA_4037 "ylmG protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 100 (40.3 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 24/70 (34%), Positives = 38/70 (54%)

Query:   125 LSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVG 184
             +  +S+  I+ I++SW+P    + F   LA    EP+L   R+ IPPL  +DI+P+V + 
Sbjct:    12 IEIYSWALIIYILLSWFPGAKESTFGDFLARI-CEPYLEPFRRFIPPLGMIDISPLVAIF 70

Query:   185 LLNFLNEILV 194
              L      LV
Sbjct:    71 ALKLATSGLV 80

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2079656 YLMG1-1 "AT3G07430" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 5.7e-05, P = 5.7e-05
 Identities = 27/89 (30%), Positives = 50/89 (56%)

Query:   111 PATAKLAIGIIGPFLSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIP 170
             P T  +A+GI   +L  +S + ++R+++SW+P IP  + P        +P+L   R +IP
Sbjct:   146 PLTV-VAVGI-KKWLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIP 203

Query:   171 PLAG-VDITPVVWVGLLNFLNEILVGPQG 198
             P+   +D++P++   +L  L  I+ G  G
Sbjct:   204 PIFDTLDVSPLLAFAVLGTLGSIVHGSTG 232

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016020 "membrane" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0010020 "chloroplast fission" evidence=IMP

GO:0042651 "thylakoid membrane" evidence=IDA

GO:0090143 "nucleoid organization" evidence=IMP

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

TAIR|locus:2132907 YLMG1-2 "AT4G27990" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 0.00026, P = 0.00026
 Identities = 30/120 (25%), Positives = 58/120 (48%)

Query:    80 VNIVKNIKLYVADTSDITSNFVHMLPFADLDPATAKLAIGIIGPFLSAFSFLFILRIVMS 139
             VN+   I+      S +    +   P   L+     +A G+   +L  +S + ++R+++S
Sbjct:   100 VNLSPQIQASFRTASPLFFASLRDRPAGYLNTPLTVVAAGL-SKWLDIYSGVLMVRVLLS 158

Query:   140 WYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAG-VDITPVVWVGLLNFLNEILVGPQG 198
             W+P IP  + P        +P+L   R +IPP+   +D++P++   +L  L  IL   +G
Sbjct:   159 WFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLGSILNNSRG 218

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:504956451 YLMG2 "AT5G21920" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 0.00029, P = 0.00029
 Identities = 31/100 (31%), Positives = 56/100 (56%)

Query:   100 FVHMLPFADLDPATAKLAIGIIGPFLSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPT- 158
             F  +LP  D   A   +A G+I  FL+ ++ + ++R+V++W+P  P    P ++    T 
Sbjct:   120 FAAVLP-GD-SVAGLVVANGLIN-FLNIYNTILVVRLVLTWFPSAP----PAIVNPLSTL 172

Query:   159 -EPFLLQTRKLIPPLAGVDITPVVWVGLLN-FLNEILVGP 196
              +P+L   R  IPPL G+D++P++   +LN F +  +  P
Sbjct:   173 CDPYLNIFRGFIPPLGGLDLSPILAFLVLNAFTSSAMALP 212

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	208
pfam02325	75	pfam02325, YGGT, YGGT family	3e-13
COG0762	96	COG0762, COG0762, Predicted integral membrane prot	1e-12

>gnl|CDD|216974 pfam02325, YGGT, YGGT family

 Score = 62.1 bits (152), Expect = 3e-13
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 121 IGPFLSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAGVDITPV 180
           +   L+ + FL I+R+++SW P  P       L Y  TEP L   R++IPP+ G+D++P+
Sbjct: 1   LSTLLNIYIFLLIIRVILSWVPADPYNPIVQFL-YRLTEPLLRPFRRIIPPIGGIDLSPI 59

Query: 181 VWVGLLNFLNEILVGP 196
           V   LL FL  +L+G 
Sbjct: 60  VAFLLLQFLQILLLGL 75

This family consists of a repeat found in conserved hypothetical integral membrane proteins. The function of this region and the proteins which possess it is unknown. Length = 75

>gnl|CDD|223833 COG0762, COG0762, Predicted integral membrane protein [Function unknown]

 Score = 61.5 bits (150), Expect = 1e-12
 Identities = 28/87 (32%), Positives = 48/87 (55%)

Query: 116 LAIGIIGPFLSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAGV 175
           L++ ++   +  + FL ++R ++SW+P          L    TEP L   R+LIPPL G+
Sbjct: 9   LSLLVLLILIGVYIFLLLIRALLSWFPPAGETNPIGRLLAQLTEPLLRPFRRLIPPLGGI 68

Query: 176 DITPVVWVGLLNFLNEILVGPQGLLVL 202
           D +P+V + +L FL   L+   GL++ 
Sbjct: 69  DFSPIVALLILQFLQFFLIRLLGLILA 95

Length = 96

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	208
PF02325	75	YGGT: YGGT family; InterPro: IPR003425 This family	99.79
COG0762	96	Predicted integral membrane protein [Function unkn	99.73

>PF02325 YGGT: YGGT family; InterPro: IPR003425 This family represents Ycf19

Probab=99.79  E-value=3.2e-19  Score=129.98  Aligned_cols=73  Identities=42%  Similarity=0.883  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCchhH-HHHhhcchhHHHHhhhhCCCCCCcchHHHHHHHHHHHHHHHHHh
Q 028524          121 IGPFLSAFSFLFILRIVMSWYPKIPLAKFPY-VLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVGLLNFLNEILVG  195 (208)
Q Consensus       121 I~~~L~IY~~lLLIR~ILSW~~~~~~n~~P~-q~L~kLTEPiL~PiRRiIPpiGgIDfSPLValilL~lL~~iLv~  195 (208)
                      ++.++++|.+++++|+++||++.+.+  ||. ++++++|||+++|+||++|+.||+|+||+++++++++++.++.+
T Consensus         1 l~~~~~~~~~~i~~r~ilsw~~~~~~--~~~~~~i~~~TeP~l~p~r~~ip~~g~iD~S~lv~~~~l~~l~~~l~~   74 (75)
T PF02325_consen    1 LNTLLSIYIWLIILRFILSWFPANPY--NPFVQFIYRITEPILRPFRRIIPPIGGIDFSPLVALIVLQFLKIILVG   74 (75)
T ss_pred             CHHHHHHHHHHHHHHHHHHhcCcccc--ChHHHHHHHHhhHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHhc
Confidence            46789999999999999999999764  455 99999999999999999999999999999999999999988765

It is associated with phototrophic organisms and may therefore play a role in photosynthesis, despite its wider association with bacteria outside of the cyanobacteria. ; GO: 0016020 membrane

>COG0762 Predicted integral membrane protein [Function unknown]

Probab=99.73  E-value=2.8e-17  Score=126.12  Aligned_cols=81  Identities=33%  Similarity=0.625  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHhhcchhHHHHhhhhCCCCCCcchHHHHHHHHHHHHHHHHHhHHHH
Q 028524          120 IIGPFLSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVGLLNFLNEILVGPQGL  199 (208)
Q Consensus       120 LI~~~L~IY~~lLLIR~ILSW~~~~~~n~~P~q~L~kLTEPiL~PiRRiIPpiGgIDfSPLValilL~lL~~iLv~~lgl  199 (208)
                      .+..++.+|.+.++++.+++|+++..+++...++++++|||+++|+||++|++||+|+||+++++++++++.++.+.++.
T Consensus        13 ~l~~~i~~~~~~~ii~~~lsw~~~~~~~~~i~~~l~~lteP~L~p~Rr~ip~lggiD~Spiv~iliL~~l~~~l~~~~~~   92 (96)
T COG0762          13 VLLILIGVYIFLLLIRALLSWFPPAGETNPIGRLLAQLTEPLLRPFRRLIPPLGGIDFSPIVALLILQFLQFFLIRLLGL   92 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcccCHHHHHHHHhhHhHHHHHHhCCCccCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47889999999999999999999998765555999999999999999999999999999999999999999998888774


Q ss_pred             H
Q 028524          200 L  200 (208)
Q Consensus       200 l  200 (208)
                      .
T Consensus        93 ~   93 (96)
T COG0762          93 I   93 (96)
T ss_pred             H
Confidence            4

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00